BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3408
Length=136
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610544|ref|NP_217925.1| hypothetical protein Rv3408 [Mycoba... 270 3e-71
gi|31794589|ref|NP_857082.1| hypothetical protein Mb3442 [Mycoba... 268 3e-70
gi|15843003|ref|NP_338040.1| hypothetical protein MT3516 [Mycoba... 262 1e-68
gi|240170730|ref|ZP_04749389.1| hypothetical protein MkanA1_1555... 223 5e-57
gi|326382371|ref|ZP_08204063.1| toxin [Gordonia neofelifaecis NR... 139 1e-31
gi|284989378|ref|YP_003407932.1| PilT protein domain-containing ... 100 6e-20
gi|120402717|ref|YP_952546.1| PilT domain-containing protein [My... 94.7 3e-18
gi|334337553|ref|YP_004542705.1| PilT protein domain protein [Is... 90.9 6e-17
gi|296166224|ref|ZP_06848663.1| PIN family toxin-antitoxin syste... 90.1 9e-17
gi|336176937|ref|YP_004582312.1| hypothetical protein FsymDg_088... 88.6 2e-16
gi|269978026|ref|ZP_06184976.1| toxin-antitoxin system, toxin co... 88.6 3e-16
gi|307700859|ref|ZP_07637884.1| toxin-antitoxin system, toxin co... 88.6 3e-16
gi|284044421|ref|YP_003394761.1| hypothetical protein Cwoe_2967 ... 88.2 4e-16
gi|111220042|ref|YP_710836.1| hypothetical protein FRAAL0552 [Fr... 82.8 1e-14
gi|336179976|ref|YP_004585351.1| PilT protein domain-containing ... 81.6 4e-14
gi|336178644|ref|YP_004584019.1| PilT protein domain-containing ... 79.0 2e-13
gi|15842977|ref|NP_338014.1| hypothetical protein MT3492 [Mycoba... 75.9 2e-12
gi|15610520|ref|NP_217901.1| hypothetical protein Rv3384c [Mycob... 75.9 2e-12
gi|300790923|ref|YP_003771214.1| hypothetical protein AMED_9123 ... 75.1 3e-12
gi|336177878|ref|YP_004583253.1| hypothetical protein FsymDg_189... 75.1 3e-12
gi|288917440|ref|ZP_06411806.1| hypothetical protein FrEUN1fDRAF... 74.3 6e-12
gi|336178809|ref|YP_004584184.1| PilT protein domain-containing ... 72.0 3e-11
gi|284045881|ref|YP_003396221.1| hypothetical protein Cwoe_4432 ... 70.5 8e-11
gi|340628364|ref|YP_004746816.1| hypothetical protein MCAN_34091... 70.5 8e-11
gi|86741564|ref|YP_481964.1| PilT protein-like protein [Frankia ... 69.3 2e-10
gi|336178692|ref|YP_004584067.1| hypothetical protein FsymDg_281... 68.9 2e-10
gi|296169352|ref|ZP_06850977.1| PIN family toxin-antitoxin syste... 68.9 3e-10
gi|302864894|ref|YP_003833531.1| hypothetical protein Micau_0388... 68.6 3e-10
gi|256372388|ref|YP_003110212.1| PilT protein domain-containing ... 67.8 5e-10
gi|315501180|ref|YP_004080067.1| hypothetical protein ML5_0364 [... 67.0 8e-10
gi|284029011|ref|YP_003378942.1| hypothetical protein Kfla_1038 ... 66.2 1e-09
gi|229821860|ref|YP_002883386.1| twitching mobility protein PilT... 65.5 2e-09
gi|306818894|ref|ZP_07452615.1| conserved hypothetical protein [... 63.5 9e-09
gi|325067177|ref|ZP_08125850.1| PilT protein domain-containing p... 63.5 1e-08
gi|108802491|ref|YP_642687.1| hypothetical protein Mmcs_5531 [My... 62.8 1e-08
gi|307701081|ref|ZP_07638106.1| toxin-antitoxin system, toxin co... 62.0 3e-08
gi|296169436|ref|ZP_06851057.1| PIN family toxin-antitoxin syste... 61.6 4e-08
gi|182435669|ref|YP_001823388.1| hypothetical protein SGR_1876 [... 61.6 4e-08
gi|227875583|ref|ZP_03993723.1| hypothetical protein HMPREF0577_... 60.8 6e-08
gi|284029018|ref|YP_003378949.1| hypothetical protein Kfla_1046 ... 60.5 8e-08
gi|269977174|ref|ZP_06184147.1| toxin-antitoxin system, toxin co... 60.5 8e-08
gi|326771646|ref|ZP_08230931.1| toxin-antitoxin system, toxin co... 60.5 8e-08
gi|312198893|ref|YP_004018954.1| PilT protein domain protein [Fr... 57.4 6e-07
gi|15609099|ref|NP_216478.1| hypothetical protein Rv1962c [Mycob... 55.1 4e-06
gi|340358514|ref|ZP_08681031.1| PilT domain protein [Actinomyces... 51.6 3e-05
gi|320108976|ref|YP_004184566.1| hypothetical protein AciPR4_382... 49.7 2e-04
gi|145223797|ref|YP_001134475.1| PilT domain-containing protein ... 47.4 7e-04
gi|269795913|ref|YP_003315368.1| hypothetical protein Sked_26300... 47.4 7e-04
gi|336115824|ref|YP_004570590.1| hypothetical protein MLP_01730 ... 47.0 9e-04
gi|124516076|gb|EAY57585.1| conserved hypothetical protein [Lept... 46.6 0.001
>gi|15610544|ref|NP_217925.1| hypothetical protein Rv3408 [Mycobacterium tuberculosis H37Rv]
gi|148663272|ref|YP_001284795.1| hypothetical protein MRA_3448 [Mycobacterium tuberculosis H37Ra]
gi|167968706|ref|ZP_02550983.1| hypothetical protein MtubH3_11975 [Mycobacterium tuberculosis
H37Ra]
gi|307086187|ref|ZP_07495300.1| toxin [Mycobacterium tuberculosis SUMu012]
gi|332278240|sp|Q50717.3|VPC47_MYCTU RecName: Full=Probable ribonuclease VapC47; Short=Probable RNase
VapC47; AltName: Full=Toxin VapC47
gi|1449379|emb|CAB01015.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|148507424|gb|ABQ75233.1| hypothetical protein MRA_3448 [Mycobacterium tuberculosis H37Ra]
gi|308364354|gb|EFP53205.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=136
Score = 270 bits (691), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 135/136 (99%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE
Sbjct 1 MIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS 120
RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS
Sbjct 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS 120
Query 121 GCREVGFVTASPGAVR 136
GCREVGFVTASPGAVR
Sbjct 121 GCREVGFVTASPGAVR 136
