BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3395c Length=204 Score E Sequences producing significant alignments: (Bits) Value gi|15842988|ref|NP_338025.1| hypothetical protein MT3502 [Mycoba... 390 9e-107 gi|57117102|ref|NP_217912.2| hypothetical protein Rv3395c [Mycob... 389 2e-106 gi|289444949|ref|ZP_06434693.1| conserved hypothetical protein [... 387 6e-106 gi|289759555|ref|ZP_06518933.1| conserved hypothetical protein [... 387 6e-106 gi|31794575|ref|NP_857068.1| hypothetical protein Mb3427c [Mycob... 386 1e-105 gi|308406147|ref|ZP_07495287.2| hypothetical protein TMLG_02984 ... 338 2e-91 gi|289755524|ref|ZP_06514902.1| conserved hypothetical protein [... 328 2e-88 gi|254366008|ref|ZP_04982053.1| conserved hypothetical protein [... 327 8e-88 gi|308380683|ref|ZP_07669251.1| hypothetical protein TMKG_03741 ... 326 1e-87 gi|183981172|ref|YP_001849463.1| hypothetical protein MMAR_1150 ... 269 2e-70 gi|118616683|ref|YP_905015.1| hypothetical protein MUL_0915 [Myc... 267 8e-70 gi|240167853|ref|ZP_04746512.1| hypothetical protein MkanA1_0095... 253 1e-65 gi|296168798|ref|ZP_06850483.1| conserved hypothetical protein [... 251 6e-65 gi|254776775|ref|ZP_05218291.1| hypothetical protein MaviaA2_192... 249 2e-64 gi|41409586|ref|NP_962422.1| hypothetical protein MAP3488c [Myco... 248 3e-64 gi|336459714|gb|EGO38639.1| hypothetical protein MAPs_00740 [Myc... 248 3e-64 gi|118466153|ref|YP_883481.1| hypothetical protein MAV_4346 [Myc... 246 1e-63 gi|118472482|ref|YP_885997.1| hypothetical protein MSMEG_1620 [M... 243 8e-63 gi|315445829|ref|YP_004078708.1| hypothetical protein Mspyr1_431... 231 4e-59 gi|145225475|ref|YP_001136153.1| hypothetical protein Mflv_4899 ... 231 5e-59 gi|254822977|ref|ZP_05227978.1| hypothetical protein MintA_23819... 229 2e-58 gi|342861595|ref|ZP_08718242.1| hypothetical protein MCOL_22021 ... 216 2e-54 gi|120402531|ref|YP_952360.1| hypothetical protein Mvan_1522 [My... 211 4e-53 gi|108798145|ref|YP_638342.1| hypothetical protein Mmcs_1174 [My... 201 4e-50 gi|126433804|ref|YP_001069495.1| hypothetical protein Mjls_1201 ... 199 2e-49 gi|169630792|ref|YP_001704441.1| hypothetical protein MAB_3713c ... 199 2e-49 gi|333991857|ref|YP_004524471.1| hypothetical protein JDM601_321... 199 3e-49 gi|343928292|ref|ZP_08767745.1| hypothetical protein GOALK_112_0... 146 2e-33 gi|111023175|ref|YP_706147.1| hypothetical protein RHA1_ro06212 ... 144 5e-33 gi|262201691|ref|YP_003272899.1| hypothetical protein Gbro_1746 ... 144 1e-32 gi|325675547|ref|ZP_08155231.1| hypothetical protein HMPREF0724_... 143 1e-32 gi|226365681|ref|YP_002783464.1| hypothetical protein ROP_62720 ... 142 2e-32 gi|229489337|ref|ZP_04383200.1| conserved hypothetical protein [... 142 2e-32 gi|226184558|dbj|BAH32662.1| hypothetical protein RER_19540 [Rho... 142 4e-32 gi|312140816|ref|YP_004008152.1| hypothetical protein REQ_34820 ... 137 9e-31 gi|77404583|ref|YP_345159.1| hypothetical protein pREC1_0098 [Rh... 123 1e-26 gi|326381916|ref|ZP_08203609.1| hypothetical protein SCNU_03192 ... 119 3e-25 gi|333921670|ref|YP_004495251.1| hypothetical protein AS9A_4017 ... 118 4e-25 gi|77454674|ref|YP_345542.1| hypothetical protein pREL1_0107 [Rh... 117 7e-25 gi|229493322|ref|ZP_04387113.1| conserved hypothetical protein [... 117 7e-25 gi|54022872|ref|YP_117114.1| hypothetical protein nfa9050 [Nocar... 107 1e-21 gi|296138652|ref|YP_003645895.1| hypothetical protein Tpau_0922 ... 104 6e-21 gi|134103092|ref|YP_001108753.1| hypothetical protein SACE_6662 ... 92.8 3e-17 gi|190015945|ref|YP_001965153.1| hypothetical protein PNSL1.050 ... 87.0 1e-15 gi|258653324|ref|YP_003202480.1| hypothetical protein Namu_3158 ... 85.9 3e-15 gi|296120126|ref|ZP_06838680.1| conserved hypothetical protein [... 84.3 1e-14 gi|332670247|ref|YP_004453255.1| hypothetical protein Celf_1736 ... 81.3 8e-14 gi|213964829|ref|ZP_03393028.1| conserved hypothetical protein [... 79.3 3e-13 gi|340795238|ref|YP_004760701.1| hypothetical protein CVAR_2281 ... 76.3 2e-12 gi|300789277|ref|YP_003769568.1| hypothetical protein AMED_7452 ... 75.5 4e-12 >gi|15842988|ref|NP_338025.1| hypothetical protein MT3502 [Mycobacterium tuberculosis CDC1551] gi|13883328|gb|AAK47839.1| hypothetical protein MT3502 [Mycobacterium tuberculosis CDC1551] Length=227 Score = 390 bits (1001), Expect = 9e-107, Method: Compositional matrix adjust. Identities = 204/204 (100%), Positives = 204/204 (100%), Gaps = 0/204 (0%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG Sbjct 24 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 83 Query 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI Sbjct 84 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 143 Query 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 180 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA Sbjct 144 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 203 Query 181 LRGVPTPGLGRISGVRLQINGRGR 204 LRGVPTPGLGRISGVRLQINGRGR Sbjct 204 LRGVPTPGLGRISGVRLQINGRGR 227 >gi|57117102|ref|NP_217912.2| hypothetical protein Rv3395c [Mycobacterium tuberculosis H37Rv] gi|148663258|ref|YP_001284781.1| hypothetical protein MRA_3434 [Mycobacterium tuberculosis H37Ra] gi|148824603|ref|YP_001289356.1| hypothetical protein TBFG_13429 [Mycobacterium tuberculosis F11] 46 more sequence titles Length=204 Score = 389 bits (998), Expect = 2e-106, Method: Compositional matrix adjust. Identities = 204/204 (100%), Positives = 204/204 (100%), Gaps = 0/204 (0%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG Sbjct 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 Query 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI Sbjct 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 Query 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 180 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA Sbjct 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 180 Query 181 LRGVPTPGLGRISGVRLQINGRGR 204 LRGVPTPGLGRISGVRLQINGRGR Sbjct 181 LRGVPTPGLGRISGVRLQINGRGR 204 >gi|289444949|ref|ZP_06434693.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289449092|ref|ZP_06438836.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289571631|ref|ZP_06451858.