BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3408

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610544|ref|NP_217925.1|  hypothetical protein Rv3408 [Mycoba...   270    3e-71
gi|31794589|ref|NP_857082.1|  hypothetical protein Mb3442 [Mycoba...   268    3e-70
gi|15843003|ref|NP_338040.1|  hypothetical protein MT3516 [Mycoba...   262    1e-68
gi|240170730|ref|ZP_04749389.1|  hypothetical protein MkanA1_1555...   223    5e-57
gi|326382371|ref|ZP_08204063.1|  toxin [Gordonia neofelifaecis NR...   139    1e-31
gi|284989378|ref|YP_003407932.1|  PilT protein domain-containing ...   100    6e-20
gi|120402717|ref|YP_952546.1|  PilT domain-containing protein [My...  94.7    3e-18
gi|334337553|ref|YP_004542705.1|  PilT protein domain protein [Is...  90.9    6e-17
gi|296166224|ref|ZP_06848663.1|  PIN family toxin-antitoxin syste...  90.1    9e-17
gi|336176937|ref|YP_004582312.1|  hypothetical protein FsymDg_088...  88.6    2e-16
gi|269978026|ref|ZP_06184976.1|  toxin-antitoxin system, toxin co...  88.6    3e-16
gi|307700859|ref|ZP_07637884.1|  toxin-antitoxin system, toxin co...  88.6    3e-16
gi|284044421|ref|YP_003394761.1|  hypothetical protein Cwoe_2967 ...  88.2    4e-16
gi|111220042|ref|YP_710836.1|  hypothetical protein FRAAL0552 [Fr...  82.8    1e-14
gi|336179976|ref|YP_004585351.1|  PilT protein domain-containing ...  81.6    4e-14
gi|336178644|ref|YP_004584019.1|  PilT protein domain-containing ...  79.0    2e-13
gi|15842977|ref|NP_338014.1|  hypothetical protein MT3492 [Mycoba...  75.9    2e-12
gi|15610520|ref|NP_217901.1|  hypothetical protein Rv3384c [Mycob...  75.9    2e-12
gi|300790923|ref|YP_003771214.1|  hypothetical protein AMED_9123 ...  75.1    3e-12
gi|336177878|ref|YP_004583253.1|  hypothetical protein FsymDg_189...  75.1    3e-12
gi|288917440|ref|ZP_06411806.1|  hypothetical protein FrEUN1fDRAF...  74.3    6e-12
gi|336178809|ref|YP_004584184.1|  PilT protein domain-containing ...  72.0    3e-11
gi|284045881|ref|YP_003396221.1|  hypothetical protein Cwoe_4432 ...  70.5    8e-11
gi|340628364|ref|YP_004746816.1|  hypothetical protein MCAN_34091...  70.5    8e-11
gi|86741564|ref|YP_481964.1|  PilT protein-like protein [Frankia ...  69.3    2e-10
gi|336178692|ref|YP_004584067.1|  hypothetical protein FsymDg_281...  68.9    2e-10
gi|296169352|ref|ZP_06850977.1|  PIN family toxin-antitoxin syste...  68.9    3e-10
gi|302864894|ref|YP_003833531.1|  hypothetical protein Micau_0388...  68.6    3e-10
gi|256372388|ref|YP_003110212.1|  PilT protein domain-containing ...  67.8    5e-10
gi|315501180|ref|YP_004080067.1|  hypothetical protein ML5_0364 [...  67.0    8e-10
gi|284029011|ref|YP_003378942.1|  hypothetical protein Kfla_1038 ...  66.2    1e-09
gi|229821860|ref|YP_002883386.1|  twitching mobility protein PilT...  65.5    2e-09
gi|306818894|ref|ZP_07452615.1|  conserved hypothetical protein [...  63.5    9e-09
gi|325067177|ref|ZP_08125850.1|  PilT protein domain-containing p...  63.5    1e-08
gi|108802491|ref|YP_642687.1|  hypothetical protein Mmcs_5531 [My...  62.8    1e-08
gi|307701081|ref|ZP_07638106.1|  toxin-antitoxin system, toxin co...  62.0    3e-08
gi|296169436|ref|ZP_06851057.1|  PIN family toxin-antitoxin syste...  61.6    4e-08
gi|182435669|ref|YP_001823388.1|  hypothetical protein SGR_1876 [...  61.6    4e-08
gi|227875583|ref|ZP_03993723.1|  hypothetical protein HMPREF0577_...  60.8    6e-08
gi|284029018|ref|YP_003378949.1|  hypothetical protein Kfla_1046 ...  60.5    8e-08
gi|269977174|ref|ZP_06184147.1|  toxin-antitoxin system, toxin co...  60.5    8e-08
gi|326771646|ref|ZP_08230931.1|  toxin-antitoxin system, toxin co...  60.5    8e-08
gi|312198893|ref|YP_004018954.1|  PilT protein domain protein [Fr...  57.4    6e-07
gi|15609099|ref|NP_216478.1|  hypothetical protein Rv1962c [Mycob...  55.1    4e-06
gi|340358514|ref|ZP_08681031.1|  PilT domain protein [Actinomyces...  51.6    3e-05
gi|320108976|ref|YP_004184566.1|  hypothetical protein AciPR4_382...  49.7    2e-04
gi|145223797|ref|YP_001134475.1|  PilT domain-containing protein ...  47.4    7e-04
gi|269795913|ref|YP_003315368.1|  hypothetical protein Sked_26300...  47.4    7e-04
gi|336115824|ref|YP_004570590.1|  hypothetical protein MLP_01730 ...  47.0    9e-04
gi|124516076|gb|EAY57585.1|  conserved hypothetical protein [Lept...  46.6    0.001


>gi|15610544|ref|NP_217925.1| hypothetical protein Rv3408 [Mycobacterium tuberculosis H37Rv]
 gi|148663272|ref|YP_001284795.1| hypothetical protein MRA_3448 [Mycobacterium tuberculosis H37Ra]
 gi|167968706|ref|ZP_02550983.1| hypothetical protein MtubH3_11975 [Mycobacterium tuberculosis 
H37Ra]
 gi|307086187|ref|ZP_07495300.1| toxin [Mycobacterium tuberculosis SUMu012]
 gi|332278240|sp|Q50717.3|VPC47_MYCTU RecName: Full=Probable ribonuclease VapC47; Short=Probable RNase 
VapC47; AltName: Full=Toxin VapC47
 gi|1449379|emb|CAB01015.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148507424|gb|ABQ75233.1| hypothetical protein MRA_3448 [Mycobacterium tuberculosis H37Ra]
 gi|308364354|gb|EFP53205.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=136

 Score =  270 bits (691),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 135/136 (99%), Positives = 136/136 (100%), Gaps = 0/136 (0%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE
Sbjct  1    MIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS  120
            RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS
Sbjct  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS  120

Query  121  GCREVGFVTASPGAVR  136
            GCREVGFVTASPGAVR
Sbjct  121  GCREVGFVTASPGAVR  136


>gi|31794589|ref|NP_857082.1| hypothetical protein Mb3442 [Mycobacterium bovis AF2122/97]
 gi|121639333|ref|YP_979557.1| hypothetical protein BCG_3478 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148824615|ref|YP_001289369.1| hypothetical protein TBFG_13442 [Mycobacterium tuberculosis F11]
 67 more sequence titles
 Length=136

