BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3384c

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15842977|ref|NP_338014.1|  hypothetical protein MT3492 [Mycoba...   249    9e-65
gi|15610520|ref|NP_217901.1|  hypothetical protein Rv3384c [Mycob...   249    1e-64
gi|296169352|ref|ZP_06850977.1|  PIN family toxin-antitoxin syste...   206    9e-52
gi|340628364|ref|YP_004746816.1|  hypothetical protein MCAN_34091...   199    1e-49
gi|296166224|ref|ZP_06848663.1|  PIN family toxin-antitoxin syste...   102    2e-20
gi|284044421|ref|YP_003394761.1|  hypothetical protein Cwoe_2967 ...  92.8    2e-17
gi|334337553|ref|YP_004542705.1|  PilT protein domain protein [Is...  90.9    5e-17
gi|120402717|ref|YP_952546.1|  PilT domain-containing protein [My...  88.2    3e-16
gi|284989378|ref|YP_003407932.1|  PilT protein domain-containing ...  87.8    5e-16
gi|336176937|ref|YP_004582312.1|  hypothetical protein FsymDg_088...  86.7    9e-16
gi|240170730|ref|ZP_04749389.1|  hypothetical protein MkanA1_1555...  85.5    2e-15
gi|15609099|ref|NP_216478.1|  hypothetical protein Rv1962c [Mycob...  81.6    3e-14
gi|307700859|ref|ZP_07637884.1|  toxin-antitoxin system, toxin co...  80.9    6e-14
gi|269978026|ref|ZP_06184976.1|  toxin-antitoxin system, toxin co...  80.5    7e-14
gi|182435669|ref|YP_001823388.1|  hypothetical protein SGR_1876 [...  79.7    1e-13
gi|296169436|ref|ZP_06851057.1|  PIN family toxin-antitoxin syste...  78.2    3e-13
gi|288917440|ref|ZP_06411806.1|  hypothetical protein FrEUN1fDRAF...  77.0    8e-13
gi|31794589|ref|NP_857082.1|  hypothetical protein Mb3442 [Mycoba...  76.6    1e-12
gi|326382371|ref|ZP_08204063.1|  toxin [Gordonia neofelifaecis NR...  76.6    1e-12
gi|336178644|ref|YP_004584019.1|  PilT protein domain-containing ...  76.3    1e-12
gi|15610544|ref|NP_217925.1|  hypothetical protein Rv3408 [Mycoba...  75.9    2e-12
gi|108802491|ref|YP_642687.1|  hypothetical protein Mmcs_5531 [My...  71.6    3e-11
gi|15843003|ref|NP_338040.1|  hypothetical protein MT3516 [Mycoba...  71.6    4e-11
gi|284029018|ref|YP_003378949.1|  hypothetical protein Kfla_1046 ...  69.3    2e-10
gi|336178809|ref|YP_004584184.1|  PilT protein domain-containing ...  68.9    2e-10
gi|302864894|ref|YP_003833531.1|  hypothetical protein Micau_0388...  68.9    2e-10
gi|315501180|ref|YP_004080067.1|  hypothetical protein ML5_0364 [...  68.6    3e-10
gi|284045881|ref|YP_003396221.1|  hypothetical protein Cwoe_4432 ...  67.8    5e-10
gi|307701081|ref|ZP_07638106.1|  toxin-antitoxin system, toxin co...  63.9    7e-09
gi|306818894|ref|ZP_07452615.1|  conserved hypothetical protein [...  63.9    7e-09
gi|86741564|ref|YP_481964.1|  PilT protein-like protein [Frankia ...  63.5    9e-09
gi|284029011|ref|YP_003378942.1|  hypothetical protein Kfla_1038 ...  62.8    2e-08
gi|256372388|ref|YP_003110212.1|  PilT protein domain-containing ...  62.4    2e-08
gi|300790923|ref|YP_003771214.1|  hypothetical protein AMED_9123 ...  61.6    4e-08
gi|269977174|ref|ZP_06184147.1|  toxin-antitoxin system, toxin co...  60.1    1e-07
gi|227875583|ref|ZP_03993723.1|  hypothetical protein HMPREF0577_...  60.1    1e-07
gi|111220042|ref|YP_710836.1|  hypothetical protein FRAAL0552 [Fr...  58.5    3e-07
gi|124516076|gb|EAY57585.1|  conserved hypothetical protein [Lept...  56.2    1e-06
gi|336177878|ref|YP_004583253.1|  hypothetical protein FsymDg_189...  55.1    3e-06
gi|325067177|ref|ZP_08125850.1|  PilT protein domain-containing p...  54.7    4e-06
gi|314971342|gb|EFT15440.1|  toxin-antitoxin system, toxin compon...  54.7    4e-06
gi|229821860|ref|YP_002883386.1|  twitching mobility protein PilT...  54.3    6e-06
gi|336179976|ref|YP_004585351.1|  PilT protein domain-containing ...  53.9    8e-06
gi|336178692|ref|YP_004584067.1|  hypothetical protein FsymDg_281...  53.1    1e-05
gi|336115824|ref|YP_004570590.1|  hypothetical protein MLP_01730 ...  52.8    2e-05
gi|297570943|ref|YP_003696717.1|  PilT protein domain protein [Ar...  51.6    3e-05
gi|145223797|ref|YP_001134475.1|  PilT domain-containing protein ...  51.6    3e-05
gi|94267146|ref|ZP_01290779.1|  PilT protein-like [delta proteoba...  51.6    3e-05
gi|78224268|ref|YP_386015.1|  hypothetical protein Gmet_3076 [Geo...  51.2    4e-05
gi|88812276|ref|ZP_01127527.1|  hypothetical protein NB231_02713 ...  50.4    9e-05


>gi|15842977|ref|NP_338014.1| hypothetical protein MT3492 [Mycobacterium tuberculosis CDC1551]
 gi|308232444|ref|ZP_07664085.1| toxin [Mycobacterium tuberculosis SUMu001]
 gi|308370247|ref|ZP_07666899.1| toxin [Mycobacterium tuberculosis SUMu002]
 19 more sequence titles
 Length=131

 Score =  249 bits (636),  Expect = 9e-65, Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR  60
            MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR
Sbjct  2    MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR  61

Query  61   RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK  120
            RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK
Sbjct  62   RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK  121

Query  121  TLGMAVIAPS  130
            TLGMAVIAPS
Sbjct  122  TLGMAVIAPS  131


>gi|15610520|ref|NP_217901.1| hypothetical protein Rv3384c [Mycobacterium tuberculosis H37Rv]
 gi|31794564|ref|NP_857057.1| hypothetical protein Mb3416c [Mycobacterium bovis AF2122/97]
 gi|121639308|ref|YP_979532.1| hypothetical protein BCG_3453c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 56 more sequence titles
 Length=130

 Score =  249 bits (635),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR  60
            MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR
Sbjct  1    MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR  60

Query  61   RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK  120
            RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK
Sbjct  61   RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK  120

Query  121  TLGMAVIAPS  130
            TLGMAVIAPS
Sbjct  121  TLGMAVIAPS  130


>gi|296169352|ref|ZP_06850977.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895974|gb|EFG75664.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=130

 Score =  206 bits (524),  Expect = 9e-52, Method: Compositional matrix adjust.
 Identities = 118/130 (91%), Positives = 123/130 (95%), Gaps = 0/130 (0%)

Query  1    MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR  60
            MAAIYLDSSAIVKLAVREPESDALRRYLRTR PRVSSALAR EVMRALL KGESAR+AGR
Sbjct  1    MAAIYLDSSAIVKLAVREPESDALRRYLRTRLPRVSSALARTEVMRALLHKGESARRAGR  60

