BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3404c
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610540|ref|NP_217921.1| hypothetical protein Rv3404c [Mycob... 482 2e-134
gi|120436378|ref|YP_862064.1| hypothetical protein GFO_2032 [Gra... 209 2e-52
gi|302185606|ref|ZP_07262279.1| hypothetical protein Psyrps6_046... 199 3e-49
gi|62258281|gb|AAX77779.1| unknown protein [synthetic construct] 175 5e-42
gi|56708495|ref|YP_170391.1| hypothetical protein FTT_1454c [Fra... 175 5e-42
gi|45434712|gb|AAS60274.1| formyltransferase [Francisella tulare... 175 5e-42
gi|89256000|ref|YP_513362.1| hypothetical protein FTL_0602 [Fran... 174 1e-41
gi|313674705|ref|YP_004052701.1| formyl transferase domain prote... 172 3e-41
gi|336253759|ref|YP_004596866.1| formyl transferase domain-conta... 97.8 1e-18
gi|301061859|ref|ZP_07202590.1| formyl transferase [delta proteo... 97.1 2e-18
gi|334112567|ref|ZP_08486826.1| formyl transferase domain protei... 83.2 3e-14
gi|312879823|ref|ZP_07739623.1| formyl transferase domain protei... 82.4 5e-14
gi|327441111|dbj|BAK17476.1| methionyl-tRNA formyltransferase [S... 79.0 5e-13
gi|302344187|ref|YP_003808716.1| formyl transferase domain prote... 79.0 6e-13
gi|218778486|ref|YP_002429804.1| formyl transferase domain-conta... 78.2 9e-13
gi|258592535|emb|CBE68844.1| Formyl transferase domain protein [... 75.5 5e-12
gi|295425222|ref|ZP_06817925.1| methionyl-tRNA formyltransferase... 75.1 8e-12
gi|300361952|ref|ZP_07058129.1| methionyl-tRNA formyltransferase... 74.7 9e-12
gi|149194661|ref|ZP_01871756.1| formyl transferase domain protei... 74.7 1e-11
gi|238852567|ref|ZP_04642977.1| methionyl-tRNA formyltransferase... 74.3 1e-11
gi|116629418|ref|YP_814590.1| methionyl-tRNA formyltransferase [... 73.9 2e-11
gi|254197711|ref|ZP_04904133.1| putative formyltransferase [Burk... 73.9 2e-11
gi|330816540|ref|YP_004360245.1| putative formyltransferase [Bur... 73.9 2e-11
gi|134277607|ref|ZP_01764322.1| putative formyltransferase [Burk... 73.6 2e-11
gi|126451800|ref|YP_001066280.1| putative formyltransferase [Bur... 73.6 2e-11
gi|76811941|ref|YP_333546.1| nonribosomal peptide synthetase [Bu... 73.6 2e-11
gi|53719336|ref|YP_108322.1| putative formyl transferase [Burkho... 73.6 2e-11
gi|167562690|ref|ZP_02355606.1| putative formyltransferase [Burk... 73.6 3e-11
gi|30250105|ref|NP_842175.1| formyl transferase N-terminus [Nitr... 72.8 4e-11
gi|295100692|emb|CBK98237.1| methionyl-tRNA formyltransferase [F... 72.0 7e-11
gi|186477758|ref|YP_001859228.1| formyl transferase domain-conta... 71.6 9e-11
gi|336053901|ref|YP_004562188.1| methionyl-tRNA formyltransferas... 71.2 1e-10
gi|260664025|ref|ZP_05864878.1| methionyl-tRNA formyltransferase... 71.2 1e-10
gi|238854794|ref|ZP_04645124.1| methionyl-tRNA formyltransferase... 71.2 1e-10
gi|268319211|ref|YP_003292867.1| hypothetical protein FI9785_725... 70.9 2e-10
gi|227890277|ref|ZP_04008082.1| methionyl-tRNA formyltransferase... 70.9 2e-10
gi|329667063|gb|AEB93011.1| methionyl-tRNA formyltransferase [La... 70.5 2e-10
gi|256851319|ref|ZP_05556708.1| methionyl-tRNA formyltransferase... 70.5 2e-10
gi|297206189|ref|ZP_06923584.1| methionyl-tRNA formyltransferase... 70.5 2e-10
gi|42519412|ref|NP_965342.1| methionyl-tRNA formyltransferase [L... 70.5 2e-10
gi|295693193|ref|YP_003601803.1| methionyl-tRNA formyltransferas... 70.5 2e-10
gi|312984156|ref|ZP_07791502.1| methionyl-tRNA formyltransferase... 70.5 2e-10
gi|256849781|ref|ZP_05555212.1| methionyl-tRNA formyltransferase... 70.5 2e-10
gi|256843397|ref|ZP_05548885.1| methionyl-tRNA formyltransferase... 70.5 2e-10
gi|227878883|ref|ZP_03996788.1| methionyl-tRNA formyltransferase... 70.5 2e-10
gi|58337595|ref|YP_194180.1| methionyl-tRNA formyltransferase FM... 70.1 3e-10
gi|297583986|ref|YP_003699766.1| methionyl-tRNA formyltransferas... 70.1 3e-10
gi|338762509|gb|EGP13777.1| methionyl-tRNA formyltransferase [La... 69.7 3e-10
gi|161507729|ref|YP_001577690.1| methionyl-tRNA formyltransferas... 69.7 3e-10
gi|328465623|gb|EGF36846.1| methionyl-tRNA formyltransferase [La... 69.7 4e-10
>gi|15610540|ref|NP_217921.1| hypothetical protein Rv3404c [Mycobacterium tuberculosis H37Rv]
gi|15842999|ref|NP_338036.1| hypothetical protein MT3512 [Mycobacterium tuberculosis CDC1551]
gi|31794585|ref|NP_857078.1| hypothetical protein Mb3438c [Mycobacterium bovis AF2122/97]
81 more sequence titles
Length=234
Score = 482 bits (1240), Expect = 2e-134, Method: Compositional matrix adjust.
Identities = 233/234 (99%), Positives = 234/234 (100%), Gaps = 0/234 (0%)
Query 1 VTILILTDNVHAHALAVDLQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVERYDLVLS 60
+TILILTDNVHAHALAVDLQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVERYDLVLS
Sbjct 1 MTILILTDNVHAHALAVDLQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVERYDLVLS 60
Query 61 FHCKQRFPAALIDGVRCVNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPI 120
FHCKQRFPAALIDGVRCVNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPI
Sbjct 61 FHCKQRFPAALIDGVRCVNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPI 120
Query 121 IAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNLNLKKDFEQ 180
IAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNLNLKKDFEQ
Sbjct 121 IAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNLNLKKDFEQ 180
Query 181 LRRLDLNERGTFGHFLNRLRALTHDDFRNAWFVDASGRKVFVRVVLEPEKPAEA 234
LRRLDLNERGTFGHFLNRLRALTHDDFRNAWFVDASGRKVFVRVVLEPEKPAEA
Sbjct 181 LRRLDLNERGTFGHFLNRLRALTHDDFRNAWFVDASGRKVFVRVVLEPEKPAEA 234
>gi|120436378|ref|YP_862064.1| hypothetical protein GFO_2032 [Gramella forsetii KT0803]
gi|117578528|emb|CAL66997.1| formyltransferase family protein [Gramella forsetii KT0803]
Length=249
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 92/194 (48%), Positives = 140/194 (73%), Gaps = 1/194 (0%)
Query 42 CDVAERVAEIVERYDLVLSFHCKQRFPAALIDGVRCVNVHPGFNPYNRGWFPQVFSIIDG 101
DV ++ I+E + +V+S HC Q FPA L++G+RC+N+HPG+NP NRGW+PQVFSII+
Sbjct 55 LDVNQKTDWILENFHMVVSVHCYQFFPAKLVNGIRCINIHPGYNPVNRGWYPQVFSIIND 114
Query 102 QKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGSY 161
++G TIHE+D++LD+GPII+++ SWD+S ++Y R+++ E EL+ E+FD I DG+Y
Sbjct 115 LQIGATIHEMDEKLDNGPIISRKFVEKFSWDTSLTLYNRVLNAEMELLQENFDKIFDGNY 174
Query 162 TAKSPATEGNLNLKKDFEQLRRLDLNERGTFGHFLNRLRALTHDDFRNAWFVD-ASGRKV 220
K P T GN K+DF++L ++++E T+ + +NRLRALTH ++N ++ D SGRKV
Sbjct 175 LTKKPETGGNFFSKRDFKELLEINMDETDTYRNIINRLRALTHGSYKNMYYTDPESGRKV 234
Query 221 FVRVVLEPEKPAEA 234
+V + L PE E
Sbjct 235 YVNLSLIPEDEKEK 248
>gi|302185606|ref|ZP_07262279.1| hypothetical protein Psyrps6_04653 [Pseudomonas syringae pv.
