BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3384c
Length=130
Score E
Sequences producing significant alignments: (Bits) Value
gi|15842977|ref|NP_338014.1| hypothetical protein MT3492 [Mycoba... 249 9e-65
gi|15610520|ref|NP_217901.1| hypothetical protein Rv3384c [Mycob... 249 1e-64
gi|296169352|ref|ZP_06850977.1| PIN family toxin-antitoxin syste... 206 9e-52
gi|340628364|ref|YP_004746816.1| hypothetical protein MCAN_34091... 199 1e-49
gi|296166224|ref|ZP_06848663.1| PIN family toxin-antitoxin syste... 102 2e-20
gi|284044421|ref|YP_003394761.1| hypothetical protein Cwoe_2967 ... 92.8 2e-17
gi|334337553|ref|YP_004542705.1| PilT protein domain protein [Is... 90.9 5e-17
gi|120402717|ref|YP_952546.1| PilT domain-containing protein [My... 88.2 3e-16
gi|284989378|ref|YP_003407932.1| PilT protein domain-containing ... 87.8 5e-16
gi|336176937|ref|YP_004582312.1| hypothetical protein FsymDg_088... 86.7 9e-16
gi|240170730|ref|ZP_04749389.1| hypothetical protein MkanA1_1555... 85.5 2e-15
gi|15609099|ref|NP_216478.1| hypothetical protein Rv1962c [Mycob... 81.6 3e-14
gi|307700859|ref|ZP_07637884.1| toxin-antitoxin system, toxin co... 80.9 6e-14
gi|269978026|ref|ZP_06184976.1| toxin-antitoxin system, toxin co... 80.5 7e-14
gi|182435669|ref|YP_001823388.1| hypothetical protein SGR_1876 [... 79.7 1e-13
gi|296169436|ref|ZP_06851057.1| PIN family toxin-antitoxin syste... 78.2 3e-13
gi|288917440|ref|ZP_06411806.1| hypothetical protein FrEUN1fDRAF... 77.0 8e-13
gi|31794589|ref|NP_857082.1| hypothetical protein Mb3442 [Mycoba... 76.6 1e-12
gi|326382371|ref|ZP_08204063.1| toxin [Gordonia neofelifaecis NR... 76.6 1e-12
gi|336178644|ref|YP_004584019.1| PilT protein domain-containing ... 76.3 1e-12
gi|15610544|ref|NP_217925.1| hypothetical protein Rv3408 [Mycoba... 75.9 2e-12
gi|108802491|ref|YP_642687.1| hypothetical protein Mmcs_5531 [My... 71.6 3e-11
gi|15843003|ref|NP_338040.1| hypothetical protein MT3516 [Mycoba... 71.6 4e-11
gi|284029018|ref|YP_003378949.1| hypothetical protein Kfla_1046 ... 69.3 2e-10
gi|336178809|ref|YP_004584184.1| PilT protein domain-containing ... 68.9 2e-10
gi|302864894|ref|YP_003833531.1| hypothetical protein Micau_0388... 68.9 2e-10
gi|315501180|ref|YP_004080067.1| hypothetical protein ML5_0364 [... 68.6 3e-10
gi|284045881|ref|YP_003396221.1| hypothetical protein Cwoe_4432 ... 67.8 5e-10
gi|307701081|ref|ZP_07638106.1| toxin-antitoxin system, toxin co... 63.9 7e-09
gi|306818894|ref|ZP_07452615.1| conserved hypothetical protein [... 63.9 7e-09
gi|86741564|ref|YP_481964.1| PilT protein-like protein [Frankia ... 63.5 9e-09
gi|284029011|ref|YP_003378942.1| hypothetical protein Kfla_1038 ... 62.8 2e-08
gi|256372388|ref|YP_003110212.1| PilT protein domain-containing ... 62.4 2e-08
gi|300790923|ref|YP_003771214.1| hypothetical protein AMED_9123 ... 61.6 4e-08
gi|269977174|ref|ZP_06184147.1| toxin-antitoxin system, toxin co... 60.1 1e-07
gi|227875583|ref|ZP_03993723.1| hypothetical protein HMPREF0577_... 60.1 1e-07
gi|111220042|ref|YP_710836.1| hypothetical protein FRAAL0552 [Fr... 58.5 3e-07
gi|124516076|gb|EAY57585.1| conserved hypothetical protein [Lept... 56.2 1e-06
gi|336177878|ref|YP_004583253.1| hypothetical protein FsymDg_189... 55.1 3e-06
gi|325067177|ref|ZP_08125850.1| PilT protein domain-containing p... 54.7 4e-06
gi|314971342|gb|EFT15440.1| toxin-antitoxin system, toxin compon... 54.7 4e-06
gi|229821860|ref|YP_002883386.1| twitching mobility protein PilT... 54.3 6e-06
gi|336179976|ref|YP_004585351.1| PilT protein domain-containing ... 53.9 8e-06
gi|336178692|ref|YP_004584067.1| hypothetical protein FsymDg_281... 53.1 1e-05
gi|336115824|ref|YP_004570590.1| hypothetical protein MLP_01730 ... 52.8 2e-05
gi|297570943|ref|YP_003696717.1| PilT protein domain protein [Ar... 51.6 3e-05
gi|145223797|ref|YP_001134475.1| PilT domain-containing protein ... 51.6 3e-05
gi|94267146|ref|ZP_01290779.1| PilT protein-like [delta proteoba... 51.6 3e-05
gi|78224268|ref|YP_386015.1| hypothetical protein Gmet_3076 [Geo... 51.2 4e-05
gi|88812276|ref|ZP_01127527.1| hypothetical protein NB231_02713 ... 50.4 9e-05
>gi|15842977|ref|NP_338014.1| hypothetical protein MT3492 [Mycobacterium tuberculosis CDC1551]
gi|308232444|ref|ZP_07664085.1| toxin [Mycobacterium tuberculosis SUMu001]
gi|308370247|ref|ZP_07666899.1| toxin [Mycobacterium tuberculosis SUMu002]
19 more sequence titles
Length=131
Score = 249 bits (636), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 1 MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR 60
MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR
Sbjct 2 MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR 61
Query 61 RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK 120
RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK
Sbjct 62 RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK 121
Query 121 TLGMAVIAPS 130
TLGMAVIAPS
Sbjct 122 TLGMAVIAPS 131
>gi|15610520|ref|NP_217901.1| hypothetical protein Rv3384c [Mycobacterium tuberculosis H37Rv]
gi|31794564|ref|NP_857057.1| hypothetical protein Mb3416c [Mycobacterium bovis AF2122/97]
gi|121639308|ref|YP_979532.1| hypothetical protein BCG_3453c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
56 more sequence titles
Length=130
Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 1 MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR 60
MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR
Sbjct 1 MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR 60
Query 61 RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK 120
RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK
Sbjct 61 RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK 120
Query 121 TLGMAVIAPS 130
TLGMAVIAPS
Sbjct 121 TLGMAVIAPS 130
>gi|296169352|ref|ZP_06850977.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895974|gb|EFG75664.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=130
Score = 206 bits (524), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 118/130 (91%), Positives = 123/130 (95%), Gaps = 0/130 (0%)
Query 1 MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR 60
MAAIYLDSSAIVKLAVREPESDALRRYLRTR PRVSSALAR EVMRALL KGESAR+AGR
Sbjct 1 MAAIYLDSSAIVKLAVREPESDALRRYLRTRLPRVSSALARTEVMRALLHKGESARRAGR 60
Query 61 RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK 120
RALA LDLLR+D R+LDLAGGLLP ELRTLDAIHLATAQRLG+DLGRLCTYDDRMRDAA+
Sbjct 61 RALASLDLLRIDNRLLDLAGGLLPIELRTLDAIHLATAQRLGMDLGRLCTYDDRMRDAAE 120
Query 121 TLGMAVIAPS 130
LGMAVIAPS
Sbjct 121 ALGMAVIAPS 130
>gi|340628364|ref|YP_004746816.1| hypothetical protein MCAN_34091 [Mycobacterium canettii CIPT
140010059]
gi|340006554|emb|CCC45740.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=127
Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/127 (92%), Positives = 119/127 (94%), Gaps = 0/127 (0%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGRRAL 63
+YLDSSAIVKLAVREPESDALRRYLRTR PRVSSALARAEVMRALL +GESARKAGRR L
Sbjct 1 MYLDSSAIVKLAVREPESDALRRYLRTRRPRVSSALARAEVMRALLRQGESARKAGRRVL 60
Query 64 AHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTLG 123
A LDLLR+D RVLDLAG LLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAA LG
Sbjct 61 ASLDLLRIDTRVLDLAGALLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAADALG 120
Query 124 MAVIAPS 130
MAVIAPS
Sbjct 121 MAVIAPS 127
>gi|296166224|ref|ZP_06848663.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898408|gb|EFG77975.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=131
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/128 (50%), Positives = 79/128 (62%), Gaps = 2/128 (1%)
Query 5 YLDSSAIVKLAVREPESDALRRYLRT--RHPRVSSALARAEVMRALLDKGESARKAGRRA 62
YLD+SA+VKL V E ES AL+ YLR ++ALAR E++RA+ G A RR
Sbjct 4 YLDTSALVKLVVAEDESTALQEYLRAVAADTLFTAALARTELIRAVSGAGAGAVSQARRI 63
Query 63 LAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTL 122
L LD + + + +LD A L P LRTLDAIHLA AQR G DL + TYD RM AA L
Sbjct 64 LDQLDTINLTRGLLDAAADLRPARLRTLDAIHLAAAQRAGTDLRAVVTYDTRMAAAAADL 123
Query 123 GMAVIAPS 130
G+ + AP+
Sbjct 124 GIVIEAPA 131
>gi|284044421|ref|YP_003394761.1| hypothetical protein Cwoe_2967 [Conexibacter woesei DSM 14684]
gi|283948642|gb|ADB51386.1| conserved hypothetical protein [Conexibacter woesei DSM 14684]
Length=133
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/129 (51%), Positives = 79/129 (62%), Gaps = 0/129 (0%)
Query 2 AAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGRR 61
A YLDSSA+VKL VREPES L R+LR+R RVS ALA EV+RA+ G A R+
Sbjct 5 AVCYLDSSALVKLVVREPESATLTRHLRSRPVRVSCALATVEVVRAVGAHGPEATDRARQ 64
Query 62 ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKT 121
L +D++R+D +L A L LR+LDAIHLA A L D L TYD RM A+
Sbjct 65 VLDGVDMIRLDDPLLHAAATLDGPLLRSLDAIHLAAALALREDEVELITYDRRMAAHAEQ 124
Query 122 LGMAVIAPS 130
LG V AP+
Sbjct 125 LGFVVSAPA 133
>gi|334337553|ref|YP_004542705.1| PilT protein domain protein [Isoptericola variabilis 225]
gi|334107921|gb|AEG44811.1| PilT protein domain protein [Isoptericola variabilis 225]
Length=149
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/126 (47%), Positives = 79/126 (63%), Gaps = 1/126 (0%)
Query 5 YLDSSAIVKLAVREPESDALRRYLRTRHPR-VSSALARAEVMRALLDKGESARKAGRRAL 63
YLD+SA+VKL VREPES AL++++ R VSS LAR E++RA+ R L
Sbjct 3 YLDTSALVKLVVREPESAALKKWVDANDDRLVSSDLARTELLRAVRRAAPEHAVTARAVL 62
Query 64 AHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTLG 123
+DLL + + A L P +R+LDA+HLATA RLG +L + TYD R+ DAA+ G
Sbjct 63 DAVDLLALTTADFEAAAHLDPDIVRSLDALHLATALRLGDELESMVTYDVRLADAARYHG 122
Query 124 MAVIAP 129
+AV AP
Sbjct 123 VAVTAP 128
>gi|120402717|ref|YP_952546.1| PilT domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119955535|gb|ABM12540.1| PilT protein domain protein [Mycobacterium vanbaalenii PYR-1]
Length=134
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/129 (46%), Positives = 79/129 (62%), Gaps = 3/129 (2%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLR---TRHPRVSSALARAEVMRALLDKGESARKAGR 60
IYLD+SA+VKL V EPES+ L +L T P V+S + R E+ RA L G A A R
Sbjct 2 IYLDTSAMVKLVVAEPESEELIDWLNERLTHDPIVTSIIGRVELHRAALRAGAEAMAAAR 61
Query 61 RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK 120
L +D L + + + LAG ++P ELRTLDA+HLATA+ L +C YD R+ DAA+
Sbjct 62 EVLDGVDTLVLTEPIAALAGTMVPAELRTLDALHLATAEIHREGLTAICAYDRRLVDAAR 121
Query 121 TLGMAVIAP 129
+ V+AP
Sbjct 122 ARKLPVVAP 130
>gi|284989378|ref|YP_003407932.1| PilT protein domain-containing protein [Geodermatophilus obscurus
DSM 43160]
gi|284062623|gb|ADB73561.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=130
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/129 (43%), Positives = 76/129 (59%), Gaps = 2/129 (1%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHP--RVSSALARAEVMRALLDKGESARKAGRR 61