Query  61   RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK  120
            RALA LDLLR+D R+LDLAGGLLP ELRTLDAIHLATAQRLG+DLGRLCTYDDRMRDAA+
Sbjct  61   RALASLDLLRIDNRLLDLAGGLLPIELRTLDAIHLATAQRLGMDLGRLCTYDDRMRDAAE  120

Query  121  TLGMAVIAPS  130
             LGMAVIAPS
Sbjct  121  ALGMAVIAPS  130


>gi|340628364|ref|YP_004746816.1| hypothetical protein MCAN_34091 [Mycobacterium canettii CIPT 
140010059]
 gi|340006554|emb|CCC45740.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=127

 Score =  199 bits (506),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 116/127 (92%), Positives = 119/127 (94%), Gaps = 0/127 (0%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGRRAL  63
            +YLDSSAIVKLAVREPESDALRRYLRTR PRVSSALARAEVMRALL +GESARKAGRR L
Sbjct  1    MYLDSSAIVKLAVREPESDALRRYLRTRRPRVSSALARAEVMRALLRQGESARKAGRRVL  60

Query  64   AHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTLG  123
            A LDLLR+D RVLDLAG LLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAA  LG
Sbjct  61   ASLDLLRIDTRVLDLAGALLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAADALG  120

Query  124  MAVIAPS  130
            MAVIAPS
Sbjct  121  MAVIAPS  127


>gi|296166224|ref|ZP_06848663.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898408|gb|EFG77975.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=131

 Score =  102 bits (254),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 63/128 (50%), Positives = 79/128 (62%), Gaps = 2/128 (1%)

Query  5    YLDSSAIVKLAVREPESDALRRYLRT--RHPRVSSALARAEVMRALLDKGESARKAGRRA  62
            YLD+SA+VKL V E ES AL+ YLR        ++ALAR E++RA+   G  A    RR 
Sbjct  4    YLDTSALVKLVVAEDESTALQEYLRAVAADTLFTAALARTELIRAVSGAGAGAVSQARRI  63

Query  63   LAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTL  122
            L  LD + + + +LD A  L P  LRTLDAIHLA AQR G DL  + TYD RM  AA  L
Sbjct  64   LDQLDTINLTRGLLDAAADLRPARLRTLDAIHLAAAQRAGTDLRAVVTYDTRMAAAAADL  123

Query  123  GMAVIAPS  130
            G+ + AP+
Sbjct  124  GIVIEAPA  131


>gi|284044421|ref|YP_003394761.1| hypothetical protein Cwoe_2967 [Conexibacter woesei DSM 14684]
 gi|283948642|gb|ADB51386.1| conserved hypothetical protein [Conexibacter woesei DSM 14684]
Length=133

 Score = 92.8 bits (229),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 65/129 (51%), Positives = 79/129 (62%), Gaps = 0/129 (0%)

Query  2    AAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGRR  61
            A  YLDSSA+VKL VREPES  L R+LR+R  RVS ALA  EV+RA+   G  A    R+
Sbjct  5    AVCYLDSSALVKLVVREPESATLTRHLRSRPVRVSCALATVEVVRAVGAHGPEATDRARQ  64

Query  62   ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKT  121
             L  +D++R+D  +L  A  L    LR+LDAIHLA A  L  D   L TYD RM   A+ 
Sbjct  65   VLDGVDMIRLDDPLLHAAATLDGPLLRSLDAIHLAAALALREDEVELITYDRRMAAHAEQ  124

Query  122  LGMAVIAPS  130
            LG  V AP+
Sbjct  125  LGFVVSAPA  133


>gi|334337553|ref|YP_004542705.1| PilT protein domain protein [Isoptericola variabilis 225]
 gi|334107921|gb|AEG44811.1| PilT protein domain protein [Isoptericola variabilis 225]
Length=149

 Score = 90.9 bits (224),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 59/126 (47%), Positives = 79/126 (63%), Gaps = 1/126 (0%)

Query  5    YLDSSAIVKLAVREPESDALRRYLRTRHPR-VSSALARAEVMRALLDKGESARKAGRRAL  63
            YLD+SA+VKL VREPES AL++++     R VSS LAR E++RA+           R  L
Sbjct  3    YLDTSALVKLVVREPESAALKKWVDANDDRLVSSDLARTELLRAVRRAAPEHAVTARAVL  62

Query  64   AHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTLG  123
              +DLL +     + A  L P  +R+LDA+HLATA RLG +L  + TYD R+ DAA+  G
Sbjct  63   DAVDLLALTTADFEAAAHLDPDIVRSLDALHLATALRLGDELESMVTYDVRLADAARYHG  122

Query  124  MAVIAP  129
            +AV AP
Sbjct  123  VAVTAP  128


>gi|120402717|ref|YP_952546.1| PilT domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955535|gb|ABM12540.1| PilT protein domain protein [Mycobacterium vanbaalenii PYR-1]
Length=134

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 59/129 (46%), Positives = 79/129 (62%), Gaps = 3/129 (2%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLR---TRHPRVSSALARAEVMRALLDKGESARKAGR  60
            IYLD+SA+VKL V EPES+ L  +L    T  P V+S + R E+ RA L  G  A  A R
Sbjct  2    IYLDTSAMVKLVVAEPESEELIDWLNERLTHDPIVTSIIGRVELHRAALRAGAEAMAAAR  61

Query  61   RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK  120
              L  +D L + + +  LAG ++P ELRTLDA+HLATA+     L  +C YD R+ DAA+
Sbjct  62   EVLDGVDTLVLTEPIAALAGTMVPAELRTLDALHLATAEIHREGLTAICAYDRRLVDAAR  121

Query  121  TLGMAVIAP  129
               + V+AP
Sbjct  122  ARKLPVVAP  130


>gi|284989378|ref|YP_003407932.1| PilT protein domain-containing protein [Geodermatophilus obscurus 
DSM 43160]
 gi|284062623|gb|ADB73561.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=130

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 55/129 (43%), Positives = 76/129 (59%), Gaps = 2/129 (1%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHP--RVSSALARAEVMRALLDKGESARKAGRR  61
            I +DSSA+VKL + EPES AL  +L +R P    +S L R E++RA+     +     R 
Sbjct  2    IAIDSSALVKLVLDEPESAALEGWLTSRAPLSVAASDLVRVELIRAVARAAPAGVPRART  61

Query  62   ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKT  121
             L  +DL+ V + +L+ A  L P  LR+LDA+HLATA  LG  L     YD+R+  AA  
Sbjct  62   LLTGVDLVPVTRDLLETAADLGPPSLRSLDALHLATALSLGSALDAFVVYDERLAQAATD  121

Query  122  LGMAVIAPS  130
             G+ V+APS
Sbjct  122  AGLPVVAPS  130


>gi|336176937|ref|YP_004582312.1| hypothetical protein FsymDg_0881 [Frankia symbiont of Datisca 
glomerata]
 gi|334857917|gb|AEH08391.1| hypothetical protein FsymDg_0881 [Frankia symbiont of Datisca 
glomerata]
Length=132

 Score = 86.7 bits (213),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 60/131 (46%), Positives = 76/131 (59%), Gaps = 5/131 (3%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTR--HPRVSSALARAEVMRAL---LDKGESARKA  58
            IYLDS A+VKL V E E+ ALR +L     +P+V+S LAR EV+RA+           KA
Sbjct  2    IYLDSCALVKLVVTEAETSALRAFLSAHAGYPQVTSLLARTEVVRAVRRATADDADLYKA  61