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] 7 more sequence titles Length=204 Score = 387 bits (994), Expect = 6e-106, Method: Compositional matrix adjust. Identities = 203/204 (99%), Positives = 203/204 (99%), Gaps = 0/204 (0%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 MT AFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG Sbjct 1 MTVAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 Query 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI Sbjct 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 Query 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 180 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA Sbjct 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 180 Query 181 LRGVPTPGLGRISGVRLQINGRGR 204 LRGVPTPGLGRISGVRLQINGRGR Sbjct 181 LRGVPTPGLGRISGVRLQINGRGR 204 >gi|289759555|ref|ZP_06518933.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289715119|gb|EFD79131.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] Length=204 Score = 387 bits (994), Expect = 6e-106, Method: Compositional matrix adjust. Identities = 203/203 (100%), Positives = 203/203 (100%), Gaps = 0/203 (0%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG Sbjct 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 Query 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI Sbjct 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 Query 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 180 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA Sbjct 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 180 Query 181 LRGVPTPGLGRISGVRLQINGRG 203 LRGVPTPGLGRISGVRLQINGRG Sbjct 181 LRGVPTPGLGRISGVRLQINGRG 203 >gi|31794575|ref|NP_857068.1| hypothetical protein Mb3427c [Mycobacterium bovis AF2122/97] gi|121639319|ref|YP_979543.1| hypothetical protein BCG_3464c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991816|ref|YP_002646505.1| hypothetical protein JTY_3464 [Mycobacterium bovis BCG str. Tokyo 172] 8 more sequence titles Length=204 Score = 386 bits (991), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 202/204 (99%), Positives = 203/204 (99%), Gaps = 0/204 (0%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 MT AFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG Sbjct 1 MTVAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 Query 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLA+IPDPGTDPVEVAAVLI Sbjct 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAMIPDPGTDPVEVAAVLI 120 Query 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 180 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA Sbjct 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 180 Query 181 LRGVPTPGLGRISGVRLQINGRGR 204 LRGVPTPGLGRISGVRLQINGRGR Sbjct 181 LRGVPTPGLGRISGVRLQINGRGR 204 >gi|308406147|ref|ZP_07495287.2| hypothetical protein TMLG_02984 [Mycobacterium tuberculosis SUMu012] gi|308364341|gb|EFP53192.1| hypothetical protein TMLG_02984 [Mycobacterium tuberculosis SUMu012] Length=233 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 177/177 (100%), Positives = 177/177 (100%), Gaps = 0/177 (0%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG Sbjct 57 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 116 Query 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI Sbjct 117 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 176 Query 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEI 177 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEI Sbjct 177 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEI 233 >gi|289755524|ref|ZP_06514902.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289696111|gb|EFD63540.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length=205 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 191/195 (98%), Positives = 192/195 (99%), Gaps = 0/195 (0%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 MT AFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG Sbjct 1 MTVAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 Query 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI Sbjct 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 Query 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 180 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA Sbjct 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 180 Query 181 LRGVPTPGLGRISGV 195 LRGVP G+GRISGV Sbjct 181 LRGVPPRGVGRISGV 195 >gi|254366008|ref|ZP_04982053.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|134151521|gb|EBA43566.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] Length=205 Score = 327 bits (837), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 194/205 (95%), Positives = 195/205 (96%), Gaps = 1/205 (0%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG Sbjct 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 Query 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI Sbjct 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 Query 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 180 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITP Sbjct 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPG 180 Query 181 LRGVPTP-GLGRISGVRLQINGRGR 204 +G P G G GVRLQINGRGR Sbjct 181 PQGACPPRGWGGSVGVRLQINGRGR 205 >gi|308380683|ref|ZP_07669251.1| hypothetical protein TMKG_03741 [Mycobacterium tuberculosis SUMu011] gi|308360730|gb|EFP49581.1| hypothetical protein TMKG_03741 [Mycobacterium tuberculosis SUMu011] Length=820 Score = 326 bits (835), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 190/190 (100%), Positives = 190/190 (100%), Gaps = 0/190 (0%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 60 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG Sbjct 91 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSG 150 Query 61 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 120 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI Sbjct 151 ARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLI 210 Query 121 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 180 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA Sbjct 211 DGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA 270 Query 181 LRGVPTPGLG 190 LRGVPTPGLG Sbjct 271 LRGVPTPGLG 280 >gi|183981172|ref|YP_001849463.1| hypothetical protein MMAR_1150 [Mycobacterium marinum M] gi|183174498|gb|ACC39608.1| conserved protein [Mycobacterium marinum M] Length=219 Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 159/206 (78%), Positives = 174/206 (85%), Gaps = 5/206 (2%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGG---PSRSGDLVPAGP--VSLPPGTV 55 MT A ASD+R EN AEQLESLRRQ+A+LS K +G PS +PAG V+LP GTV Sbjct 1 MTTALASDRRHENRAEQLESLRRQIAVLSGKPAGKAVEPSADPLAIPAGVAGVALPRGTV 60 Query 56 GVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEV 115 VLSGARSLLL+MVA+VTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEV Sbjct 61 AVLSGARSLLLNMVAAVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEV 120 Query 116 AAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGY 175 AAVL+DGMDLVVLGL G+RV+R RARAVVARAR +GCTLLVTDGDW+G TRL ARVCGY Sbjct 121 AAVLVDGMDLVVLGLDGQRVSRTRARAVVARARHRGCTLLVTDGDWEGAPTRLEARVCGY 180 Query 176 EITPALRGVPTPGLGRISGVRLQING 201 EIT RG PTPG GRIS VRLQ++G Sbjct 181 EITVGNRGAPTPGFGRISAVRLQVSG 206 >gi|118616683|ref|YP_905015.1| hypothetical protein MUL_0915 [Mycobacterium ulcerans Agy99] gi|118568793|gb|ABL03544.1| conserved protein [Mycobacterium ulcerans Agy99] Length=230 Score = 267 bits (682), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 158/206 (77%), Positives = 173/206 (84%), Gaps = 5/206 (2%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGG---PSRSGDLVPAGP--VSLPPGTV 55 MT A ASD+R EN AEQLESLRRQ+A+LS K +G PS +PAG V+LP GTV Sbjct 12 MTTALASDRRHENRAEQLESLRRQIAVLSGKPAGKAVEPSADPLAIPAGVAGVALPRGTV 71 Query 56 GVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEV 115 VLSGARSLLL+MVA+VTAAGGNAAIVGQPDIGLLAAVEMGADLSRL VIPDPGTDPVEV Sbjct 72 AVLSGARSLLLNMVAAVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLTVIPDPGTDPVEV 131 Query 116 AAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGY 175 AAVL+DGMDLVVLGL G+RV+R RARAVVARAR +GCTLLVTDGDW+G TRL ARVCGY Sbjct 132 AAVLVDGMDLVVLGLDGQRVSRTRARAVVARARHRGCTLLVTDGDWEGAPTRLEARVCGY 191 Query 176 EITPALRGVPTPGLGRISGVRLQING 201 EIT RG PTPG GRIS VRLQ++G Sbjct 192 EITVGNRGAPTPGFGRISAVRLQVSG 217 >gi|240167853|ref|ZP_04746512.1| hypothetical protein MkanA1_00955 [Mycobacterium kansasii ATCC 12478] Length=220 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 159/213 (75%), Positives = 170/213 (80%), Gaps = 12/213 (5%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAG---------PVSLP 51 MTAAFAS + AEQLESLRRQ+A+LS K RS DL+P P LP Sbjct 1 MTAAFASRPPHGSRAEQLESLRRQIAVLSGK---DLVRSDDLLPESESTLAVPELPALLP 57 Query 52 PGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTD 111 GTV +LSGARSLLLSMVA+VTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPG D Sbjct 58 RGTVAMLSGARSLLLSMVAAVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGAD 117 Query 112 PVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAAR 171 PVEVAAVL+DGMDLVVLGLGG RVTR RARAVVARAR KGCTLLVTDGDW+G STRL AR Sbjct 118 PVEVAAVLLDGMDLVVLGLGGHRVTRTRARAVVARARHKGCTLLVTDGDWEGASTRLEAR 177 Query 172 VCGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 VCGYEIT RG PTPG GR+S VRLQ++G R Sbjct 178 VCGYEITAGSRGTPTPGFGRVSRVRLQVSGCAR 210 >gi|296168798|ref|ZP_06850483.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896532|gb|EFG76178.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=229 Score = 251 bits (640), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 154/219 (71%), Positives = 168/219 (77%), Gaps = 22/219 (10%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSR----SGDLVPAG---------- 46 MTAAFA D R E AEQLESLRR+MA+++ + G SR + DL+P Sbjct 1 MTAAFAPDHRPETRAEQLESLRRRMAVITGRTPGPASRPAPCADDLLPESESRLALPRWL 60 Query 47 ----PVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRL 102 P LP GTV VLSGARSLLL +VA+VTAAGGN AIVGQPDIGLLAA EMGADLSR+ Sbjct 61 AESLPAPLPRGTVAVLSGARSLLLGVVAAVTAAGGNVAIVGQPDIGLLAAAEMGADLSRV 120 Query 103 AVIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQ 162 AVIPDPGTDPVEVAAVL+DGMDLVVLGLGGRRV RARAVVARAR KGCT+LVTDGDWQ Sbjct 121 AVIPDPGTDPVEVAAVLVDGMDLVVLGLGGRRVPHTRARAVVARARNKGCTVLVTDGDWQ 180 Query 163 GVSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQING 201 G TRL ARVCGYEITPA R PGLGRIS VRLQ++G Sbjct 181 GAPTRLEARVCGYEITPARR----PGLGRISRVRLQVSG 215 >gi|254776775|ref|ZP_05218291.1| hypothetical protein MaviaA2_19211 [Mycobacterium avium subsp. avium ATCC 25291] Length=229 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 156/215 (73%), Positives = 171/215 (80%), Gaps = 14/215 (6%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSG---DLVPAGP---------- 47 MTAAFAS + E AE+LESLRR+MA +S ++SG S + DL+ A Sbjct 1 MTAAFASSRHEETRAERLESLRRRMAEMSGRMSGAASGAAAPADLLGAESLLALPRWLAE 60 Query 48 -VSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIP 106 V +P G+V VLSGARSLLLSMVA+VTAAGGNAAIVGQPDIGLLAA EMGADLSRLAVIP Sbjct 61 SVRVPRGSVAVLSGARSLLLSMVAAVTAAGGNAAIVGQPDIGLLAAAEMGADLSRLAVIP 120 Query 107 DPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVST 166 DPGTDPVEVAAVL+DGMDLVVLGLGGRRV RARAVVARAR KGCTLLVT GDWQG T Sbjct 121 DPGTDPVEVAAVLVDGMDLVVLGLGGRRVPPTRARAVVARARSKGCTLLVTGGDWQGAPT 180 Query 167 RLAARVCGYEITPALRGVPTPGLGRISGVRLQING 201 RLAARVCGYE+TPA G P PG GRISGVRLQ++G Sbjct 181 RLAARVCGYEVTPAQWGKPAPGFGRISGVRLQVSG 215 >gi|41409586|ref|NP_962422.1| hypothetical protein MAP3488c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398417|gb|AAS06038.1| hypothetical protein MAP_3488c [Mycobacterium avium subsp. paratuberculosis K-10] Length=300 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 156/215 (73%), Positives = 171/215 (80%), Gaps = 14/215 (6%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSG---DLVPAGP---------- 47 MTAAFAS + E AE+LESLRR+MA +S ++SG S + DL+ A Sbjct 72 MTAAFASSRHEETRAERLESLRRRMAEMSGRMSGAASGAAAPADLLGAESLLAMPRWLAE 131 Query 48 -VSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIP 106 V +P G+V VLSGARSLLLSMVA+VTAAGGNAAIVGQPDIGLLAA EMGADLSRLAVIP Sbjct 132 SVWVPRGSVAVLSGARSLLLSMVAAVTAAGGNAAIVGQPDIGLLAAAEMGADLSRLAVIP 191 Query 107 DPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVST 166 DPGTDPVEVAAVL+DGMDLVVLGLGGRRV RARAVVARAR KGCTLLVT GDWQG T Sbjct 192 DPGTDPVEVAAVLVDGMDLVVLGLGGRRVPPTRARAVVARARSKGCTLLVTGGDWQGAPT 251 Query 167 RLAARVCGYEITPALRGVPTPGLGRISGVRLQING 201 RLAARVCGYE+TPA G P PG GRISGVRLQ++G Sbjct 252 RLAARVCGYEVTPAQWGKPAPGFGRISGVRLQVSG 286 >gi|336459714|gb|EGO38639.1| hypothetical protein MAPs_00740 [Mycobacterium avium subsp. paratuberculosis S397] Length=222 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 156/215 (73%), Positives = 171/215 (80%), Gaps = 14/215 (6%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSG---DLVPAGP---------- 47 MTAAFAS + E AE+LESLRR+MA +S ++SG S + DL+ A Sbjct 1 MTAAFASSRHEETRAERLESLRRRMAEMSGRMSGAASGAAAPADLLGAESLLAMPRWLAE 60 Query 48 -VSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIP 106 V +P G+V VLSGARSLLLSMVA+VTAAGGNAAIVGQPDIGLLAA EMGADLSRLAVIP Sbjct 61 SVRVPRGSVAVLSGARSLLLSMVAAVTAAGGNAAIVGQPDIGLLAAAEMGADLSRLAVIP 120 Query 107 DPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVST 166 DPGTDPVEVAAVL+DGMDLVVLGLGGRRV RARAVVARAR KGCTLLVT GDWQG T Sbjct 121 DPGTDPVEVAAVLVDGMDLVVLGLGGRRVPPTRARAVVARARSKGCTLLVTGGDWQGAPT 180 Query 167 RLAARVCGYEITPALRGVPTPGLGRISGVRLQING 201 RLAARVCGYE+TPA G P PG GRISGVRLQ++G Sbjct 181 RLAARVCGYEVTPAQWGKPAPGFGRISGVRLQVSG 215 >gi|118466153|ref|YP_883481.1| hypothetical protein MAV_4346 [Mycobacterium avium 104] gi|118167440|gb|ABK68337.1| conserved hypothetical protein [Mycobacterium avium 104] Length=229 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 155/215 (73%), Positives = 170/215 (80%), Gaps = 14/215 (6%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSG---DLVPAGP---------- 47 MTAAFAS + E AE+LESLRR+MA +S ++SG S + DL+ A Sbjct 1 MTAAFASSRHEETRAERLESLRRRMAEMSGRMSGAASGAAAPADLLGAESLLAMPRWLAE 60 Query 48 -VSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIP 106 V +P G+V VLSGARSLLLSMVA+VTAAGGNAAIVGQPDIGLLAA EMGADLSRLAVIP Sbjct 61 SVRVPRGSVAVLSGARSLLLSMVAAVTAAGGNAAIVGQPDIGLLAAAEMGADLSRLAVIP 120 Query 107 DPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVST 166 DPGTDPVEVAAVL+DGMDLVVLGLGGRRV RARAVVARAR KGCTLLVT GDWQG T Sbjct 121 DPGTDPVEVAAVLVDGMDLVVLGLGGRRVPPTRARAVVARARSKGCTLLVTGGDWQGAPT 180 Query 167 RLAARVCGYEITPALRGVPTPGLGRISGVRLQING 201 RLAARVCGYE+TPA G PG GRISGVRLQ++G Sbjct 181 RLAARVCGYEVTPAQWGKTAPGFGRISGVRLQVSG 215 >gi|118472482|ref|YP_885997.1| hypothetical protein MSMEG_1620 [Mycobacterium smegmatis str. MC2 155] gi|118173769|gb|ABK74665.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=235 Score = 243 bits (621), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 146/225 (65%), Positives = 160/225 (72%), Gaps = 21/225 (9%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSG---GPSRSGDLV-PAG---------- 46 MTAA D R AEQ+E LRR+MA +S KV G S S DL+ PAG Sbjct 1 MTAAADLDVRRLTRAEQVEHLRRKMASVSAKVGSAHRGVSGSDDLISPAGDLLAGPESQD 60 Query 47 -------PVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADL 99 P +LP GTV V GARSL L MVA+VTAAGG+A IVGQPD GLLAAVEMGADL Sbjct 61 GTAPEQLPRTLPRGTVAVARGARSLTLGMVAAVTAAGGHAVIVGQPDAGLLAAVEMGADL 120 Query 100 SRLAVIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDG 159 SRLAVIPDPG DPVEVA+VL+DGMDLVVLGLGGR V +R R + ARARQKGCTLLVTDG Sbjct 121 SRLAVIPDPGADPVEVASVLMDGMDLVVLGLGGRSVPPSRTRVMTARARQKGCTLLVTDG 180 Query 160 DWQGVSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 DWQG S RL ARVCGYE+T A RG PTPG GRI +RL + RGR Sbjct 181 DWQGPSARLEARVCGYEVTGAGRGEPTPGRGRIGRIRLTMRSRGR 225 >gi|315445829|ref|YP_004078708.1| hypothetical protein Mspyr1_43160 [Mycobacterium sp. Spyr1] gi|315264132|gb|ADU00874.1| hypothetical protein Mspyr1_43160 [Mycobacterium sp. Spyr1] Length=235 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 136/211 (65%), Positives = 151/211 (72%), Gaps = 22/211 (10%) Query 15 AEQLESLRRQMALLSEKVSGGPSRSGDLVPAG---------------------PVSLPPG 53 AEQ+E LR+QMA +S KV GG R+ VP P SLP G Sbjct 15 AEQVEQLRKQMAAVSGKV-GGSRRAVAPVPQPTPVSETPDSLLPMPDSLAELLPDSLPRG 73 Query 54 TVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPV 113 TV V+SGARSL LSMVA+VTA GG+ AI+GQPD+GLLAA EMGADLSR+AVIP+PG DPV Sbjct 74 TVAVVSGARSLQLSMVAAVTAQGGHVAIIGQPDVGLLAAAEMGADLSRVAVIPEPGADPV 133 Query 114 EVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVC 173 EVAAVL+DGMDLVVLGLGGR V RAR+VVARARQ+GCTLLVTDGDWQG S RL A V Sbjct 134 EVAAVLMDGMDLVVLGLGGRTVPATRARSVVARARQRGCTLLVTDGDWQGASARLDAHVS 193 Query 174 GYEITPALRGVPTPGLGRISGVRLQINGRGR 204 GYEI GVPTPG GRI VRL + RGR Sbjct 194 GYEIAGGQGGVPTPGCGRIGRVRLAMRARGR 224 >gi|145225475|ref|YP_001136153.1| hypothetical protein Mflv_4899 [Mycobacterium gilvum PYR-GCK] gi|145217961|gb|ABP47365.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=229 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 136/211 (65%), Positives = 151/211 (72%), Gaps = 22/211 (10%) Query 15 AEQLESLRRQMALLSEKVSGGPSRSGDLVPAG---------------------PVSLPPG 53 AEQ+E LR+QMA +S KV GG R+ VP P SLP G Sbjct 9 AEQVEQLRKQMAAVSGKV-GGSRRAVAPVPQPTPVSETPDSLLPMPDSLAELLPDSLPRG 67 Query 54 TVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPV 113 TV V+SGARSL LSMVA+VTA GG+ AI+GQPD+GLLAA EMGADLSR+AVIP+PG DPV Sbjct 68 TVAVVSGARSLQLSMVAAVTAQGGHVAIIGQPDVGLLAAAEMGADLSRVAVIPEPGADPV 127 Query 114 EVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVC 173 EVAAVL+DGMDLVVLGLGGR V RAR+VVARARQ+GCTLLVTDGDWQG S RL A V Sbjct 128 EVAAVLMDGMDLVVLGLGGRTVPATRARSVVARARQRGCTLLVTDGDWQGASARLDAHVS 187 Query 174 GYEITPALRGVPTPGLGRISGVRLQINGRGR 204 GYEI GVPTPG GRI VRL + RGR Sbjct 188 GYEIAGGQGGVPTPGCGRIGRVRLAMRARGR 218 >gi|254822977|ref|ZP_05227978.1| hypothetical protein MintA_23819 [Mycobacterium intracellulare ATCC 13950] Length=202 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 139/175 (80%), Positives = 145/175 (83%), Gaps = 4/175 (2%) Query 27 LLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPD 86 L SE P DL+PA LP GTV VLSGARSLLLSMVA+VTAAGGNAAIVGQPD Sbjct 18 LDSESQLALPQWLADLLPA---PLPRGTVAVLSGARSLLLSMVAAVTAAGGNAAIVGQPD 74 Query 87 IGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVAR 146 IGLLAA EMGADLSRLAVIPDPGTDPVEVAAVL+DGMDLVVLGLGG RV RARAVVAR Sbjct 75 IGLLAAAEMGADLSRLAVIPDPGTDPVEVAAVLVDGMDLVVLGLGGHRVPPTRARAVVAR 134 Query 147 ARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQING 201 AR KGCTLLVT GDWQG TRLAARVCGYEITP G+P PG GRISGVRLQ++G Sbjct 135 ARSKGCTLLVTGGDWQGAPTRLAARVCGYEITPHW-GMPAPGFGRISGVRLQVSG 188 >gi|342861595|ref|ZP_08718242.1| hypothetical protein MCOL_22021 [Mycobacterium colombiense CECT 3035] gi|342131084|gb|EGT84373.1| hypothetical protein MCOL_22021 [Mycobacterium colombiense CECT 3035] Length=203 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/166 (80%), Positives = 140/166 (85%), Gaps = 7/166 (4%) Query 36 PSRSGDLVPAGPVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEM 95 P DL+PA +P GTV VLSGARSLLLSMVA+VTAAGGNAAIVGQPDIGLLAA EM Sbjct 31 PPWLADLLPA---PVPRGTVAVLSGARSLLLSMVAAVTAAGGNAAIVGQPDIGLLAAAEM 87 Query 96 GADLSRLAVIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLL 155 GADLSRLAVIPDPGTDPVEVAAVL+DGMDLVVLGLGGRRV +RARAVVARAR KGCTLL Sbjct 88 GADLSRLAVIPDPGTDPVEVAAVLVDGMDLVVLGLGGRRVPPSRARAVVARARNKGCTLL 147 Query 156 VTDGDWQGVSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQING 201 VT GDWQG TRLAARVCGY+IT R PG GRI GVRLQ++G Sbjct 148 VTGGDWQGAPTRLAARVCGYDITADSR----PGFGRIGGVRLQVSG 189 >gi|120402531|ref|YP_952360.1| hypothetical protein Mvan_1522 [Mycobacterium vanbaalenii PYR-1] gi|119955349|gb|ABM12354.