syringae 642]
Length=254
Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 90/177 (51%), Positives = 123/177 (70%), Gaps = 0/177 (0%)
Query 51 IVERYDLVLSFHCKQRFPAALIDGVRCVNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHE 110
I+E YDLVLS HCKQ FP L++GVRC+N HPGFNP+NRGW+PQ FSI++G G TIH
Sbjct 76 IIEHYDLVLSVHCKQLFPKRLVEGVRCINFHPGFNPFNRGWYPQAFSILNGLPAGATIHV 135
Query 111 IDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEG 170
+D+ +DHG II QR+ + S D+S VY +++++E+ L+ E I G Y P +EG
Sbjct 136 MDEAIDHGHIIVQRQVEVGSGDTSLEVYNKVVEVEKALMHECLADILQGQYEVFKPLSEG 195
Query 171 NLNLKKDFEQLRRLDLNERGTFGHFLNRLRALTHDDFRNAWFVDASGRKVFVRVVLE 227
N N K + +L +LDL E G+ +N LRA +H DF+NA+F+D SG K F++VVLE
Sbjct 196 NYNGIKAYNELCQLDLEETGSLRDHINLLRATSHGDFKNAYFIDESGDKYFIKVVLE 252
>gi|62258281|gb|AAX77779.1| unknown protein [synthetic construct]
Length=276
Score = 175 bits (443), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/201 (42%), Positives = 127/201 (64%), Gaps = 6/201 (2%)
Query 27 DVYQSPIGQLPGVPRCDVAERVAEIVERYDLVLSFHCKQRFPAALIDGVRCVNVHPGFNP 86
++Y S I + D+ + +++ +YDL S H KQ FPA L++ V C+N+HPG NP
Sbjct 70 EIYNSEIKPI------DMKKNGNDLIGKYDLGFSCHSKQLFPAKLVNSVLCINIHPGLNP 123
Query 87 YNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIER 146
YNRGWFPQVFSII+ +G TIH +D+++DHG II Q E + S+++S VYA++ E
Sbjct 124 YNRGWFPQVFSIINKLPIGATIHVMDEEIDHGDIIIQEEVEVNSFENSFDVYAKVQKKEV 183
Query 147 ELVLEHFDAIRDGSYTAKSPATEGNLNLKKDFEQLRRLDLNERGTFGHFLNRLRALTHDD 206
EL + D I + +T P +EGN N D++ + +DL++ T ++ LRA+TH
Sbjct 184 ELFTKVIDDILNNKFTRIKPNSEGNYNSIHDYKNMCEIDLDKIVTMREAIDYLRAMTHPP 243
Query 207 FRNAWFVDASGRKVFVRVVLE 227
++N++F+D G KVFV + LE
Sbjct 244 YKNSYFIDEHGNKVFVALELE 264
>gi|56708495|ref|YP_170391.1| hypothetical protein FTT_1454c [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670966|ref|YP_667523.1| hypothetical protein FTF1454c [Francisella tularensis subsp.
tularensis FSC198]
gi|134301502|ref|YP_001121470.1| hypothetical protein FTW_0421 [Francisella tularensis subsp.
tularensis WY96-3418]
8 more sequence titles
Length=241
Score = 175 bits (443), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/201 (42%), Positives = 127/201 (64%), Gaps = 6/201 (2%)
Query 27 DVYQSPIGQLPGVPRCDVAERVAEIVERYDLVLSFHCKQRFPAALIDGVRCVNVHPGFNP 86
++Y S I + D+ + +++ +YDL S H KQ FPA L++ V C+N+HPG NP
Sbjct 44 EIYNSEIKPI------DMKKNGNDLIGKYDLGFSCHSKQLFPAKLVNSVLCINIHPGLNP 97
Query 87 YNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIER 146
YNRGWFPQVFSII+ +G TIH +D+++DHG II Q E + S+++S VYA++ E
Sbjct 98 YNRGWFPQVFSIINKLPIGATIHVMDEEIDHGDIIIQEEVEVNSFENSFDVYAKVQKKEV 157
Query 147 ELVLEHFDAIRDGSYTAKSPATEGNLNLKKDFEQLRRLDLNERGTFGHFLNRLRALTHDD 206
EL + D I + +T P +EGN N D++ + +DL++ T ++ LRA+TH
Sbjct 158 ELFTKVIDDILNNKFTRIKPNSEGNYNSIHDYKNMCEIDLDKIVTMREAIDYLRAMTHPP 217
Query 207 FRNAWFVDASGRKVFVRVVLE 227
++N++F+D G KVFV + LE
Sbjct 218 YKNSYFIDEHGNKVFVALELE 238
>gi|45434712|gb|AAS60274.1| formyltransferase [Francisella tularensis subsp. tularensis]
Length=241
Score = 175 bits (443), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/201 (42%), Positives = 127/201 (64%), Gaps = 6/201 (2%)
Query 27 DVYQSPIGQLPGVPRCDVAERVAEIVERYDLVLSFHCKQRFPAALIDGVRCVNVHPGFNP 86
++Y S I + D+ + +++ +YDL S H KQ FPA L++ V C+N+HPG NP
Sbjct 44 EIYNSEIKPI------DMKKNGNDLIGKYDLGFSCHSKQLFPAKLVNSVLCINIHPGLNP 97
Query 87 YNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIER 146
YNRGWFPQVFSII+ +G TIH +D+++DHG II Q E + S+++S VYA++ E
Sbjct 98 YNRGWFPQVFSIINKLPIGATIHVMDEEIDHGDIIIQEEVEVNSFENSFDVYAKVQKKEV 157
Query 147 ELVLEHFDAIRDGSYTAKSPATEGNLNLKKDFEQLRRLDLNERGTFGHFLNRLRALTHDD 206
EL + D I + +T P +EGN N D++ + +DL++ T ++ LRA+TH
Sbjct 158 ELFTKVIDDILNNKFTRIKPNSEGNYNSIHDYKNMCEIDLDKIVTMREAIDYLRAMTHPP 217
Query 207 FRNAWFVDASGRKVFVRVVLE 227
++N++F+D G KVFV + LE
Sbjct 218 YKNSYFIDEHGNKVFVALELE 238
>gi|89256000|ref|YP_513362.1| hypothetical protein FTL_0602 [Francisella tularensis subsp.
holarctica LVS]
gi|115314480|ref|YP_763203.1| hypothetical protein FTH_0602 [Francisella tularensis subsp.
holarctica OSU18]
gi|156502003|ref|YP_001428068.1| hypothetical protein FTA_0636 [Francisella tularensis subsp.
holarctica FTNF002-00]
9 more sequence titles
Length=241
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/201 (41%), Positives = 126/201 (63%), Gaps = 6/201 (2%)
Query 27 DVYQSPIGQLPGVPRCDVAERVAEIVERYDLVLSFHCKQRFPAALIDGVRCVNVHPGFNP 86
++Y S I + D+ + +++ +YDL S H KQ FP L++ V C+N+HPG NP
Sbjct 44 EIYNSEIKPI------DMKKNGNDLIGKYDLGFSCHSKQLFPTKLVNSVLCINIHPGLNP 97
Query 87 YNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIER 146
YNRGWFPQVFSII+ +G TIH +D+++DHG II Q E + S+++S VYA++ E
Sbjct 98 YNRGWFPQVFSIINKLPIGATIHVMDEEIDHGDIIIQEEVEVNSFENSFDVYAKVQKKEV 157
Query 147 ELVLEHFDAIRDGSYTAKSPATEGNLNLKKDFEQLRRLDLNERGTFGHFLNRLRALTHDD 206
EL + D I + +T P +EGN N D++ + +DL++ T ++ LRA+TH
Sbjct 158 ELFTKVIDDILNNKFTRIKPNSEGNYNSIHDYKNMCEIDLDKIVTMREAIDYLRAMTHPP 217
Query 207 FRNAWFVDASGRKVFVRVVLE 227
++N++F+D G KVFV + LE
Sbjct 218 YKNSYFIDEHGNKVFVALELE 238
>gi|313674705|ref|YP_004052701.1| formyl transferase domain protein [Marivirga tractuosa DSM 4126]
gi|312941403|gb|ADR20593.1| formyl transferase domain protein [Marivirga tractuosa DSM 4126]
Length=242
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/180 (43%), Positives = 121/180 (68%), Gaps = 1/180 (0%)
Query 51 IVERYDLVLSFHCKQRFPAALIDGVRCVNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHE 110
++ Y+L++S HCKQ FP L++ +RC+N+HPG+NP NRGW+PQVF+I++ +G TIHE
Sbjct 61 LINNYNLIISGHCKQFFPKKLVNQIRCINIHPGYNPINRGWYPQVFAIVNDLPIGATIHE 120
Query 111 IDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEG 170
+D++LDHGPII + D+S +Y R+++ E +L E+F I +Y + A E
Sbjct 121 MDEKLDHGPIITRAMIEKHEEDTSLEIYTRVINEELKLFKENFKEIISNTYKTITIAGEN 180
Query 171 NLNL-KKDFEQLRRLDLNERGTFGHFLNRLRALTHDDFRNAWFVDASGRKVFVRVVLEPE 229
+ K+DF+ L +DL+++ +F L+ LRA+TH D++NA+F+D G KVFV + L E
Sbjct 181 SHFFDKEDFKNLSEIDLDKKVSFREALDFLRAMTHGDYKNAYFIDKKGDKVFVSIKLNKE 240
>gi|336253759|ref|YP_004596866.1| formyl transferase domain-containing protein [Halopiger xanaduensis
SH-6]
gi|335337748|gb|AEH36987.1| formyl transferase domain protein [Halopiger xanaduensis SH-6]
Length=225