>gi|31794589|ref|NP_857082.1| hypothetical protein Mb3442 [Mycobacterium bovis AF2122/97]
gi|121639333|ref|YP_979557.1| hypothetical protein BCG_3478 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148824615|ref|YP_001289369.1| hypothetical protein TBFG_13442 [Mycobacterium tuberculosis F11]
67 more sequence titles
Length=136
Score = 268 bits (684), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 134/136 (99%), Positives = 135/136 (99%), Gaps = 0/136 (0%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVE MRVVARYGQPGQTE
Sbjct 1 MIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVELMRVVARYGQPGQTE 60
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS 120
RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS
Sbjct 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS 120
Query 121 GCREVGFVTASPGAVR 136
GCREVGFVTASPGAVR
Sbjct 121 GCREVGFVTASPGAVR 136
>gi|15843003|ref|NP_338040.1| hypothetical protein MT3516 [Mycobacterium tuberculosis CDC1551]
gi|308378313|ref|ZP_07668719.1| toxin [Mycobacterium tuberculosis SUMu009]
gi|308380689|ref|ZP_07669253.1| toxin [Mycobacterium tuberculosis SUMu011]
gi|13883344|gb|AAK47854.1| hypothetical protein MT3516 [Mycobacterium tuberculosis CDC1551]
gi|308352931|gb|EFP41782.1| toxin [Mycobacterium tuberculosis SUMu009]
gi|308360743|gb|EFP49594.1| toxin [Mycobacterium tuberculosis SUMu011]
Length=133
Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 132/133 (99%), Positives = 132/133 (99%), Gaps = 0/133 (0%)
Query 4 MDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTERAR 63
MDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVE MRVVARYGQPGQTERAR
Sbjct 1 MDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVELMRVVARYGQPGQTERAR 60
Query 64 YLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGCR 123
YLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGCR
Sbjct 61 YLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGCR 120
Query 124 EVGFVTASPGAVR 136
EVGFVTASPGAVR
Sbjct 121 EVGFVTASPGAVR 133
>gi|240170730|ref|ZP_04749389.1| hypothetical protein MkanA1_15552 [Mycobacterium kansasii ATCC
12478]
Length=136
Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/136 (83%), Positives = 119/136 (88%), Gaps = 0/136 (0%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IY+DTSALTKLLI+EPET ELR WLT + QGE AATS L RVE MRVVAR G+ GQ E
Sbjct 1 MIYLDTSALTKLLIAEPETDELRNWLTVHTDQGEFAATSALSRVELMRVVARQGESGQAE 60
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS 120
RARYLLDGLDILPLT PVI LAETIGPATLR+LDAIHLAAA QIKRELTAFVTYDHRLL+
Sbjct 61 RARYLLDGLDILPLTAPVINLAETIGPATLRTLDAIHLAAATQIKRELTAFVTYDHRLLA 120
Query 121 GCREVGFVTASPGAVR 136
GC EVG VTASPGAVR
Sbjct 121 GCLEVGLVTASPGAVR 136
>gi|326382371|ref|ZP_08204063.1| toxin [Gordonia neofelifaecis NRRL B-59395]
gi|326199101|gb|EGD56283.1| toxin [Gordonia neofelifaecis NRRL B-59395]
Length=142
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/133 (52%), Positives = 91/133 (69%), Gaps = 0/133 (0%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IY+DTSAL KLL++E E+ +L +WL Q GE+ + L RVE MR VAR +PG +
Sbjct 1 MIYLDTSALVKLLVAEAESADLVSWLDTQVNSGENLVSGDLARVEVMRTVARLDEPGLLD 60
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS 120
AR +LDGLD +P +E V+ A IGP+TLRS+DAIHLAAA+Q+ LTAFV YD RL
Sbjct 61 DARMMLDGLDSIPTSETVVDEATVIGPSTLRSVDAIHLAAASQLGSALTAFVAYDVRLHD 120
Query 121 GCREVGFVTASPG 133
E+G ++PG
Sbjct 121 AAAELGLPASAPG 133
>gi|284989378|ref|YP_003407932.1| PilT protein domain-containing protein [Geodermatophilus obscurus
DSM 43160]
gi|284062623|gb|ADB73561.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=130
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/133 (43%), Positives = 79/133 (60%), Gaps = 3/133 (2%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+I +D+SAL KL++ EPE+ L WLT+++ A S L RVE +R VAR P
Sbjct 1 MIAIDSSALVKLVLDEPESAALEGWLTSRAPLS--VAASDLVRVELIRAVAR-AAPAGVP 57
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS 120
RAR LL G+D++P+T ++ A +GP +LRSLDA+HLA A + L AFV YD RL
Sbjct 58 RARTLLTGVDLVPVTRDLLETAADLGPPSLRSLDALHLATALSLGSALDAFVVYDERLAQ 117
Query 121 GCREVGFVTASPG 133
+ G +P
Sbjct 118 AATDAGLPVVAPS 130
>gi|120402717|ref|YP_952546.1| PilT domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119955535|gb|ABM12540.1| PilT protein domain protein [Mycobacterium vanbaalenii PYR-1]
Length=134
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/135 (46%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IY+DTSA+ KL+++EPE+ EL WL + + TS +GRVE R A
Sbjct 1 MIYLDTSAMVKLVVAEPESEELIDWLNERLTH-DPIVTSIIGRVELHRA-ALRAGAEAMA 58
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRE-LTAFVTYDHRLL 119
AR +LDG+D L LTEP+ LA T+ PA LR+LDA+HL A A+I RE LTA YD RL+
Sbjct 59 AAREVLDGVDTLVLTEPIAALAGTMVPAELRTLDALHL-ATAEIHREGLTAICAYDRRLV 117
Query 120 SGCREVGFVTASPGA 134
R +PGA
Sbjct 118 DAARARKLPVVAPGA 132
>gi|334337553|ref|YP_004542705.1| PilT protein domain protein [Isoptericola variabilis 225]
gi|334107921|gb|AEG44811.1| PilT protein domain protein [Isoptericola variabilis 225]
Length=149
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/132 (41%), Positives = 73/132 (56%), Gaps = 4/132 (3%)
Query 3 YMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTERA 62
Y+DTSAL KL++ EPE+ L+ W+ A + +S L R E +R V R P A
Sbjct 3 YLDTSALVKLVVREPESAALKKWVDANDDR---LVSSDLARTELLRAV-RRAAPEHAVTA 58