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=235 Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 138/210 (66%), Positives = 151/210 (72%), Gaps = 20/210 (9%) Query 15 AEQLESLRRQMALLSEKV----------------SGGPS----RSGDLVPAGPVSLPPGT 54 AEQ+E LR+Q+A +S KV SG P R L P SLP GT Sbjct 15 AEQVEQLRKQIASVSSKVGAARRMAAPVPEPAAFSGAPDSLLPRPDSLAELLPDSLPRGT 74 Query 55 VGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVE 114 V VLSGARSL L MVA+VTA GG+ AI+GQPD+GLLAAVEMGADLSR+AVIP+PG DPVE Sbjct 75 VAVLSGARSLQLRMVAAVTAEGGHVAIIGQPDVGLLAAVEMGADLSRIAVIPEPGADPVE 134 Query 115 VAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCG 174 VAAVL+DGMDLVVLGLGGR V RARAVVARARQ+GCTLLVT GDWQG S RL ARV G Sbjct 135 VAAVLMDGMDLVVLGLGGRTVPATRARAVVARARQRGCTLLVTGGDWQGASARLDARVSG 194 Query 175 YEITPALRGVPTPGLGRISGVRLQINGRGR 204 YEI GVPTPG GRIS VRL + RGR Sbjct 195 YEIAGGRDGVPTPGCGRISRVRLSMRARGR 224 >gi|108798145|ref|YP_638342.1| hypothetical protein Mmcs_1174 [Mycobacterium sp. MCS] gi|119867241|ref|YP_937193.1| hypothetical protein Mkms_1191 [Mycobacterium sp. KMS] gi|108768564|gb|ABG07286.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119693330|gb|ABL90403.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=232 Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 142/222 (64%), Positives = 156/222 (71%), Gaps = 18/222 (8%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGG---PSRSGDLVPAG----------- 46 MTAA AEQ+E LR+QMA ++ KV G P+ S D PA Sbjct 1 MTAATNLSLTHRTRAEQVEHLRKQMAAVAGKVGSGRRGPTPSADPSPASESLLPLPESLA 60 Query 47 ---PVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLA 103 P SLP GTV VL+GARSL L MVA+ TAAGG+AAIVGQPD GLLAAVEMGADLSRLA Sbjct 61 EQLPRSLPRGTVAVLAGARSLPLGMVAATTAAGGHAAIVGQPDAGLLAAVEMGADLSRLA 120 Query 104 VIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQG 163 VIPDPG DPVEVAAVL+DGMDLVVLGLGGR V RARAV ARARQKGCTLLVT+GDW G Sbjct 121 VIPDPGGDPVEVAAVLMDGMDLVVLGLGGRSVPAGRARAVTARARQKGCTLLVTNGDWPG 180 Query 164 VSTRLAARVCGYEITPA-LRGVPTPGLGRISGVRLQINGRGR 204 + RL ARVCG+E+ A G PTPG GRIS VRL + R R Sbjct 181 ATARLEARVCGFEVAGAGSSGAPTPGCGRISRVRLAMRARSR 222 >gi|126433804|ref|YP_001069495.1| hypothetical protein Mjls_1201 [Mycobacterium sp. JLS] gi|126233604|gb|ABN97004.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=232 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 141/222 (64%), Positives = 155/222 (70%), Gaps = 18/222 (8%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGG---PSRSGDLVPAG----------- 46 MTAA AEQ+E LR+QMA ++ KV G P+ S D PA Sbjct 1 MTAATNLSLTHRTRAEQVEHLRKQMAAVAGKVGSGRRGPTPSADPSPASESLLPLPESLA 60 Query 47 ---PVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLA 103 P SLP GTV VL+GARSL L MVA+ TAAGG+AAIVGQPD GLLAAVEMGADLSRLA Sbjct 61 EQLPRSLPRGTVAVLAGARSLPLGMVAATTAAGGHAAIVGQPDAGLLAAVEMGADLSRLA 120 Query 104 VIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQG 163 VIPDPG DPVEVAAVL+DGMDLVVLGLGGR V RARAV ARARQKGCTLLVT+GDW G Sbjct 121 VIPDPGGDPVEVAAVLMDGMDLVVLGLGGRSVPAGRARAVTARARQKGCTLLVTNGDWPG 180 Query 164 VSTRLAARVCGYEITPA-LRGVPTPGLGRISGVRLQINGRGR 204 + RL ARVCG+E+ A G P PG GRIS VRL + R R Sbjct 181 ATARLEARVCGFEVAGAGSSGAPRPGCGRISRVRLAMRARSR 222 >gi|169630792|ref|YP_001704441.1| hypothetical protein MAB_3713c [Mycobacterium abscessus ATCC 19977] gi|169242759|emb|CAM63787.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=230 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/221 (57%), Positives = 145/221 (66%), Gaps = 23/221 (10%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGP--VSLPPG----- 53 MTA A+D+ L N A+QL+ LR+QMA +S KV G S +G A P SL PG Sbjct 1 MTAVAAADEALVNRADQLQKLRQQMAAISGKVGGDRSAAGHFPEALPDAQSLLPGSDALA 60 Query 54 ----------TVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLA 103 TV V GARSL L +VASVTAAGG AAIVG P++ +LAAVE GADLSRLA Sbjct 61 RSIGHVLRRGTVAVAGGARSLPLEVVASVTAAGGYAAIVGMPEVSVLAAVERGADLSRLA 120 Query 104 VIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQG 163 +IP PG VEVA+VL+DGMDLVVLGLGGR+VT ARA+VARA GCTLL GDW+G Sbjct 121 LIPRPGLSAVEVASVLMDGMDLVVLGLGGRQVTSTSARAIVARAHSNGCTLLAVGGDWEG 180 Query 164 VSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 S RL A++ GY+ GV GLGRI GVR + RGR Sbjct 181 ASVRLQAQITGYD------GVSACGLGRIRGVRTAVRVRGR 215 >gi|333991857|ref|YP_004524471.1| hypothetical protein JDM601_3217 [Mycobacterium sp. JDM601] gi|333487825|gb|AEF37217.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=178 Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 109/156 (70%), Positives = 120/156 (77%), Gaps = 0/156 (0%) Query 47 PVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIP 106 P LP GTV VLSGARSL L MVA+VTAAGGNAAIVGQPD GLLAA EMGADLSRLAVIP Sbjct 13 PAGLPRGTVAVLSGARSLTLGMVAAVTAAGGNAAIVGQPDTGLLAAAEMGADLSRLAVIP 72 Query 107 DPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVST 166 DPG DPVEVA VL+DGMDLVVLGLGGR V AR R V+ARAR +GC LL++ GDWQG + Sbjct 73 DPGNDPVEVATVLMDGMDLVVLGLGGRCVPPARTRVVLARARHRGCALLISGGDWQGAAL 132 Query 167 RLAARVCGYEITPALRGVPTPGLGRISGVRLQINGR 202 RL ARV GYE+ + G GRI VRL++ R Sbjct 133 RLDARVSGYELAGSAGRRARSGFGRIGAVRLEVRAR 168 >gi|343928292|ref|ZP_08767745.1| hypothetical protein GOALK_112_00290 [Gordonia alkanivorans NBRC 16433] gi|343761822|dbj|GAA14671.1| hypothetical protein GOALK_112_00290 [Gordonia alkanivorans NBRC 16433] Length=239 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/164 (54%), Positives = 103/164 (63%), Gaps = 9/164 (5%) Query 50 LPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPG 109 +P GTV GA SLL++M+AS T AGG IVG P + LL+AVEMGADLSR+A IPDPG Sbjct 38 IPRGTVARFDGANSLLIAMIASATRAGGQVGIVGMPRLSLLSAVEMGADLSRIATIPDPG 97 Query 110 TDPVEVAAVLIDGMDLVVLGLGG----RRVTRARARAVVARARQKGCTLLVTDGDWQGVS 165 DPVEVAAVL+DGMDLVVLG G V +RAR V+ R R++ LLV G W G Sbjct 98 LDPVEVAAVLLDGMDLVVLGRVGPGTADAVAPSRARVVMGRVRKQSSVLLVAGGTWPGAQ 157 Query 166 TRLAARVCGYEITPALRGVPT-----PGLGRISGVRLQINGRGR 204 + ARV Y +P L G G GRI G+RLQ+ GR Sbjct 158 LTIEARVLTYRHSPLLSGATDLDSARSGYGRIGGMRLQVTASGR 201 >gi|111023175|ref|YP_706147.1| hypothetical protein RHA1_ro06212 [Rhodococcus jostii RHA1] gi|110822705|gb|ABG97989.