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/174 (35%), Positives = 93/174 (54%), Gaps = 4/174 (2%)
Query 54 RYDLVLSFHCKQRFPAALID--GVRCVNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEI 111
R D ++S ++ P ++++ CVN+HP + PYNRG P V+SI+D GVT+H +
Sbjct 48 RPDFLVSCGYRRLVPESILEIPTEGCVNLHPAYLPYNRGANPNVWSIVDNTPAGVTLHYM 107
Query 112 DDQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGS-YTAKSPATEG 170
D LD G IIA+R + D+ +Y RL D + +L + + I G T + G
Sbjct 108 DSSLDTGDIIARRTVPTDFEDTGKDLYRRLEDAQVDLFRDAWPDIEAGDPSTITQDSDAG 167
Query 171 NLNLKKDFEQLRRLDLNERGTFGHFLNRLRALTHDDFRNAWFVDASGRKVFVRV 224
+ DF++L RLD +E FL+RLRALT + NA ++ G +V +
Sbjct 168 TYHETTDFKELCRLDPDETVRVKEFLDRLRALTFPPYDNAE-IEVDGETYYVDI 220
>gi|301061859|ref|ZP_07202590.1| formyl transferase [delta proteobacterium NaphS2]
gi|300444074|gb|EFK08108.1| formyl transferase [delta proteobacterium NaphS2]
Length=242
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/177 (30%), Positives = 97/177 (55%), Gaps = 5/177 (2%)
Query 56 DLVLSFHCKQRFPAALIDGVR--CVNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDD 113
DL+L H P ++ R +N+HP + PYNRGW ++I+D +G T+H +D
Sbjct 61 DLILGIHFPYIMPKEVLAVPRIGVLNLHPAYLPYNRGWHTPSWAILDRNPIGATLHFMDS 120
Query 114 QLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGSYT-AKSPATEGNL 172
+D G I+ Q++ A+ D++ ++Y RL +E E+ +E +D I+ S+ EG L
Sbjct 121 GIDTGDIVHQKKLAVSPGDTANTLYRRLKSLEFEVFVEAWDQIKTLSFQRLPQRIDEGTL 180
Query 173 NLKKDF--EQLRRLDLNERGTFGHFLNRLRALTHDDFRNAWFVDASGRKVFVRVVLE 227
+ + + +++++DL E G L +LRALT D A + + + +K +++ ++
Sbjct 181 HRRDELFRPEIQKIDLEENVNAGRLLQKLRALTTDRLNEAAYYEVNRKKYRIQLTIQ 237
>gi|334112567|ref|ZP_08486826.1| formyl transferase domain protein [Methylomicrobium album BG8]
gi|333597321|gb|EGL02158.1| formyl transferase domain protein [Methylomicrobium album BG8]
Length=269
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/154 (33%), Positives = 81/154 (53%), Gaps = 7/154 (4%)
Query 78 VNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSV 137
+NVHPG+ PYN+G+F V+S++DG GV++H ++ D G + AQ + D+ ++
Sbjct 106 INVHPGYLPYNKGFFYYVWSVLDGTPAGVSVHRMNSAADAGDLYAQALVEVTPEDTGDTL 165
Query 138 YARLMDIERELVLEHFDAIRDGSYTA---KSPATEGNLNLKKDFEQLRRLDLNERGTFGH 194
Y + D +L + +I DG+Y + + P T LN + +L RLD +ER
Sbjct 166 YRKHEDAAIQLFRATWPSIVDGTYRSHPQRHPGTRHKLN---EMSELLRLDPDERLRTRD 222
Query 195 FLNRLRALTHDDFRNAWFVDASGRKVFVRVVLEP 228
++RLR T R+ VD G V + L+P
Sbjct 223 LIDRLRVCTVPG-RSGCIVDIDGESFQVELQLKP 255
>gi|312879823|ref|ZP_07739623.1| formyl transferase domain protein [Aminomonas paucivorans DSM
12260]
gi|310783114|gb|EFQ23512.1| formyl transferase domain protein [Aminomonas paucivorans DSM
12260]
Length=261
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/158 (30%), Positives = 84/158 (54%), Gaps = 4/158 (2%)
Query 78 VNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSV 137
+N+H PYNRG P V+SI +G GVT+H + + +D G I +Q + ++ D+ S+
Sbjct 106 LNLHTSLLPYNRGANPNVWSIYEGTPAGVTLHRMTESIDDGEIYSQIDVPVDQCDTGKSL 165
Query 138 YARLMDIERELVLEHFDAIRDGSYT--AKSPATEGNLNLKKDFEQLRRLDLNERGTFGHF 195
Y +L + + L+ + I G + G + ++DF + +D + G F
Sbjct 166 YEKLGNACKILIDGEMENILLGKLKPLVSMDNSLGTYHSREDFRNMLEIDTKKTVVVGDF 225
Query 196 LNRLRALTHDDFRNAWFVDASGRKVFVRVVLEPEKPAE 233
+ +LRA T ++N +F + +GR+ +V VV+ E+P E
Sbjct 226 IKKLRAFTFPPYKNLYFQE-NGRRYYVEVVIS-EEPKE 261
>gi|327441111|dbj|BAK17476.1| methionyl-tRNA formyltransferase [Solibacillus silvestris StLB046]
Length=313
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/132 (37%), Positives = 75/132 (57%), Gaps = 4/132 (3%)
Query 56 DLVLSFHCKQRFPAALIDGVR--CVNVHPGFNPYNRGWFPQVFSIIDGQ-KVGVTIHEID 112
D+V++ Q P L++ R C+NVH P RG P +IIDGQ GVTI +
Sbjct 81 DIVVTAAFGQILPKELLEAPRLGCINVHASLLPAYRGGAPIHQAIIDGQASTGVTIMYMA 140
Query 113 DQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNL 172
++LD G II+QRE AIE D++G+++ +L + REL+ E +I DG+ A+ P E +
Sbjct 141 EKLDAGDIISQREIAIEDTDNTGTMFDKLSAVGRELLKETMPSIIDGT-NARIPQDESLV 199
Query 173 NLKKDFEQLRRL 184
++ + + L
Sbjct 200 TFARNISREQEL 211
>gi|302344187|ref|YP_003808716.1| formyl transferase domain protein [Desulfarculus baarsii DSM
2075]
gi|301640800|gb|ADK86122.1| formyl transferase domain protein [Desulfarculus baarsii DSM
2075]
Length=259
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/159 (34%), Positives = 89/159 (56%), Gaps = 5/159 (3%)
Query 77 CVNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGS 136
VN+HP + P+NRG + V+SI++ GVTIH ID LD G IIA+R+ +E D+ S
Sbjct 98 SVNIHPAYLPHNRGVYANVWSIVERTPAGVTIHYIDRGLDTGDIIARRQVDVEPIDTGKS 157
Query 137 VYARLMDIERELVLEHFDAIRDGSYTAKSP--ATEGNLNLKKDFEQLRRLDLNERGTFGH 194
+Y +L L+ E + I G + P ++G+ + +D +++ +DL++
Sbjct 158 LYHKLELAALALLAETWPLIAAGQ-APRLPQDKSQGSCHRARDVKKIDHIDLDKSYNARE 216
Query 195 FLNRLRALTHDDFRNAWFVDASGRKVFVRVVLEPEKPAE 233
++ LRA T A+FV+ +GR+V+V + L +P E
Sbjct 217 LIDILRARTFPPHAGAYFVE-NGRRVYVSLQLS-HQPGE 253
>gi|218778486|ref|YP_002429804.1| formyl transferase domain-containing protein [Desulfatibacillum
alkenivorans AK-01]
gi|218759870|gb|ACL02336.1| formyl transferase domain protein [Desulfatibacillum alkenivorans
AK-01]
Length=257
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/151 (33%), Positives = 77/151 (51%), Gaps = 2/151 (1%)
Query 77 CVNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGS 136
C+NVHP P+NRG P V++I++G GVT+H ID+ +D G IIAQR + D+ +
Sbjct 98 CINVHPALLPFNRGAHPNVWNIVEGSPAGVTVHYIDEGVDTGRIIAQRFVEVRPIDTGKT 157
Query 137 VYARLMDIERELVLEHFDAIRDGSYTAKS-PATEGNLNLKKDFEQLRRLDLNERGTFGHF 195
+Y RL +L E + G A G + D + ++ + N+ T
Sbjct 158 LYRRLEKACLDLFEETWPKFLAGDMEIDHVVAGSGTFHKVADLKTIQEIKPNKLYTAREL 217
Query 196 LNRLRALTHDDFRNAWFVDASGRKVFVRVVL 226
++ +RA T + A V G+KVF+R+ L
Sbjct 218 VDVIRARTFEPHPGAHMV-VDGKKVFMRLEL 247
>gi|258592535|emb|CBE68844.1| Formyl transferase domain protein [NC10 bacterium 'Dutch sediment']
Length=197
Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/149 (33%), Positives = 77/149 (52%), Gaps = 3/149 (2%)
Query 39 VPRCDVAERVAEIV-ERYDLVLSFHCKQRFPAALIDGV--RCVNVHPGFNPYNRGWFPQV 95
V R D A +V +YD ++S+ + + + + VN+H + P+NRG P +
Sbjct 24 VTRTDAPLLAASLVANKYDFLVSYGYRHLIRQDWLWAMPSQIVNLHISYLPWNRGSDPNL 83
Query 96 FSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDA 155