 Score =  268 bits (684),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 134/136 (99%), Positives = 135/136 (99%), Gaps = 0/136 (0%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVE MRVVARYGQPGQTE
Sbjct  1    MIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVELMRVVARYGQPGQTE  60

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS  120
            RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS
Sbjct  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS  120

Query  121  GCREVGFVTASPGAVR  136
            GCREVGFVTASPGAVR
Sbjct  121  GCREVGFVTASPGAVR  136


>gi|15843003|ref|NP_338040.1| hypothetical protein MT3516 [Mycobacterium tuberculosis CDC1551]
 gi|308378313|ref|ZP_07668719.1| toxin [Mycobacterium tuberculosis SUMu009]
 gi|308380689|ref|ZP_07669253.1| toxin [Mycobacterium tuberculosis SUMu011]
 gi|13883344|gb|AAK47854.1| hypothetical protein MT3516 [Mycobacterium tuberculosis CDC1551]
 gi|308352931|gb|EFP41782.1| toxin [Mycobacterium tuberculosis SUMu009]
 gi|308360743|gb|EFP49594.1| toxin [Mycobacterium tuberculosis SUMu011]
Length=133

 Score =  262 bits (670),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 132/133 (99%), Positives = 132/133 (99%), Gaps = 0/133 (0%)

Query  4    MDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTERAR  63
            MDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVE MRVVARYGQPGQTERAR
Sbjct  1    MDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVELMRVVARYGQPGQTERAR  60

Query  64   YLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGCR  123
            YLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGCR
Sbjct  61   YLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGCR  120

Query  124  EVGFVTASPGAVR  136
            EVGFVTASPGAVR
Sbjct  121  EVGFVTASPGAVR  133


>gi|240170730|ref|ZP_04749389.1| hypothetical protein MkanA1_15552 [Mycobacterium kansasii ATCC 
12478]
Length=136

 Score =  223 bits (569),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 112/136 (83%), Positives = 119/136 (88%), Gaps = 0/136 (0%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IY+DTSALTKLLI+EPET ELR WLT  + QGE AATS L RVE MRVVAR G+ GQ E
Sbjct  1    MIYLDTSALTKLLIAEPETDELRNWLTVHTDQGEFAATSALSRVELMRVVARQGESGQAE  60

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS  120
            RARYLLDGLDILPLT PVI LAETIGPATLR+LDAIHLAAA QIKRELTAFVTYDHRLL+
Sbjct  61   RARYLLDGLDILPLTAPVINLAETIGPATLRTLDAIHLAAATQIKRELTAFVTYDHRLLA  120

Query  121  GCREVGFVTASPGAVR  136
            GC EVG VTASPGAVR
Sbjct  121  GCLEVGLVTASPGAVR  136


>gi|326382371|ref|ZP_08204063.1| toxin [Gordonia neofelifaecis NRRL B-59395]
 gi|326199101|gb|EGD56283.1| toxin [Gordonia neofelifaecis NRRL B-59395]
Length=142

 Score =  139 bits (351),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 69/133 (52%), Positives = 91/133 (69%), Gaps = 0/133 (0%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IY+DTSAL KLL++E E+ +L +WL  Q   GE+  +  L RVE MR VAR  +PG  +
Sbjct  1    MIYLDTSALVKLLVAEAESADLVSWLDTQVNSGENLVSGDLARVEVMRTVARLDEPGLLD  60

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS  120
             AR +LDGLD +P +E V+  A  IGP+TLRS+DAIHLAAA+Q+   LTAFV YD RL  
Sbjct  61   DARMMLDGLDSIPTSETVVDEATVIGPSTLRSVDAIHLAAASQLGSALTAFVAYDVRLHD  120

Query  121  GCREVGFVTASPG  133
               E+G   ++PG
Sbjct  121  AAAELGLPASAPG  133


>gi|284989378|ref|YP_003407932.1| PilT protein domain-containing protein [Geodermatophilus obscurus 
DSM 43160]
 gi|284062623|gb|ADB73561.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=130

 Score =  100 bits (249),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 57/133 (43%), Positives = 79/133 (60%), Gaps = 3/133 (2%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +I +D+SAL KL++ EPE+  L  WLT+++      A S L RVE +R VAR   P    
Sbjct  1    MIAIDSSALVKLVLDEPESAALEGWLTSRAPLS--VAASDLVRVELIRAVAR-AAPAGVP  57

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS  120
            RAR LL G+D++P+T  ++  A  +GP +LRSLDA+HLA A  +   L AFV YD RL  
Sbjct  58   RARTLLTGVDLVPVTRDLLETAADLGPPSLRSLDALHLATALSLGSALDAFVVYDERLAQ  117

Query  121  GCREVGFVTASPG  133
               + G    +P 
Sbjct  118  AATDAGLPVVAPS  130


>gi|120402717|ref|YP_952546.1| PilT domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955535|gb|ABM12540.1| PilT protein domain protein [Mycobacterium vanbaalenii PYR-1]
Length=134

 Score = 94.7 bits (234),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 62/135 (46%), Positives = 81/135 (60%), Gaps = 4/135 (2%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IY+DTSA+ KL+++EPE+ EL  WL  +    +   TS +GRVE  R  A         
Sbjct  1    MIYLDTSAMVKLVVAEPESEELIDWLNERLTH-DPIVTSIIGRVELHRA-ALRAGAEAMA  58

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRE-LTAFVTYDHRLL  119
             AR +LDG+D L LTEP+  LA T+ PA LR+LDA+HL A A+I RE LTA   YD RL+
Sbjct  59   AAREVLDGVDTLVLTEPIAALAGTMVPAELRTLDALHL-ATAEIHREGLTAICAYDRRLV  117

Query  120  SGCREVGFVTASPGA  134
               R       +PGA
Sbjct  118  DAARARKLPVVAPGA  132


>gi|334337553|ref|YP_004542705.1| PilT protein domain protein [Isoptericola variabilis 225]
 gi|334107921|gb|AEG44811.1| PilT protein domain protein [Isoptericola variabilis 225]
Length=149

 Score = 90.9 bits (224),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 53/132 (41%), Positives = 73/132 (56%), Gaps = 4/132 (3%)

Query  3    YMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTERA  62
            Y+DTSAL KL++ EPE+  L+ W+ A   +     +S L R E +R V R   P     A
Sbjct  3    YLDTSALVKLVVREPESAALKKWVDANDDR---LVSSDLARTELLRAV-RRAAPEHAVTA  58

Query  63   RYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGC  122
            R +LD +D+L LT      A  + P  +RSLDA+HLA A ++  EL + VTYD RL    
Sbjct  59   RAVLDAVDLLALTTADFEAAAHLDPDIVRSLDALHLATALRLGDELESMVTYDVRLADAA  118

Query  123  REVGFVTASPGA  134
            R  G    +PG+
Sbjct  119  RYHGVAVTAPGS  130


>gi|296166224|ref|ZP_06848663.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898408|gb|EFG77975.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=131

 Score = 90.1 bits (222),  Expect = 9e-17, Method: Compositional matrix adjust.
 Identities = 54/131 (42%), Positives = 80/131 (62%), Gaps = 3/131 (2%)