Query  59   GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA  118
                L  LD + +D+ +LD AG +    +RTLDAIHLA A+RLG  L    TYD R+  A
Sbjct  62   AVTMLNRLDHIILDRPILDDAGAVADPLVRTLDAIHLAAARRLGDSLTAFVTYDRRLATA  121

Query  119  AKTLGMAVIAP  129
            A   G  V AP
Sbjct  122  ALDFGFPVRAP  132


>gi|240170730|ref|ZP_04749389.1| hypothetical protein MkanA1_15552 [Mycobacterium kansasii ATCC 
12478]
Length=136

 Score = 85.5 bits (210),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 52/131 (40%), Positives = 77/131 (59%), Gaps = 5/131 (3%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDKGESAR-KA  58
            IYLD+SA+ KL + EPE+D LR +L     +     +SAL+R E+MR +  +GES + + 
Sbjct  2    IYLDTSALTKLLIAEPETDELRNWLTVHTDQGEFAATSALSRVELMRVVARQGESGQAER  61

Query  59   GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA  118
             R  L  LD+L +   V++LA  + P  LRTLDAIHLA A ++  +L    TYD R+   
Sbjct  62   ARYLLDGLDILPLTAPVINLAETIGPATLRTLDAIHLAAATQIKRELTAFVTYDHRLLAG  121

Query  119  AKTLGMAVIAP  129
               +G+   +P
Sbjct  122  CLEVGLVTASP  132


>gi|15609099|ref|NP_216478.1| hypothetical protein Rv1962c [Mycobacterium tuberculosis H37Rv]
 gi|15841433|ref|NP_336470.1| hypothetical protein MT2012 [Mycobacterium tuberculosis CDC1551]
 gi|31793154|ref|NP_855647.1| hypothetical protein Mb1997c [Mycobacterium bovis AF2122/97]
 81 more sequence titles
 Length=135

 Score = 81.6 bits (200),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 56/130 (44%), Positives = 74/130 (57%), Gaps = 4/130 (3%)

Query  4    IYLDSSAIVKLAVREPESDALRRYL--RTRHPRVSSALARAEVMRALLDKGESARKAGRR  61
            IYL++SA+VKL   E ESDAL  +L  RT    ++SAL   E+ RA+         A   
Sbjct  2    IYLETSALVKLIRIEVESDALADWLDDRTELRWITSALTEVELSRAIRAVSPEGLPAVPS  61

Query  62   ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLG--VDLGRLCTYDDRMRDAA  119
             LA LD   +D  +   A       LR+LDAIHLATAQ  G    L  L TYD+R+++AA
Sbjct  62   VLARLDRFEIDAVIRSTAAAYPNPALRSLDAIHLATAQTAGSVAPLTALVTYDNRLKEAA  121

Query  120  KTLGMAVIAP  129
            + L +AV+AP
Sbjct  122  EALSLAVVAP  131


>gi|307700859|ref|ZP_07637884.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris FB024-16]
 gi|307613854|gb|EFN93098.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris FB024-16]
Length=133

 Score = 80.9 bits (198),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 50/127 (40%), Positives = 73/127 (58%), Gaps = 1/127 (0%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPRV-SSALARAEVMRALLDKGESARKAGRRA  62
             YLD+SA+VK   +E ES+A  +++        +S   R E++R     G + R   R  
Sbjct  3    FYLDTSALVKALHQEAESEAFAQWMAANAQHCYTSDFTRVELLRVTGRLGAATRVQARAV  62

Query  63   LAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTL  122
            L  L+L+ +   + D AG L P  LR+LDAIHLATA +LG DL  L TYD R+  AA+ L
Sbjct  63   LDALNLVAISPAICDTAGLLEPATLRSLDAIHLATALQLGDDLEALVTYDLRLGQAAQML  122

Query  123  GMAVIAP  129
             + +++P
Sbjct  123  AIPLLSP  129


>gi|269978026|ref|ZP_06184976.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris 28-1]
 gi|269933535|gb|EEZ90119.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris 28-1]
Length=133

 Score = 80.5 bits (197),  Expect = 7e-14, Method: Compositional matrix adjust.
 Identities = 50/127 (40%), Positives = 73/127 (58%), Gaps = 1/127 (0%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPRV-SSALARAEVMRALLDKGESARKAGRRA  62
             YLD+SA+VK   +E ES+A  +++        +S   R E++R     G + R   R  
Sbjct  3    FYLDTSALVKALHQEAESEAFAQWMAANAQHCYTSDFTRVELLRVAGRLGAATRVQARAV  62

Query  63   LAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTL  122
            L  L+L+ +   + D AG L P  LR+LDAIHLATA +LG DL  L TYD R+  AA+ L
Sbjct  63   LDALNLVAISPAICDTAGLLEPATLRSLDAIHLATALQLGDDLEALVTYDLRLGQAAQML  122

Query  123  GMAVIAP  129
             + +++P
Sbjct  123  AIPLLSP  129


>gi|182435669|ref|YP_001823388.1| hypothetical protein SGR_1876 [Streptomyces griseus subsp. griseus 
NBRC 13350]
 gi|178464185|dbj|BAG18705.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 
13350]
Length=144

 Score = 79.7 bits (195),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 56/143 (40%), Positives = 79/143 (56%), Gaps = 16/143 (11%)

Query  4    IYLDSSAIVKLAVREPESDALRRYL--RTRHPRVSSALARAEVMRA------------LL  49
            IYLDS A+VKL  RE ++DAL  +L  R +  +V+S LA  E+MR             L+
Sbjct  2    IYLDSCALVKLIKREKDTDALVAFLEERPQQRQVTSDLAVTEIMRVIRRARCGPQGQLLI  61

Query  50   DKGESAR--KAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGR  107
            D     R  +A  + L   DL+ +D  +L+ AG L  F +++LDAIHLA+A  LG  L  
Sbjct  62   DDLTFTRLLEAAEKRLNATDLVTLDLALLEEAGALEEFNIKSLDAIHLASALMLGPSLTS  121

Query  108  LCTYDDRMRDAAKTLGMAVIAPS  130
              TYD  +R  A+  G+ V +PS
Sbjct  122  FVTYDGGLRGHAENRGLPVFSPS  144


>gi|296169436|ref|ZP_06851057.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895905|gb|EFG75599.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=135

 Score = 78.2 bits (191),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 54/130 (42%), Positives = 72/130 (56%), Gaps = 4/130 (3%)

Query  4    IYLDSSAIVKLAVREPESDALRRYL--RTRHPRVSSALARAEVMRALLDKGESARKAGRR  61
            IYLD+SA+VKL   E ESDAL  +L  RT    ++SALA  E+ RA+     +   A   
Sbjct  2    IYLDTSALVKLIRIEVESDALADWLDERTETRWITSALAEVELPRAIRAVAPNGLSAVPS  61

Query  62   ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLG--VDLGRLCTYDDRMRDAA  119
             LA LD   +D+ +   A       LR+LDAIHLATAQ       L  +  YD R+ DAA
Sbjct  62   VLARLDRFEIDQVIRATAAAYPDPALRSLDAIHLATAQIAASTAPLTAMVAYDSRLSDAA  121

Query  120  KTLGMAVIAP  129
            + LG+ ++ P
Sbjct  122  RALGITIVTP  131


>gi|288917440|ref|ZP_06411806.1| hypothetical protein FrEUN1fDRAFT_1501 [Frankia sp. EUN1f]
 gi|288351143|gb|EFC85354.1| hypothetical protein FrEUN1fDRAFT_1501 [Frankia sp. EUN1f]
Length=141