Query 63 RYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGC 122
R +LD +D+L LT A + P +RSLDA+HLA A ++ EL + VTYD RL
Sbjct 59 RAVLDAVDLLALTTADFEAAAHLDPDIVRSLDALHLATALRLGDELESMVTYDVRLADAA 118
Query 123 REVGFVTASPGA 134
R G +PG+
Sbjct 119 RYHGVAVTAPGS 130
>gi|296166224|ref|ZP_06848663.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898408|gb|EFG77975.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=131
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/131 (42%), Positives = 80/131 (62%), Gaps = 3/131 (2%)
Query 3 YMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTERA 62
Y+DTSAL KL+++E E+T L+ +L A + + T+ L R E +R V+ G G +A
Sbjct 4 YLDTSALVKLVVAEDESTALQEYLRAVAA--DTLFTAALARTELIRAVSGAG-AGAVSQA 60
Query 63 RYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGC 122
R +LD LD + LT ++ A + PA LR+LDAIHLAAA + +L A VTYD R+ +
Sbjct 61 RRILDQLDTINLTRGLLDAAADLRPARLRTLDAIHLAAAQRAGTDLRAVVTYDTRMAAAA 120
Query 123 REVGFVTASPG 133
++G V +P
Sbjct 121 ADLGIVIEAPA 131
>gi|336176937|ref|YP_004582312.1| hypothetical protein FsymDg_0881 [Frankia symbiont of Datisca
glomerata]
gi|334857917|gb|AEH08391.1| hypothetical protein FsymDg_0881 [Frankia symbiont of Datisca
glomerata]
Length=132
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/134 (40%), Positives = 79/134 (59%), Gaps = 4/134 (2%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARY--GQPGQ 58
+IY+D+ AL KL+++E ET+ LR +L+A +G + TS L R E +R V R
Sbjct 1 MIYLDSCALVKLVVTEAETSALRAFLSAHAGYPQ--VTSLLARTEVVRAVRRATADDADL 58
Query 59 TERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRL 118
+ A +L+ LD + L P++ A + +R+LDAIHLAAA ++ LTAFVTYD RL
Sbjct 59 YKAAVTMLNRLDHIILDRPILDDAGAVADPLVRTLDAIHLAAARRLGDSLTAFVTYDRRL 118
Query 119 LSGCREVGFVTASP 132
+ + GF +P
Sbjct 119 ATAALDFGFPVRAP 132
>gi|269978026|ref|ZP_06184976.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris 28-1]
gi|269933535|gb|EEZ90119.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris 28-1]
Length=133
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/133 (41%), Positives = 74/133 (56%), Gaps = 4/133 (3%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
V Y+DTSAL K L E E+ W+ A + + TS RVE +RV R G + +
Sbjct 2 VFYLDTSALVKALHQEAESEAFAQWMAANA---QHCYTSDFTRVELLRVAGRLGAATRVQ 58
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS 120
AR +LD L+++ ++ + A + PATLRSLDAIHLA A Q+ +L A VTYD RL
Sbjct 59 -ARAVLDALNLVAISPAICDTAGLLEPATLRSLDAIHLATALQLGDDLEALVTYDLRLGQ 117
Query 121 GCREVGFVTASPG 133
+ + SPG
Sbjct 118 AAQMLAIPLLSPG 130
>gi|307700859|ref|ZP_07637884.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris FB024-16]
gi|307613854|gb|EFN93098.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris FB024-16]
Length=133
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/134 (41%), Positives = 74/134 (56%), Gaps = 4/134 (2%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
V Y+DTSAL K L E E+ W+ A + + TS RVE +RV R G + +
Sbjct 2 VFYLDTSALVKALHQEAESEAFAQWMAANA---QHCYTSDFTRVELLRVTGRLGAATRVQ 58
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS 120
AR +LD L+++ ++ + A + PATLRSLDAIHLA A Q+ +L A VTYD RL
Sbjct 59 -ARAVLDALNLVAISPAICDTAGLLEPATLRSLDAIHLATALQLGDDLEALVTYDLRLGQ 117
Query 121 GCREVGFVTASPGA 134
+ + SPG
Sbjct 118 AAQMLAIPLLSPGC 131
>gi|284044421|ref|YP_003394761.1| hypothetical protein Cwoe_2967 [Conexibacter woesei DSM 14684]
gi|283948642|gb|ADB51386.1| conserved hypothetical protein [Conexibacter woesei DSM 14684]
Length=133
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/133 (40%), Positives = 82/133 (62%), Gaps = 5/133 (3%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
V Y+D+SAL KL++ EPE+ L L ++ + + L VE +R V +G P T+
Sbjct 6 VCYLDSSALVKLVVREPESATLTRHLRSRPVR----VSCALATVEVVRAVGAHG-PEATD 60
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS 120
RAR +LDG+D++ L +P++ A T+ LRSLDAIHLAAA ++ + +TYD R+ +
Sbjct 61 RARQVLDGVDMIRLDDPLLHAAATLDGPLLRSLDAIHLAAALALREDEVELITYDRRMAA 120
Query 121 GCREVGFVTASPG 133
++GFV ++P
Sbjct 121 HAEQLGFVVSAPA 133
>gi|111220042|ref|YP_710836.1| hypothetical protein FRAAL0552 [Frankia alni ACN14a]
gi|111147574|emb|CAJ59227.1| hypothetical protein; putative PilT domain [Frankia alni ACN14a]
Length=138
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/133 (38%), Positives = 72/133 (55%), Gaps = 1/133 (0%)
Query 2 IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER 61
IY+DTSAL K+ I+E E+ +LR WL Q Q +S L VE R++
Sbjct 5 IYLDTSALAKMFIAEKESDDLRQWLVEQV-QPLRLVSSALLAVELTRLLGLINPAILGLA 63
Query 62 ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG 121
+L +D++ +T P++ A + PA LR+LDAIHLA A ++ L ++YD L+
Sbjct 64 ESFLSSDVDLVQITPPLLADASRVPPARLRTLDAIHLATALDLRDSLDIVLSYDKLLIEA 123
Query 122 CREVGFVTASPGA 134
G V ASPGA
Sbjct 124 VSASGLVPASPGA 136
>gi|336179976|ref|YP_004585351.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334860956|gb|AEH11430.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=138
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/135 (38%), Positives = 72/135 (54%), Gaps = 1/135 (0%)
Query 2 IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER 61
+Y+DTSAL KL I+E ET +LR W Q + +STL VE R++
Sbjct 5 VYLDTSALAKLFIAEKETPDLRQWFADQV-EPLRLVSSTLLAVELTRLLNLVNPTMLGPA 63
Query 62 ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG 121
+L +D++ +T P++G A + P LR+LDAIHLA A ++ L ++YD L+