Query  3    YMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTERA  62
            Y+DTSAL KL+++E E+T L+ +L A +   +   T+ L R E +R V+  G  G   +A
Sbjct  4    YLDTSALVKLVVAEDESTALQEYLRAVAA--DTLFTAALARTELIRAVSGAG-AGAVSQA  60

Query  63   RYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGC  122
            R +LD LD + LT  ++  A  + PA LR+LDAIHLAAA +   +L A VTYD R+ +  
Sbjct  61   RRILDQLDTINLTRGLLDAAADLRPARLRTLDAIHLAAAQRAGTDLRAVVTYDTRMAAAA  120

Query  123  REVGFVTASPG  133
             ++G V  +P 
Sbjct  121  ADLGIVIEAPA  131


>gi|336176937|ref|YP_004582312.1| hypothetical protein FsymDg_0881 [Frankia symbiont of Datisca 
glomerata]
 gi|334857917|gb|AEH08391.1| hypothetical protein FsymDg_0881 [Frankia symbiont of Datisca 
glomerata]
Length=132

 Score = 88.6 bits (218),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 53/134 (40%), Positives = 79/134 (59%), Gaps = 4/134 (2%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARY--GQPGQ  58
            +IY+D+ AL KL+++E ET+ LR +L+A +G  +   TS L R E +R V R        
Sbjct  1    MIYLDSCALVKLVVTEAETSALRAFLSAHAGYPQ--VTSLLARTEVVRAVRRATADDADL  58

Query  59   TERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRL  118
             + A  +L+ LD + L  P++  A  +    +R+LDAIHLAAA ++   LTAFVTYD RL
Sbjct  59   YKAAVTMLNRLDHIILDRPILDDAGAVADPLVRTLDAIHLAAARRLGDSLTAFVTYDRRL  118

Query  119  LSGCREVGFVTASP  132
             +   + GF   +P
Sbjct  119  ATAALDFGFPVRAP  132


>gi|269978026|ref|ZP_06184976.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris 28-1]
 gi|269933535|gb|EEZ90119.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris 28-1]
Length=133

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 54/133 (41%), Positives = 74/133 (56%), Gaps = 4/133 (3%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            V Y+DTSAL K L  E E+     W+ A +   +   TS   RVE +RV  R G   + +
Sbjct  2    VFYLDTSALVKALHQEAESEAFAQWMAANA---QHCYTSDFTRVELLRVAGRLGAATRVQ  58

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS  120
             AR +LD L+++ ++  +   A  + PATLRSLDAIHLA A Q+  +L A VTYD RL  
Sbjct  59   -ARAVLDALNLVAISPAICDTAGLLEPATLRSLDAIHLATALQLGDDLEALVTYDLRLGQ  117

Query  121  GCREVGFVTASPG  133
              + +     SPG
Sbjct  118  AAQMLAIPLLSPG  130


>gi|307700859|ref|ZP_07637884.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris FB024-16]
 gi|307613854|gb|EFN93098.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris FB024-16]
Length=133

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 54/134 (41%), Positives = 74/134 (56%), Gaps = 4/134 (2%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            V Y+DTSAL K L  E E+     W+ A +   +   TS   RVE +RV  R G   + +
Sbjct  2    VFYLDTSALVKALHQEAESEAFAQWMAANA---QHCYTSDFTRVELLRVTGRLGAATRVQ  58

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS  120
             AR +LD L+++ ++  +   A  + PATLRSLDAIHLA A Q+  +L A VTYD RL  
Sbjct  59   -ARAVLDALNLVAISPAICDTAGLLEPATLRSLDAIHLATALQLGDDLEALVTYDLRLGQ  117

Query  121  GCREVGFVTASPGA  134
              + +     SPG 
Sbjct  118  AAQMLAIPLLSPGC  131


>gi|284044421|ref|YP_003394761.1| hypothetical protein Cwoe_2967 [Conexibacter woesei DSM 14684]
 gi|283948642|gb|ADB51386.1| conserved hypothetical protein [Conexibacter woesei DSM 14684]
Length=133

 Score = 88.2 bits (217),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 52/133 (40%), Positives = 82/133 (62%), Gaps = 5/133 (3%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            V Y+D+SAL KL++ EPE+  L   L ++  +     +  L  VE +R V  +G P  T+
Sbjct  6    VCYLDSSALVKLVVREPESATLTRHLRSRPVR----VSCALATVEVVRAVGAHG-PEATD  60

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS  120
            RAR +LDG+D++ L +P++  A T+    LRSLDAIHLAAA  ++ +    +TYD R+ +
Sbjct  61   RARQVLDGVDMIRLDDPLLHAAATLDGPLLRSLDAIHLAAALALREDEVELITYDRRMAA  120

Query  121  GCREVGFVTASPG  133
               ++GFV ++P 
Sbjct  121  HAEQLGFVVSAPA  133


>gi|111220042|ref|YP_710836.1| hypothetical protein FRAAL0552 [Frankia alni ACN14a]
 gi|111147574|emb|CAJ59227.1| hypothetical protein; putative PilT domain [Frankia alni ACN14a]
Length=138

 Score = 82.8 bits (203),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 50/133 (38%), Positives = 72/133 (55%), Gaps = 1/133 (0%)

Query  2    IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER  61
            IY+DTSAL K+ I+E E+ +LR WL  Q  Q     +S L  VE  R++           
Sbjct  5    IYLDTSALAKMFIAEKESDDLRQWLVEQV-QPLRLVSSALLAVELTRLLGLINPAILGLA  63

Query  62   ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG  121
              +L   +D++ +T P++  A  + PA LR+LDAIHLA A  ++  L   ++YD  L+  
Sbjct  64   ESFLSSDVDLVQITPPLLADASRVPPARLRTLDAIHLATALDLRDSLDIVLSYDKLLIEA  123

Query  122  CREVGFVTASPGA  134
                G V ASPGA
Sbjct  124  VSASGLVPASPGA  136


>gi|336179976|ref|YP_004585351.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334860956|gb|AEH11430.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=138

 Score = 81.6 bits (200),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 50/135 (38%), Positives = 72/135 (54%), Gaps = 1/135 (0%)

Query  2    IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER  61
            +Y+DTSAL KL I+E ET +LR W   Q  +     +STL  VE  R++           
Sbjct  5    VYLDTSALAKLFIAEKETPDLRQWFADQV-EPLRLVSSTLLAVELTRLLNLVNPTMLGPA  63

Query  62   ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG  121
              +L   +D++ +T P++G A  + P  LR+LDAIHLA A  ++  L   ++YD  L+  
Sbjct  64   ESFLSADVDLVEITPPLLGDAARVPPPRLRTLDAIHLATALDLRDSLDVVLSYDKLLVEA  123

Query  122  CREVGFVTASPGAVR  136
                G   ASPGA R
Sbjct  124  VHASGLPAASPGAGR  138


>gi|336178644|ref|YP_004584019.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334859624|gb|AEH10098.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=138

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 56/136 (42%), Positives = 74/136 (55%), Gaps = 6/136 (4%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IY+DTSA+ KL+  E E+ +L  WL AQ  Q E   TS L  VE  R + R  +P +  
Sbjct  1    MIYLDTSAIVKLIRPELESDKLVDWLNAQ--QNERVITSKLAEVELPRAL-RREEPARLA  57