 Score = 77.0 bits (188),  Expect = 8e-13, Method: Compositional matrix adjust.
 Identities = 56/123 (46%), Positives = 69/123 (57%), Gaps = 6/123 (4%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRH--PRVSSALARAEVMRALLDKGESARKAGRR  61
            IYLDS+A+VKL V EPES AL  +L  R   PR +SALA  EV RA+      A     R
Sbjct  2    IYLDSAAVVKLVVAEPESAALVDWLNARDDLPRFTSALAEVEVARAIRRAAPEASGRVPR  61

Query  62   ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRL----GVDLGRLCTYDDRMRD  117
             L  +  L +D RV ++A       LR+LDAIHLATA RL       L    TYD R+ +
Sbjct  62   VLDRMYRLEIDGRVRNVAAAFDDPLLRSLDAIHLATALRLVDANDTQLEAFVTYDKRLLE  121

Query  118  AAK  120
            AA+
Sbjct  122  AAR  124


>gi|31794589|ref|NP_857082.1| hypothetical protein Mb3442 [Mycobacterium bovis AF2122/97]
 gi|121639333|ref|YP_979557.1| hypothetical protein BCG_3478 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148824615|ref|YP_001289369.1| hypothetical protein TBFG_13442 [Mycobacterium tuberculosis F11]
 67 more sequence titles
 Length=136

 Score = 76.6 bits (187),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 46/131 (36%), Positives = 72/131 (55%), Gaps = 5/131 (3%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDKGESARKA-  58
            IY+D+SA+ KL + EPE+  LR +L  +  +     +S L R E+MR +   G+  +   
Sbjct  2    IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVELMRVVARYGQPGQTER  61

Query  59   GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA  118
             R  L  LD+L + + V+ LA  + P  LR+LDAIHLA A ++  +L    TYD R+   
Sbjct  62   ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG  121

Query  119  AKTLGMAVIAP  129
             + +G    +P
Sbjct  122  CREVGFVTASP  132


>gi|326382371|ref|ZP_08204063.1| toxin [Gordonia neofelifaecis NRRL B-59395]
 gi|326199101|gb|EGD56283.1| toxin [Gordonia neofelifaecis NRRL B-59395]
Length=142

 Score = 76.6 bits (187),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 58/132 (44%), Positives = 73/132 (56%), Gaps = 7/132 (5%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTR----HPRVSSALARAEVMRAL--LDKGESARK  57
            IYLD+SA+VKL V E ES  L  +L T+       VS  LAR EVMR +  LD+      
Sbjct  2    IYLDTSALVKLLVAEAESADLVSWLDTQVNSGENLVSGDLARVEVMRTVARLDEPGLLDD  61

Query  58   AGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRD  117
            A R  L  LD +   + V+D A  + P  LR++DAIHLA A +LG  L     YD R+ D
Sbjct  62   A-RMMLDGLDSIPTSETVVDEATVIGPSTLRSVDAIHLAAASQLGSALTAFVAYDVRLHD  120

Query  118  AAKTLGMAVIAP  129
            AA  LG+   AP
Sbjct  121  AAAELGLPASAP  132


>gi|336178644|ref|YP_004584019.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334859624|gb|AEH10098.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=138

 Score = 76.3 bits (186),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 63/133 (48%), Positives = 76/133 (58%), Gaps = 9/133 (6%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPR--VSSALARAEVMRALLDKGESARKAGRR  61
            IYLD+SAIVKL   E ESD L  +L  +     ++S LA  E+ RAL  + E AR A   
Sbjct  2    IYLDTSAIVKLIRPELESDKLVDWLNAQQNERVITSKLAEVELPRAL-RREEPARLAAVA  60

Query  62   A-LAHLDLLRVDKRVLDLAGGLLPF-ELRTLDAIHLATAQRL---GVDLGRLCTYDDRMR  116
              LAHLD L +D  V   AG   PF  LR+LDAIHLATA +L   G  +    TYD R+ 
Sbjct  61   GVLAHLDRLDIDDAVRATAGAY-PFPHLRSLDAIHLATADQLVASGKTVSAFVTYDRRLA  119

Query  117  DAAKTLGMAVIAP  129
              A  LG+AV AP
Sbjct  120  VTAGELGLAVAAP  132


>gi|15610544|ref|NP_217925.1| hypothetical protein Rv3408 [Mycobacterium tuberculosis H37Rv]
 gi|148663272|ref|YP_001284795.1| hypothetical protein MRA_3448 [Mycobacterium tuberculosis H37Ra]
 gi|167968706|ref|ZP_02550983.1| hypothetical protein MtubH3_11975 [Mycobacterium tuberculosis 
H37Ra]
 gi|307086187|ref|ZP_07495300.1| toxin [Mycobacterium tuberculosis SUMu012]
 gi|332278240|sp|Q50717.3|VPC47_MYCTU RecName: Full=Probable ribonuclease VapC47; Short=Probable RNase 
VapC47; AltName: Full=Toxin VapC47
 gi|1449379|emb|CAB01015.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148507424|gb|ABQ75233.1| hypothetical protein MRA_3448 [Mycobacterium tuberculosis H37Ra]
 gi|308364354|gb|EFP53205.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=136

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 46/131 (36%), Positives = 71/131 (55%), Gaps = 5/131 (3%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDKGESARKA-  58
            IY+D+SA+ KL + EPE+  LR +L  +  +     +S L R E MR +   G+  +   
Sbjct  2    IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER  61

Query  59   GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA  118
             R  L  LD+L + + V+ LA  + P  LR+LDAIHLA A ++  +L    TYD R+   
Sbjct  62   ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG  121

Query  119  AKTLGMAVIAP  129
             + +G    +P
Sbjct  122  CREVGFVTASP  132


>gi|108802491|ref|YP_642687.1| hypothetical protein Mmcs_5531 [Mycobacterium sp. MCS]
 gi|119855319|ref|YP_935922.1| hypothetical protein Mkms_5933 [Mycobacterium sp. KMS]
 gi|108772910|gb|ABG11631.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119698036|gb|ABL95107.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=133

 Score = 71.6 bits (174),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 52/128 (41%), Positives = 68/128 (54%), Gaps = 2/128 (1%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLR--TRHPRVSSALARAEVMRALLDKGESARKAGRR  61
            IYLD++AI+KL  + PES AL  YLR  T     + AL+R +V+RA       A +   R
Sbjct  2    IYLDATAIMKLIAQAPESAALTTYLRAHTDTRWFTCALSRLDVVRATAALPAEATEHAHR  61

Query  62   ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKT  121
             LA LD + V  R+LD A  L P   RT DA+H+A A   G  L  L TYD  +  AA  
Sbjct  62   ILAGLDTVAVTDRLLDAAVALTPAPARTTDALHIAAALSAGPRLRTLITYDPDLSRAAAD  121

Query  122  LGMAVIAP  129
              +  + P
Sbjct  122  HHINTVHP  129


>gi|15843003|ref|NP_338040.1| hypothetical protein MT3516 [Mycobacterium tuberculosis CDC1551]
 gi|308378313|ref|ZP_07668719.1| toxin [Mycobacterium tuberculosis SUMu009]
 gi|308380689|ref|ZP_07669253.1| toxin [Mycobacterium tuberculosis SUMu011]
 gi|13883344|gb|AAK47854.1| hypothetical protein MT3516 [Mycobacterium tuberculosis CDC1551]
 gi|308352931|gb|EFP41782.1| toxin [Mycobacterium tuberculosis SUMu009]
 gi|308360743|gb|EFP49594.1| toxin [Mycobacterium tuberculosis SUMu011]
Length=133