+S +D GV+IH +D LD GP++A+R+ E D+ S YARL +L E + A
Sbjct 84 WSFVDDTPKGVSIHFVDGGLDTGPLVARRKVFPEPGDTLASSYARLSAAVEDLFRESWPA 143
Query 156 IRDGSYTAKSPATEGNLNLKKDFEQLRRL 184
IR GS T G+ + KD E++ L
Sbjct 144 IRAGSVTPVPQPPGGSCHRLKDRERVAHL 172
>gi|295425222|ref|ZP_06817925.1| methionyl-tRNA formyltransferase [Lactobacillus amylolyticus
DSM 11664]
gi|295064998|gb|EFG55903.1| methionyl-tRNA formyltransferase [Lactobacillus amylolyticus
DSM 11664]
Length=316
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/195 (31%), Positives = 100/195 (52%), Gaps = 22/195 (11%)
Query 19 LQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVERY-DLVLSFHCKQRFPAALIDGVR- 76
+ A D+ VYQ PI +L G P +AE+++ + D +++ Q P ++ V+
Sbjct 53 IAAEAHDIPVYQ-PI-KLSGSPE------MAELIDMHADFIVTAAYGQFLPTKFLNSVKI 104
Query 77 -CVNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEIDDQLDHGPIIAQRECAIESWDSS 134
VNVH P RG P +++++G K G+TI E+ ++D G I AQ+ IE D++
Sbjct 105 AAVNVHGSLLPKYRGGAPIQYALLNGDKETGITIMEMVKKMDAGDIYAQKALKIEPDDNA 164
Query 135 GSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNL----NLKKDFEQLRRLDLNERG 190
G+V+ +L + R+L+LE I DG+ K+P + N+KK+ E+ +
Sbjct 165 GTVFEKLSYLGRDLLLETLPKIADGT-VVKTPQDPEKVVFSPNIKKEQEK-----ITTEM 218
Query 191 TFGHFLNRLRALTHD 205
T N +RAL D
Sbjct 219 TASEANNLIRALNPD 233
>gi|300361952|ref|ZP_07058129.1| methionyl-tRNA formyltransferase [Lactobacillus gasseri JV-V03]
gi|300354571|gb|EFJ70442.1| methionyl-tRNA formyltransferase [Lactobacillus gasseri JV-V03]
Length=314
Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/201 (29%), Positives = 101/201 (51%), Gaps = 22/201 (10%)
Query 13 HALAVDLQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVE-RYDLVLSFHCKQRFPAAL 71
H AV A ++ VYQ +L G ++ +AE+++ D +++ Q P
Sbjct 45 HQSAVKQTALKHNLPVYQP--AKLSG------SDELAELMKIEPDFIVTAAYGQFLPTKF 96
Query 72 IDGVRC--VNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEIDDQLDHGPIIAQRECAI 128
+ + VNVH P RG P +S+++G K G+TI E+ ++D G I +Q+ I
Sbjct 97 LKSAKIAPVNVHGSLLPKYRGGAPIQYSVLNGDKETGITIMEMVKKMDAGDIFSQKALPI 156
Query 129 ESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNL----NLKKDFEQLRRL 184
E+ D+SG+++ +L + R+L+LE DG+ T ++P E + N+ K+ EQ++
Sbjct 157 EADDTSGTLFDKLSILGRDLLLETLPKFIDGTIT-RTPQNEAKVVFSPNISKEQEQIKLS 215
Query 185 DLNERGTFGHFLNRLRALTHD 205
E+ N +RAL D
Sbjct 216 MTAEQAN-----NLIRALNPD 231
>gi|149194661|ref|ZP_01871756.1| formyl transferase domain protein [Caminibacter mediatlanticus
TB-2]
gi|149135084|gb|EDM23565.1| formyl transferase domain protein [Caminibacter mediatlanticus
TB-2]
Length=195
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/178 (24%), Positives = 86/178 (49%), Gaps = 12/178 (6%)
Query 1 VTILILTDNVHAHALAVDLQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVERYDLVLS 60
+ IL LT+N + L + L+ +H + + P+ + + +++ D+++S
Sbjct 3 LKILFLTNNQITNPLCLWLRKKHYKVYKFTKPLNK-------TILQKINP-----DIIIS 50
Query 61 FHCKQRFPAALIDGVRCVNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPI 120
++ K + +N+H + P+NRG P ++S I+ K GVTIH ID+ +D G I
Sbjct 51 YNYKYIIKKEFLTEYYFINLHISYLPFNRGAHPNIWSFIENTKKGVTIHLIDEGIDTGDI 110
Query 121 IAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNLNLKKDF 178
+ Q+ ++ ++ S Y +L + L ++F I + K +G ++ K+
Sbjct 111 LVQKRVVLDKKETFKSTYKKLHFHIQMLFKQNFKKIINQKIKPKQQPKQGTFHISKEL 168
>gi|238852567|ref|ZP_04642977.1| methionyl-tRNA formyltransferase [Lactobacillus gasseri 202-4]
gi|238834713|gb|EEQ26940.1| methionyl-tRNA formyltransferase [Lactobacillus gasseri 202-4]
Length=314
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/201 (30%), Positives = 100/201 (50%), Gaps = 22/201 (10%)
Query 13 HALAVDLQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVE-RYDLVLSFHCKQRFPAAL 71
H AV A ++ VYQ +L G ++ +AE+++ D +++ Q P
Sbjct 45 HQSAVKQTALKHNLPVYQP--AKLSG------SDELAELMKIEPDFIVTAAYGQFLPTKF 96
Query 72 IDGVRC--VNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEIDDQLDHGPIIAQRECAI 128
+ + VNVH P RG P +S+++G K GVTI E+ ++D G I +Q+ I
Sbjct 97 LKSAKIAPVNVHGSLLPKYRGGAPIQYSVLNGDKETGVTIMEMVKKMDAGDIFSQKALPI 156
Query 129 ESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNL----NLKKDFEQLRRL 184
E D+SG+++ +L + R+L+LE DG+ T ++P E + N+ K+ EQ++
Sbjct 157 EDDDTSGTLFDKLSILGRDLLLETLPKFIDGTVT-RTPQNEDKVVFSPNISKEQEQIKLT 215
Query 185 DLNERGTFGHFLNRLRALTHD 205
E+ N +RAL D
Sbjct 216 MTAEQAN-----NLIRALNPD 231
>gi|116629418|ref|YP_814590.1| methionyl-tRNA formyltransferase [Lactobacillus gasseri ATCC
33323]
gi|282850878|ref|ZP_06260252.1| methionyl-tRNA formyltransferase [Lactobacillus gasseri 224-1]
gi|122273644|sp|Q044H0.1|FMT_LACGA RecName: Full=Methionyl-tRNA formyltransferase
gi|116095000|gb|ABJ60152.1| methionyl-tRNA formyltransferase [Lactobacillus gasseri ATCC
33323]
gi|282557830|gb|EFB63418.1| methionyl-tRNA formyltransferase [Lactobacillus gasseri 224-1]
Length=314
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/201 (30%), Positives = 100/201 (50%), Gaps = 22/201 (10%)
Query 13 HALAVDLQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVE-RYDLVLSFHCKQRFPAAL 71
H AV A ++ VYQ +L G ++ +AE+++ D +++ Q P
Sbjct 45 HQSAVKQTALKHNLPVYQP--AKLSG------SDELAELMKIEPDFIVTAAYGQFLPTKF 96
Query 72 IDGVRC--VNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEIDDQLDHGPIIAQRECAI 128
+ + VNVH P RG P +S+++G K GVTI E+ ++D G I +Q+ I
Sbjct 97 LKSAKIAPVNVHGSLLPKYRGGAPIQYSVLNGDKETGVTIMEMVKKMDAGDIFSQKALPI 156
Query 129 ESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNL----NLKKDFEQLRRL 184
E D+SG+++ +L + R+L+LE DG+ T ++P E + N+ K+ EQ++
Sbjct 157 EDDDTSGTLFDKLSILGRDLLLETLPKFIDGTVT-RTPQNEDKVVFSPNISKEQEQIKLT 215
Query 185 DLNERGTFGHFLNRLRALTHD 205
E+ N +RAL D
Sbjct 216 MTAEQAN-----NLIRALNPD 231
>gi|254197711|ref|ZP_04904133.1| putative formyltransferase [Burkholderia pseudomallei S13]
gi|169654452|gb|EDS87145.1| putative formyltransferase [Burkholderia pseudomallei S13]
Length=272
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/88 (37%), Positives = 53/88 (61%), Gaps = 0/88 (0%)
Query 74 GVRCVNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDS 133
G +N+HPG+ PYN+G++ ++++DG GV+IH I +D GPII+Q+ I+ D+
Sbjct 101 GKDSINLHPGYLPYNKGFYYYAWAVLDGTPAGVSIHRIVSAVDAGPIISQKRVLIDGTDT 160