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQI---KRELTAFVTYDHR  117
                +L  LD L + + V   A       LRSLDAIHLA A Q+    + ++AFVTYD R
Sbjct  58   AVAGVLAHLDRLDIDDAVRATAGAYPFPHLRSLDAIHLATADQLVASGKTVSAFVTYDRR  117

Query  118  LLSGCREVGFVTASPG  133
            L     E+G   A+PG
Sbjct  118  LAVTAGELGLAVAAPG  133


>gi|15842977|ref|NP_338014.1| hypothetical protein MT3492 [Mycobacterium tuberculosis CDC1551]
 gi|308232444|ref|ZP_07664085.1| toxin [Mycobacterium tuberculosis SUMu001]
 gi|308370247|ref|ZP_07666899.1| toxin [Mycobacterium tuberculosis SUMu002]
 19 more sequence titles
 Length=131

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 46/131 (36%), Positives = 71/131 (55%), Gaps = 5/131 (3%)

Query  2    IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER  61
            IY+D+SA+ KL + EPE+  LR +L  +  +     +S L R E MR +   G+  +   
Sbjct  5    IYLDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDKGESARKA-  59

Query  62   ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG  121
             R  L  LD+L + + V+ LA  + P  LR+LDAIHLA A ++  +L    TYD R+   
Sbjct  60   GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA  119

Query  122  CREVGFVTASP  132
             + +G    +P
Sbjct  120  AKTLGMAVIAP  130


>gi|15610520|ref|NP_217901.1| hypothetical protein Rv3384c [Mycobacterium tuberculosis H37Rv]
 gi|31794564|ref|NP_857057.1| hypothetical protein Mb3416c [Mycobacterium bovis AF2122/97]
 gi|121639308|ref|YP_979532.1| hypothetical protein BCG_3453c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 56 more sequence titles
 Length=130

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 46/131 (36%), Positives = 71/131 (55%), Gaps = 5/131 (3%)

Query  2    IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER  61
            IY+D+SA+ KL + EPE+  LR +L  +  +     +S L R E MR +   G+  +   
Sbjct  4    IYLDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDKGESARKA-  58

Query  62   ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG  121
             R  L  LD+L + + V+ LA  + P  LR+LDAIHLA A ++  +L    TYD R+   
Sbjct  59   GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA  118

Query  122  CREVGFVTASP  132
             + +G    +P
Sbjct  119  AKTLGMAVIAP  129


>gi|300790923|ref|YP_003771214.1| hypothetical protein AMED_9123 [Amycolatopsis mediterranei U32]
 gi|299800437|gb|ADJ50812.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
 gi|340532619|gb|AEK47824.1| hypothetical protein RAM_46795 [Amycolatopsis mediterranei S699]
Length=138

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 56/135 (42%), Positives = 72/135 (54%), Gaps = 4/135 (2%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IY+DT+AL KL+  E E+  L  WL  +  QG    TSTL  VE  R + R   PG   
Sbjct  1    MIYLDTAALVKLIRHEAESAALVDWLDER--QGTVLVTSTLAEVEVSRALLR-SDPGLLT  57

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAA-AQIKRELTAFVTYDHRLL  119
                ++  +    + + V   A       LRSLDAIHLA A A   R+LT+FVTYD RLL
Sbjct  58   DVPAVMARVAKYEIDDVVRRTAAAYPSPDLRSLDAIHLATAHAVFGRQLTSFVTYDKRLL  117

Query  120  SGCREVGFVTASPGA  134
            +    +G  T SPGA
Sbjct  118  AVAEALGLPTDSPGA  132


>gi|336177878|ref|YP_004583253.1| hypothetical protein FsymDg_1894 [Frankia symbiont of Datisca 
glomerata]
 gi|334858858|gb|AEH09332.1| hypothetical protein FsymDg_1894 [Frankia symbiont of Datisca 
glomerata]
Length=136

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 49/135 (37%), Positives = 72/135 (54%), Gaps = 5/135 (3%)

Query  2    IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVV-ARYG--QPGQ  58
            IY+D+SA+ K L++E ++  L   +      G+   +S+L  +E    + AR+G      
Sbjct  3    IYLDSSAILKRLVAETDSLALVAAVDKHHEDGDLLVSSSLAWIEVTHALRARFGTDSASA  62

Query  59   TERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRL  118
            T  A   L G+   PL+  V+ LA  IGPA LRSLDAIHL +A  +  +    +TYD RL
Sbjct  63   TVHADAALSGVAEHPLSPEVVSLARRIGPAVLRSLDAIHLTSALLLDAD--QMLTYDDRL  120

Query  119  LSGCREVGFVTASPG  133
               C + G V  +PG
Sbjct  121  AMACAQSGLVFTAPG  135


>gi|288917440|ref|ZP_06411806.1| hypothetical protein FrEUN1fDRAFT_1501 [Frankia sp. EUN1f]
 gi|288351143|gb|EFC85354.1| hypothetical protein FrEUN1fDRAFT_1501 [Frankia sp. EUN1f]
Length=141

 Score = 74.3 bits (181),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 50/133 (38%), Positives = 69/133 (52%), Gaps = 7/133 (5%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IY+D++A+ KL+++EPE+  L  WL A+        TS L  VE  R + R   P  + 
Sbjct  1    MIYLDSAAVVKLVVAEPESAALVDWLNARDDLPR--FTSALAEVEVARAI-RRAAPEASG  57

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQI----KRELTAFVTYDH  116
            R   +LD +  L +   V  +A       LRSLDAIHLA A ++      +L AFVTYD 
Sbjct  58   RVPRVLDRMYRLEIDGRVRNVAAAFDDPLLRSLDAIHLATALRLVDANDTQLEAFVTYDK  117

Query  117  RLLSGCREVGFVT  129
            RLL   R     T
Sbjct  118  RLLEAARRADLPT  130


>gi|336178809|ref|YP_004584184.1| PilT protein domain-containing protein [Frankia symbiont of Datisca 
glomerata]
 gi|334859789|gb|AEH10263.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=129

 Score = 72.0 bits (175),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 45/118 (39%), Positives = 65/118 (56%), Gaps = 4/118 (3%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IY+D+SAL KL+  E ET  LR+WL  + G      +S L  +E  R + R   P    
Sbjct  1    MIYLDSSALVKLVHPELETRALRSWLATRPGVS---VSSALAVLEVTRAL-RRSDPAALP  56

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRL  118
            R   +L  + ++P+ +PVI  A  +    LRSLDA+HLA A ++      FV+YD RL
Sbjct  57   RVPDVLSRVMLVPVDQPVIVAAAALTDPLLRSLDALHLATALRLDTPSLVFVSYDKRL  114


>gi|284045881|ref|YP_003396221.1| hypothetical protein Cwoe_4432 [Conexibacter woesei DSM 14684]
 gi|283950102|gb|ADB52846.1| conserved hypothetical protein [Conexibacter woesei DSM 14684]
Length=131

 Score = 70.5 bits (171),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 45/133 (34%), Positives = 74/133 (56%), Gaps = 8/133 (6%)

Query  2    IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER  61
            +Y+DTSAL ++++ EP+   +   L       E   +S L R+E  R+  R G    +E 
Sbjct  4    VYLDTSALGRVVLDEPDGDAIGAALAGF----EAVVSSRLLRIELHRLGLRTGI--ASEE  57