Sbjct 64 ESFLSADVDLVEITPPLLGDAARVPPPRLRTLDAIHLATALDLRDSLDVVLSYDKLLVEA 123
Query 122 CREVGFVTASPGAVR 136
G ASPGA R
Sbjct 124 VHASGLPAASPGAGR 138
>gi|336178644|ref|YP_004584019.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334859624|gb|AEH10098.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=138
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/136 (42%), Positives = 74/136 (55%), Gaps = 6/136 (4%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IY+DTSA+ KL+ E E+ +L WL AQ Q E TS L VE R + R +P +
Sbjct 1 MIYLDTSAIVKLIRPELESDKLVDWLNAQ--QNERVITSKLAEVELPRAL-RREEPARLA 57
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQI---KRELTAFVTYDHR 117
+L LD L + + V A LRSLDAIHLA A Q+ + ++AFVTYD R
Sbjct 58 AVAGVLAHLDRLDIDDAVRATAGAYPFPHLRSLDAIHLATADQLVASGKTVSAFVTYDRR 117
Query 118 LLSGCREVGFVTASPG 133
L E+G A+PG
Sbjct 118 LAVTAGELGLAVAAPG 133
>gi|15842977|ref|NP_338014.1| hypothetical protein MT3492 [Mycobacterium tuberculosis CDC1551]
gi|308232444|ref|ZP_07664085.1| toxin [Mycobacterium tuberculosis SUMu001]
gi|308370247|ref|ZP_07666899.1| toxin [Mycobacterium tuberculosis SUMu002]
19 more sequence titles
Length=131
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/131 (36%), Positives = 71/131 (55%), Gaps = 5/131 (3%)
Query 2 IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER 61
IY+D+SA+ KL + EPE+ LR +L + + +S L R E MR + G+ +
Sbjct 5 IYLDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDKGESARKA- 59
Query 62 ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG 121
R L LD+L + + V+ LA + P LR+LDAIHLA A ++ +L TYD R+
Sbjct 60 GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA 119
Query 122 CREVGFVTASP 132
+ +G +P
Sbjct 120 AKTLGMAVIAP 130
>gi|15610520|ref|NP_217901.1| hypothetical protein Rv3384c [Mycobacterium tuberculosis H37Rv]
gi|31794564|ref|NP_857057.1| hypothetical protein Mb3416c [Mycobacterium bovis AF2122/97]
gi|121639308|ref|YP_979532.1| hypothetical protein BCG_3453c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
56 more sequence titles
Length=130
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/131 (36%), Positives = 71/131 (55%), Gaps = 5/131 (3%)
Query 2 IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER 61
IY+D+SA+ KL + EPE+ LR +L + + +S L R E MR + G+ +
Sbjct 4 IYLDSSAIVKLAVREPESDALRRYLRTRHPR----VSSALARAEVMRALLDKGESARKA- 58
Query 62 ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG 121
R L LD+L + + V+ LA + P LR+LDAIHLA A ++ +L TYD R+
Sbjct 59 GRRALAHLDLLRVDKRVLDLAGGLLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA 118
Query 122 CREVGFVTASP 132
+ +G +P
Sbjct 119 AKTLGMAVIAP 129
>gi|300790923|ref|YP_003771214.1| hypothetical protein AMED_9123 [Amycolatopsis mediterranei U32]
gi|299800437|gb|ADJ50812.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340532619|gb|AEK47824.1| hypothetical protein RAM_46795 [Amycolatopsis mediterranei S699]
Length=138
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/135 (42%), Positives = 72/135 (54%), Gaps = 4/135 (2%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IY+DT+AL KL+ E E+ L WL + QG TSTL VE R + R PG
Sbjct 1 MIYLDTAALVKLIRHEAESAALVDWLDER--QGTVLVTSTLAEVEVSRALLR-SDPGLLT 57
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAA-AQIKRELTAFVTYDHRLL 119
++ + + + V A LRSLDAIHLA A A R+LT+FVTYD RLL
Sbjct 58 DVPAVMARVAKYEIDDVVRRTAAAYPSPDLRSLDAIHLATAHAVFGRQLTSFVTYDKRLL 117
Query 120 SGCREVGFVTASPGA 134
+ +G T SPGA
Sbjct 118 AVAEALGLPTDSPGA 132
>gi|336177878|ref|YP_004583253.1| hypothetical protein FsymDg_1894 [Frankia symbiont of Datisca
glomerata]
gi|334858858|gb|AEH09332.1| hypothetical protein FsymDg_1894 [Frankia symbiont of Datisca
glomerata]
Length=136
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/135 (37%), Positives = 72/135 (54%), Gaps = 5/135 (3%)
Query 2 IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVV-ARYG--QPGQ 58
IY+D+SA+ K L++E ++ L + G+ +S+L +E + AR+G
Sbjct 3 IYLDSSAILKRLVAETDSLALVAAVDKHHEDGDLLVSSSLAWIEVTHALRARFGTDSASA 62
Query 59 TERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRL 118
T A L G+ PL+ V+ LA IGPA LRSLDAIHL +A + + +TYD RL
Sbjct 63 TVHADAALSGVAEHPLSPEVVSLARRIGPAVLRSLDAIHLTSALLLDAD--QMLTYDDRL 120
Query 119 LSGCREVGFVTASPG 133
C + G V +PG
Sbjct 121 AMACAQSGLVFTAPG 135
>gi|288917440|ref|ZP_06411806.1| hypothetical protein FrEUN1fDRAFT_1501 [Frankia sp. EUN1f]
gi|288351143|gb|EFC85354.1| hypothetical protein FrEUN1fDRAFT_1501 [Frankia sp. EUN1f]
Length=141
Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/133 (38%), Positives = 69/133 (52%), Gaps = 7/133 (5%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IY+D++A+ KL+++EPE+ L WL A+ TS L VE R + R P +
Sbjct 1 MIYLDSAAVVKLVVAEPESAALVDWLNARDDLPR--FTSALAEVEVARAI-RRAAPEASG 57
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQI----KRELTAFVTYDH 116
R +LD + L + V +A LRSLDAIHLA A ++ +L AFVTYD
Sbjct 58 RVPRVLDRMYRLEIDGRVRNVAAAFDDPLLRSLDAIHLATALRLVDANDTQLEAFVTYDK 117
Query 117 RLLSGCREVGFVT 129
RLL R T
Sbjct 118 RLLEAARRADLPT 130
>gi|336178809|ref|YP_004584184.1| PilT protein domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334859789|gb|AEH10263.1| PilT protein domain protein [Frankia symbiont of Datisca glomerata]
Length=129
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/118 (39%), Positives = 65/118 (56%), Gaps = 4/118 (3%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IY+D+SAL KL+ E ET LR+WL + G +S L +E R + R P