Query 134 SGSVYARLMDIERELVLEHFDAIRDGSY 161
+Y + MD EL + +I G+Y
Sbjct 161 GDVIYDKHMDASVELFRTTWPSIESGTY 188
>gi|330816540|ref|YP_004360245.1| putative formyltransferase [Burkholderia gladioli BSR3]
gi|327368933|gb|AEA60289.1| putative formyltransferase [Burkholderia gladioli BSR3]
Length=272
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/84 (37%), Positives = 52/84 (62%), Gaps = 0/84 (0%)
Query 78 VNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSV 137
+N+HPG+ PYN+G++ ++++DG GV+IH I+ +D GPII+Q +E D+ +
Sbjct 105 INLHPGYLPYNKGFYYYAWAVLDGTPAGVSIHRIETAVDAGPIISQMRVRVEGTDTGDII 164
Query 138 YARLMDIERELVLEHFDAIRDGSY 161
Y + MD EL + +I G+Y
Sbjct 165 YDKHMDASIELFRTTWPSIETGTY 188
>gi|134277607|ref|ZP_01764322.1| putative formyltransferase [Burkholderia pseudomallei 305]
gi|134251257|gb|EBA51336.1| putative formyltransferase [Burkholderia pseudomallei 305]
Length=272
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/84 (37%), Positives = 52/84 (62%), Gaps = 0/84 (0%)
Query 78 VNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSV 137
+N+HPG+ PYN+G++ ++++DG GV+IH I +D GPII+Q+ I+ D+ +
Sbjct 105 INLHPGYLPYNKGFYYYAWAVLDGTPAGVSIHRIVSAVDAGPIISQKRVLIDGTDTGDVI 164
Query 138 YARLMDIERELVLEHFDAIRDGSY 161
Y + MD EL + +I G+Y
Sbjct 165 YDKHMDASVELFRTTWPSIESGTY 188
>gi|126451800|ref|YP_001066280.1| putative formyltransferase [Burkholderia pseudomallei 1106a]
gi|167719549|ref|ZP_02402785.1| putative formyltransferase [Burkholderia pseudomallei DM98]
gi|167738527|ref|ZP_02411301.1| putative formyltransferase [Burkholderia pseudomallei 14]
17 more sequence titles
Length=272
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/84 (37%), Positives = 52/84 (62%), Gaps = 0/84 (0%)
Query 78 VNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSV 137
+N+HPG+ PYN+G++ ++++DG GV+IH I +D GPII+Q+ I+ D+ +
Sbjct 105 INLHPGYLPYNKGFYYYAWAVLDGTPAGVSIHRIVSAVDAGPIISQKRVLIDGTDTGDVI 164
Query 138 YARLMDIERELVLEHFDAIRDGSY 161
Y + MD EL + +I G+Y
Sbjct 165 YDKHMDASVELFRTTWPSIESGTY 188
>gi|76811941|ref|YP_333546.1| nonribosomal peptide synthetase [Burkholderia pseudomallei 1710b]
gi|76581394|gb|ABA50869.1| nonribosomal peptide synthetase [Burkholderia pseudomallei 1710b]
Length=269
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/84 (37%), Positives = 52/84 (62%), Gaps = 0/84 (0%)
Query 78 VNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSV 137
+N+HPG+ PYN+G++ ++++DG GV+IH I +D GPII+Q+ I+ D+ +
Sbjct 102 INLHPGYLPYNKGFYYYAWAVLDGTPAGVSIHRIVSAVDAGPIISQKRVLIDGTDTGDVI 161
Query 138 YARLMDIERELVLEHFDAIRDGSY 161
Y + MD EL + +I G+Y
Sbjct 162 YDKHMDASVELFRTTWPSIESGTY 185
>gi|53719336|ref|YP_108322.1| putative formyl transferase [Burkholderia pseudomallei K96243]
gi|126441448|ref|YP_001059030.1| putative formyltransferase [Burkholderia pseudomallei 668]
gi|167815749|ref|ZP_02447429.1| putative formyltransferase [Burkholderia pseudomallei 91]
6 more sequence titles
Length=272
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/84 (37%), Positives = 52/84 (62%), Gaps = 0/84 (0%)
Query 78 VNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSV 137
+N+HPG+ PYN+G++ ++++DG GV+IH I +D GPII+Q+ I+ D+ +
Sbjct 105 INLHPGYLPYNKGFYYYAWAVLDGTPAGVSIHRIVSAVDAGPIISQKRVLIDGTDTGDVI 164
Query 138 YARLMDIERELVLEHFDAIRDGSY 161
Y + MD EL + +I G+Y
Sbjct 165 YDKHMDASVELFRTTWPSIESGTY 188
>gi|167562690|ref|ZP_02355606.1| putative formyltransferase [Burkholderia oklahomensis EO147]
gi|167569873|ref|ZP_02362747.1| putative formyltransferase [Burkholderia oklahomensis C6786]
Length=272
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/84 (37%), Positives = 52/84 (62%), Gaps = 0/84 (0%)
Query 78 VNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSV 137
+N+HPG+ PYN+G++ ++++DG GV+IH I +D GPII+Q+ I+ D+ +
Sbjct 105 INLHPGYLPYNKGFYYYAWAVLDGTPAGVSIHRIVSAVDAGPIISQKRVLIDGTDTGDVI 164
Query 138 YARLMDIERELVLEHFDAIRDGSY 161
Y + MD EL + +I G+Y
Sbjct 165 YDKHMDASVELFRTTWPSIESGTY 188
>gi|30250105|ref|NP_842175.1| formyl transferase N-terminus [Nitrosomonas europaea ATCC 19718]
gi|30139212|emb|CAD86082.1| Formyl transferase N-terminus [Nitrosomonas europaea ATCC 19718]
Length=261
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/198 (30%), Positives = 98/198 (50%), Gaps = 19/198 (9%)
Query 48 VAEIVERYDLVLSFHCKQRFPAALIDGVR--CVNVHPGFNPYNRGWFPQVFSIIDGQK-V 104
V ++ + D L K P LI + +N+H P RG +P ++II+G++
Sbjct 68 VDRLIRQADWFLLLSWKHIIPIDLISLPKQGVLNLHYSLLPSYRGVYPVNWAIINGERRT 127
Query 105 GVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAI--RDGSY- 161
G T H +++++D G I Q E + D++ ++ +RL DI V HFD + R +Y
Sbjct 128 GFTYHFVNEEIDDGEIFMQVEVPVHLSDTARTLQSRLDDI----VCHHFDELIERLLTYD 183
Query 162 -------TAKSPATEGNLNLKKDFEQLRRLDLNERGTFGHFLNRLRALT-HDDFRNAWFV 213
T K G+ ++ FE+ +DLN+ F N LR L +D +NA+ +
Sbjct 184 LGSRLRDTQKKKGARGDYYSREKFEKTCLIDLNKSYQGVEFFNLLRGLAFFEDSKNAYVI 243
Query 214 -DASGRKVFVRVVLEPEK 230
D SG+K+++ + L EK
Sbjct 244 DDESGQKIYISLNLREEK 261
>gi|295100692|emb|CBK98237.1| methionyl-tRNA formyltransferase [Faecalibacterium prausnitzii
L2-6]
Length=306
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/183 (27%), Positives = 92/183 (51%), Gaps = 15/183 (8%)
Query 46 ERVAEIVERYDLVLSFHCKQRFPAALIDGVR--CVNVHPGFNPYNRGWFPQVFSIIDG-Q 102
E + + +V+++ C P ++++ + C+N+H P RG P +++++G
Sbjct 72 ENIRALAPELIVVVAYGCI--LPKSVLEAPKYGCINLHVSLLPKYRGSAPVQWAVLNGDA 129
Query 103 KVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGSYT 162
+ GV+I ++D+ LD G ++A AI+ ++SG ++ R+ + ++ E AI G+
Sbjct 130 ETGVSIMQMDEGLDTGDVLACERIAIDPEETSGQLFDRVTAVGARVLCETLPAIAAGTLR 189
Query 163 AKSPATEGNLN---LKKDFEQLRRLDLNERGTFGHFLNRLRALTHDDFRNAWFVDASGRK 219
A+ A E L K+ Q + D + H N +R + + + AWFV A GRK
Sbjct 190 AEPQARENASTAPMLSKEMAQFQLTDSAD-----HIHNWVRGM--NPWPGAWFVTAGGRK 242
Query 220 VFV 222
V V
Sbjct 243 VKV 245
>gi|186477758|ref|YP_001859228.1| formyl transferase domain-containing protein [Burkholderia phymatum
STM815]
gi|184194217|gb|ACC72182.1| formyl transferase domain protein [Burkholderia phymatum STM815]
Length=206
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/116 (32%), Positives = 64/116 (56%), Gaps = 1/116 (0%)
Query 76 RCVNVHPGFNPYNRGWFPQVFSIIDGQKVGVTIHEIDDQLDHGPIIAQRECAI-ESWDSS 134