Query  62   ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQI--KRELTAFVTYDHRLL  119
                L G+ I+PL + ++  AE + P+++ +LDAIHLA A Q+  +R + + +T+D RL 
Sbjct  58   IEGWLAGVAIVPLDDAILAAAEAVSPSSVATLDAIHLATALQLAAERHIASIMTFDARLA  117

Query  120  SGCREVGFVTASP  132
             G RE G    +P
Sbjct  118  EGAREHGLDVITP  130


>gi|340628364|ref|YP_004746816.1| hypothetical protein MCAN_34091 [Mycobacterium canettii CIPT 
140010059]
 gi|340006554|emb|CCC45740.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=127

 Score = 70.5 bits (171),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 46/131 (36%), Positives = 71/131 (55%), Gaps = 5/131 (3%)

Query  2    IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER  61
            +Y+D+SA+ KL + EPE+  LR +L  +  +     +S L R E MR + R G+  +   
Sbjct  1    MYLDSSAIVKLAVREPESDALRRYLRTRRPR----VSSALARAEVMRALLRQGESARKA-  55

Query  62   ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG  121
             R +L  LD+L +   V+ LA  + P  LR+LDAIHLA A ++  +L    TYD R+   
Sbjct  56   GRRVLASLDLLRIDTRVLDLAGALLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA  115

Query  122  CREVGFVTASP  132
               +G    +P
Sbjct  116  ADALGMAVIAP  126


>gi|86741564|ref|YP_481964.1| PilT protein-like protein [Frankia sp. CcI3]
 gi|86568426|gb|ABD12235.1| PilT protein-like [Frankia sp. CcI3]
Length=129

 Score = 69.3 bits (168),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 45/131 (35%), Positives = 67/131 (52%), Gaps = 4/131 (3%)

Query  3    YMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTERA  62
            Y+D+SAL KL   E  T  LR+WL  + G    A +S L  +E  R + R   P    R 
Sbjct  3    YLDSSALMKLTHPERGTRALRSWLAVRPGV---AVSSALVMLEVTRAL-RRSDPAALPRI  58

Query  63   RYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGC  122
              +L  + ++P+ +P++  A  +    LRSLDA+HLA A ++      FV+YD RL +  
Sbjct  59   PDVLSRITLVPIDQPIMVSAAALTDPLLRSLDALHLATALRLDAPSLVFVSYDKRLSTAA  118

Query  123  REVGFVTASPG  133
             + G   A P 
Sbjct  119  AQEGLTVAVPA  129


>gi|336178692|ref|YP_004584067.1| hypothetical protein FsymDg_2810 [Frankia symbiont of Datisca 
glomerata]
 gi|334859672|gb|AEH10146.1| hypothetical protein FsymDg_2810 [Frankia symbiont of Datisca 
glomerata]
Length=135

 Score = 68.9 bits (167),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 53/138 (39%), Positives = 71/138 (52%), Gaps = 7/138 (5%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IY+D++A+ KL+ +EP T +L  WL A   +     +S L  VE+ R + R   P    
Sbjct  1    MIYLDSAAVIKLVRAEPFTVDLLDWLDAH--RALPLVSSVLVEVEASRALRRCA-PQALG  57

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRE----LTAFVTYDH  116
            R    L  L  L +   V  +A       LRSLDA+HLA A  +  +    L AFVTYD 
Sbjct  58   RLPVTLARLYRLEINATVRAVAAAYDDPQLRSLDAVHLATATVLTDQPGARLEAFVTYDK  117

Query  117  RLLSGCREVGFVTASPGA  134
            RLL+     G  TASPGA
Sbjct  118  RLLAIAARAGLPTASPGA  135


>gi|296169352|ref|ZP_06850977.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895974|gb|EFG75664.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=130

 Score = 68.9 bits (167),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 45/132 (35%), Positives = 68/132 (52%), Gaps = 5/132 (3%)

Query  2    IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER  61
            IY+D+SA+ KL + EPE+  LR +L  +  +     +S L R E MR +   G+      
Sbjct  4    IYLDSSAIVKLAVREPESDALRRYLRTRLPR----VSSALARTEVMRALLHKGE-SARRA  58

Query  62   ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG  121
             R  L  LD+L +   ++ LA  + P  LR+LDAIHLA A ++  +L    TYD R+   
Sbjct  59   GRRALASLDLLRIDNRLLDLAGGLLPIELRTLDAIHLATAQRLGMDLGRLCTYDDRMRDA  118

Query  122  CREVGFVTASPG  133
               +G    +P 
Sbjct  119  AEALGMAVIAPS  130


>gi|302864894|ref|YP_003833531.1| hypothetical protein Micau_0388 [Micromonospora aurantiaca ATCC 
27029]
 gi|302567753|gb|ADL43955.1| hypothetical protein Micau_0388 [Micromonospora aurantiaca ATCC 
27029]
Length=136

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 50/137 (37%), Positives = 68/137 (50%), Gaps = 7/137 (5%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IY+D++A+ K+L  E ET +L  WL  ++G      +S L  VE  R + R   P    
Sbjct  1    MIYLDSAAVIKMLRREAETADLLGWLNERAGTA--LVSSALAEVEVPRAL-RRAAPQALV  57

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKR----ELTAFVTYDH  116
                +L  L  + +   V   A       LRSLDA+HLA A  + R    E  AFVTYD 
Sbjct  58   GVPSVLGRLYRVEIDATVRATAGAYPEPMLRSLDAVHLATAEILARQAAAEFVAFVTYDK  117

Query  117  RLLSGCREVGFVTASPG  133
            RLL   + +G   ASPG
Sbjct  118  RLLEAAKAIGLPVASPG  134


>gi|256372388|ref|YP_003110212.1| PilT protein domain-containing protein [Acidimicrobium ferrooxidans 
DSM 10331]
 gi|256008972|gb|ACU54539.1| PilT protein domain protein [Acidimicrobium ferrooxidans DSM 
10331]
Length=130

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 50/132 (38%), Positives = 72/132 (55%), Gaps = 4/132 (3%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            V Y+DTSA  KL+++EP +  + +W  +   Q      S L R E +R   R   P + +
Sbjct  2    VFYLDTSAAAKLVVAEPASEAMASWAASHETQ---VIASDLLRTELLRAT-RRAAPDRMQ  57

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS  120
            RAR +LD L +  LT   +  A T+ P  LRSLDA+HLAAA ++  EL   VTYD+R+ +
Sbjct  58   RARSVLDALTLFNLTSATLERAATLDPEELRSLDALHLAAALELGDELDGIVTYDNRMAA  117

Query  121  GCREVGFVTASP  132
               + G     P
Sbjct  118  AASQYGVAVIVP  129


>gi|315501180|ref|YP_004080067.1| hypothetical protein ML5_0364 [Micromonospora sp. L5]
 gi|315407799|gb|ADU05916.1| hypothetical protein ML5_0364 [Micromonospora sp. L5]
Length=136

 Score = 67.0 bits (162),  Expect = 8e-10, Method: Compositional matrix adjust.
 Identities = 50/137 (37%), Positives = 68/137 (50%), Gaps = 7/137 (5%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IY+D++A+ K+L  E ET +L  WL  ++G      +S L  VE  R + R   P    
Sbjct  1    MIYLDSAAVIKMLRREAETADLLGWLNERAGTA--LVSSALVEVEVPRAL-RRAAPQALV  57