 Score = 71.6 bits (174),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 44/129 (35%), Positives = 70/129 (55%), Gaps = 5/129 (3%)

Query  6    LDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDKGESARKA-GR  60
            +D+SA+ KL + EPE+  LR +L  +  +     +S L R E+MR +   G+  +    R
Sbjct  1    MDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVELMRVVARYGQPGQTERAR  60

Query  61   RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAK  120
              L  LD+L + + V+ LA  + P  LR+LDAIHLA A ++  +L    TYD R+    +
Sbjct  61   YLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGCR  120

Query  121  TLGMAVIAP  129
             +G    +P
Sbjct  121  EVGFVTASP  129


>gi|284029018|ref|YP_003378949.1| hypothetical protein Kfla_1046 [Kribbella flavida DSM 17836]
 gi|283808311|gb|ADB30150.1| conserved hypothetical protein [Kribbella flavida DSM 17836]
Length=131

 Score = 69.3 bits (168),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 54/129 (42%), Positives = 70/129 (55%), Gaps = 3/129 (2%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRH--PRVSSALARAEVMRALLDKGESARKAGRR  61
            IYL ++A+VKL  RE  SDAL  +L  R   P VSSALA  E+ RAL     +   A   
Sbjct  2    IYLATAALVKLVRREVPSDALTDWLNDRMDLPLVSSALAEIELPRALRRTEPALLAAVPA  61

Query  62   ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQR-LGVDLGRLCTYDDRMRDAAK  120
             L+ L +  +D++V   A       +R LDAIHLATA   L  DL    TYD R+  +A+
Sbjct  62   VLSRLAVYEIDEQVRATAAAYADPLIRPLDAIHLATAHAVLADDLTAFVTYDRRLLASAE  121

Query  121  TLGMAVIAP  129
            TLG+    P
Sbjct  122  TLGLPTACP  130


>gi|336178809|ref|YP_004584184.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334859789|gb|AEH10263.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=129

 Score = 68.9 bits (167),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 56/127 (45%), Positives = 70/127 (56%), Gaps = 1/127 (0%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRH-PRVSSALARAEVMRALLDKGESARKAGRRA  62
            IYLDSSA+VKL   E E+ ALR +L TR    VSSALA  EV RAL     +A       
Sbjct  2    IYLDSSALVKLVHPELETRALRSWLATRPGVSVSSALAVLEVTRALRRSDPAALPRVPDV  61

Query  63   LAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTL  122
            L+ + L+ VD+ V+  A  L    LR+LDA+HLATA RL        +YD R+  AA   
Sbjct  62   LSRVMLVPVDQPVIVAAAALTDPLLRSLDALHLATALRLDTPSLVFVSYDKRLSAAAVQE  121

Query  123  GMAVIAP  129
             + V  P
Sbjct  122  RLNVAVP  128


>gi|302864894|ref|YP_003833531.1| hypothetical protein Micau_0388 [Micromonospora aurantiaca ATCC 
27029]
 gi|302567753|gb|ADL43955.1| hypothetical protein Micau_0388 [Micromonospora aurantiaca ATCC 
27029]
Length=136

 Score = 68.9 bits (167),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 52/132 (40%), Positives = 69/132 (53%), Gaps = 6/132 (4%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPR--VSSALARAEVMRALLDKGESARKAGRR  61
            IYLDS+A++K+  RE E+  L  +L  R     VSSALA  EV RAL      A      
Sbjct  2    IYLDSAAVIKMLRREAETADLLGWLNERAGTALVSSALAEVEVPRALRRAAPQALVGVPS  61

Query  62   ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRL----GVDLGRLCTYDDRMRD  117
             L  L  + +D  V   AG      LR+LDA+HLATA+ L      +     TYD R+ +
Sbjct  62   VLGRLYRVEIDATVRATAGAYPEPMLRSLDAVHLATAEILARQAAAEFVAFVTYDKRLLE  121

Query  118  AAKTLGMAVIAP  129
            AAK +G+ V +P
Sbjct  122  AAKAIGLPVASP  133


>gi|315501180|ref|YP_004080067.1| hypothetical protein ML5_0364 [Micromonospora sp. L5]
 gi|315407799|gb|ADU05916.1| hypothetical protein ML5_0364 [Micromonospora sp. L5]
Length=136

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 51/132 (39%), Positives = 69/132 (53%), Gaps = 6/132 (4%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPR--VSSALARAEVMRALLDKGESARKAGRR  61
            IYLDS+A++K+  RE E+  L  +L  R     VSSAL   EV RAL      A      
Sbjct  2    IYLDSAAVIKMLRREAETADLLGWLNERAGTALVSSALVEVEVPRALRRAAPQALVGVPS  61

Query  62   ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRL----GVDLGRLCTYDDRMRD  117
             L  L  + +D  V   AG      LR+LDA+HLATA+ L      +     TYD+R+ +
Sbjct  62   VLGRLYRVEIDATVRATAGAYPEPMLRSLDAVHLATAEILARQAAAEFVAFVTYDERLLE  121

Query  118  AAKTLGMAVIAP  129
            AAK +G+ V +P
Sbjct  122  AAKAIGLPVASP  133


>gi|284045881|ref|YP_003396221.1| hypothetical protein Cwoe_4432 [Conexibacter woesei DSM 14684]
 gi|283950102|gb|ADB52846.1| conserved hypothetical protein [Conexibacter woesei DSM 14684]
Length=131

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 47/132 (36%), Positives = 75/132 (57%), Gaps = 3/132 (2%)

Query  1    MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAGR  60
            MA +YLD+SA+ ++ + EP+ DA+   L      VSS L R E+ R  L  G ++ +   
Sbjct  1    MAGVYLDTSALGRVVLDEPDGDAIGAALAGFEAVVSSRLLRIELHRLGLRTGIASEEI-E  59

Query  61   RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVD--LGRLCTYDDRMRDA  118
              LA + ++ +D  +L  A  + P  + TLDAIHLATA +L  +  +  + T+D R+ + 
Sbjct  60   GWLAGVAIVPLDDAILAAAEAVSPSSVATLDAIHLATALQLAAERHIASIMTFDARLAEG  119

Query  119  AKTLGMAVIAPS  130
            A+  G+ VI PS
Sbjct  120  AREHGLDVITPS  131


>gi|307701081|ref|ZP_07638106.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris FB024-16]
 gi|307614076|gb|EFN93320.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris FB024-16]
Length=87

 Score = 63.9 bits (154),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 36/79 (46%), Positives = 52/79 (66%), Gaps = 0/79 (0%)

Query  52   GESARKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTY  111
            G + R   R  L  L+L+R+  ++ DLAG L P  LR+LDAIHLATA ++G DL  L TY
Sbjct  6    GVAQRGQARAILDALNLVRISSQICDLAGLLEPTVLRSLDAIHLATALQVGDDLEALVTY  65

Query  112  DDRMRDAAKTLGMAVIAPS  130
            D R+  AA+ +G+ +++P 
Sbjct  66   DLRLGVAAQMVGIPLLSPG  84


>gi|306818894|ref|ZP_07452615.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304648296|gb|EFM45600.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
Length=97

 Score = 63.9 bits (154),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 36/79 (46%), Positives = 52/79 (66%), Gaps = 0/79 (0%)