I +DSSA+VKL + EPES AL +L +R P +S L R E++RA+ + R
Sbjct 2 IAIDSSALVKLVLDEPESAALEGWLTSRAPLSVAASDLVRVELIRAVARAAPAGVPRART 61
Query 62 ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKT 121
L +DL+ V + +L+ A L P LR+LDA+HLATA LG L YD+R+ AA
Sbjct 62 LLTGVDLVPVTRDLLETAADLGPPSLRSLDALHLATALSLGSALDAFVVYDERLAQAATD 121
Query 122 LGMAVIAPS 130
G+ V+APS
Sbjct 122 AGLPVVAPS 130
>gi|336176937|ref|YP_004582312.1| hypothetical protein FsymDg_0881 [Frankia symbiont of Datisca
glomerata]
gi|334857917|gb|AEH08391.1| hypothetical protein FsymDg_0881 [Frankia symbiont of Datisca
glomerata]
Length=132
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/131 (46%), Positives = 76/131 (59%), Gaps = 5/131 (3%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTR--HPRVSSALARAEVMRAL---LDKGESARKA 58
IYLDS A+VKL V E E+ ALR +L +P+V+S LAR EV+RA+ KA
Sbjct 2 IYLDSCALVKLVVTEAETSALRAFLSAHAGYPQVTSLLARTEVVRAVRRATADDADLYKA 61
Query 59 GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA 118
L LD + +D+ +LD AG + +RTLDAIHLA A+RLG L TYD R+ A
Sbjct 62 AVTMLNRLDHIILDRPILDDAGAVADPLVRTLDAIHLAAARRLGDSLTAFVTYDRRLATA 121
Query 119 AKTLGMAVIAP 129
A G V AP
Sbjct 122 ALDFGFPVRAP 132
>gi|240170730|ref|ZP_04749389.1| hypothetical protein MkanA1_15552 [Mycobacterium kansasii ATCC
12478]
Length=136
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/131 (40%), Positives = 77/131 (59%), Gaps = 5/131 (3%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDKGESAR-KA 58
IYLD+SA+ KL + EPE+D LR +L + +SAL+R E+MR + +GES + +
Sbjct 2 IYLDTSALTKLLIAEPETDELRNWLTVHTDQGEFAATSALSRVELMRVVARQGESGQAER 61
Query 59 GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA 118
R L LD+L + V++LA + P LRTLDAIHLA A ++ +L TYD R+
Sbjct 62 ARYLLDGLDILPLTAPVINLAETIGPATLRTLDAIHLAAATQIKRELTAFVTYDHRLLAG 121
Query 119 AKTLGMAVIAP 129
+G+ +P
Sbjct 122 CLEVGLVTASP 132
>gi|15609099|ref|NP_216478.1| hypothetical protein Rv1962c [Mycobacterium tuberculosis H37Rv]
gi|15841433|ref|NP_336470.1| hypothetical protein MT2012 [Mycobacterium tuberculosis CDC1551]
gi|31793154|ref|NP_855647.1| hypothetical protein Mb1997c [Mycobacterium bovis AF2122/97]
81 more sequence titles
Length=135
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/130 (44%), Positives = 74/130 (57%), Gaps = 4/130 (3%)
Query 4 IYLDSSAIVKLAVREPESDALRRYL--RTRHPRVSSALARAEVMRALLDKGESARKAGRR 61
IYL++SA+VKL E ESDAL +L RT ++SAL E+ RA+ A
Sbjct 2 IYLETSALVKLIRIEVESDALADWLDDRTELRWITSALTEVELSRAIRAVSPEGLPAVPS 61
Query 62 ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLG--VDLGRLCTYDDRMRDAA 119
LA LD +D + A LR+LDAIHLATAQ G L L TYD+R+++AA
Sbjct 62 VLARLDRFEIDAVIRSTAAAYPNPALRSLDAIHLATAQTAGSVAPLTALVTYDNRLKEAA 121
Query 120 KTLGMAVIAP 129
+ L +AV+AP
Sbjct 122 EALSLAVVAP 131
>gi|307700859|ref|ZP_07637884.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris FB024-16]
gi|307613854|gb|EFN93098.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris FB024-16]
Length=133
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/127 (40%), Positives = 73/127 (58%), Gaps = 1/127 (0%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPRV-SSALARAEVMRALLDKGESARKAGRRA 62
YLD+SA+VK +E ES+A +++ +S R E++R G + R R
Sbjct 3 FYLDTSALVKALHQEAESEAFAQWMAANAQHCYTSDFTRVELLRVTGRLGAATRVQARAV 62
Query 63 LAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTL 122
L L+L+ + + D AG L P LR+LDAIHLATA +LG DL L TYD R+ AA+ L
Sbjct 63 LDALNLVAISPAICDTAGLLEPATLRSLDAIHLATALQLGDDLEALVTYDLRLGQAAQML 122
Query 123 GMAVIAP 129
+ +++P
Sbjct 123 AIPLLSP 129
>gi|269978026|ref|ZP_06184976.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris 28-1]
gi|269933535|gb|EEZ90119.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris 28-1]
Length=133
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/127 (40%), Positives = 73/127 (58%), Gaps = 1/127 (0%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPRV-SSALARAEVMRALLDKGESARKAGRRA 62
YLD+SA+VK +E ES+A +++ +S R E++R G + R R
Sbjct 3 FYLDTSALVKALHQEAESEAFAQWMAANAQHCYTSDFTRVELLRVAGRLGAATRVQARAV 62
Query 63 LAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTL 122
L L+L+ + + D AG L P LR+LDAIHLATA +LG DL L TYD R+ AA+ L
Sbjct 63 LDALNLVAISPAICDTAGLLEPATLRSLDAIHLATALQLGDDLEALVTYDLRLGQAAQML 122
Query 123 GMAVIAP 129
+ +++P
Sbjct 123 AIPLLSP 129
>gi|182435669|ref|YP_001823388.1| hypothetical protein SGR_1876 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178464185|dbj|BAG18705.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length=144
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/143 (40%), Positives = 79/143 (56%), Gaps = 16/143 (11%)
Query 4 IYLDSSAIVKLAVREPESDALRRYL--RTRHPRVSSALARAEVMRA------------LL 49
IYLDS A+VKL RE ++DAL +L R + +V+S LA E+MR L+
Sbjct 2 IYLDSCALVKLIKREKDTDALVAFLEERPQQRQVTSDLAVTEIMRVIRRARCGPQGQLLI 61
Query 50 DKGESAR--KAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGR 107
D R +A + L DL+ +D +L+ AG L F +++LDAIHLA+A LG L
Sbjct 62 DDLTFTRLLEAAEKRLNATDLVTLDLALLEEAGALEEFNIKSLDAIHLASALMLGPSLTS 121
Query 108 LCTYDDRMRDAAKTLGMAVIAPS 130
TYD +R A+ G+ V +PS
Sbjct 122 FVTYDGGLRGHAENRGLPVFSPS 144
>gi|296169436|ref|ZP_06851057.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895905|gb|EFG75599.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=135
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/130 (42%), Positives = 72/130 (56%), Gaps = 4/130 (3%)