Sbjct 1 MIYLDSSALVKLVHPELETRALRSWLATRPGVS---VSSALAVLEVTRAL-RRSDPAALP 56
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRL 118
R +L + ++P+ +PVI A + LRSLDA+HLA A ++ FV+YD RL
Sbjct 57 RVPDVLSRVMLVPVDQPVIVAAAALTDPLLRSLDALHLATALRLDTPSLVFVSYDKRL 114
>gi|284045881|ref|YP_003396221.1| hypothetical protein Cwoe_4432 [Conexibacter woesei DSM 14684]
gi|283950102|gb|ADB52846.1| conserved hypothetical protein [Conexibacter woesei DSM 14684]
Length=131
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/133 (34%), Positives = 74/133 (56%), Gaps = 8/133 (6%)
Query 2 IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER 61
+Y+DTSAL ++++ EP+ + L E +S L R+E R+ R G +E
Sbjct 4 VYLDTSALGRVVLDEPDGDAIGAALAGF----EAVVSSRLLRIELHRLGLRTGI--ASEE 57
Query 62 ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQI--KRELTAFVTYDHRLL 119
L G+ I+PL + ++ AE + P+++ +LDAIHLA A Q+ +R + + +T+D RL
Sbjct 58 IEGWLAGVAIVPLDDAILAAAEAVSPSSVATLDAIHLATALQLAAERHIASIMTFDARLA 117
Query 120 SGCREVGFVTASP 132
G RE G +P
Sbjct 118 EGAREHGLDVITP 130
>gi|340628364|ref|YP_004746816.1| hypothetical protein MCAN_34091 [Mycobacterium canettii CIPT
140010059]
gi|340006554|emb|CCC45740.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=127
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/131 (36%), Positives = 71/131 (55%), Gaps = 5/131 (3%)
Query 2 IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER 61
+Y+D+SA+ KL + EPE+ LR +L + + +S L R E MR + R G+ +
Sbjct 1 MYLDSSAIVKLAVREPESDALRRYLRTRRPR----VSSALARAEVMRALLRQGESARKA- 55
Query 62 ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG 121
R +L LD+L + V+ LA + P LR+LDAIHLA A ++ +L TYD R+
Sbjct 56 GRRVLASLDLLRIDTRVLDLAGALLPFELRTLDAIHLATAQRLGVDLGRLCTYDDRMRDA 115
Query 122 CREVGFVTASP 132
+G +P
Sbjct 116 ADALGMAVIAP 126
>gi|86741564|ref|YP_481964.1| PilT protein-like protein [Frankia sp. CcI3]
gi|86568426|gb|ABD12235.1| PilT protein-like [Frankia sp. CcI3]
Length=129
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/131 (35%), Positives = 67/131 (52%), Gaps = 4/131 (3%)
Query 3 YMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTERA 62
Y+D+SAL KL E T LR+WL + G A +S L +E R + R P R
Sbjct 3 YLDSSALMKLTHPERGTRALRSWLAVRPGV---AVSSALVMLEVTRAL-RRSDPAALPRI 58
Query 63 RYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGC 122
+L + ++P+ +P++ A + LRSLDA+HLA A ++ FV+YD RL +
Sbjct 59 PDVLSRITLVPIDQPIMVSAAALTDPLLRSLDALHLATALRLDAPSLVFVSYDKRLSTAA 118
Query 123 REVGFVTASPG 133
+ G A P
Sbjct 119 AQEGLTVAVPA 129
>gi|336178692|ref|YP_004584067.1| hypothetical protein FsymDg_2810 [Frankia symbiont of Datisca
glomerata]
gi|334859672|gb|AEH10146.1| hypothetical protein FsymDg_2810 [Frankia symbiont of Datisca
glomerata]
Length=135
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/138 (39%), Positives = 71/138 (52%), Gaps = 7/138 (5%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IY+D++A+ KL+ +EP T +L WL A + +S L VE+ R + R P
Sbjct 1 MIYLDSAAVIKLVRAEPFTVDLLDWLDAH--RALPLVSSVLVEVEASRALRRCA-PQALG 57
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRE----LTAFVTYDH 116
R L L L + V +A LRSLDA+HLA A + + L AFVTYD
Sbjct 58 RLPVTLARLYRLEINATVRAVAAAYDDPQLRSLDAVHLATATVLTDQPGARLEAFVTYDK 117
Query 117 RLLSGCREVGFVTASPGA 134
RLL+ G TASPGA
Sbjct 118 RLLAIAARAGLPTASPGA 135
>gi|296169352|ref|ZP_06850977.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895974|gb|EFG75664.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=130
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/132 (35%), Positives = 68/132 (52%), Gaps = 5/132 (3%)
Query 2 IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER 61
IY+D+SA+ KL + EPE+ LR +L + + +S L R E MR + G+
Sbjct 4 IYLDSSAIVKLAVREPESDALRRYLRTRLPR----VSSALARTEVMRALLHKGE-SARRA 58
Query 62 ARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSG 121
R L LD+L + ++ LA + P LR+LDAIHLA A ++ +L TYD R+
Sbjct 59 GRRALASLDLLRIDNRLLDLAGGLLPIELRTLDAIHLATAQRLGMDLGRLCTYDDRMRDA 118
Query 122 CREVGFVTASPG 133
+G +P
Sbjct 119 AEALGMAVIAPS 130
>gi|302864894|ref|YP_003833531.1| hypothetical protein Micau_0388 [Micromonospora aurantiaca ATCC
27029]
gi|302567753|gb|ADL43955.1| hypothetical protein Micau_0388 [Micromonospora aurantiaca ATCC
27029]
Length=136
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/137 (37%), Positives = 68/137 (50%), Gaps = 7/137 (5%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IY+D++A+ K+L E ET +L WL ++G +S L VE R + R P
Sbjct 1 MIYLDSAAVIKMLRREAETADLLGWLNERAGTA--LVSSALAEVEVPRAL-RRAAPQALV 57
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKR----ELTAFVTYDH 116
+L L + + V A LRSLDA+HLA A + R E AFVTYD
Sbjct 58 GVPSVLGRLYRVEIDATVRATAGAYPEPMLRSLDAVHLATAEILARQAAAEFVAFVTYDK 117
Query 117 RLLSGCREVGFVTASPG 133
RLL + +G ASPG
Sbjct 118 RLLEAAKAIGLPVASPG 134
>gi|256372388|ref|YP_003110212.1| PilT protein domain-containing protein [Acidimicrobium ferrooxidans
DSM 10331]
gi|256008972|gb|ACU54539.1| PilT protein domain protein [Acidimicrobium ferrooxidans DSM
10331]
Length=130
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/132 (38%), Positives = 72/132 (55%), Gaps = 4/132 (3%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
V Y+DTSA KL+++EP + + +W + Q S L R E +R R P + +
Sbjct 2 VFYLDTSAAAKLVVAEPASEAMASWAASHETQ---VIASDLLRTELLRAT-RRAAPDRMQ 57