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKR----ELTAFVTYDH  116
                +L  L  + +   V   A       LRSLDA+HLA A  + R    E  AFVTYD 
Sbjct  58   GVPSVLGRLYRVEIDATVRATAGAYPEPMLRSLDAVHLATAEILARQAAAEFVAFVTYDE  117

Query  117  RLLSGCREVGFVTASPG  133
            RLL   + +G   ASPG
Sbjct  118  RLLEAAKAIGLPVASPG  134


>gi|284029011|ref|YP_003378942.1| hypothetical protein Kfla_1038 [Kribbella flavida DSM 17836]
 gi|283808304|gb|ADB30143.1| hypothetical protein Kfla_1038 [Kribbella flavida DSM 17836]
Length=134

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 50/141 (36%), Positives = 66/141 (47%), Gaps = 15/141 (10%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQP----  56
            +IY+D  AL K +  E E+  LR W  A     E   TS L ++E  R + R G      
Sbjct  1    MIYLDACALLKFIKPEKESAALRKWREALPPDTE-LLTSELAKLEITRTLLRAGVDHQQV  59

Query  57   ----GQTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFV  112
                GQ  R  Y++D      L+  V+  A     A L SLDAIHLA+A   + +L  FV
Sbjct  60   PYFTGQAVRGIYVVD------LSSTVLARAMAYRTARLGSLDAIHLASAEPFRADLEQFV  113

Query  113  TYDHRLLSGCREVGFVTASPG  133
            TYD  L     E+GF   +P 
Sbjct  114  TYDKELSGAAAELGFPVLAPA  134


>gi|229821860|ref|YP_002883386.1| twitching mobility protein PilT [Beutenbergia cavernae DSM 12333]
 gi|229567773|gb|ACQ81624.1| PilT protein domain protein [Beutenbergia cavernae DSM 12333]
Length=131

 Score = 65.5 bits (158),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 52/131 (40%), Positives = 69/131 (53%), Gaps = 5/131 (3%)

Query  3    YMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTERA  62
            Y+DTSA  KL+  E E+  L  +L  ++    +A TS +G VE +RV AR G P Q  RA
Sbjct  5    YLDTSASAKLIAVEAESAALADYL--RASPDAEAVTSVVGIVELLRVGARLG-PAQRLRA  61

Query  63   RYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGC  122
              L   L  + LTE +   A    PA LR+LDAIH+A+A     E  + V+YD RL    
Sbjct  62   VDLAARLGTIALTESIARAAADAAPANLRTLDAIHVASAVVAGAE--SVVSYDARLSEAA  119

Query  123  REVGFVTASPG  133
               G    +PG
Sbjct  120  VAAGLRVVAPG  130


>gi|306818894|ref|ZP_07452615.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304648296|gb|EFM45600.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
Length=97

 Score = 63.5 bits (153),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 38/86 (45%), Positives = 50/86 (59%), Gaps = 1/86 (1%)

Query  48   RVVARYGQPGQTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRE  107
            RV  R G   Q  +AR +LD L+++ ++  +  LA  + P  LRSLDAIHLA A Q+  +
Sbjct  10   RVTGRLG-VAQRGQARAILDALNLVRISSQICDLAGLLEPTVLRSLDAIHLATALQVGDD  68

Query  108  LTAFVTYDHRLLSGCREVGFVTASPG  133
            L A VTYD RL    + VG    SPG
Sbjct  69   LEALVTYDLRLGVAAQMVGIPLLSPG  94


>gi|325067177|ref|ZP_08125850.1| PilT protein domain-containing protein [Actinomyces oris K20]
Length=131

 Score = 63.5 bits (153),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 47/135 (35%), Positives = 68/135 (51%), Gaps = 8/135 (5%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            V Y+DTSA  KLLI E E+  L  WLT+ +  G+   +S L   E      R G+  Q E
Sbjct  3    VYYLDTSAALKLLIEEKESEPLAAWLTSHTTDGDSLCSSFLLHTELHCAARRRGELNQ-E  61

Query  61   RARYLLDGLDILPLTEPVIGLAE--TIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRL  118
                LL G+D++ ++   +  A   ++G   LR+ DAIHL AA  I+ +  A VTYD  +
Sbjct  62   AVASLLSGIDLIDVSRSHLTDAARTSMG---LRAADAIHLTAALDIQAD--AIVTYDIEM  116

Query  119  LSGCREVGFVTASPG  133
             +  R       +P 
Sbjct  117  QNAARYCNLSPVAPS  131


>gi|108802491|ref|YP_642687.1| hypothetical protein Mmcs_5531 [Mycobacterium sp. MCS]
 gi|119855319|ref|YP_935922.1| hypothetical protein Mkms_5933 [Mycobacterium sp. KMS]
 gi|108772910|gb|ABG11631.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119698036|gb|ABL95107.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=133

 Score = 62.8 bits (151),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 44/134 (33%), Positives = 68/134 (51%), Gaps = 5/134 (3%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQ-T  59
            +IY+D +A+ KL+   PE+  L T+L A +       T  L R++ +R  A    P + T
Sbjct  1    MIYLDATAIMKLIAQAPESAALTTYLRAHTDTRW--FTCALSRLDVVRATA--ALPAEAT  56

Query  60   ERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLL  119
            E A  +L GLD + +T+ ++  A  + PA  R+ DA+H+AAA      L   +TYD  L 
Sbjct  57   EHAHRILAGLDTVAVTDRLLDAAVALTPAPARTTDALHIAAALSAGPRLRTLITYDPDLS  116

Query  120  SGCREVGFVTASPG  133
                +    T  PG
Sbjct  117  RAAADHHINTVHPG  130


>gi|307701081|ref|ZP_07638106.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris FB024-16]
 gi|307614076|gb|EFN93320.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris FB024-16]
Length=87

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 34/76 (45%), Positives = 46/76 (61%), Gaps = 0/76 (0%)

Query  58   QTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHR  117
            Q  +AR +LD L+++ ++  +  LA  + P  LRSLDAIHLA A Q+  +L A VTYD R
Sbjct  9    QRGQARAILDALNLVRISSQICDLAGLLEPTVLRSLDAIHLATALQVGDDLEALVTYDLR  68

Query  118  LLSGCREVGFVTASPG  133
            L    + VG    SPG
Sbjct  69   LGVAAQMVGIPLLSPG  84


>gi|296169436|ref|ZP_06851057.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895905|gb|EFG75599.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=135

 Score = 61.6 bits (148),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 50/135 (38%), Positives = 63/135 (47%), Gaps = 5/135 (3%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IY+DTSAL KL+  E E+  L  WL  ++       TS L  VE  R + R   P    
Sbjct  1    MIYLDTSALVKLIRIEVESDALADWLDERTETRW--ITSALAEVELPRAI-RAVAPNGLS  57

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAA--AQIKRELTAFVTYDHRL  118
                +L  LD   + + +   A       LRSLDAIHLA A  A     LTA V YD RL
Sbjct  58   AVPSVLARLDRFEIDQVIRATAAAYPDPALRSLDAIHLATAQIAASTAPLTAMVAYDSRL  117

Query  119  LSGCREVGFVTASPG  133
                R +G    +PG
Sbjct  118  SDAARALGITIVTPG  132


>gi|182435669|ref|YP_001823388.1| hypothetical protein SGR_1876 [Streptomyces griseus subsp. griseus 
NBRC 13350]
 gi|178464185|dbj|BAG18705.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 
13350]
Length=144