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=291 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 94/152 (62%), Positives = 110/152 (73%), Gaps = 2/152 (1%) Query 53 GTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDP 112 G+V +SGA SLLL +VASVTA GG+ A++G P +G+LAAVEMGA L RLA+IPDPG DP Sbjct 98 GSVVSVSGATSLLLGLVASVTAGGGHVAVIGHPRLGVLAAVEMGAQLERLALIPDPGADP 157 Query 113 VEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARV 172 VE+AAVL+DGMDLVVLGLGG V +RARAVVARAR KG TL+VTDG W G RL ARV Sbjct 158 VEIAAVLLDGMDLVVLGLGGASVAPSRARAVVARARSKGSTLVVTDGHWDGAEMRLEARV 217 Query 173 CGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 GY G G GR+ + L + RGR Sbjct 218 HGYAGLG--NGSQDRGCGRLRSLSLAVCARGR 247 >gi|262201691|ref|YP_003272899.1| hypothetical protein Gbro_1746 [Gordonia bronchialis DSM 43247] gi|262085038|gb|ACY21006.1| hypothetical protein Gbro_1746 [Gordonia bronchialis DSM 43247] Length=249 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/202 (49%), Positives = 123/202 (61%), Gaps = 16/202 (7%) Query 18 LESLRRQMALLSEKVSGGP----SRSGDLVPA-GPVS-------LPPGTVGVLSGARSLL 65 L LRRQMA++S + RS D +P P+S L GTV LSG S+L Sbjct 11 LAGLRRQMAVMSGRPDTPAVALADRSSDAIPVPEPLSEMLPHKGLARGTVTRLSGVNSVL 70 Query 66 LSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLIDGMDL 125 ++++A+VT GG IVG P +GLL+A +MGADLSR+A +P PGTDPVEVAAVL+DGMDL Sbjct 71 IAVIATVTQNGGQVGIVGLPRLGLLSAAQMGADLSRIATVPSPGTDPVEVAAVLLDGMDL 130 Query 126 VVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPA---LR 182 VVLG G V +R+R V+ RAR++ LLV G W G T + V Y PA LR Sbjct 131 VVLGTRGVDVAPSRSRVVMGRARKQSSALLVVGGTWPGAQTTIDTEVLTYRHLPAGDDLR 190 Query 183 GVPTPGLGRISGVRLQINGRGR 204 + G GRI G+RL+I GR Sbjct 191 EARS-GFGRIGGMRLRITVSGR 211 >gi|325675547|ref|ZP_08155231.1| hypothetical protein HMPREF0724_13013 [Rhodococcus equi ATCC 33707] gi|325553518|gb|EGD23196.1| hypothetical protein HMPREF0724_13013 [Rhodococcus equi ATCC 33707] Length=283 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 107/204 (53%), Positives = 135/204 (67%), Gaps = 21/204 (10%) Query 16 EQLESLRRQMALLSEKVSGGPSRSG----DLVPA-GPVS-------LPPGTVGVLSGARS 63 ++LE LRR+MA + + R G ++P GP++ L G+V LSGA S Sbjct 52 QRLEYLRRRMAAVPARGEAADGREGAGGERVLPVPGPLAALLPRGGLTRGSVVALSGATS 111 Query 64 LLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLIDGM 123 LLL ++ASVT+ GG+AA++G P +GLLAA EMGA+L RLA +P+PG DPVEVAAVL+DGM Sbjct 112 LLLGLLASVTSDGGHAAVIGFPRLGLLAAAEMGAELRRLAFVPNPGPDPVEVAAVLLDGM 171 Query 124 DLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPALRG 183 DLVVLGLGG V +RARAVVARAR K TL+VT G+W G RL ARV GY+ G Sbjct 172 DLVVLGLGGVSVPPSRARAVVARARSKQSTLIVTGGEWGGAEVRLEARVRGYD------G 225 Query 184 V---PTPGLGRISGVRLQINGRGR 204 V P G GR+ VRL + +GR Sbjct 226 VGCGPEAGRGRLRSVRLAVRAQGR 249 >gi|226365681|ref|YP_002783464.1| hypothetical protein ROP_62720 [Rhodococcus opacus B4] gi|226244171|dbj|BAH54519.1| hypothetical protein [Rhodococcus opacus B4] Length=279 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/152 (62%), Positives = 109/152 (72%), Gaps = 2/152 (1%) Query 53 GTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDP 112 G+V +SGA SLLL +VASVT GG+ A++G P +G+LAAVEMGA L RLA+IPDPG DP Sbjct 86 GSVVSVSGATSLLLGLVASVTGGGGHVAVIGHPRLGVLAAVEMGAQLERLALIPDPGADP 145 Query 113 VEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARV 172 VE+AAVL+DGMDLVVLGLGG V +RARAVVARAR KG TL+VTDG W G RL ARV Sbjct 146 VEIAAVLLDGMDLVVLGLGGASVAPSRARAVVARARSKGSTLVVTDGHWDGAEMRLEARV 205 Query 173 CGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 GY G G GR+ + L + RGR Sbjct 206 HGYAGLG--NGSQDRGCGRLRSLSLAVCARGR 235 >gi|229489337|ref|ZP_04383200.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229323434|gb|EEN89192.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=296 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/169 (58%), Positives = 118/169 (70%), Gaps = 5/169 (2%) Query 36 PSRSGDLVPAGPVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEM 95 P G L+P G L GTV + GA SLLL +VASVTA+GG+ A++GQP +GLLAA EM Sbjct 82 PEGIGALLPQG--GLVRGTVVSVEGAASLLLGLVASVTASGGHVAVIGQPRLGLLAAYEM 139 Query 96 GADLSRLAVIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLL 155 GA L RLA+IP PG DPVE+AAVL+DGMDLV+LGL G V+ +RARAVVARAR KG TL+ Sbjct 140 GAQLERLALIPAPGPDPVEIAAVLLDGMDLVILGLAGASVSPSRARAVVARARSKGSTLV 199 Query 156 VTDGDWQGVSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 VT+G W G RL ARV GY R + G GR+S + L + RGR Sbjct 200 VTEGHWDGAEVRLDARVHGYGGFGQGREL---GRGRLSSLSLAVRARGR 245 >gi|226184558|dbj|BAH32662.1| hypothetical protein RER_19540 [Rhodococcus erythropolis PR4] Length=307 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 97/168 (58%), Positives = 117/168 (70%), Gaps = 9/168 (5%) Query 43 VPAGPVSLPP------GTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMG 96 VP G +L P GTV + GA SLLL +VASVTA+GG+ A++GQP +GLLAA EMG Sbjct 97 VPEGIAALLPQGGLVRGTVVSVEGAASLLLGLVASVTASGGHVAVIGQPRLGLLAAYEMG 156 Query 97 ADLSRLAVIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLV 156 A L RLA+IP PG DPVE+AAVL+DGMDLV+LGL G V+ +RARAVVARAR KG TL+V Sbjct 157 AQLERLALIPAPGPDPVEIAAVLLDGMDLVILGLAGASVSPSRARAVVARARSKGSTLVV 216 Query 157 TDGDWQGVSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 T+G W G RL ARV GY R + G GR+S + L + RGR Sbjct 217 TEGHWDGAEVRLDARVHGYGGFGQGREL---GRGRLSSLSLAVRARGR 261 >gi|312140816|ref|YP_004008152.1| hypothetical protein REQ_34820 [Rhodococcus equi 103S] gi|311890155|emb|CBH49473.1| putative secreted protein [Rhodococcus equi 103S] Length=181 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 92/150 (62%), Positives = 110/150 (74%), Gaps = 9/150 (6%) Query 58 LSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAA 117 LSGA SLLL ++ASVT+ GG+AA++G P +GLLAA EMGA+L RLA +P+PG DPVEVAA Sbjct 4 LSGATSLLLGLLASVTSDGGHAAVIGFPRLGLLAAAEMGAELRRLAFVPNPGPDPVEVAA 63 Query 118 VLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEI 177 VL+DGMDLVVLGLGG V +RARAVVARAR K TL+VT G+W G RL ARV GY+ Sbjct 64 VLLDGMDLVVLGLGGVSVPPSRARAVVARARSKQSTLIVTGGEWGGAEVRLEARVRGYD- 122 Query 178 TPALRGV---PTPGLGRISGVRLQINGRGR 204 GV P G GR+ VRL + +GR Sbjct 123 -----GVGCGPEAGRGRLRSVRLAVRAQGR 147 >gi|77404583|ref|YP_345159.1| hypothetical protein pREC1_0098 [Rhodococcus erythropolis PR4] gi|77019964|dbj|BAE46339.1| hypothetical protein [Rhodococcus erythropolis PR4] Length=271 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/223 (43%), Positives = 128/223 (58%), Gaps = 42/223 (18%) Query 15 AEQLESLRRQMALLSEKVSGG---------------------------------PSRSGD 41 AE+LE LRR+MA + + G P D Sbjct 18 AEKLEQLRRKMASIPARSDGTEPATPSVMLKPVDEREPTPIVATAQSTLRMLPVPPPISD 77 Query 42 LVPAGPVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSR 101 L+P G L GTV +SGA S+L+ ++ASVTA+GG+AA++G P++GLLAA E GADLSR Sbjct 78 LLPRG--GLTRGTVVSVSGANSVLIGLLASVTASGGHAAVIGMPNLGLLAATEQGADLSR 135 Query 102 LAVIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDW 161 +A++P+P VEVAA+L+D +DLV+LGL G VT +RARAVVARAR KG L+VT G W Sbjct 