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS 120
RAR +LD L + LT + A T+ P LRSLDA+HLAAA ++ EL VTYD+R+ +
Sbjct 58 RARSVLDALTLFNLTSATLERAATLDPEELRSLDALHLAAALELGDELDGIVTYDNRMAA 117
Query 121 GCREVGFVTASP 132
+ G P
Sbjct 118 AASQYGVAVIVP 129
>gi|315501180|ref|YP_004080067.1| hypothetical protein ML5_0364 [Micromonospora sp. L5]
gi|315407799|gb|ADU05916.1| hypothetical protein ML5_0364 [Micromonospora sp. L5]
Length=136
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/137 (37%), Positives = 68/137 (50%), Gaps = 7/137 (5%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IY+D++A+ K+L E ET +L WL ++G +S L VE R + R P
Sbjct 1 MIYLDSAAVIKMLRREAETADLLGWLNERAGTA--LVSSALVEVEVPRAL-RRAAPQALV 57
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKR----ELTAFVTYDH 116
+L L + + V A LRSLDA+HLA A + R E AFVTYD
Sbjct 58 GVPSVLGRLYRVEIDATVRATAGAYPEPMLRSLDAVHLATAEILARQAAAEFVAFVTYDE 117
Query 117 RLLSGCREVGFVTASPG 133
RLL + +G ASPG
Sbjct 118 RLLEAAKAIGLPVASPG 134
>gi|284029011|ref|YP_003378942.1| hypothetical protein Kfla_1038 [Kribbella flavida DSM 17836]
gi|283808304|gb|ADB30143.1| hypothetical protein Kfla_1038 [Kribbella flavida DSM 17836]
Length=134
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/141 (36%), Positives = 66/141 (47%), Gaps = 15/141 (10%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQP---- 56
+IY+D AL K + E E+ LR W A E TS L ++E R + R G
Sbjct 1 MIYLDACALLKFIKPEKESAALRKWREALPPDTE-LLTSELAKLEITRTLLRAGVDHQQV 59
Query 57 ----GQTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFV 112
GQ R Y++D L+ V+ A A L SLDAIHLA+A + +L FV
Sbjct 60 PYFTGQAVRGIYVVD------LSSTVLARAMAYRTARLGSLDAIHLASAEPFRADLEQFV 113
Query 113 TYDHRLLSGCREVGFVTASPG 133
TYD L E+GF +P
Sbjct 114 TYDKELSGAAAELGFPVLAPA 134
>gi|229821860|ref|YP_002883386.1| twitching mobility protein PilT [Beutenbergia cavernae DSM 12333]
gi|229567773|gb|ACQ81624.1| PilT protein domain protein [Beutenbergia cavernae DSM 12333]
Length=131
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/131 (40%), Positives = 69/131 (53%), Gaps = 5/131 (3%)
Query 3 YMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTERA 62
Y+DTSA KL+ E E+ L +L ++ +A TS +G VE +RV AR G P Q RA
Sbjct 5 YLDTSASAKLIAVEAESAALADYL--RASPDAEAVTSVVGIVELLRVGARLG-PAQRLRA 61
Query 63 RYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGC 122
L L + LTE + A PA LR+LDAIH+A+A E + V+YD RL
Sbjct 62 VDLAARLGTIALTESIARAAADAAPANLRTLDAIHVASAVVAGAE--SVVSYDARLSEAA 119
Query 123 REVGFVTASPG 133
G +PG
Sbjct 120 VAAGLRVVAPG 130
>gi|306818894|ref|ZP_07452615.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
gi|304648296|gb|EFM45600.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
Length=97
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/86 (45%), Positives = 50/86 (59%), Gaps = 1/86 (1%)
Query 48 RVVARYGQPGQTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRE 107
RV R G Q +AR +LD L+++ ++ + LA + P LRSLDAIHLA A Q+ +
Sbjct 10 RVTGRLG-VAQRGQARAILDALNLVRISSQICDLAGLLEPTVLRSLDAIHLATALQVGDD 68
Query 108 LTAFVTYDHRLLSGCREVGFVTASPG 133
L A VTYD RL + VG SPG
Sbjct 69 LEALVTYDLRLGVAAQMVGIPLLSPG 94
>gi|325067177|ref|ZP_08125850.1| PilT protein domain-containing protein [Actinomyces oris K20]
Length=131
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/135 (35%), Positives = 68/135 (51%), Gaps = 8/135 (5%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
V Y+DTSA KLLI E E+ L WLT+ + G+ +S L E R G+ Q E
Sbjct 3 VYYLDTSAALKLLIEEKESEPLAAWLTSHTTDGDSLCSSFLLHTELHCAARRRGELNQ-E 61
Query 61 RARYLLDGLDILPLTEPVIGLAE--TIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRL 118
LL G+D++ ++ + A ++G LR+ DAIHL AA I+ + A VTYD +
Sbjct 62 AVASLLSGIDLIDVSRSHLTDAARTSMG---LRAADAIHLTAALDIQAD--AIVTYDIEM 116
Query 119 LSGCREVGFVTASPG 133
+ R +P
Sbjct 117 QNAARYCNLSPVAPS 131
>gi|108802491|ref|YP_642687.1| hypothetical protein Mmcs_5531 [Mycobacterium sp. MCS]
gi|119855319|ref|YP_935922.1| hypothetical protein Mkms_5933 [Mycobacterium sp. KMS]
gi|108772910|gb|ABG11631.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119698036|gb|ABL95107.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=133
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/134 (33%), Positives = 68/134 (51%), Gaps = 5/134 (3%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQ-T 59
+IY+D +A+ KL+ PE+ L T+L A + T L R++ +R A P + T
Sbjct 1 MIYLDATAIMKLIAQAPESAALTTYLRAHTDTRW--FTCALSRLDVVRATA--ALPAEAT 56
Query 60 ERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLL 119
E A +L GLD + +T+ ++ A + PA R+ DA+H+AAA L +TYD L
Sbjct 57 EHAHRILAGLDTVAVTDRLLDAAVALTPAPARTTDALHIAAALSAGPRLRTLITYDPDLS 116
Query 120 SGCREVGFVTASPG 133
+ T PG
Sbjct 117 RAAADHHINTVHPG 130
>gi|307701081|ref|ZP_07638106.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris FB024-16]
gi|307614076|gb|EFN93320.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris FB024-16]
Length=87
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/76 (45%), Positives = 46/76 (61%), Gaps = 0/76 (0%)
Query 58 QTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHR 117
Q +AR +LD L+++ ++ + LA + P LRSLDAIHLA A Q+ +L A VTYD R
Sbjct 9 QRGQARAILDALNLVRISSQICDLAGLLEPTVLRSLDAIHLATALQVGDDLEALVTYDLR 68
Query 118 LLSGCREVGFVTASPG 133
L + VG SPG
Sbjct 69 LGVAAQMVGIPLLSPG 84
>gi|296169436|ref|ZP_06851057.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895905|gb|EFG75599.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=135