R +N+H PYNRG P ++S +D GV+IH ID+ +D G ++ QRE + E+ ++
Sbjct 65 RFINLHISLLPYNRGADPNLWSFLDATPKGVSIHLIDEGIDTGALLLQREVSFDEASETL 124
Query 135 GSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNLNLKKDFEQLRRLDLNERG 190
S YA+L +L ++++ ++RDG ++ + G + +F L+ L G
Sbjct 125 ASSYAKLQQAINDLFIDNWSSLRDGHIAPRAQSGAGTFHRASEFAALKDALLGAEG 180
>gi|336053901|ref|YP_004562188.1| methionyl-tRNA formyltransferase [Lactobacillus kefiranofaciens
ZW3]
gi|333957278|gb|AEG40086.1| Methionyl-tRNA formyltransferase [Lactobacillus kefiranofaciens
ZW3]
Length=314
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/152 (31%), Positives = 84/152 (56%), Gaps = 13/152 (8%)
Query 19 LQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVERY-DLVLSFHCKQRFPAALIDGVR- 76
+ A D+ V+Q PI + +E + ++++ + DL+++ Q P ++ V+
Sbjct 51 IAAEKHDLPVFQ-PI-------KLSGSEEMKQLIDMHADLIVTAAYGQFLPTKFLNSVKI 102
Query 77 -CVNVHPGFNPYNRGWFPQVFSIIDG-QKVGVTIHEIDDQLDHGPIIAQRECAIESWDSS 134
VNVH P RG P +S+I+G Q+ G+TI E+ ++D G I AQ IE D++
Sbjct 103 AAVNVHGSLLPKYRGGAPIQYSLINGDQETGITIMEMVKKMDAGDIYAQEALKIEPEDNA 162
Query 135 GSVYARLMDIERELVLEHFDAIRDGSYTAKSP 166
G+++ +L + R+L+L+ +I DGS K+P
Sbjct 163 GTLFEKLSYLGRDLLLKTLPSIIDGS-IKKTP 193
>gi|260664025|ref|ZP_05864878.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii SJ-7A-US]
gi|260561911|gb|EEX27880.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii SJ-7A-US]
Length=314
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/183 (30%), Positives = 92/183 (51%), Gaps = 13/183 (7%)
Query 29 YQSPIGQLPGVPRCDVAERVAEIVERYDLVLSFHCKQRFPAALIDGVR--CVNVHPGFNP 86
Y PI Q +PR + + + + DL+++ Q P + + VNVH P
Sbjct 56 YDLPIYQPARLPRSEELDTLINL--HADLIITAAYGQFLPTKFLKSAKIAAVNVHGSLLP 113
Query 87 YNRGWFPQVFSIIDGQK-VGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIE 145
RG P +S+I+G K GVTI E+ ++D G + AQ + +IE D++GS++ ++ +
Sbjct 114 KYRGGAPIQYSLINGDKETGVTIMEMVKEMDAGDMYAQEKLSIEPDDTAGSLFEKMAILG 173
Query 146 RELVLEHFDAIRDGSYTAKSPATEG---NLNLKKDFEQLRRLDLNERGTFGHFLNRLRAL 202
R+L+L+ +I DGS K T + N+ K+ E++ + D+ T N +R L
Sbjct 174 RDLLLKTLPSIIDGSCDKKPQDTSKVVFSPNISKEQERITK-DM----TASQVHNLIRGL 228
Query 203 THD 205
D
Sbjct 229 NPD 231
>gi|238854794|ref|ZP_04645124.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii 269-3]
gi|282933872|ref|ZP_06339220.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii 208-1]
gi|313472304|ref|ZP_07812796.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii 1153]
gi|238832584|gb|EEQ24891.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii 269-3]
gi|239529846|gb|EEQ68847.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii 1153]
gi|281301961|gb|EFA94215.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii 208-1]
Length=314
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/183 (30%), Positives = 92/183 (51%), Gaps = 13/183 (7%)
Query 29 YQSPIGQLPGVPRCDVAERVAEIVERYDLVLSFHCKQRFPAALIDGVR--CVNVHPGFNP 86
Y PI Q +PR + + + + DL+++ Q P + + VNVH P
Sbjct 56 YDLPIYQPARLPRSEELDTLINL--HADLIITAAYGQFLPTKFLKSAKIAAVNVHGSLLP 113
Query 87 YNRGWFPQVFSIIDGQK-VGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIE 145
RG P +S+I+G K GVTI E+ ++D G + AQ + +IE D++GS++ ++ +
Sbjct 114 KYRGGAPIQYSLINGDKETGVTIMEMVKKMDAGDMYAQEKLSIEPDDTAGSLFEKMAILG 173
Query 146 RELVLEHFDAIRDGSYTAKSPATEG---NLNLKKDFEQLRRLDLNERGTFGHFLNRLRAL 202
R+L+L+ +I DGS K T + N+ K+ E++ + D+ T N +R L
Sbjct 174 RDLLLKTLPSIIDGSCDKKPQDTSKVVFSPNISKEQERITK-DM----TASQVHNLIRGL 228
Query 203 THD 205
D
Sbjct 229 NPD 231
>gi|268319211|ref|YP_003292867.1| hypothetical protein FI9785_725 [Lactobacillus johnsonii FI9785]
gi|262397586|emb|CAX66600.1| fmt [Lactobacillus johnsonii FI9785]
Length=314
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (30%), Positives = 102/214 (48%), Gaps = 24/214 (11%)
Query 13 HALAVDLQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVE-RYDLVLSFHCKQRFPAAL 71
H AV A ++ VYQ +L G +E +AE+++ D +++ Q P
Sbjct 45 HQSAVKETALKHNLPVYQP--AKLSG------SEELAELMKIEPDFIITAAYGQFLPTKF 96
Query 72 IDGVRC--VNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEIDDQLDHGPIIAQRECAI 128
+ + VNVH P RG P +S+++G K GVTI E+ ++D G I AQ+ I
Sbjct 97 LKSAKVAPVNVHGSLLPKYRGGAPIQYSVLNGDKETGVTIMEMVKKMDAGDIFAQKALTI 156
Query 129 ESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNL----NLKKDFEQLRRL 184
D+SG+++ +L + R+L+LE DG+ T ++ E + N+ KD E+
Sbjct 157 TDEDTSGTLFDKLSVLGRDLLLETLPKFIDGTVT-RTAQDEDKVVFSPNISKDQEK---- 211
Query 185 DLNERGTFGHFLNRLRALTHDDFRNAWFVDASGR 218
+N T N +RAL D A+F+ R
Sbjct 212 -INLTMTAKEANNLIRALNPDP--GAYFMLGGKR 242
>gi|227890277|ref|ZP_04008082.1| methionyl-tRNA formyltransferase [Lactobacillus johnsonii ATCC
33200]
gi|227849091|gb|EEJ59177.1| methionyl-tRNA formyltransferase [Lactobacillus johnsonii ATCC
33200]
Length=314
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (30%), Positives = 102/214 (48%), Gaps = 24/214 (11%)
Query 13 HALAVDLQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVE-RYDLVLSFHCKQRFPAAL 71
H AV A ++ VYQ +L G +E +AE+++ D +++ Q P
Sbjct 45 HQSAVKETALKHNLPVYQP--AKLSG------SEELAELMKIEPDFIITAAYGQFLPTKF 96
Query 72 IDGVRC--VNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEIDDQLDHGPIIAQRECAI 128
+ + VNVH P RG P +S+++G K GVTI E+ ++D G I AQ+ I
Sbjct 97 LKSAKVAPVNVHGSLLPKYRGGAPIQYSVLNGDKETGVTIMEMVKKMDAGDIFAQKALTI 156
Query 129 ESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNL----NLKKDFEQLRRL 184
D+SG+++ +L + R+L+LE DG+ T ++ E + N+ KD E+
Sbjct 157 TDEDTSGTLFDKLSVLGRDLLLETLPKFIDGTVT-RTAQDEDKVVFSPNISKDQEK---- 211
Query 185 DLNERGTFGHFLNRLRALTHDDFRNAWFVDASGR 218
+N T N +RAL D A+F+ R
Sbjct 212 -INLTMTAKEANNLIRALNPDP--GAYFMLGGKR 242
>gi|329667063|gb|AEB93011.1| methionyl-tRNA formyltransferase [Lactobacillus johnsonii DPC
6026]
Length=314
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (30%), Positives = 102/214 (48%), Gaps = 24/214 (11%)
Query 13 HALAVDLQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVE-RYDLVLSFHCKQRFPAAL 71
H AV A ++ VYQ +L G +E +AE+++ D +++ Q P
Sbjct 45 HQSAVKETALKHNLPVYQP--AKLSG------SEELAELMKIEPDFIITAAYGQFLPTKF 96
Query 72 IDGVRC--VNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEIDDQLDHGPIIAQRECAI 128
+ + VNVH P RG P +S+++G K GVTI E+ ++D G I AQ+ I