Query 4 IYLDSSAIVKLAVREPESDALRRYL--RTRHPRVSSALARAEVMRALLDKGESARKAGRR 61
IYLD+SA+VKL E ESDAL +L RT ++SALA E+ RA+ + A
Sbjct 2 IYLDTSALVKLIRIEVESDALADWLDERTETRWITSALAEVELPRAIRAVAPNGLSAVPS 61
Query 62 ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLG--VDLGRLCTYDDRMRDAA 119
LA LD +D+ + A LR+LDAIHLATAQ L + YD R+ DAA
Sbjct 62 VLARLDRFEIDQVIRATAAAYPDPALRSLDAIHLATAQIAASTAPLTAMVAYDSRLSDAA 121
Query 120 KTLGMAVIAP 129
+ LG+ ++ P
Sbjct 122 RALGITIVTP 131
>gi|288917440|ref|ZP_06411806.1| hypothetical protein FrEUN1fDRAFT_1501 [Frankia sp. EUN1f]
gi|288351143|gb|EFC85354.1| hypothetical protein FrEUN1fDRAFT_1501 [Frankia sp. EUN1f]
Length=141
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/123 (46%), Positives = 69/123 (57%), Gaps = 6/123 (4%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRH--PRVSSALARAEVMRALLDKGESARKAGRR 61
IYLDS+A+VKL V EPES AL +L R PR +SALA EV RA+ A R
Sbjct 2 IYLDSAAVVKLVVAEPESAALVDWLNARDDLPRFTSALAEVEVARAIRRAAPEASGRVPR 61
Query 62 ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRL----GVDLGRLCTYDDRMRD 117
L + L +D RV ++A LR+LDAIHLATA RL L TYD R+ +
Sbjct 62 VLDRMYRLEIDGRVRNVAAAFDDPLLRSLDAIHLATALRLVDANDTQLEAFVTYDKRLLE 121
Query 118 AAK 120
AA+
Sbjct 122 AAR 124
>gi|31794589|ref|NP_857082.1| hypothetical protein Mb3442 [Mycobacterium bovis AF2122/97]
gi|121639333|ref|YP_979557.1| hypothetical protein BCG_3478 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148824615|ref|YP_001289369.1| hypothetical protein TBFG_13442 [Mycobacterium tuberculosis F11]
67 more sequence titles
Length=136
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/131 (36%), Positives = 72/131 (55%), Gaps = 5/131 (3%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDKGESARKA- 58
IY+D+SA+ KL + EPE+ LR +L + + +S L R E+MR + G+ +
Sbjct 2 IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVELMRVVARYGQPGQTER 61
Query 59 GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA 118
R L LD+L + + V+ LA + P LR+LDAIHLA A ++ +L TYD R+
Sbjct 62 ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG 121
Query 119 AKTLGMAVIAP 129
+ +G +P
Sbjct 122 CREVGFVTASP 132
>gi|326382371|ref|ZP_08204063.1| toxin [Gordonia neofelifaecis NRRL B-59395]
gi|326199101|gb|EGD56283.1| toxin [Gordonia neofelifaecis NRRL B-59395]
Length=142
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/132 (44%), Positives = 73/132 (56%), Gaps = 7/132 (5%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTR----HPRVSSALARAEVMRAL--LDKGESARK 57
IYLD+SA+VKL V E ES L +L T+ VS LAR EVMR + LD+
Sbjct 2 IYLDTSALVKLLVAEAESADLVSWLDTQVNSGENLVSGDLARVEVMRTVARLDEPGLLDD 61
Query 58 AGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRD 117
A R L LD + + V+D A + P LR++DAIHLA A +LG L YD R+ D
Sbjct 62 A-RMMLDGLDSIPTSETVVDEATVIGPSTLRSVDAIHLAAASQLGSALTAFVAYDVRLHD 120
Query 118 AAKTLGMAVIAP 129
AA LG+ AP
Sbjct 121 AAAELGLPASAP 132
>gi|336178644|ref|YP_004584019.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334859624|gb|AEH10098.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=138
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/133 (48%), Positives = 76/133 (58%), Gaps = 9/133 (6%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPR--VSSALARAEVMRALLDKGESARKAGRR 61
IYLD+SAIVKL E ESD L +L + ++S LA E+ RAL + E AR A
Sbjct 2 IYLDTSAIVKLIRPELESDKLVDWLNAQQNERVITSKLAEVELPRAL-RREEPARLAAVA 60
Query 62 A-LAHLDLLRVDKRVLDLAGGLLPF-ELRTLDAIHLATAQRL---GVDLGRLCTYDDRMR 116
LAHLD L +D V AG PF LR+LDAIHLATA +L G + TYD R+
Sbjct 61 GVLAHLDRLDIDDAVRATAGAY-PFPHLRSLDAIHLATADQLVASGKTVSAFVTYDRRLA 119
Query 117 DAAKTLGMAVIAP 129
A LG+AV AP
Sbjct 120 VTAGELGLAVAAP 132
>gi|15610544|ref|NP_217925.1| hypothetical protein Rv3408 [Mycobacterium tuberculosis H37Rv]
gi|148663272|ref|YP_001284795.1| hypothetical protein MRA_3448 [Mycobacterium tuberculosis H37Ra]
gi|167968706|ref|ZP_02550983.1| hypothetical protein MtubH3_11975 [Mycobacterium tuberculosis
H37Ra]
gi|307086187|ref|ZP_07495300.1| toxin [Mycobacterium tuberculosis SUMu012]
gi|332278240|sp|Q50717.3|VPC47_MYCTU RecName: Full=Probable ribonuclease VapC47; Short=Probable RNase
VapC47; AltName: Full=Toxin VapC47
gi|1449379|emb|CAB01015.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|148507424|gb|ABQ75233.1| hypothetical protein MRA_3448 [Mycobacterium tuberculosis H37Ra]
gi|308364354|gb|EFP53205.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=136
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/131 (36%), Positives = 71/131 (55%), Gaps = 5/131 (3%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDKGESARKA- 58
IY+D+SA+ KL + EPE+ LR +L + + +S L R E MR + G+ +
Sbjct 2 IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER 61
Query 59 GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA 118
R L LD+L + + V+ LA + P LR+LDAIHLA A ++ +L TYD R+
Sbjct 62 ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG 121
Query 119 AKTLGMAVIAP 129
+ +G +P
Sbjct 122 CREVGFVTASP 132
>gi|108802491|ref|YP_642687.1| hypothetical protein Mmcs_5531 [Mycobacterium sp. MCS]
gi|119855319|ref|YP_935922.1| hypothetical protein Mkms_5933 [Mycobacterium sp. KMS]
gi|108772910|gb|ABG11631.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119698036|gb|ABL95107.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=133