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/135 (38%), Positives = 63/135 (47%), Gaps = 5/135 (3%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IY+DTSAL KL+ E E+ L WL ++ TS L VE R + R P
Sbjct 1 MIYLDTSALVKLIRIEVESDALADWLDERTETRW--ITSALAEVELPRAI-RAVAPNGLS 57
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAA--AQIKRELTAFVTYDHRL 118
+L LD + + + A LRSLDAIHLA A A LTA V YD RL
Sbjct 58 AVPSVLARLDRFEIDQVIRATAAAYPDPALRSLDAIHLATAQIAASTAPLTAMVAYDSRL 117
Query 119 LSGCREVGFVTASPG 133
R +G +PG
Sbjct 118 SDAARALGITIVTPG 132
>gi|182435669|ref|YP_001823388.1| hypothetical protein SGR_1876 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178464185|dbj|BAG18705.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length=144
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/145 (35%), Positives = 70/145 (49%), Gaps = 15/145 (10%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVV--ARYGQPGQ 58
+IY+D+ AL KL+ E +T L +L + Q + TS L E MRV+ AR G GQ
Sbjct 1 MIYLDSCALVKLIKREKDTDALVAFLEERPQQRQ--VTSDLAVTEIMRVIRRARCGPQGQ 58
Query 59 T-----------ERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRE 107
E A L+ D++ L ++ A + ++SLDAIHLA+A +
Sbjct 59 LLIDDLTFTRLLEAAEKRLNATDLVTLDLALLEEAGALEEFNIKSLDAIHLASALMLGPS 118
Query 108 LTAFVTYDHRLLSGCREVGFVTASP 132
LT+FVTYD L G SP
Sbjct 119 LTSFVTYDGGLRGHAENRGLPVFSP 143
>gi|227875583|ref|ZP_03993723.1| hypothetical protein HMPREF0577_1024 [Mobiluncus mulieris ATCC
35243]
gi|227843919|gb|EEJ54088.1| hypothetical protein HMPREF0577_1024 [Mobiluncus mulieris ATCC
35243]
Length=97
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/93 (44%), Positives = 52/93 (56%), Gaps = 6/93 (6%)
Query 41 LGRVESMRVVARYGQPGQTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAA 100
L RV VA+ GQ AR +LD L+++ ++ + LA + PA LRSLDAIHLA
Sbjct 8 LARVTGRLDVAQRGQ------ARAILDALNLVRISSQICDLAGLLEPAVLRSLDAIHLAT 61
Query 101 AAQIKRELTAFVTYDHRLLSGCREVGFVTASPG 133
A Q+ +L A VTYD RL + G SPG
Sbjct 62 ALQVGDDLEALVTYDLRLGVAAQMGGIPLLSPG 94
>gi|284029018|ref|YP_003378949.1| hypothetical protein Kfla_1046 [Kribbella flavida DSM 17836]
gi|283808311|gb|ADB30150.1| conserved hypothetical protein [Kribbella flavida DSM 17836]
Length=131
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/133 (36%), Positives = 65/133 (49%), Gaps = 4/133 (3%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+IY+ T+AL KL+ E + L WL + +S L +E R + R +P
Sbjct 1 MIYLATAALVKLVRREVPSDALTDWLNDRMDLP--LVSSALAEIELPRAL-RRTEPALLA 57
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAA-AQIKRELTAFVTYDHRLL 119
+L L + + E V A +R LDAIHLA A A + +LTAFVTYD RLL
Sbjct 58 AVPAVLSRLAVYEIDEQVRATAAAYADPLIRPLDAIHLATAHAVLADDLTAFVTYDRRLL 117
Query 120 SGCREVGFVTASP 132
+ +G TA P
Sbjct 118 ASAETLGLPTACP 130
>gi|269977174|ref|ZP_06184147.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris 28-1]
gi|269934477|gb|EEZ91038.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris 28-1]
Length=87
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/76 (45%), Positives = 46/76 (61%), Gaps = 0/76 (0%)
Query 58 QTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHR 117
Q +AR +LD L+++ ++ + LA + PA LRSLDAIHLA A Q+ +L A VTYD R
Sbjct 9 QRGQARAILDALNLVRISSQICDLAGLLEPAVLRSLDAIHLATALQVGDDLEALVTYDLR 68
Query 118 LLSGCREVGFVTASPG 133
L + G SPG
Sbjct 69 LGVAAQMGGIPLLSPG 84
>gi|326771646|ref|ZP_08230931.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces
viscosus C505]
gi|326637779|gb|EGE38680.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces
viscosus C505]
Length=131
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/135 (34%), Positives = 67/135 (50%), Gaps = 8/135 (5%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
V Y+DTSA KLLI E E+ L WLT+ + G+ +S L E + AR E
Sbjct 3 VYYLDTSAALKLLIEEKESEPLAAWLTSHTTDGDSLCSSFLLHTE-LHCAARRRSELDQE 61
Query 61 RARYLLDGLDILPLTEP-VIGLAET-IGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRL 118
LL G++++ ++ +I A T +G LR+ DAIHL A I+ + A +TYD +
Sbjct 62 TVASLLSGINLIDISRSQLIDAARTSLG---LRAADAIHLTVALDIRAD--AIITYDIEM 116
Query 119 LSGCREVGFVTASPG 133
+ R +P
Sbjct 117 QNAARSCNLSPVAPS 131
>gi|312198893|ref|YP_004018954.1| PilT protein domain protein [Frankia sp. EuI1c]
gi|311230229|gb|ADP83084.1| PilT protein domain protein [Frankia sp. EuI1c]
Length=146
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/144 (30%), Positives = 69/144 (48%), Gaps = 16/144 (11%)
Query 1 VIYMDTSALTKLLISEP-ETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQT 59
+ Y DTSA LL+ EP T +R W A + +S L VE+ +A+ + G+
Sbjct 2 ICYFDTSAFVPLLVDEPGSATAIRIWDAA-----DRVVSSRLLHVEAAAALAQANRLGKL 56
Query 60 E---------RARYLLDGLDILPLTEPVIGLAETIG-PATLRSLDAIHLAAAAQIKRELT 109
R + D+LP+T+ ++ A T+ LR+ DA+H AAA + +
Sbjct 57 SGSAHQAALLRLNDIYAEFDLLPITDGLVSRAATLARQLALRAFDAMHCAAAQLLASDDL 116
Query 110 AFVTYDHRLLSGCREVGFVTASPG 133
+ D +LL+ CR +G TA+ G
Sbjct 117 VVASGDRKLLAACRTLGLATANTG 140
>gi|15609099|ref|NP_216478.1| hypothetical protein Rv1962c [Mycobacterium tuberculosis H37Rv]
gi|15841433|ref|NP_336470.1| hypothetical protein MT2012 [Mycobacterium tuberculosis CDC1551]
gi|31793154|ref|NP_855647.1| hypothetical protein Mb1997c [Mycobacterium bovis AF2122/97]
81 more sequence titles
Length=135