136 IALVPEPRDSAVEVAAILLDAIDLVILGLSGAAVTPSRARAVVARARSKGNVLVVTQGQW 195 Query 162 QGVSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 G R+ + V GY G+ G GR++ V+ + G+ Sbjct 196 DGPDLRIESTVAGYT------GI-GEGRGRVTSVQFDVAAAGK 231 >gi|326381916|ref|ZP_08203609.1| hypothetical protein SCNU_03192 [Gordonia neofelifaecis NRRL B-59395] gi|326199342|gb|EGD56523.1| hypothetical protein SCNU_03192 [Gordonia neofelifaecis NRRL B-59395] Length=221 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/157 (48%), Positives = 97/157 (62%), Gaps = 11/157 (7%) Query 50 LPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPG 109 LP G V +SGA L +S++A + +G A+VG P + L AAVEMGADLSR+AV+ +PG Sbjct 22 LPRGAVAAMSGASVLPMSIIAEASRSGSTVALVGLPRLNLAAAVEMGADLSRIAVVSEPG 81 Query 110 TDPVEVAAVLIDGMDLVVLGLGGR------RVTRARARAVVARARQKGCTLLVTDGDWQG 163 D +EVA VL+DG+DLVVLG R VT ARAR + RAR++ TL+V GDW G Sbjct 82 VDRLEVAGVLLDGIDLVVLGFEDRLGPTGASVTPARARVLGGRARKQSSTLMVL-GDWPG 140 Query 164 VSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQIN 200 +TR+ V Y P R G GRI G R+++ Sbjct 141 TATRVNGEVREYRHLPIRRS----GYGRIGGFRVEVQ 173 >gi|333921670|ref|YP_004495251.1| hypothetical protein AS9A_4017 [Amycolicicoccus subflavus DQS3-9A1] gi|333483891|gb|AEF42451.1| hypothetical protein AS9A_4017 [Amycolicicoccus subflavus DQS3-9A1] Length=255 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 96/226 (43%), Positives = 124/226 (55%), Gaps = 30/226 (13%) Query 1 MTAAFASDQRLENGAEQLESLRRQMALLSEKV-------SGGPSRSGDLVPAGPVSLP-- 51 M+A AS L EQ+E LR ++A + +V S P + PA LP Sbjct 1 MSACSASLATLSR-HEQIEQLRSRIAAVPGRVGSVAPADSPVPRDVSEERPADTEKLPVP 59 Query 52 -------------PGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGAD 98 G++ L+G+R +LL ++ASVTAAGG+ A+VG P++ LLA EMG D Sbjct 60 GPFEAVLPGRRLAKGSILSLTGSRFVLLGLIASVTAAGGHVAVVGMPELSLLAVAEMGGD 119 Query 99 LSRLAVIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTD 158 L R+AVIPDPG DPVEV AVL+DG+DLVVL +GG V RARA+ ARAR K L+ D Sbjct 120 LRRIAVIPDPGPDPVEVVAVLLDGVDLVVLRIGGTHVPYTRARALTARARSKKAVLVAVD 179 Query 159 GDWQGVSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 G W L + V Y RG+ G GRI + L + RGR Sbjct 180 GQWPQPEIVLESHVRAY------RGLGR-GHGRIRSLSLTMQARGR 218 >gi|77454674|ref|YP_345542.1| hypothetical protein pREL1_0107 [Rhodococcus erythropolis PR4] gi|77019674|dbj|BAE46050.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=281 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 89/223 (40%), Positives = 126/223 (57%), Gaps = 42/223 (18%) Query 15 AEQLESLRRQMALLSEKVSGG---------------------------------PSRSGD 41 AE+LE LRR+MA + + G P GD Sbjct 30 AEKLEQLRRKMASIPARADGTEPATPSVMLKPVGEREPTPIVATAQSTLRMLPVPEPIGD 89 Query 42 LVPAGPVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSR 101 L+P G L GTV + GA S+L+ ++A+VTAAGG+ A++G P +GLLA E G DL++ Sbjct 90 LLPRG--GLARGTVVSVDGAASVLIGLLATVTAAGGHVAVIGMPGLGLLAFHEQGGDLAK 147 Query 102 LAVIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDW 161 +A++P P ++ AA+L++G D+VVLGL G VT +R RAV ARAR KG L+VT+G W Sbjct 148 VALVPQPKDAGIDCAAILLEGFDVVVLGLSGGAVTPSRGRAVAARARSKGSLLIVTEGQW 207 Query 162 QGVSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 G R+++RV GY G+ T G GR++GVRL + G+ Sbjct 208 DGPDLRISSRVAGYT------GL-TAGRGRVTGVRLDVAAVGK 243 >gi|229493322|ref|ZP_04387113.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229319824|gb|EEN85654.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=267 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 89/223 (40%), Positives = 126/223 (57%), Gaps = 42/223 (18%) Query 15 AEQLESLRRQMALLSEKVSGG---------------------------------PSRSGD 41 AE+LE LRR+MA + + G P GD Sbjct 16 AEKLEQLRRKMASIPARADGTEPATPSVMLKPVGEREPTPIVATAQSTLRMLPVPEPIGD 75 Query 42 LVPAGPVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSR 101 L+P G L GTV + GA S+L+ ++A+VTAAGG+ A++G P +GLLA E G DL++ Sbjct 76 LLPRG--GLARGTVVSVDGAASVLIGLLATVTAAGGHVAVIGMPGLGLLAFHEQGGDLAK 133 Query 102 LAVIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDW 161 +A++P P ++ AA+L++G D+VVLGL G VT +R RAV ARAR KG L+VT+G W Sbjct 134 VALVPQPKDAGIDCAAILLEGFDVVVLGLSGGAVTPSRGRAVAARARSKGSLLIVTEGQW 193 Query 162 QGVSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 G R+++RV GY G+ T G GR++GVRL + G+ Sbjct 194 DGPDLRISSRVAGYT------GL-TAGRGRVTGVRLDVAAVGK 229 >gi|54022872|ref|YP_117114.1| hypothetical protein nfa9050 [Nocardia farcinica IFM 10152] gi|54014380|dbj|BAD55750.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=253 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 93/176 (53%), Positives = 115/176 (66%), Gaps = 17/176 (9%) Query 16 EQLESLRRQMALLSEKVSGGPSRSGDLVPA---GPVSLPP-------------GTVGVLS 59 ++L LRR+MA + + +RS + P P+ +PP GTV + Sbjct 17 QKLAELRRRMAAIPGRGESAAARS-PVAPRLRREPLPVPPALAGLLPDGGLGKGTVVSYA 75 Query 60 GARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVL 119 GARSLL ++A+VT GG+AA+VG P GLLAA EMGADL RLAVIPDPG DPVEVAAVL Sbjct 76 GARSLLAGLLAAVTEPGGHAAVVGVPGFGLLAAAEMGADLGRLAVIPDPGPDPVEVAAVL 135 Query 120 IDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGY 175 +DG+DLVVLGL G V ARAR + ARAR KG TL+VTDG W + R+ AR+ GY Sbjct 136 LDGLDLVVLGLRGAAVPPARARVIAARARNKGATLVVTDGRWPDATLRMDARIAGY 191 >gi|296138652|ref|YP_003645895.1| hypothetical protein Tpau_0922 [Tsukamurella paurometabola DSM 20162] gi|296026786|gb|ADG77556.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=241 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/163 (48%), Positives = 100/163 (62%), Gaps = 7/163 (4%) Query 42 LVPAGPVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSR 101 L+P G LP GTV ++GA SL +S+VA+VTAAG A+ G G+ AA+E GAD+ R Sbjct 68 LLPGG--GLPRGTVITVTGAASLAVSLVATVTAAGARVALCGVAGFGMAAALEQGADIER 125 Query 102 LAVIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDW 161 +A+I P DPV VA+VL+DG D+V+ GLGG V +R RA+ ARAR KG LLVT G W Sbjct 126 IALIEGPLADPVSVASVLLDGADVVLCGLGGIAVPPSRGRAIAARARTKGAILLVTGGRW 185 Query 162 QGVSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 +G + L ARV GY G I G+ L + RGR Sbjct 186 EGAALHLGARVQGYAGPGGQPGRGR-----IRGIDLAFSARGR 223 >gi|134103092|ref|YP_001108753.1| hypothetical protein SACE_6662 [Saccharopolyspora erythraea NRRL 2338] gi|291003965|ref|ZP_06561938.1| hypothetical protein SeryN2_05547 [Saccharopolyspora erythraea NRRL 2338] gi|133915715|emb|CAM05828.1| hypothetical protein SACE_6662 [Saccharopolyspora erythraea NRRL 2338] Length=319 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/116 (47%), Positives = 77/116 (67%), Gaps = 2/116 (1%) Query 53 GTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDP 112 G+ + G+ SLL +++A T G AA+VG P +GL+AA E G +++RLA++P PG DP Sbjct 55 GSTVAVHGSVSLLFALLAEATDQGSWAAVVGLPGLGLVAAAEAGVEIARLALVPQPGDDP 114 Query 113 VEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRL 168 V V A L+DG+DLVV+G G R+ + AR + RAR +G +LV G+W GV RL Sbjct 115 VGVIAALLDGVDLVVVG-GPHRLLESDARRLSTRARNRGA-VLVPFGEWPGVEVRL 168 >gi|190015945|ref|YP_001965153.1| hypothetical protein PNSL1.050 [Rhodococcus sp. NS1] gi|114796785|gb|ABI79378.1| hypothetical protein PNSL1.050 [Rhodococcus sp. NS1] Length=250 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/152 (49%), Positives = 99/152 (66%), Gaps = 6/152 (3%) Query 53 GTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDP 112 G+ ++GA +L L ++ASVT +GG A ++G P++GLLA VEMGADL+R A++PDPG DP Sbjct 71 GSTVHVTGATALRLGLLASVTGSGGWAGVIGSPNLGLLAGVEMGADLARCALVPDPGADP 130 Query 113 VEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARV 172 + VAAVL+DG+DLVVL LGG + +RARA+ AR R G L+V DG W V L A+V Sbjct 131 LAVAAVLLDGLDLVVLSLGGASIPPSRARAIAARTRNNGAVLVVADGSWPTVDLNLDAQV 190 Query 173 CGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 GY G RI+G+ L + R R Sbjct 191 VGYRGLGGGDGG------RITGLDLTVEARAR 216 >gi|258653324|ref|YP_003202480.1| hypothetical protein Namu_3158 [Nakamurella multipartita DSM 44233] gi|258556549|gb|ACV79491.1| hypothetical protein Namu_3158 [Nakamurella multipartita DSM 44233] Length=213 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/119 (45%), Positives = 73/119 (62%), Gaps = 3/119 (2%) Query 59 SGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAV 118 GA SLL +++A + G AA+VG P +GL AA E+G DL R+ +IPDPG+D ++V ++ Sbjct 34 QGATSLLFTLLAG-SGTGHWAALVGMPGLGLRAAAELGVDLDRVVLIPDPGSDALQVVSI 92 Query 119 LIDGMDLVVLGL-GGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYE 176 LIDG+DL+ + L R AR R + R RQ+G LLV G W G L AR G+ Sbjct 93 LIDGVDLIAVALPPAVRPAPARQRVLGGRLRQRGAVLLVA-GPWPGADLVLTARWTGWH 150 >gi|296120126|ref|ZP_06838680.1| conserved hypothetical protein [Corynebacterium ammoniagenes DSM 20306] gi|295967280|gb|EFG80551.1| conserved hypothetical protein [Corynebacterium ammoniagenes DSM 20306] Length=207 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/169 (35%), Positives = 89/169 (53%), Gaps = 10/169 (5%) Query 36 PSRSGDLVPAGPVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEM 95 PS ++P G LP V LS + +L + +++ +TAAGG+ A+VG ++ LLA V Sbjct 24 PSELSSVLPGG--GLPRRQVMSLSNSPALAVEIISHITAAGGHVAVVGWSEL-LLAQVSE 80 Query 96 GADLSRLAVIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLL 155 DLSR+ IPDPG DP + VL++GMD+V ++ ARAR ++AR R L+ Sbjct 81 KGDLSRVVTIPDPGADPWSITGVLVEGMDVVFHHGPPVELSPARARPILARVRAGQAALV 140 Query 156 VTDGDWQGVSTRLAARVCGYEITPALRGVPTPGLGRISGVRLQINGRGR 204 D G + ++ A V Y G+ G GRI GV + + + Sbjct 141 TVDARLPGTALKMDAHVVHYH------GIGR-GTGRIRGVDIAVRTEAK 182 >gi|332670247|ref|YP_004453255.1| hypothetical protein Celf_1736 [Cellulomonas fimi ATCC 484] gi|332339285|gb|AEE45868.1| hypothetical protein Celf_1736 [Cellulomonas fimi ATCC 484] Length=320 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 58/133 (44%), Positives = 78/133 (59%), Gaps = 5/133 (3%) Query 36 PSRSGDLVPAGPVSLPPGTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEM 95 P+R L+P G L G + G+ SL+L+M+A A G AA+VGQP +GLLAA + Sbjct 116 PARLAPLLPDG---LRRGATTAVVGSTSLVLAMLAHACAGGAWAAVVGQPTVGLLAAAQA 172 Query 96 GADLSRLAVIPDPGTDPVEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLL 155 G L RLAV+P PG D V A L+DG+D+V++G +T R + ARAR +G LL Sbjct 173 GVALDRLAVVPRPGADAATVVAALVDGIDVVLVGPDA-VLTDTDRRRLSARARDRGAVLL 231 Query 156 VTDGDWQGVSTRL 168 T W G +T L Sbjct 232 STV-PWPGAATVL 243 >gi|213964829|ref|ZP_03393028.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] gi|213952365|gb|EEB63748.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] Length=244 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/151 (38%), Positives = 82/151 (55%), Gaps = 9/151 (5%) Query 53 GTVGVLSGARSLLLSMVASVTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDP 112 G V V+ +L ++A VT G + A+VG + GLL+ VE+G LS + +PDPG P Sbjct 73 GAVSVIEQPGVVLAGLIAEVTKTG-HVALVGLAEQGLLSVVELGGKLSNIVCVPDPGMQP 131 Query 113 VEVAAVLIDGMDLVVLGLGGRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARV 172 +EV +L DG+DLVV L R ++AR + AR R GC L+ W G + +++ V Sbjct 132 LEVIGLLADGVDLVVASL-ARTPPPSQARPLQARLRTSGCALVFVGQQWPGDAAEISSSV 190 Query 173 CGYEITPALRGVPTPGLGRISGVRLQINGRG 203 G + G+ T G GRI V Q++ G Sbjct 191 AG------VSGLGT-GYGRIRAVDYQVSVSG 214 >gi|340795238|ref|YP_004760701.1| hypothetical protein CVAR_2281 [Corynebacterium variabile DSM 44702] gi|340535148|gb|AEK37628.1| hypothetical protein CVAR_2281 [Corynebacterium variabile DSM 44702] Length=223 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/193 (37%), Positives = 93/193 (49%), Gaps = 11/193 (5%) Query 12 ENGAEQLESLRRQMALLSEKVSGGPSRSGDLVPAGPVSLPPGTVGVLSGARSLLLSMVAS 71 E+GA Q + + L+ G PS G + G LP G V + + L+ ++A+ Sbjct 13 EHGAPQEPTSTDRPVTLASDALGVPSWLGRHLTRG--GLPRGAVTDAADCPAALVDILAT 70 Query 72 VTAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLIDGMDLVVLGLG 131 VTA+GG AA+VG P + L A G DL R VIPDP V L++G+DL VL Sbjct 71 VTASGGCAAVVGYPQLALAAVEAAGGDLDRTVVIPDPSPHTGAVLGTLVEGLDL-VLHHT 129 Query 132 GRRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPALRGVPTPGLGR 191 + V AR V AR R+ C L+V G W G L RV G +T RG GR Sbjct 130 AKPVAPTAARPVDARLRRSSCALVVV-GGWPGARLHLDWRVDG--VTGLGRGS-----GR 181 Query 192 ISGVRLQINGRGR 204 I GV L G+ Sbjct 182 IRGVTLTGRAHGQ 194 >gi|300789277|ref|YP_003769568.1| hypothetical protein AMED_7452 [Amycolatopsis mediterranei U32] gi|299798791|gb|ADJ49166.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340530922|gb|AEK46127.1| hypothetical protein RAM_38300 [Amycolatopsis mediterranei S699] Length=225 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/132 (41%), Positives = 71/132 (54%), Gaps = 9/132 (6%) Query 73 TAAGGNAAIVGQPDIGLLAAVEMGADLSRLAVIPDPGTDPVEVAAVLIDGMDLVVLGLGG 132 T G AA+ G P +GL AA E+G DL RLA++P+PG + V V + L+DG D+VVLG Sbjct 68 TRTGSWAAVTGLPQLGLAAAAELGVDLERLALVPEPGAELVAVVSALVDGFDVVVLGPA- 126 Query 133 RRVTRARARAVVARARQKGCTLLVTDGDWQGVSTRLAARVCGYEITPALRGVPTPGLGRI 192 RV AR + R R +G T+L+T G W G L RV G G+ G G + Sbjct 127 -RVQPQVARRLAGRVRNRG-TVLLTAGSWPGADLEL--RVSGRR----WHGLTQDGHGHL 178 Query 193 SGVRLQINGRGR 204 ++ RGR Sbjct 179 RARKVVATSRGR 190 Lambda K H 0.318 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 226797436674 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40