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/128 (41%), Positives = 68/128 (54%), Gaps = 2/128 (1%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLR--TRHPRVSSALARAEVMRALLDKGESARKAGRR 61
IYLD++AI+KL + PES AL YLR T + AL+R +V+RA A + R
Sbjct 2 IYLDATAIMKLIAQAPESAALTTYLRAHTDTRWFTCALSRLDVVRATAALPAEATEHAHR 61
Query 62 ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKT 121
LA LD + V R+LD A L P RT DA+H+A A G L L TYD + AA
Sbjct 62 ILAGLDTVAVTDRLLDAAVALTPAPARTTDALHIAAALSAGPRLRTLITYDPDLSRAAAD 121
Query 122 LGMAVIAP 129
+ + P
Sbjct 122 HHINTVHP 129
>gi|15843003|ref|NP_338040.1| hypothetical protein MT3516 [Mycobacterium tuberculosis CDC1551]
gi|308378313|ref|ZP_07668719.1| toxin [Mycobacterium tuberculosis SUMu009]
gi|308380689|ref|ZP_07669253.1| toxin [Mycobacterium tuberculosis SUMu011]
gi|13883344|gb|AAK47854.1| hypothetical protein MT3516 [Mycobacterium tuberculosis CDC1551]
gi|308352931|gb|EFP41782.1| toxin [Mycobacterium tuberculosis SUMu009]
gi|308360743|gb|EFP49594.1| toxin [Mycobacterium tuberculosis SUMu011]
Length=133
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/129 (35%), Positives = 70/129 (55%), Gaps = 5/129 (3%)
Query 6 LDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDKGESARKA-GR 60
+D+SA+ KL + EPE+ LR +L + + +S L R E+MR + G+ + R
Sbjct 1 MDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVELMRVVARYGQPGQTERAR 60
Query 61 RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK 120
L LD+L + + V+ LA + P LR+LDAIHLA A ++ +L TYD R+ +
Sbjct 61 YLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGCR 120
Query 121 TLGMAVIAP 129
+G +P
Sbjct 121 EVGFVTASP 129
>gi|284029018|ref|YP_003378949.1| hypothetical protein Kfla_1046 [Kribbella flavida DSM 17836]
gi|283808311|gb|ADB30150.1| conserved hypothetical protein [Kribbella flavida DSM 17836]
Length=131
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/129 (42%), Positives = 70/129 (55%), Gaps = 3/129 (2%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRH--PRVSSALARAEVMRALLDKGESARKAGRR 61
IYL ++A+VKL RE SDAL +L R P VSSALA E+ RAL + A
Sbjct 2 IYLATAALVKLVRREVPSDALTDWLNDRMDLPLVSSALAEIELPRALRRTEPALLAAVPA 61
Query 62 ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQR-LGVDLGRLCTYDDRMRDAAK 120
L+ L + +D++V A +R LDAIHLATA L DL TYD R+ +A+
Sbjct 62 VLSRLAVYEIDEQVRATAAAYADPLIRPLDAIHLATAHAVLADDLTAFVTYDRRLLASAE 121
Query 121 TLGMAVIAP 129
TLG+ P
Sbjct 122 TLGLPTACP 130
>gi|336178809|ref|YP_004584184.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334859789|gb|AEH10263.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=129
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/127 (45%), Positives = 70/127 (56%), Gaps = 1/127 (0%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRH-PRVSSALARAEVMRALLDKGESARKAGRRA 62
IYLDSSA+VKL E E+ ALR +L TR VSSALA EV RAL +A
Sbjct 2 IYLDSSALVKLVHPELETRALRSWLATRPGVSVSSALAVLEVTRALRRSDPAALPRVPDV 61
Query 63 LAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTL 122
L+ + L+ VD+ V+ A L LR+LDA+HLATA RL +YD R+ AA
Sbjct 62 LSRVMLVPVDQPVIVAAAALTDPLLRSLDALHLATALRLDTPSLVFVSYDKRLSAAAVQE 121
Query 123 GMAVIAP 129
+ V P
Sbjct 122 RLNVAVP 128
>gi|302864894|ref|YP_003833531.1| hypothetical protein Micau_0388 [Micromonospora aurantiaca ATCC
27029]
gi|302567753|gb|ADL43955.1| hypothetical protein Micau_0388 [Micromonospora aurantiaca ATCC
27029]
Length=136
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/132 (40%), Positives = 69/132 (53%), Gaps = 6/132 (4%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPR--VSSALARAEVMRALLDKGESARKAGRR 61
IYLDS+A++K+ RE E+ L +L R VSSALA EV RAL A
Sbjct 2 IYLDSAAVIKMLRREAETADLLGWLNERAGTALVSSALAEVEVPRALRRAAPQALVGVPS 61
Query 62 ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRL----GVDLGRLCTYDDRMRD 117
L L + +D V AG LR+LDA+HLATA+ L + TYD R+ +
Sbjct 62 VLGRLYRVEIDATVRATAGAYPEPMLRSLDAVHLATAEILARQAAAEFVAFVTYDKRLLE 121
Query 118 AAKTLGMAVIAP 129
AAK +G+ V +P
Sbjct 122 AAKAIGLPVASP 133
>gi|315501180|ref|YP_004080067.1| hypothetical protein ML5_0364 [Micromonospora sp. L5]
gi|315407799|gb|ADU05916.1| hypothetical protein ML5_0364 [Micromonospora sp. L5]
Length=136
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/132 (39%), Positives = 69/132 (53%), Gaps = 6/132 (4%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPR--VSSALARAEVMRALLDKGESARKAGRR 61
IYLDS+A++K+ RE E+ L +L R VSSAL EV RAL A
Sbjct 2 IYLDSAAVIKMLRREAETADLLGWLNERAGTALVSSALVEVEVPRALRRAAPQALVGVPS 61
Query 62 ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRL----GVDLGRLCTYDDRMRD 117
L L + +D V AG LR+LDA+HLATA+ L + TYD+R+ +
Sbjct 62 VLGRLYRVEIDATVRATAGAYPEPMLRSLDAVHLATAEILARQAAAEFVAFVTYDERLLE 121
Query 118 AAKTLGMAVIAP 129
AAK +G+ V +P
Sbjct 122 AAKAIGLPVASP 133
>gi|284045881|ref|YP_003396221.1| hypothetical protein Cwoe_4432 [Conexibacter woesei DSM 14684]
gi|283950102|gb|ADB52846.1| conserved hypothetical protein [Conexibacter woesei DSM 14684]
Length=131
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/132 (36%), Positives = 75/132 (57%), Gaps = 3/132 (2%)
Query 1 MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR 60
MA +YLD+SA+ ++ + EP+ DA+ L VSS L R E+ R L G ++ +
Sbjct 1 MAGVYLDTSALGRVVLDEPDGDAIGAALAGFEAVVSSRLLRIELHRLGLRTGIASEEI-E 59
Query 61 RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVD--LGRLCTYDDRMRDA 118
LA + ++ +D +L A + P + TLDAIHLATA +L + + + T+D R+ +
Sbjct 60 GWLAGVAIVPLDDAILAAAEAVSPSSVATLDAIHLATALQLAAERHIASIMTFDARLAEG 119