 Score = 61.6 bits (148),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 50/145 (35%), Positives = 70/145 (49%), Gaps = 15/145 (10%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVV--ARYGQPGQ  58
            +IY+D+ AL KL+  E +T  L  +L  +  Q +   TS L   E MRV+  AR G  GQ
Sbjct  1    MIYLDSCALVKLIKREKDTDALVAFLEERPQQRQ--VTSDLAVTEIMRVIRRARCGPQGQ  58

Query  59   T-----------ERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRE  107
                        E A   L+  D++ L   ++  A  +    ++SLDAIHLA+A  +   
Sbjct  59   LLIDDLTFTRLLEAAEKRLNATDLVTLDLALLEEAGALEEFNIKSLDAIHLASALMLGPS  118

Query  108  LTAFVTYDHRLLSGCREVGFVTASP  132
            LT+FVTYD  L       G    SP
Sbjct  119  LTSFVTYDGGLRGHAENRGLPVFSP  143


>gi|227875583|ref|ZP_03993723.1| hypothetical protein HMPREF0577_1024 [Mobiluncus mulieris ATCC 
35243]
 gi|227843919|gb|EEJ54088.1| hypothetical protein HMPREF0577_1024 [Mobiluncus mulieris ATCC 
35243]
Length=97

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 40/93 (44%), Positives = 52/93 (56%), Gaps = 6/93 (6%)

Query  41   LGRVESMRVVARYGQPGQTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAA  100
            L RV     VA+ GQ      AR +LD L+++ ++  +  LA  + PA LRSLDAIHLA 
Sbjct  8    LARVTGRLDVAQRGQ------ARAILDALNLVRISSQICDLAGLLEPAVLRSLDAIHLAT  61

Query  101  AAQIKRELTAFVTYDHRLLSGCREVGFVTASPG  133
            A Q+  +L A VTYD RL    +  G    SPG
Sbjct  62   ALQVGDDLEALVTYDLRLGVAAQMGGIPLLSPG  94


>gi|284029018|ref|YP_003378949.1| hypothetical protein Kfla_1046 [Kribbella flavida DSM 17836]
 gi|283808311|gb|ADB30150.1| conserved hypothetical protein [Kribbella flavida DSM 17836]
Length=131

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 47/133 (36%), Positives = 65/133 (49%), Gaps = 4/133 (3%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            +IY+ T+AL KL+  E  +  L  WL  +        +S L  +E  R + R  +P    
Sbjct  1    MIYLATAALVKLVRREVPSDALTDWLNDRMDLP--LVSSALAEIELPRAL-RRTEPALLA  57

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAA-AQIKRELTAFVTYDHRLL  119
                +L  L +  + E V   A       +R LDAIHLA A A +  +LTAFVTYD RLL
Sbjct  58   AVPAVLSRLAVYEIDEQVRATAAAYADPLIRPLDAIHLATAHAVLADDLTAFVTYDRRLL  117

Query  120  SGCREVGFVTASP  132
            +    +G  TA P
Sbjct  118  ASAETLGLPTACP  130


>gi|269977174|ref|ZP_06184147.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris 28-1]
 gi|269934477|gb|EEZ91038.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris 28-1]
Length=87

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 34/76 (45%), Positives = 46/76 (61%), Gaps = 0/76 (0%)

Query  58   QTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHR  117
            Q  +AR +LD L+++ ++  +  LA  + PA LRSLDAIHLA A Q+  +L A VTYD R
Sbjct  9    QRGQARAILDALNLVRISSQICDLAGLLEPAVLRSLDAIHLATALQVGDDLEALVTYDLR  68

Query  118  LLSGCREVGFVTASPG  133
            L    +  G    SPG
Sbjct  69   LGVAAQMGGIPLLSPG  84


>gi|326771646|ref|ZP_08230931.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces 
viscosus C505]
 gi|326637779|gb|EGE38680.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces 
viscosus C505]
Length=131

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 45/135 (34%), Positives = 67/135 (50%), Gaps = 8/135 (5%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            V Y+DTSA  KLLI E E+  L  WLT+ +  G+   +S L   E +   AR       E
Sbjct  3    VYYLDTSAALKLLIEEKESEPLAAWLTSHTTDGDSLCSSFLLHTE-LHCAARRRSELDQE  61

Query  61   RARYLLDGLDILPLTEP-VIGLAET-IGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRL  118
                LL G++++ ++   +I  A T +G   LR+ DAIHL  A  I+ +  A +TYD  +
Sbjct  62   TVASLLSGINLIDISRSQLIDAARTSLG---LRAADAIHLTVALDIRAD--AIITYDIEM  116

Query  119  LSGCREVGFVTASPG  133
             +  R       +P 
Sbjct  117  QNAARSCNLSPVAPS  131


>gi|312198893|ref|YP_004018954.1| PilT protein domain protein [Frankia sp. EuI1c]
 gi|311230229|gb|ADP83084.1| PilT protein domain protein [Frankia sp. EuI1c]
Length=146

 Score = 57.4 bits (137),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 43/144 (30%), Positives = 69/144 (48%), Gaps = 16/144 (11%)

Query  1    VIYMDTSALTKLLISEP-ETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQT  59
            + Y DTSA   LL+ EP   T +R W  A     +   +S L  VE+   +A+  + G+ 
Sbjct  2    ICYFDTSAFVPLLVDEPGSATAIRIWDAA-----DRVVSSRLLHVEAAAALAQANRLGKL  56

Query  60   E---------RARYLLDGLDILPLTEPVIGLAETIG-PATLRSLDAIHLAAAAQIKRELT  109
                      R   +    D+LP+T+ ++  A T+     LR+ DA+H AAA  +  +  
Sbjct  57   SGSAHQAALLRLNDIYAEFDLLPITDGLVSRAATLARQLALRAFDAMHCAAAQLLASDDL  116

Query  110  AFVTYDHRLLSGCREVGFVTASPG  133
               + D +LL+ CR +G  TA+ G
Sbjct  117  VVASGDRKLLAACRTLGLATANTG  140


>gi|15609099|ref|NP_216478.1| hypothetical protein Rv1962c [Mycobacterium tuberculosis H37Rv]
 gi|15841433|ref|NP_336470.1| hypothetical protein MT2012 [Mycobacterium tuberculosis CDC1551]
 gi|31793154|ref|NP_855647.1| hypothetical protein Mb1997c [Mycobacterium bovis AF2122/97]
 81 more sequence titles
 Length=135

 Score = 55.1 bits (131),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 50/141 (36%), Positives = 66/141 (47%), Gaps = 11/141 (7%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVE---SMRVVARYGQPG  57
            +IY++TSAL KL+  E E+  L  WL  ++       TS L  VE   ++R V+  G P 
Sbjct  1    MIYLETSALVKLIRIEVESDALADWLDDRTELRW--ITSALTEVELSRAIRAVSPEGLPA  58

Query  58   QTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAA--AQIKRELTAFVTYD  115
                   +L  LD   +   +   A       LRSLDAIHLA A  A     LTA VTYD
Sbjct  59   VPS----VLARLDRFEIDAVIRSTAAAYPNPALRSLDAIHLATAQTAGSVAPLTALVTYD  114