Sbjct 97 LKSAKVAPVNVHGSLLPKYRGGAPIQYSVLNGDKETGVTIMEMVKKMDAGDIFAQKALPI 156
Query 129 ESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNL----NLKKDFEQLRRL 184
D+SG+++ +L + R+L+LE DG+ T ++ E + N+ KD E+
Sbjct 157 TDEDTSGTLFDKLSILGRDLLLETLPKFIDGTVT-RTAQDEDKVVFSPNISKDQEK---- 211
Query 185 DLNERGTFGHFLNRLRALTHDDFRNAWFVDASGR 218
+N T N +RAL D A+F+ R
Sbjct 212 -INLSMTAKEANNLIRALNPDP--GAYFMLGGKR 242
>gi|256851319|ref|ZP_05556708.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii 27-2-CHN]
gi|260660743|ref|ZP_05861658.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii 115-3-CHN]
gi|282933236|ref|ZP_06338623.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii 208-1]
gi|256616381|gb|EEU21569.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii 27-2-CHN]
gi|260548465|gb|EEX24440.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii 115-3-CHN]
gi|281302740|gb|EFA94955.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii 208-1]
Length=314
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/183 (29%), Positives = 91/183 (50%), Gaps = 13/183 (7%)
Query 29 YQSPIGQLPGVPRCDVAERVAEIVERYDLVLSFHCKQRFPAALIDGVR--CVNVHPGFNP 86
Y P+ Q +PR + + + + DL+++ Q P + + VNVH P
Sbjct 56 YDLPVYQPARLPRSEELDTLINL--HADLIITAAYGQFLPTKFLKSAKIAAVNVHGSLLP 113
Query 87 YNRGWFPQVFSIIDGQK-VGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIE 145
RG P +S+I+G K GVTI E+ ++D G + AQ + I D++GS++ ++ +
Sbjct 114 KYRGGAPIQYSLINGDKETGVTIMEMVKEMDAGDMYAQEKLPIAPEDTAGSLFEKMAILG 173
Query 146 RELVLEHFDAIRDGSYTAKSPATEG---NLNLKKDFEQLRRLDLNERGTFGHFLNRLRAL 202
R+L+L+ +I DGS K+ T + N+ KD E++ + D+ T N +R L
Sbjct 174 RDLLLKTLPSIIDGSCDKKAQDTTKVVFSPNISKDQERITK-DM----TASQVHNLIRGL 228
Query 203 THD 205
D
Sbjct 229 NPD 231
>gi|297206189|ref|ZP_06923584.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii JV-V16]
gi|297149315|gb|EFH29613.1| methionyl-tRNA formyltransferase [Lactobacillus jensenii JV-V16]
Length=329
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/183 (29%), Positives = 91/183 (50%), Gaps = 13/183 (7%)
Query 29 YQSPIGQLPGVPRCDVAERVAEIVERYDLVLSFHCKQRFPAALIDGVR--CVNVHPGFNP 86
Y P+ Q +PR + + + + DL+++ Q P + + VNVH P
Sbjct 71 YDLPVYQPARLPRSEELDTLINL--HADLIITAAYGQFLPTKFLKSAKIAAVNVHGSLLP 128
Query 87 YNRGWFPQVFSIIDGQK-VGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIE 145
RG P +S+I+G K GVTI E+ ++D G + AQ + I D++GS++ ++ +
Sbjct 129 KYRGGAPIQYSLINGDKETGVTIMEMVKEMDAGDMYAQEKLPIAPEDTAGSLFEKMAILG 188
Query 146 RELVLEHFDAIRDGSYTAKSPATEG---NLNLKKDFEQLRRLDLNERGTFGHFLNRLRAL 202
R+L+L+ +I DGS K+ T + N+ KD E++ + D+ T N +R L
Sbjct 189 RDLLLKTLPSIIDGSCDKKAQDTTKVVFSPNISKDQERITK-DM----TASQVHNLIRGL 243
Query 203 THD 205
D
Sbjct 244 NPD 246
>gi|42519412|ref|NP_965342.1| methionyl-tRNA formyltransferase [Lactobacillus johnsonii NCC
533]
gi|73919399|sp|Q74IM9.1|FMT_LACJO RecName: Full=Methionyl-tRNA formyltransferase
gi|41583700|gb|AAS09308.1| methionyl-tRNA formyltransferase [Lactobacillus johnsonii NCC
533]
Length=314
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (30%), Positives = 102/214 (48%), Gaps = 24/214 (11%)
Query 13 HALAVDLQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVE-RYDLVLSFHCKQRFPAAL 71
H AV A ++ VYQ +L G +E +AE+++ D +++ Q P
Sbjct 45 HQSAVKETALKHNLPVYQP--AKLSG------SEELAELMKIEPDFIITAAYGQFLPTKF 96
Query 72 IDGVRC--VNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEIDDQLDHGPIIAQRECAI 128
+ + VNVH P RG P +S+++G K GVTI E+ ++D G I AQ+ I
Sbjct 97 LKSAKVAPVNVHGSLLPKYRGGAPIQYSVLNGDKETGVTIMEMVKKMDAGDIFAQKALPI 156
Query 129 ESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNL----NLKKDFEQLRRL 184
D+SG+++ +L + R+L+LE DG+ T ++ E + N+ KD E+
Sbjct 157 TDEDTSGTLFDKLSILGRDLLLETLPKFIDGTVT-RTAQDEDKVVFSPNISKDQEK---- 211
Query 185 DLNERGTFGHFLNRLRALTHDDFRNAWFVDASGR 218
+N T N +RAL D A+F+ R
Sbjct 212 -INLSMTAKEANNLIRALNPDP--GAYFMLGGKR 242
>gi|295693193|ref|YP_003601803.1| methionyl-tRNA formyltransferase [Lactobacillus crispatus ST1]
gi|295031299|emb|CBL50778.1| Methionyl-tRNA formyltransferase [Lactobacillus crispatus ST1]
Length=314
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (37%), Positives = 63/108 (59%), Gaps = 3/108 (2%)
Query 56 DLVLSFHCKQRFPAALIDGVR--CVNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEID 112
DL+++ Q P ++ V+ VNVH P RG P +S+I+G K G+TI E+
Sbjct 81 DLIVTAAYGQFLPTKFLNSVKIAAVNVHGSLLPKYRGGAPIQYSLINGDKETGITIMEMV 140
Query 113 DQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGS 160
++D G I AQ IE D++G+++++L + R+L+L+ AI DGS
Sbjct 141 KKMDAGDIYAQEAIKIEPDDNAGTLFSKLSIVGRDLLLKTLPAIIDGS 188
>gi|312984156|ref|ZP_07791502.1| methionyl-tRNA formyltransferase [Lactobacillus crispatus CTV-05]
gi|310894375|gb|EFQ43451.1| methionyl-tRNA formyltransferase [Lactobacillus crispatus CTV-05]
Length=314
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (37%), Positives = 63/108 (59%), Gaps = 3/108 (2%)
Query 56 DLVLSFHCKQRFPAALIDGVR--CVNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEID 112
DL+++ Q P ++ V+ VNVH P RG P +S+I+G K G+TI E+
Sbjct 81 DLIVTAAYGQFLPTKFLNSVKIAAVNVHGSLLPKYRGGAPIQYSLINGDKETGITIMEMV 140
Query 113 DQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGS 160
++D G I AQ IE D++G+++++L + R+L+L+ AI DGS
Sbjct 141 KKMDAGDIYAQEAIKIEPDDNAGTLFSKLSIVGRDLLLKTLPAIIDGS 188
>gi|256849781|ref|ZP_05555212.1| methionyl-tRNA formyltransferase FMT [Lactobacillus crispatus
MV-1A-US]
gi|262046520|ref|ZP_06019481.1| methionyl-tRNA formyltransferase [Lactobacillus crispatus MV-3A-US]
gi|256713270|gb|EEU28260.1| methionyl-tRNA formyltransferase FMT [Lactobacillus crispatus
MV-1A-US]
gi|260572969|gb|EEX29528.1| methionyl-tRNA formyltransferase [Lactobacillus crispatus MV-3A-US]
Length=314
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (37%), Positives = 63/108 (59%), Gaps = 3/108 (2%)
Query 56 DLVLSFHCKQRFPAALIDGVR--CVNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEID 112
DL+++ Q P ++ V+ VNVH P RG P +S+I+G K G+TI E+
Sbjct 81 DLIVTAAYGQFLPTKFLNSVKIAAVNVHGSLLPKYRGGAPIQYSLINGDKETGITIMEMV 140
Query 113 DQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGS 160
++D G I AQ IE D++G+++++L + R+L+L+ AI DGS
Sbjct 141 KKMDAGDIYAQEAIKIEPDDNAGTLFSKLSIVGRDLLLKTLPAIIDGS 188