Query 119 AKTLGMAVIAPS 130
A+ G+ VI PS
Sbjct 120 AREHGLDVITPS 131
>gi|307701081|ref|ZP_07638106.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris FB024-16]
gi|307614076|gb|EFN93320.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris FB024-16]
Length=87
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/79 (46%), Positives = 52/79 (66%), Gaps = 0/79 (0%)
Query 52 GESARKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTY 111
G + R R L L+L+R+ ++ DLAG L P LR+LDAIHLATA ++G DL L TY
Sbjct 6 GVAQRGQARAILDALNLVRISSQICDLAGLLEPTVLRSLDAIHLATALQVGDDLEALVTY 65
Query 112 DDRMRDAAKTLGMAVIAPS 130
D R+ AA+ +G+ +++P
Sbjct 66 DLRLGVAAQMVGIPLLSPG 84
>gi|306818894|ref|ZP_07452615.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
gi|304648296|gb|EFM45600.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
Length=97
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/79 (46%), Positives = 52/79 (66%), Gaps = 0/79 (0%)
Query 52 GESARKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTY 111
G + R R L L+L+R+ ++ DLAG L P LR+LDAIHLATA ++G DL L TY
Sbjct 16 GVAQRGQARAILDALNLVRISSQICDLAGLLEPTVLRSLDAIHLATALQVGDDLEALVTY 75
Query 112 DDRMRDAAKTLGMAVIAPS 130
D R+ AA+ +G+ +++P
Sbjct 76 DLRLGVAAQMVGIPLLSPG 94
>gi|86741564|ref|YP_481964.1| PilT protein-like protein [Frankia sp. CcI3]
gi|86568426|gb|ABD12235.1| PilT protein-like [Frankia sp. CcI3]
Length=129
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/127 (40%), Positives = 68/127 (54%), Gaps = 1/127 (0%)
Query 5 YLDSSAIVKLAVREPESDALRRYLRTRH-PRVSSALARAEVMRALLDKGESARKAGRRAL 63
YLDSSA++KL E + ALR +L R VSSAL EV RAL +A L
Sbjct 3 YLDSSALMKLTHPERGTRALRSWLAVRPGVAVSSALVMLEVTRALRRSDPAALPRIPDVL 62
Query 64 AHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTLG 123
+ + L+ +D+ ++ A L LR+LDA+HLATA RL +YD R+ AA G
Sbjct 63 SRITLVPIDQPIMVSAAALTDPLLRSLDALHLATALRLDAPSLVFVSYDKRLSTAAAQEG 122
Query 124 MAVIAPS 130
+ V P+
Sbjct 123 LTVAVPA 129
>gi|284029011|ref|YP_003378942.1| hypothetical protein Kfla_1038 [Kribbella flavida DSM 17836]
gi|283808304|gb|ADB30143.1| hypothetical protein Kfla_1038 [Kribbella flavida DSM 17836]
Length=134
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/133 (35%), Positives = 70/133 (53%), Gaps = 6/133 (4%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPR---VSSALARAEVMRALLDKGESARKAGR 60
IYLD+ A++K E ES ALR++ P ++S LA+ E+ R LL G ++
Sbjct 2 IYLDACALLKFIKPEKESAALRKWREALPPDTELLTSELAKLEITRTLLRAGVDHQQVPY 61
Query 61 ---RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRD 117
+A+ + ++ + VL A L +LDAIHLA+A+ DL + TYD +
Sbjct 62 FTGQAVRGIYVVDLSSTVLARAMAYRTARLGSLDAIHLASAEPFRADLEQFVTYDKELSG 121
Query 118 AAKTLGMAVIAPS 130
AA LG V+AP+
Sbjct 122 AAAELGFPVLAPA 134
>gi|256372388|ref|YP_003110212.1| PilT protein domain-containing protein [Acidimicrobium ferrooxidans
DSM 10331]
gi|256008972|gb|ACU54539.1| PilT protein domain protein [Acidimicrobium ferrooxidans DSM
10331]
Length=130
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/128 (41%), Positives = 71/128 (56%), Gaps = 1/128 (0%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPRV-SSALARAEVMRALLDKGESARKAGRRA 62
YLD+SA KL V EP S+A+ + + +V +S L R E++RA + R
Sbjct 3 FYLDTSAAAKLVVAEPASEAMASWAASHETQVIASDLLRTELLRATRRAAPDRMQRARSV 62
Query 63 LAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTL 122
L L L + L+ A L P ELR+LDA+HLA A LG +L + TYD+RM AA
Sbjct 63 LDALTLFNLTSATLERAATLDPEELRSLDALHLAAALELGDELDGIVTYDNRMAAAASQY 122
Query 123 GMAVIAPS 130
G+AVI P+
Sbjct 123 GVAVIVPT 130
>gi|300790923|ref|YP_003771214.1| hypothetical protein AMED_9123 [Amycolatopsis mediterranei U32]
gi|299800437|gb|ADJ50812.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340532619|gb|AEK47824.1| hypothetical protein RAM_46795 [Amycolatopsis mediterranei S699]
Length=138
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/129 (39%), Positives = 64/129 (50%), Gaps = 3/129 (2%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPR--VSSALARAEVMRALLDKGESARKAGRR 61
IYLD++A+VKL E ES AL +L R V+S LA EV RALL
Sbjct 2 IYLDTAALVKLIRHEAESAALVDWLDERQGTVLVTSTLAEVEVSRALLRSDPGLLTDVPA 61
Query 62 ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQR-LGVDLGRLCTYDDRMRDAAK 120
+A + +D V A +LR+LDAIHLATA G L TYD R+ A+
Sbjct 62 VMARVAKYEIDDVVRRTAAAYPSPDLRSLDAIHLATAHAVFGRQLTSFVTYDKRLLAVAE 121
Query 121 TLGMAVIAP 129
LG+ +P
Sbjct 122 ALGLPTDSP 130
>gi|269977174|ref|ZP_06184147.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris 28-1]
gi|269934477|gb|EEZ91038.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris 28-1]
Length=87
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/75 (47%), Positives = 49/75 (66%), Gaps = 0/75 (0%)
Query 56 RKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRM 115
R R L L+L+R+ ++ DLAG L P LR+LDAIHLATA ++G DL L TYD R+
Sbjct 10 RGQARAILDALNLVRISSQICDLAGLLEPAVLRSLDAIHLATALQVGDDLEALVTYDLRL 69
Query 116 RDAAKTLGMAVIAPS 130
AA+ G+ +++P
Sbjct 70 GVAAQMGGIPLLSPG 84
>gi|227875583|ref|ZP_03993723.1| hypothetical protein HMPREF0577_1024 [Mobiluncus mulieris ATCC
35243]
gi|227843919|gb|EEJ54088.1| hypothetical protein HMPREF0577_1024 [Mobiluncus mulieris ATCC
35243]
Length=97
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/75 (47%), Positives = 49/75 (66%), Gaps = 0/75 (0%)
Query 56 RKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRM 115
R R L L+L+R+ ++ DLAG L P LR+LDAIHLATA ++G DL L TYD R+