Query  52   GESARKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTY  111
            G + R   R  L  L+L+R+  ++ DLAG L P  LR+LDAIHLATA ++G DL  L TY
Sbjct  16   GVAQRGQARAILDALNLVRISSQICDLAGLLEPTVLRSLDAIHLATALQVGDDLEALVTY  75

Query  112  DDRMRDAAKTLGMAVIAPS  130
            D R+  AA+ +G+ +++P 
Sbjct  76   DLRLGVAAQMVGIPLLSPG  94


>gi|86741564|ref|YP_481964.1| PilT protein-like protein [Frankia sp. CcI3]
 gi|86568426|gb|ABD12235.1| PilT protein-like [Frankia sp. CcI3]
Length=129

 Score = 63.5 bits (153),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 50/127 (40%), Positives = 68/127 (54%), Gaps = 1/127 (0%)

Query  5    YLDSSAIVKLAVREPESDALRRYLRTRH-PRVSSALARAEVMRALLDKGESARKAGRRAL  63
            YLDSSA++KL   E  + ALR +L  R    VSSAL   EV RAL     +A       L
Sbjct  3    YLDSSALMKLTHPERGTRALRSWLAVRPGVAVSSALVMLEVTRALRRSDPAALPRIPDVL  62

Query  64   AHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTLG  123
            + + L+ +D+ ++  A  L    LR+LDA+HLATA RL        +YD R+  AA   G
Sbjct  63   SRITLVPIDQPIMVSAAALTDPLLRSLDALHLATALRLDAPSLVFVSYDKRLSTAAAQEG  122

Query  124  MAVIAPS  130
            + V  P+
Sbjct  123  LTVAVPA  129


>gi|284029011|ref|YP_003378942.1| hypothetical protein Kfla_1038 [Kribbella flavida DSM 17836]
 gi|283808304|gb|ADB30143.1| hypothetical protein Kfla_1038 [Kribbella flavida DSM 17836]
Length=134

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 46/133 (35%), Positives = 70/133 (53%), Gaps = 6/133 (4%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPR---VSSALARAEVMRALLDKGESARKAGR  60
            IYLD+ A++K    E ES ALR++     P    ++S LA+ E+ R LL  G   ++   
Sbjct  2    IYLDACALLKFIKPEKESAALRKWREALPPDTELLTSELAKLEITRTLLRAGVDHQQVPY  61

Query  61   ---RALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRD  117
               +A+  + ++ +   VL  A       L +LDAIHLA+A+    DL +  TYD  +  
Sbjct  62   FTGQAVRGIYVVDLSSTVLARAMAYRTARLGSLDAIHLASAEPFRADLEQFVTYDKELSG  121

Query  118  AAKTLGMAVIAPS  130
            AA  LG  V+AP+
Sbjct  122  AAAELGFPVLAPA  134


>gi|256372388|ref|YP_003110212.1| PilT protein domain-containing protein [Acidimicrobium ferrooxidans 
DSM 10331]
 gi|256008972|gb|ACU54539.1| PilT protein domain protein [Acidimicrobium ferrooxidans DSM 
10331]
Length=130

 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 52/128 (41%), Positives = 71/128 (56%), Gaps = 1/128 (0%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPRV-SSALARAEVMRALLDKGESARKAGRRA  62
             YLD+SA  KL V EP S+A+  +  +   +V +S L R E++RA         +  R  
Sbjct  3    FYLDTSAAAKLVVAEPASEAMASWAASHETQVIASDLLRTELLRATRRAAPDRMQRARSV  62

Query  63   LAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTL  122
            L  L L  +    L+ A  L P ELR+LDA+HLA A  LG +L  + TYD+RM  AA   
Sbjct  63   LDALTLFNLTSATLERAATLDPEELRSLDALHLAAALELGDELDGIVTYDNRMAAAASQY  122

Query  123  GMAVIAPS  130
            G+AVI P+
Sbjct  123  GVAVIVPT  130


>gi|300790923|ref|YP_003771214.1| hypothetical protein AMED_9123 [Amycolatopsis mediterranei U32]
 gi|299800437|gb|ADJ50812.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
 gi|340532619|gb|AEK47824.1| hypothetical protein RAM_46795 [Amycolatopsis mediterranei S699]
Length=138

 Score = 61.6 bits (148),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 50/129 (39%), Positives = 64/129 (50%), Gaps = 3/129 (2%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPR--VSSALARAEVMRALLDKGESARKAGRR  61
            IYLD++A+VKL   E ES AL  +L  R     V+S LA  EV RALL            
Sbjct  2    IYLDTAALVKLIRHEAESAALVDWLDERQGTVLVTSTLAEVEVSRALLRSDPGLLTDVPA  61

Query  62   ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQR-LGVDLGRLCTYDDRMRDAAK  120
             +A +    +D  V   A      +LR+LDAIHLATA    G  L    TYD R+   A+
Sbjct  62   VMARVAKYEIDDVVRRTAAAYPSPDLRSLDAIHLATAHAVFGRQLTSFVTYDKRLLAVAE  121

Query  121  TLGMAVIAP  129
             LG+   +P
Sbjct  122  ALGLPTDSP  130


>gi|269977174|ref|ZP_06184147.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris 28-1]
 gi|269934477|gb|EEZ91038.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris 28-1]
Length=87

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 35/75 (47%), Positives = 49/75 (66%), Gaps = 0/75 (0%)

Query  56   RKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRM  115
            R   R  L  L+L+R+  ++ DLAG L P  LR+LDAIHLATA ++G DL  L TYD R+
Sbjct  10   RGQARAILDALNLVRISSQICDLAGLLEPAVLRSLDAIHLATALQVGDDLEALVTYDLRL  69

Query  116  RDAAKTLGMAVIAPS  130
              AA+  G+ +++P 
Sbjct  70   GVAAQMGGIPLLSPG  84


>gi|227875583|ref|ZP_03993723.1| hypothetical protein HMPREF0577_1024 [Mobiluncus mulieris ATCC 
35243]
 gi|227843919|gb|EEJ54088.1| hypothetical protein HMPREF0577_1024 [Mobiluncus mulieris ATCC 
35243]
Length=97

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 35/75 (47%), Positives = 49/75 (66%), Gaps = 0/75 (0%)

Query  56   RKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRM  115
            R   R  L  L+L+R+  ++ DLAG L P  LR+LDAIHLATA ++G DL  L TYD R+
Sbjct  20   RGQARAILDALNLVRISSQICDLAGLLEPAVLRSLDAIHLATALQVGDDLEALVTYDLRL  79

Query  116  RDAAKTLGMAVIAPS  130
              AA+  G+ +++P 
Sbjct  80   GVAAQMGGIPLLSPG  94


>gi|111220042|ref|YP_710836.1| hypothetical protein FRAAL0552 [Frankia alni ACN14a]
 gi|111147574|emb|CAJ59227.1| hypothetical protein; putative PilT domain [Frankia alni ACN14a]
Length=138

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 50/136 (37%), Positives = 72/136 (53%), Gaps = 16/136 (11%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTR-HPR--VSSALARAEVMR-------ALLDKGE  53
            IYLD+SA+ K+ + E ESD LR++L  +  P   VSSAL   E+ R       A+L   E
Sbjct  5    IYLDTSALAKMFIAEKESDDLRQWLVEQVQPLRLVSSALLAVELTRLLGLINPAILGLAE  64