>gi|256843397|ref|ZP_05548885.1| methionyl-tRNA formyltransferase [Lactobacillus crispatus 125-2-CHN]
gi|293380311|ref|ZP_06626385.1| methionyl-tRNA formyltransferase [Lactobacillus crispatus 214-1]
gi|256614817|gb|EEU20018.1| methionyl-tRNA formyltransferase [Lactobacillus crispatus 125-2-CHN]
gi|290923126|gb|EFE00055.1| methionyl-tRNA formyltransferase [Lactobacillus crispatus 214-1]
Length=314
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (37%), Positives = 63/108 (59%), Gaps = 3/108 (2%)
Query 56 DLVLSFHCKQRFPAALIDGVR--CVNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEID 112
DL+++ Q P ++ V+ VNVH P RG P +S+I+G K G+TI E+
Sbjct 81 DLIVTAAYGQFLPTKFLNSVKIAAVNVHGSLLPKYRGGAPIQYSLINGDKETGITIMEMV 140
Query 113 DQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGS 160
++D G I AQ IE D++G+++++L + R+L+L+ AI DGS
Sbjct 141 KKMDAGDIYAQEAIKIEPDDNAGTLFSKLSIVGRDLLLKTLPAIIDGS 188
>gi|227878883|ref|ZP_03996788.1| methionyl-tRNA formyltransferase FMT [Lactobacillus crispatus
JV-V01]
gi|227861517|gb|EEJ69131.1| methionyl-tRNA formyltransferase FMT [Lactobacillus crispatus
JV-V01]
Length=308
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (37%), Positives = 63/108 (59%), Gaps = 3/108 (2%)
Query 56 DLVLSFHCKQRFPAALIDGVR--CVNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEID 112
DL+++ Q P ++ V+ VNVH P RG P +S+I+G K G+TI E+
Sbjct 75 DLIVTAAYGQFLPTKFLNSVKIAAVNVHGSLLPKYRGGAPIQYSLINGDKETGITIMEMV 134
Query 113 DQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGS 160
++D G I AQ IE D++G+++++L + R+L+L+ AI DGS
Sbjct 135 KKMDAGDIYAQEAIKIEPDDNAGTLFSKLSIVGRDLLLKTLPAIIDGS 182
>gi|58337595|ref|YP_194180.1| methionyl-tRNA formyltransferase FMT [Lactobacillus acidophilus
NCFM]
gi|227904235|ref|ZP_04022040.1| methionyl-tRNA formyltransferase FMT [Lactobacillus acidophilus
ATCC 4796]
gi|73919398|sp|Q5FJH5.1|FMT_LACAC RecName: Full=Methionyl-tRNA formyltransferase
gi|58254912|gb|AAV43149.1| methionyl-tRNA formyltransferase FMT [Lactobacillus acidophilus
NCFM]
gi|227867883|gb|EEJ75304.1| methionyl-tRNA formyltransferase FMT [Lactobacillus acidophilus
ATCC 4796]
Length=314
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/169 (31%), Positives = 90/169 (54%), Gaps = 14/169 (8%)
Query 45 AERVAEIVERY-DLVLSFHCKQRFPAALIDGVR--CVNVHPGFNPYNRGWFPQVFSIIDG 101
+E + ++++ + DL+++ Q P + V VNVH P RG P +S+I+G
Sbjct 69 SEEMNQLIDMHADLIVTAAYGQFLPTKFLKSVNIAAVNVHGSLLPKYRGGAPIQYSLING 128
Query 102 QK-VGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGS 160
K G+TI E+ ++D G I AQ IE D++G+++++L + R+L+L+ +I DGS
Sbjct 129 DKETGITIMEMVKKMDAGDIYAQEAIKIEPEDNAGTLFSKLSILGRDLLLKTLPSIIDGS 188
Query 161 YTAKSPATEGNL----NLKKDFEQLRRLDLNERGTFGHFLNRLRALTHD 205
K+P + N+ K+ E+L +D+ T N +RAL D
Sbjct 189 -VKKTPQDPDKVVFSPNITKEQERL-SIDM----TAEQANNMIRALNPD 231
>gi|297583986|ref|YP_003699766.1| methionyl-tRNA formyltransferase [Bacillus selenitireducens MLS10]
gi|297142443|gb|ADH99200.1| methionyl-tRNA formyltransferase [Bacillus selenitireducens MLS10]
Length=317
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/148 (33%), Positives = 77/148 (53%), Gaps = 11/148 (7%)
Query 56 DLVLSFHCKQRFPAALIDGVR--CVNVHPGFNPYNRGWFPQVFSIIDGQ-KVGVTIHEID 112
DL+++ Q P +++ R C+NVH P RG P ++IDG+ K G+TI +
Sbjct 80 DLLVTAAYGQILPKEILESTRLGCINVHASLLPEYRGGAPIHQAVIDGKNKTGITIMYMV 139
Query 113 DQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEG-- 170
++LD G I+ QRE I D++G+++ RL I EL+LE + G + + E
Sbjct 140 EKLDAGDILTQRETPITDEDTTGTMHDRLSRIGAELLLETIPRLAAGELSPRRQDEEKVT 199
Query 171 -NLNLKKDFEQLRRLDLNE--RGTFGHF 195
N+KK+ E R+D ++ R F H
Sbjct 200 FASNIKKEQE---RVDFSQSARAVFNHI 224
>gi|338762509|gb|EGP13777.1| methionyl-tRNA formyltransferase [Lactobacillus johnsonii pf01]
Length=314
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/214 (30%), Positives = 102/214 (48%), Gaps = 24/214 (11%)
Query 13 HALAVDLQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVE-RYDLVLSFHCKQRFPAAL 71
H AV A ++ VYQ +L G +E +AE+++ D +++ Q P
Sbjct 45 HQSAVKETALKHNLPVYQP--AKLSG------SEELAELMKIEPDFIITAAYGQFLPTKF 96
Query 72 IDGVRC--VNVHPGFNPYNRGWFPQVFSIIDGQK-VGVTIHEIDDQLDHGPIIAQRECAI 128
+ + VNVH P RG P +S+++G K GVTI E+ ++D G I AQ+ I
Sbjct 97 LKSAKVAPVNVHGSLLPKYRGGAPIQYSVLNGDKETGVTIMEMVKKMDAGDIFAQKALPI 156
Query 129 ESWDSSGSVYARLMDIERELVLEHFDAIRDGSYTAKSPATEGNL----NLKKDFEQLRRL 184
D+SG+++ +L + R+L+LE DG+ T ++ E + N+ KD E+
Sbjct 157 TDEDTSGTLFDKLSILGRDLLLETLPKFIDGTVT-RTVQDEDKVVFSPNISKDQEK---- 211
Query 185 DLNERGTFGHFLNRLRALTHDDFRNAWFVDASGR 218
+N T N +RAL D A+F+ R
Sbjct 212 -INLSMTAKEANNLIRALNPDP--GAYFMLGGKR 242
>gi|161507729|ref|YP_001577690.1| methionyl-tRNA formyltransferase FMT [Lactobacillus helveticus
DPC 4571]
gi|160348718|gb|ABX27392.1| Methionyl-tRNA formyltransferase FMT [Lactobacillus helveticus
DPC 4571]
Length=315
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/146 (30%), Positives = 81/146 (56%), Gaps = 12/146 (8%)
Query 19 LQARHGDMDVYQSPIGQLPGVPRCDVAERVAEIVERY-DLVLSFHCKQRFPAALIDGVR- 76
+ A D+ V+Q P+ + +E + ++++ + DL+++ Q P + V+
Sbjct 52 IAAEKHDLPVFQ-PV-------KLSGSEEMQQVIDMHADLIVTAAYGQFLPTKFLKSVKI 103
Query 77 -CVNVHPGFNPYNRGWFPQVFSIIDG-QKVGVTIHEIDDQLDHGPIIAQRECAIESWDSS 134
VNVH P RG P +S+I+G + G+TI E+ ++D G I +Q+ IE D++
Sbjct 104 AAVNVHGSLLPKYRGGAPIQYSLINGDAETGITIMEMVKKMDAGDIYSQKAIKIEPDDNA 163
Query 135 GSVYARLMDIERELVLEHFDAIRDGS 160
G+++++L + R+L+LE +I DGS
Sbjct 164 GTLFSKLSIVGRDLLLETLPSIIDGS 189
>gi|328465623|gb|EGF36846.1| methionyl-tRNA formyltransferase [Lactobacillus helveticus MTCC
5463]
Length=278
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/120 (32%), Positives = 71/120 (60%), Gaps = 4/120 (3%)
Query 45 AERVAEIVERY-DLVLSFHCKQRFPAALIDGVR--CVNVHPGFNPYNRGWFPQVFSIIDG 101
+E + ++++ + DL+++ Q P + V+ VNVH P RG P +S+I+G
Sbjct 63 SEEMQQVIDMHADLIVTAAYGQFLPTKFLKSVKIAAVNVHGSLLPKYRGGAPIQYSLING 122
Query 102 -QKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEHFDAIRDGS 160
+ G+TI E+ ++D G I +Q+ IE D++G+++++L + R+L+LE +I DGS
Sbjct 123 DAETGITIMEMVKKMDAGDIYSQKAIKIEPDDNAGTLFSKLSIVGRDLLLETLPSIIDGS 182
Lambda K H
0.323 0.140 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 313223274342
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40