Sbjct 20 RGQARAILDALNLVRISSQICDLAGLLEPAVLRSLDAIHLATALQVGDDLEALVTYDLRL 79
Query 116 RDAAKTLGMAVIAPS 130
AA+ G+ +++P
Sbjct 80 GVAAQMGGIPLLSPG 94
>gi|111220042|ref|YP_710836.1| hypothetical protein FRAAL0552 [Frankia alni ACN14a]
gi|111147574|emb|CAJ59227.1| hypothetical protein; putative PilT domain [Frankia alni ACN14a]
Length=138
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/136 (37%), Positives = 72/136 (53%), Gaps = 16/136 (11%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTR-HPR--VSSALARAEVMR-------ALLDKGE 53
IYLD+SA+ K+ + E ESD LR++L + P VSSAL E+ R A+L E
Sbjct 5 IYLDTSALAKMFIAEKESDDLRQWLVEQVQPLRLVSSALLAVELTRLLGLINPAILGLAE 64
Query 54 SARKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDD 113
S + +DL+++ +L A + P LRTLDAIHLATA L L + +YD
Sbjct 65 SFLSS------DVDLVQITPPLLADASRVPPARLRTLDAIHLATALDLRDSLDIVLSYDK 118
Query 114 RMRDAAKTLGMAVIAP 129
+ +A G+ +P
Sbjct 119 LLIEAVSASGLVPASP 134
>gi|124516076|gb|EAY57585.1| conserved hypothetical protein [Leptospirillum rubarum]
gi|206603762|gb|EDZ40242.1| Conserved protein of unknown function [Leptospirillum sp. Group
II '5-way CG']
Length=156
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/142 (31%), Positives = 65/142 (46%), Gaps = 19/142 (13%)
Query 3 AIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESAR------ 56
A+YLDSSAIVK V EP +R++ + +S +A EV+ A K S
Sbjct 4 ALYLDSSAIVKFYVHEPHYQNVRQWAESADILATSEIAYTEVVSAFSQKVRSEEIGWDYV 63
Query 57 -----KAGRRALAHLDLLRVDKRVLDLAGGLLP--FELRTLDAIHLATAQRLGVDLGR-- 107
K + L ++R+D L+ A +L F LR +D++HL A +
Sbjct 64 SQVLPKLNQLWFGRLAVVRIDP--LEAAQYVLSPTFPLRAMDSVHLHAAIAFRSQMPEYS 121
Query 108 --LCTYDDRMRDAAKTLGMAVI 127
C++D R+ AA T G V+
Sbjct 122 VMFCSFDRRLIQAANTYGFRVL 143
>gi|336177878|ref|YP_004583253.1| hypothetical protein FsymDg_1894 [Frankia symbiont of Datisca
glomerata]
gi|334858858|gb|AEH09332.1| hypothetical protein FsymDg_1894 [Frankia symbiont of Datisca
glomerata]
Length=136
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/134 (39%), Positives = 68/134 (51%), Gaps = 10/134 (7%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDK----GESA 55
IYLDSSAI+K V E +S AL + H VSS+LA EV AL + SA
Sbjct 3 IYLDSSAILKRLVAETDSLALVAAVDKHHEDGDLLVSSSLAWIEVTHALRARFGTDSASA 62
Query 56 RKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRM 115
AL+ + + V+ LA + P LR+LDAIHL +A L D ++ TYDDR+
Sbjct 63 TVHADAALSGVAEHPLSPEVVSLARRIGPAVLRSLDAIHLTSALLLDAD--QMLTYDDRL 120
Query 116 RDAAKTLGMAVIAP 129
A G+ AP
Sbjct 121 AMACAQSGLVFTAP 134
>gi|325067177|ref|ZP_08125850.1| PilT protein domain-containing protein [Actinomyces oris K20]
Length=131
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/135 (35%), Positives = 69/135 (52%), Gaps = 9/135 (6%)
Query 1 MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPR-----VSSALARAEVMRALLDKGESA 55
M+ YLD+SA +KL + E ES+ L +L T H SS L E+ A +GE
Sbjct 1 MSVYYLDTSAALKLLIEEKESEPLAAWL-TSHTTDGDSLCSSFLLHTELHCAARRRGELN 59
Query 56 RKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRM 115
++A L+ +DL+ V + L A LR DAIHL A L + + TYD M
Sbjct 60 QEAVASLLSGIDLIDVSRSHLTDAAR-TSMGLRAADAIHLTAA--LDIQADAIVTYDIEM 116
Query 116 RDAAKTLGMAVIAPS 130
++AA+ ++ +APS
Sbjct 117 QNAARYCNLSPVAPS 131
>gi|314971342|gb|EFT15440.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium
acnes HL037PA3]
gi|328906281|gb|EGG26056.1| PilT protein domain protein [Propionibacterium humerusii P08]
Length=71
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/51 (59%), Positives = 37/51 (73%), Gaps = 3/51 (5%)
Query 81 GLLPFE-LRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTLGMAVIAPS 130
GLLP + LR+LDA+HLATA LGVD L TYD R++ A +GM V+APS
Sbjct 23 GLLPGQNLRSLDALHLATAIDLGVD--ALVTYDQRLQSTAHEIGMPVVAPS 71
>gi|229821860|ref|YP_002883386.1| twitching mobility protein PilT [Beutenbergia cavernae DSM 12333]
gi|229567773|gb|ACQ81624.1| PilT protein domain protein [Beutenbergia cavernae DSM 12333]
Length=131
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/131 (36%), Positives = 66/131 (51%), Gaps = 4/131 (3%)
Query 1 MAAIYLDSSAIVKLAVREPESDALRRYLRTR--HPRVSSALARAEVMRALLDKGESARKA 58
MA YLD+SA KL E ES AL YLR V+S + E++R G + R
Sbjct 1 MALTYLDTSASAKLIAVEAESAALADYLRASPDAEAVTSVVGIVELLRVGARLGPAQRLR 60
Query 59 GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA 118
A L + + + + A P LRTLDAIH+A+A G + + +YD R+ +A
Sbjct 61 AVDLAARLGTIALTESIARAAADAAPANLRTLDAIHVASAVVAGAE--SVVSYDARLSEA 118
Query 119 AKTLGMAVIAP 129
A G+ V+AP
Sbjct 119 AVAAGLRVVAP 129
>gi|336179976|ref|YP_004585351.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334860956|gb|AEH11430.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=138
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/130 (35%), Positives = 66/130 (51%), Gaps = 4/130 (3%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTR-HPR--VSSALARAEVMRALLDKGESARKAGR 60
+YLD+SA+ KL + E E+ LR++ + P VSS L E+ R L +
Sbjct 5 VYLDTSALAKLFIAEKETPDLRQWFADQVEPLRLVSSTLLAVELTRLLNLVNPTMLGPAE 64
Query 61 RAL-AHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAA 119
L A +DL+ + +L A + P LRTLDAIHLATA L L + +YD + +A
Sbjct 65 SFLSADVDLVEITPPLLGDAARVPPPRLRTLDAIHLATALDLRDSLDVVLSYDKLLVEAV 124
Query 120 KTLGMAVIAP 129
G+ +P
Sbjct 125 HASGLPAASP 134
>gi|336178692|ref|YP_004584067.1| hypothetical protein FsymDg_2810 [Frankia symbiont of Datisca
glomerata]