Query  54   SARKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDD  113
            S   +       +DL+++   +L  A  + P  LRTLDAIHLATA  L   L  + +YD 
Sbjct  65   SFLSS------DVDLVQITPPLLADASRVPPARLRTLDAIHLATALDLRDSLDIVLSYDK  118

Query  114  RMRDAAKTLGMAVIAP  129
             + +A    G+   +P
Sbjct  119  LLIEAVSASGLVPASP  134


>gi|124516076|gb|EAY57585.1| conserved hypothetical protein [Leptospirillum rubarum]
 gi|206603762|gb|EDZ40242.1| Conserved protein of unknown function [Leptospirillum sp. Group 
II '5-way CG']
Length=156

 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 43/142 (31%), Positives = 65/142 (46%), Gaps = 19/142 (13%)

Query  3    AIYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESAR------  56
            A+YLDSSAIVK  V EP    +R++  +     +S +A  EV+ A   K  S        
Sbjct  4    ALYLDSSAIVKFYVHEPHYQNVRQWAESADILATSEIAYTEVVSAFSQKVRSEEIGWDYV  63

Query  57   -----KAGRRALAHLDLLRVDKRVLDLAGGLLP--FELRTLDAIHLATAQRLGVDLGR--  107
                 K  +     L ++R+D   L+ A  +L   F LR +D++HL  A      +    
Sbjct  64   SQVLPKLNQLWFGRLAVVRIDP--LEAAQYVLSPTFPLRAMDSVHLHAAIAFRSQMPEYS  121

Query  108  --LCTYDDRMRDAAKTLGMAVI  127
               C++D R+  AA T G  V+
Sbjct  122  VMFCSFDRRLIQAANTYGFRVL  143


>gi|336177878|ref|YP_004583253.1| hypothetical protein FsymDg_1894 [Frankia symbiont of Datisca 
glomerata]
 gi|334858858|gb|AEH09332.1| hypothetical protein FsymDg_1894 [Frankia symbiont of Datisca 
glomerata]
Length=136

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 52/134 (39%), Positives = 68/134 (51%), Gaps = 10/134 (7%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDK----GESA  55
            IYLDSSAI+K  V E +S AL   +   H      VSS+LA  EV  AL  +      SA
Sbjct  3    IYLDSSAILKRLVAETDSLALVAAVDKHHEDGDLLVSSSLAWIEVTHALRARFGTDSASA  62

Query  56   RKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRM  115
                  AL+ +    +   V+ LA  + P  LR+LDAIHL +A  L  D  ++ TYDDR+
Sbjct  63   TVHADAALSGVAEHPLSPEVVSLARRIGPAVLRSLDAIHLTSALLLDAD--QMLTYDDRL  120

Query  116  RDAAKTLGMAVIAP  129
              A    G+   AP
Sbjct  121  AMACAQSGLVFTAP  134


>gi|325067177|ref|ZP_08125850.1| PilT protein domain-containing protein [Actinomyces oris K20]
Length=131

 Score = 54.7 bits (130),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 47/135 (35%), Positives = 69/135 (52%), Gaps = 9/135 (6%)

Query  1    MAAIYLDSSAIVKLAVREPESDALRRYLRTRHPR-----VSSALARAEVMRALLDKGESA  55
            M+  YLD+SA +KL + E ES+ L  +L T H        SS L   E+  A   +GE  
Sbjct  1    MSVYYLDTSAALKLLIEEKESEPLAAWL-TSHTTDGDSLCSSFLLHTELHCAARRRGELN  59

Query  56   RKAGRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRM  115
            ++A    L+ +DL+ V +  L  A       LR  DAIHL  A  L +    + TYD  M
Sbjct  60   QEAVASLLSGIDLIDVSRSHLTDAAR-TSMGLRAADAIHLTAA--LDIQADAIVTYDIEM  116

Query  116  RDAAKTLGMAVIAPS  130
            ++AA+   ++ +APS
Sbjct  117  QNAARYCNLSPVAPS  131


>gi|314971342|gb|EFT15440.1| toxin-antitoxin system, toxin component, PIN domain protein [Propionibacterium 
acnes HL037PA3]
 gi|328906281|gb|EGG26056.1| PilT protein domain protein [Propionibacterium humerusii P08]
Length=71

 Score = 54.7 bits (130),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 30/51 (59%), Positives = 37/51 (73%), Gaps = 3/51 (5%)

Query  81   GLLPFE-LRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTLGMAVIAPS  130
            GLLP + LR+LDA+HLATA  LGVD   L TYD R++  A  +GM V+APS
Sbjct  23   GLLPGQNLRSLDALHLATAIDLGVD--ALVTYDQRLQSTAHEIGMPVVAPS  71


>gi|229821860|ref|YP_002883386.1| twitching mobility protein PilT [Beutenbergia cavernae DSM 12333]
 gi|229567773|gb|ACQ81624.1| PilT protein domain protein [Beutenbergia cavernae DSM 12333]
Length=131

 Score = 54.3 bits (129),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 47/131 (36%), Positives = 66/131 (51%), Gaps = 4/131 (3%)

Query  1    MAAIYLDSSAIVKLAVREPESDALRRYLRTR--HPRVSSALARAEVMRALLDKGESARKA  58
            MA  YLD+SA  KL   E ES AL  YLR       V+S +   E++R     G + R  
Sbjct  1    MALTYLDTSASAKLIAVEAESAALADYLRASPDAEAVTSVVGIVELLRVGARLGPAQRLR  60

Query  59   GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA  118
                 A L  + + + +   A    P  LRTLDAIH+A+A   G +   + +YD R+ +A
Sbjct  61   AVDLAARLGTIALTESIARAAADAAPANLRTLDAIHVASAVVAGAE--SVVSYDARLSEA  118

Query  119  AKTLGMAVIAP  129
            A   G+ V+AP
Sbjct  119  AVAAGLRVVAP  129


>gi|336179976|ref|YP_004585351.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334860956|gb|AEH11430.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=138

 Score = 53.9 bits (128),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 45/130 (35%), Positives = 66/130 (51%), Gaps = 4/130 (3%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTR-HPR--VSSALARAEVMRALLDKGESARKAGR  60
            +YLD+SA+ KL + E E+  LR++   +  P   VSS L   E+ R L     +      
Sbjct  5    VYLDTSALAKLFIAEKETPDLRQWFADQVEPLRLVSSTLLAVELTRLLNLVNPTMLGPAE  64

Query  61   RAL-AHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAA  119
              L A +DL+ +   +L  A  + P  LRTLDAIHLATA  L   L  + +YD  + +A 
Sbjct  65   SFLSADVDLVEITPPLLGDAARVPPPRLRTLDAIHLATALDLRDSLDVVLSYDKLLVEAV  124

Query  120  KTLGMAVIAP  129
               G+   +P
Sbjct  125  HASGLPAASP  134


>gi|336178692|ref|YP_004584067.1| hypothetical protein FsymDg_2810 [Frankia symbiont of Datisca 
glomerata]
 gi|334859672|gb|AEH10146.1| hypothetical protein FsymDg_2810 [Frankia symbiont of Datisca 
glomerata]
Length=135

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 48/132 (37%), Positives = 62/132 (47%), Gaps = 6/132 (4%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRH--PRVSSALARAEVMRALLDKGESARKAGRR  61
            IYLDS+A++KL   EP +  L  +L      P VSS L   E  RAL      A      
Sbjct  2    IYLDSAAVIKLVRAEPFTVDLLDWLDAHRALPLVSSVLVEVEASRALRRCAPQALGRLPV  61