Query  116  HRLLSGCREVGFVTASPGAVR  136
            +RL      +     +PG  R
Sbjct  115  NRLKEAAEALSLAVVAPGQAR  135


>gi|340358514|ref|ZP_08681031.1| PilT domain protein [Actinomyces sp. oral taxon 448 str. F0400]
 gi|339886364|gb|EGQ76022.1| PilT domain protein [Actinomyces sp. oral taxon 448 str. F0400]
Length=137

 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 42/138 (31%), Positives = 61/138 (45%), Gaps = 8/138 (5%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAA-----TSTLGRVESMRVVARYGQ  55
            + Y+DTSA  KLLI E E+  L  WL        D+A      S+      +   AR  +
Sbjct  3    IYYLDTSAALKLLIEEDESEPLAQWLNQTVSHSPDSAGDIALCSSFLLSTELHCAARRRR  62

Query  56   PGQTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYD  115
                E    LL G++++ ++   + L      A LRS DAIHL  A  I+ +  A +TYD
Sbjct  63   ELDEEAVATLLSGVELVDVSREHL-LNAAGDSAGLRSADAIHLTVALDIRSD--ALLTYD  119

Query  116  HRLLSGCREVGFVTASPG  133
              +    R  G    +P 
Sbjct  120  REMRIAARRRGLGVVAPA  137


>gi|320108976|ref|YP_004184566.1| hypothetical protein AciPR4_3823 [Terriglobus saanensis SP1PR4]
 gi|319927497|gb|ADV84572.1| hypothetical protein AciPR4_3823 [Terriglobus saanensis SP1PR4]
Length=148

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 47/145 (33%), Positives = 67/145 (47%), Gaps = 18/145 (12%)

Query  3    YMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQ-----PG  57
            ++DTSAL KL I+E  T E+  +  A+  + +    S L ++E+   + R  Q     P 
Sbjct  4    FIDTSALVKLFIAEQGTNEMLRFANAEDDRNK--VISALAQIEARSAICRLRQGNFIDPA  61

Query  58   QTERA-RYLLDGLDIL---PLTEPVIGLAET-IGPATLRSLDAIHLAAAAQIKRELTA--  110
            +T  A   L D +  +   PL  PVI  A T I    LR+LDA  L +A  + R+L    
Sbjct  62   ETALALNSLADEIRRVIEQPLNPPVIEAASTVIDRYYLRALDAAQLGSAI-VARDLLGAS  120

Query  111  ---FVTYDHRLLSGCREVGFVTASP  132
               F+  D  LL    E GF    P
Sbjct  121  DMRFIASDKALLEAAHEEGFDVWDP  145


>gi|145223797|ref|YP_001134475.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145216283|gb|ABP45687.1| PilT protein domain protein [Mycobacterium gilvum PYR-GCK]
Length=235

 Score = 47.4 bits (111),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 39/139 (29%), Positives = 65/139 (47%), Gaps = 16/139 (11%)

Query  1    VIYMDTSALTKLLISEPETTELRT-WLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQT  59
            + Y+DTSA   LLI EP +   R  W  A +       +S L  VE+   +A+ G+ G+ 
Sbjct  89   IGYLDTSAFVPLLIDEPASVACRRFWDDADA-----IVSSRLLYVETAAALAQAGRIGRL  143

Query  60   ERARYL---------LDGLDILPLTEPVIGLAETIGPA-TLRSLDAIHLAAAAQIKRELT  109
                +L            +D++ + E ++  A  +    +LR  DA+H A+A Q+  +  
Sbjct  144  TEGEHLQARRRLGQMWSEMDVIEVDEQIVTRAADLAHRLSLRGYDAVHAASAEQLDDDDV  203

Query  110  AFVTYDHRLLSGCREVGFV  128
            A  + D RLLS   ++G  
Sbjct  204  AAASGDQRLLSAWMDLGMA  222


>gi|269795913|ref|YP_003315368.1| hypothetical protein Sked_26300 [Sanguibacter keddieii DSM 10542]
 gi|269098098|gb|ACZ22534.1| hypothetical protein Sked_26300 [Sanguibacter keddieii DSM 10542]
Length=133

 Score = 47.4 bits (111),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 38/132 (29%), Positives = 65/132 (50%), Gaps = 7/132 (5%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            ++Y+D+S   + ++  PE   L+ W+      G    +S L R E +RV+ R G+P    
Sbjct  5    IVYLDSSVGLRTILDVPERLRLQEWMQT---PGMSLVSSRLLRTEVVRVLRRDGRP--LS  59

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS  120
             A  LLD +  + LT     +AE+I    +++LDA+HLA A  +  EL    ++D  +  
Sbjct  60   DAAPLLDRVGTIDLTRETHSVAESI-ERHIKTLDALHLATALLVG-ELVMVASHDATMKR  117

Query  121  GCREVGFVTASP  132
               ++G     P
Sbjct  118  VAEQLGLSVTDP  129


>gi|336115824|ref|YP_004570590.1| hypothetical protein MLP_01730 [Microlunatus phosphovorus NM-1]
 gi|334683602|dbj|BAK33187.1| hypothetical protein MLP_01730 [Microlunatus phosphovorus NM-1]
Length=139

 Score = 47.0 bits (110),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 39/134 (30%), Positives = 66/134 (50%), Gaps = 5/134 (3%)

Query  1    VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE  60
            + Y+D+S   ++L++   + E   W   ++  G+  A+S L  +E  RV  R       E
Sbjct  11   IWYLDSSVALRVLLAH--SVEAAEWFDERAFAGDAFASSRLLELELTRVF-RRESLDVVE  67

Query  61   RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS  120
             A ++ + L +L + + ++  A  I P  LRSLDA+HLA A +I  +    VT+D  +  
Sbjct  68   VADFVAE-LTLLTVDDALVAEAAAIVP-HLRSLDALHLAGAQRIGVDAVTIVTHDLGMAK  125

Query  121  GCREVGFVTASPGA  134
                +GF    P A
Sbjct  126  TAESLGFAVHDPVA  139


>gi|124516076|gb|EAY57585.1| conserved hypothetical protein [Leptospirillum rubarum]
 gi|206603762|gb|EDZ40242.1| Conserved protein of unknown function [Leptospirillum sp. Group 
II '5-way CG']
Length=156

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 35/143 (25%), Positives = 64/143 (45%), Gaps = 24/143 (16%)

Query  2    IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER  61
            +Y+D+SA+ K  + EP    +R W    +   +  ATS +   E   VV+ + Q  ++E 
Sbjct  5    LYLDSSAIVKFYVHEPHYQNVRQW----AESADILATSEIAYTE---VVSAFSQKVRSEE  57

Query  62   ARY-----LLDGLDILPL-------TEPVIGLAETIGPAT-LRSLDAIHLAAAAQIKREL  108
              +     +L  L+ L          +P+      + P   LR++D++HL AA   + ++
Sbjct  58   IGWDYVSQVLPKLNQLWFGRLAVVRIDPLEAAQYVLSPTFPLRAMDSVHLHAAIAFRSQM  117

Query  109  ----TAFVTYDHRLLSGCREVGF  127
                  F ++D RL+      GF
Sbjct  118  PEYSVMFCSFDRRLIQAANTYGF  140



Lambda     K      H
   0.318    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128858389450


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40