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/141 (36%), Positives = 66/141 (47%), Gaps = 11/141 (7%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVE---SMRVVARYGQPG 57
+IY++TSAL KL+ E E+ L WL ++ TS L VE ++R V+ G P
Sbjct 1 MIYLETSALVKLIRIEVESDALADWLDDRTELRW--ITSALTEVELSRAIRAVSPEGLPA 58
Query 58 QTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAA--AQIKRELTAFVTYD 115
+L LD + + A LRSLDAIHLA A A LTA VTYD
Sbjct 59 VPS----VLARLDRFEIDAVIRSTAAAYPNPALRSLDAIHLATAQTAGSVAPLTALVTYD 114
Query 116 HRLLSGCREVGFVTASPGAVR 136
+RL + +PG R
Sbjct 115 NRLKEAAEALSLAVVAPGQAR 135
>gi|340358514|ref|ZP_08681031.1| PilT domain protein [Actinomyces sp. oral taxon 448 str. F0400]
gi|339886364|gb|EGQ76022.1| PilT domain protein [Actinomyces sp. oral taxon 448 str. F0400]
Length=137
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/138 (31%), Positives = 61/138 (45%), Gaps = 8/138 (5%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAA-----TSTLGRVESMRVVARYGQ 55
+ Y+DTSA KLLI E E+ L WL D+A S+ + AR +
Sbjct 3 IYYLDTSAALKLLIEEDESEPLAQWLNQTVSHSPDSAGDIALCSSFLLSTELHCAARRRR 62
Query 56 PGQTERARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYD 115
E LL G++++ ++ + L A LRS DAIHL A I+ + A +TYD
Sbjct 63 ELDEEAVATLLSGVELVDVSREHL-LNAAGDSAGLRSADAIHLTVALDIRSD--ALLTYD 119
Query 116 HRLLSGCREVGFVTASPG 133
+ R G +P
Sbjct 120 REMRIAARRRGLGVVAPA 137
>gi|320108976|ref|YP_004184566.1| hypothetical protein AciPR4_3823 [Terriglobus saanensis SP1PR4]
gi|319927497|gb|ADV84572.1| hypothetical protein AciPR4_3823 [Terriglobus saanensis SP1PR4]
Length=148
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/145 (33%), Positives = 67/145 (47%), Gaps = 18/145 (12%)
Query 3 YMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQ-----PG 57
++DTSAL KL I+E T E+ + A+ + + S L ++E+ + R Q P
Sbjct 4 FIDTSALVKLFIAEQGTNEMLRFANAEDDRNK--VISALAQIEARSAICRLRQGNFIDPA 61
Query 58 QTERA-RYLLDGLDIL---PLTEPVIGLAET-IGPATLRSLDAIHLAAAAQIKRELTA-- 110
+T A L D + + PL PVI A T I LR+LDA L +A + R+L
Sbjct 62 ETALALNSLADEIRRVIEQPLNPPVIEAASTVIDRYYLRALDAAQLGSAI-VARDLLGAS 120
Query 111 ---FVTYDHRLLSGCREVGFVTASP 132
F+ D LL E GF P
Sbjct 121 DMRFIASDKALLEAAHEEGFDVWDP 145
>gi|145223797|ref|YP_001134475.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145216283|gb|ABP45687.1| PilT protein domain protein [Mycobacterium gilvum PYR-GCK]
Length=235
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/139 (29%), Positives = 65/139 (47%), Gaps = 16/139 (11%)
Query 1 VIYMDTSALTKLLISEPETTELRT-WLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQT 59
+ Y+DTSA LLI EP + R W A + +S L VE+ +A+ G+ G+
Sbjct 89 IGYLDTSAFVPLLIDEPASVACRRFWDDADA-----IVSSRLLYVETAAALAQAGRIGRL 143
Query 60 ERARYL---------LDGLDILPLTEPVIGLAETIGPA-TLRSLDAIHLAAAAQIKRELT 109
+L +D++ + E ++ A + +LR DA+H A+A Q+ +
Sbjct 144 TEGEHLQARRRLGQMWSEMDVIEVDEQIVTRAADLAHRLSLRGYDAVHAASAEQLDDDDV 203
Query 110 AFVTYDHRLLSGCREVGFV 128
A + D RLLS ++G
Sbjct 204 AAASGDQRLLSAWMDLGMA 222
>gi|269795913|ref|YP_003315368.1| hypothetical protein Sked_26300 [Sanguibacter keddieii DSM 10542]
gi|269098098|gb|ACZ22534.1| hypothetical protein Sked_26300 [Sanguibacter keddieii DSM 10542]
Length=133
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/132 (29%), Positives = 65/132 (50%), Gaps = 7/132 (5%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
++Y+D+S + ++ PE L+ W+ G +S L R E +RV+ R G+P
Sbjct 5 IVYLDSSVGLRTILDVPERLRLQEWMQT---PGMSLVSSRLLRTEVVRVLRRDGRP--LS 59
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS 120
A LLD + + LT +AE+I +++LDA+HLA A + EL ++D +
Sbjct 60 DAAPLLDRVGTIDLTRETHSVAESI-ERHIKTLDALHLATALLVG-ELVMVASHDATMKR 117
Query 121 GCREVGFVTASP 132
++G P
Sbjct 118 VAEQLGLSVTDP 129
>gi|336115824|ref|YP_004570590.1| hypothetical protein MLP_01730 [Microlunatus phosphovorus NM-1]
gi|334683602|dbj|BAK33187.1| hypothetical protein MLP_01730 [Microlunatus phosphovorus NM-1]
Length=139
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/134 (30%), Positives = 66/134 (50%), Gaps = 5/134 (3%)
Query 1 VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTE 60
+ Y+D+S ++L++ + E W ++ G+ A+S L +E RV R E
Sbjct 11 IWYLDSSVALRVLLAH--SVEAAEWFDERAFAGDAFASSRLLELELTRVF-RRESLDVVE 67
Query 61 RARYLLDGLDILPLTEPVIGLAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLS 120
A ++ + L +L + + ++ A I P LRSLDA+HLA A +I + VT+D +
Sbjct 68 VADFVAE-LTLLTVDDALVAEAAAIVP-HLRSLDALHLAGAQRIGVDAVTIVTHDLGMAK 125
Query 121 GCREVGFVTASPGA 134
+GF P A
Sbjct 126 TAESLGFAVHDPVA 139
>gi|124516076|gb|EAY57585.1| conserved hypothetical protein [Leptospirillum rubarum]
gi|206603762|gb|EDZ40242.1| Conserved protein of unknown function [Leptospirillum sp. Group
II '5-way CG']
Length=156
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/143 (25%), Positives = 64/143 (45%), Gaps = 24/143 (16%)
Query 2 IYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVESMRVVARYGQPGQTER 61
+Y+D+SA+ K + EP +R W + + ATS + E VV+ + Q ++E
Sbjct 5 LYLDSSAIVKFYVHEPHYQNVRQW----AESADILATSEIAYTE---VVSAFSQKVRSEE 57
Query 62 ARY-----LLDGLDILPL-------TEPVIGLAETIGPAT-LRSLDAIHLAAAAQIKREL 108
+ +L L+ L +P+ + P LR++D++HL AA + ++
Sbjct 58 IGWDYVSQVLPKLNQLWFGRLAVVRIDPLEAAQYVLSPTFPLRAMDSVHLHAAIAFRSQM 117
Query 109 ----TAFVTYDHRLLSGCREVGF 127
F ++D RL+ GF
Sbjct 118 PEYSVMFCSFDRRLIQAANTYGF 140
Lambda K H
0.318 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128858389450
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40