Query  62   ALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRL----GVDLGRLCTYDDRMRD  117
             LA L  L ++  V  +A      +LR+LDA+HLATA  L    G  L    TYD R+  
Sbjct  62   TLARLYRLEINATVRAVAAAYDDPQLRSLDAVHLATATVLTDQPGARLEAFVTYDKRLLA  121

Query  118  AAKTLGMAVIAP  129
             A   G+   +P
Sbjct  122  IAARAGLPTASP  133


>gi|336115824|ref|YP_004570590.1| hypothetical protein MLP_01730 [Microlunatus phosphovorus NM-1]
 gi|334683602|dbj|BAK33187.1| hypothetical protein MLP_01730 [Microlunatus phosphovorus NM-1]
Length=139

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 31/67 (47%), Positives = 43/67 (65%), Gaps = 1/67 (1%)

Query  63   LAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDAAKTL  122
            +A L LL VD  ++  A  ++P  LR+LDA+HLA AQR+GVD   + T+D  M   A++L
Sbjct  72   VAELTLLTVDDALVAEAAAIVP-HLRSLDALHLAGAQRIGVDAVTIVTHDLGMAKTAESL  130

Query  123  GMAVIAP  129
            G AV  P
Sbjct  131  GFAVHDP  137


>gi|297570943|ref|YP_003696717.1| PilT protein domain protein [Arcanobacterium haemolyticum DSM 
20595]
 gi|296931290|gb|ADH92098.1| PilT protein domain protein [Arcanobacterium haemolyticum DSM 
20595]
Length=134

 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 42/132 (32%), Positives = 67/132 (51%), Gaps = 9/132 (6%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDKGESARKAG----  59
            IYLD+SA  KL + E  ++ ++ YLR+    VSS L R E++R L+   +S  +      
Sbjct  2    IYLDTSAAAKLFLPESGTERVKGYLRSGETIVSSTLLRTELIRTLVRSLDSVVEHTLIPD  61

Query  60   --RRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGV--DLGRLCTYDDRM  115
                 L  + L+ V   +L  + G+L    +TLDA+H+ATA  +    D  ++ T+D   
Sbjct  62   YVDALLPAITLISVSDPILSQSEGILGHS-KTLDALHIATALSVNSSGDPVKILTFDKNF  120

Query  116  RDAAKTLGMAVI  127
               AK  G  V+
Sbjct  121  AACAKRCGFDVL  132


>gi|145223797|ref|YP_001134475.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145216283|gb|ABP45687.1| PilT protein domain protein [Mycobacterium gilvum PYR-GCK]
Length=235

 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 46/133 (35%), Positives = 67/133 (51%), Gaps = 11/133 (8%)

Query  5    YLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRAL--------LDKGE--S  54
            YLD+SA V L + EP S A RR+       VSS L   E   AL        L +GE   
Sbjct  91   YLDTSAFVPLLIDEPASVACRRFWDDADAIVSSRLLYVETAAALAQAGRIGRLTEGEHLQ  150

Query  55   ARKAGRRALAHLDLLRVDKRVLDLAGGLLP-FELRTLDAIHLATAQRLGVDLGRLCTYDD  113
            AR+   +  + +D++ VD++++  A  L     LR  DA+H A+A++L  D     + D 
Sbjct  151  ARRRLGQMWSEMDVIEVDEQIVTRAADLAHRLSLRGYDAVHAASAEQLDDDDVAAASGDQ  210

Query  114  RMRDAAKTLGMAV  126
            R+  A   LGMA+
Sbjct  211  RLLSAWMDLGMAI  223


>gi|94267146|ref|ZP_01290779.1| PilT protein-like [delta proteobacterium MLMS-1]
 gi|94268899|ref|ZP_01291317.1| PilT protein-like [delta proteobacterium MLMS-1]
 gi|93451421|gb|EAT02269.1| PilT protein-like [delta proteobacterium MLMS-1]
 gi|93452142|gb|EAT02813.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=148

 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 47/137 (35%), Positives = 68/137 (50%), Gaps = 20/137 (14%)

Query  5    YLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALLDK----GESARKAGR  60
            YLD+SA+ K  + E  S+ + RY++     V S L   E MR+LL +    GE       
Sbjct  8    YLDTSALAKWYLHEVGSETVTRYIQELDIAVISQLTMVE-MRSLLARRRRMGEIDATLEA  66

Query  61   R---------ALAHLDLLRVDKRVLDLAGGLLP----FELRTLDAIHLATAQRLGVDLGR  107
            R         ALAHL L  V+  +   A  L+     F L+TLDA+HLA  +  G++  +
Sbjct  67   RIFATFQEDIALAHLQLYPVEVSLWSEAANLIACHPDFPLKTLDALHLAVVKLHGIE--Q  124

Query  108  LCTYDDRMRDAAKTLGM  124
            L T D  M +AA+  G+
Sbjct  125  LATADRVMANAAEATGI  141


>gi|78224268|ref|YP_386015.1| hypothetical protein Gmet_3076 [Geobacter metallireducens GS-15]
 gi|78195523|gb|ABB33290.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
Length=142

 Score = 51.2 bits (121),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 43/142 (31%), Positives = 74/142 (53%), Gaps = 22/142 (15%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPRVSSALARAEVMRALL---DKGESARK---  57
            +YLD+S++VKL V E  SD +R+++ +     +  +A  E++ AL    ++G+  R+   
Sbjct  3    LYLDTSSLVKLYVEEVCSDTVRQWVESAEAVATCRVAYPEMLSALTRRHNRGDLPREDCE  62

Query  58   ------AGRRALAHLDLLRVDKRVLDLAGGLL-PFELRTLDAIHLATAQRLGVDLGRL--  108
                  AG     H   L  D+     AG L+  + LR  DA+HLA A+ L  D G +  
Sbjct  63   VVAECFAGE--WEHFVALDFDEIE---AGHLVRKYGLRGFDAVHLAAAKLLSNDCGAIEV  117

Query  109  --CTYDDRMRDAAKTLGMAVIA  128
               ++D+++  AA+  G A++A
Sbjct  118  AFSSFDNKLNGAAEAEGFALLA  139


>gi|88812276|ref|ZP_01127527.1| hypothetical protein NB231_02713 [Nitrococcus mobilis Nb-231]
 gi|88790527|gb|EAR21643.1| hypothetical protein NB231_02713 [Nitrococcus mobilis Nb-231]
Length=143

 Score = 50.4 bits (119),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 44/135 (33%), Positives = 69/135 (52%), Gaps = 14/135 (10%)

Query  4    IYLDSSAIVKLAVREPESDALRRYLRT---------RHPRVSSALARAEVMRALLDKGES  54
            +YLD+SA +KL + E  S A R+ +            +  + +A A+A  M+ L D   +
Sbjct  3    VYLDTSAFLKLYLEEEGSKATRQLVDAAVAVCTHVITYAEMCAAFAQAVRMQRLTDAEWT  62

Query  55   ARKAGRRA-LAHLDLLRVDKRVLDLAGGLLP-FELRTLDAIHLATAQRL---GVDLGRLC  109
             +K    A    L +L +D+ ++  AG L   F LR  D++HLA A+R+     D  +L 
Sbjct  63   HQKDCFEADWNALQVLFIDEPLVRRAGKLAEGFRLRGFDSVHLAAAERVWRQAPDNFQLA  122

Query  110  TYDDRMRDAAKTLGM  124
             +D R+  AA TLGM
Sbjct  123  AFDVRLVSAACTLGM  137



Lambda     K      H
   0.324    0.137    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127765705240


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40