gi|334859672|gb|AEH10146.1| hypothetical protein FsymDg_2810 [Frankia symbiont of Datisca
glomerata]
Length=135
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/132 (37%), Positives = 62/132 (47%), Gaps = 6/132 (4%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRH--PRVSSALARAEVMRALLDKGESARKAGRR 61
IYLDS+A++KL EP + L +L P VSS L E RAL A
Sbjct 2 IYLDSAAVIKLVRAEPFTVDLLDWLDAHRALPLVSSVLVEVEASRALRRCAPQALGRLPV 61
Query 62 ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRL----GVDLGRLCTYDDRMRD 117
LA L L ++ V +A +LR+LDA+HLATA L G L TYD R+
Sbjct 62 TLARLYRLEINATVRAVAAAYDDPQLRSLDAVHLATATVLTDQPGARLEAFVTYDKRLLA 121
Query 118 AAKTLGMAVIAP 129
A G+ +P
Sbjct 122 IAARAGLPTASP 133
>gi|336115824|ref|YP_004570590.1| hypothetical protein MLP_01730 [Microlunatus phosphovorus NM-1]
gi|334683602|dbj|BAK33187.1| hypothetical protein MLP_01730 [Microlunatus phosphovorus NM-1]
Length=139
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/67 (47%), Positives = 43/67 (65%), Gaps = 1/67 (1%)
Query 63 LAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTL 122
+A L LL VD ++ A ++P LR+LDA+HLA AQR+GVD + T+D M A++L
Sbjct 72 VAELTLLTVDDALVAEAAAIVP-HLRSLDALHLAGAQRIGVDAVTIVTHDLGMAKTAESL 130
Query 123 GMAVIAP 129
G AV P
Sbjct 131 GFAVHDP 137
>gi|297570943|ref|YP_003696717.1| PilT protein domain protein [Arcanobacterium haemolyticum DSM
20595]
gi|296931290|gb|ADH92098.1| PilT protein domain protein [Arcanobacterium haemolyticum DSM
20595]
Length=134
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/132 (32%), Positives = 67/132 (51%), Gaps = 9/132 (6%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAG---- 59
IYLD+SA KL + E ++ ++ YLR+ VSS L R E++R L+ +S +
Sbjct 2 IYLDTSAAAKLFLPESGTERVKGYLRSGETIVSSTLLRTELIRTLVRSLDSVVEHTLIPD 61
Query 60 --RRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGV--DLGRLCTYDDRM 115
L + L+ V +L + G+L +TLDA+H+ATA + D ++ T+D
Sbjct 62 YVDALLPAITLISVSDPILSQSEGILGHS-KTLDALHIATALSVNSSGDPVKILTFDKNF 120
Query 116 RDAAKTLGMAVI 127
AK G V+
Sbjct 121 AACAKRCGFDVL 132
>gi|145223797|ref|YP_001134475.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145216283|gb|ABP45687.1| PilT protein domain protein [Mycobacterium gilvum PYR-GCK]
Length=235
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/133 (35%), Positives = 67/133 (51%), Gaps = 11/133 (8%)
Query 5 YLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRAL--------LDKGE--S 54
YLD+SA V L + EP S A RR+ VSS L E AL L +GE
Sbjct 91 YLDTSAFVPLLIDEPASVACRRFWDDADAIVSSRLLYVETAAALAQAGRIGRLTEGEHLQ 150
Query 55 ARKAGRRALAHLDLLRVDKRVLDLAGGLLP-FELRTLDAIHLATAQRLGVDLGRLCTYDD 113
AR+ + + +D++ VD++++ A L LR DA+H A+A++L D + D
Sbjct 151 ARRRLGQMWSEMDVIEVDEQIVTRAADLAHRLSLRGYDAVHAASAEQLDDDDVAAASGDQ 210
Query 114 RMRDAAKTLGMAV 126
R+ A LGMA+
Sbjct 211 RLLSAWMDLGMAI 223
>gi|94267146|ref|ZP_01290779.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|94268899|ref|ZP_01291317.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93451421|gb|EAT02269.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93452142|gb|EAT02813.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=148
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/137 (35%), Positives = 68/137 (50%), Gaps = 20/137 (14%)
Query 5 YLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDK----GESARKAGR 60
YLD+SA+ K + E S+ + RY++ V S L E MR+LL + GE
Sbjct 8 YLDTSALAKWYLHEVGSETVTRYIQELDIAVISQLTMVE-MRSLLARRRRMGEIDATLEA 66
Query 61 R---------ALAHLDLLRVDKRVLDLAGGLLP----FELRTLDAIHLATAQRLGVDLGR 107
R ALAHL L V+ + A L+ F L+TLDA+HLA + G++ +
Sbjct 67 RIFATFQEDIALAHLQLYPVEVSLWSEAANLIACHPDFPLKTLDALHLAVVKLHGIE--Q 124
Query 108 LCTYDDRMRDAAKTLGM 124
L T D M +AA+ G+
Sbjct 125 LATADRVMANAAEATGI 141
>gi|78224268|ref|YP_386015.1| hypothetical protein Gmet_3076 [Geobacter metallireducens GS-15]
gi|78195523|gb|ABB33290.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
Length=142
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/142 (31%), Positives = 74/142 (53%), Gaps = 22/142 (15%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALL---DKGESARK--- 57
+YLD+S++VKL V E SD +R+++ + + +A E++ AL ++G+ R+
Sbjct 3 LYLDTSSLVKLYVEEVCSDTVRQWVESAEAVATCRVAYPEMLSALTRRHNRGDLPREDCE 62
Query 58 ------AGRRALAHLDLLRVDKRVLDLAGGLL-PFELRTLDAIHLATAQRLGVDLGRL-- 108
AG H L D+ AG L+ + LR DA+HLA A+ L D G +
Sbjct 63 VVAECFAGE--WEHFVALDFDEIE---AGHLVRKYGLRGFDAVHLAAAKLLSNDCGAIEV 117
Query 109 --CTYDDRMRDAAKTLGMAVIA 128
++D+++ AA+ G A++A
Sbjct 118 AFSSFDNKLNGAAEAEGFALLA 139
>gi|88812276|ref|ZP_01127527.1| hypothetical protein NB231_02713 [Nitrococcus mobilis Nb-231]
gi|88790527|gb|EAR21643.1| hypothetical protein NB231_02713 [Nitrococcus mobilis Nb-231]
Length=143
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/135 (33%), Positives = 69/135 (52%), Gaps = 14/135 (10%)
Query 4 IYLDSSAIVKLAVREPESDALRRYLRT---------RHPRVSSALARAEVMRALLDKGES 54
+YLD+SA +KL + E S A R+ + + + +A A+A M+ L D +
Sbjct 3 VYLDTSAFLKLYLEEEGSKATRQLVDAAVAVCTHVITYAEMCAAFAQAVRMQRLTDAEWT 62
Query 55 ARKAGRRA-LAHLDLLRVDKRVLDLAGGLLP-FELRTLDAIHLATAQRL---GVDLGRLC 109
+K A L +L +D+ ++ AG L F LR D++HLA A+R+ D +L
Sbjct 63 HQKDCFEADWNALQVLFIDEPLVRRAGKLAEGFRLRGFDSVHLAAAERVWRQAPDNFQLA 122
Query 110 TYDDRMRDAAKTLGM 124
+D R+ AA TLGM
Sbjct 123 AFDVRLVSAACTLGM 137
Lambda K H
0.324 0.137 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127765705240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40