BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3414c
Length=212
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610550|ref|NP_217931.1| RNA polymerase sigma factor SigD [M... 421 3e-116
gi|15843010|ref|NP_338047.1| RNA polymerase sigma factor SigD [M... 421 4e-116
gi|323717901|gb|EGB27090.1| alternative RNA polymerase sigma fac... 377 6e-103
gi|118616665|ref|YP_904997.1| RNA polymerase sigma factor SigD [... 372 1e-101
gi|308232456|ref|ZP_07664090.1| sigma-70 region 2 subfamily [Myc... 372 1e-101
gi|240167835|ref|ZP_04746494.1| RNA polymerase sigma factor SigD... 357 7e-97
gi|41410373|ref|NP_963209.1| RNA polymerase sigma factor SigD [M... 347 6e-94
gi|296168781|ref|ZP_06850467.1| RNA polymerase sigma-70 factor [... 344 6e-93
gi|118466654|ref|YP_883494.1| RNA polymerase sigma factor SigD [... 337 9e-91
gi|339299839|gb|AEJ51949.1| RNA polymerase sigma factor SigD [My... 328 4e-88
gi|342861909|ref|ZP_08718554.1| RNA polymerase sigma factor SigD... 324 6e-87
gi|254776788|ref|ZP_05218304.1| RNA polymerase sigma factor SigD... 324 6e-87
gi|254821000|ref|ZP_05226001.1| RNA polymerase sigma factor SigD... 320 7e-86
gi|120402517|ref|YP_952346.1| RNA polymerase sigma factor SigD [... 308 3e-82
gi|145225488|ref|YP_001136166.1| RNA polymerase sigma factor Sig... 305 2e-81
gi|126433794|ref|YP_001069485.1| RNA polymerase sigma factor Sig... 297 5e-79
gi|108798135|ref|YP_638332.1| RNA polymerase sigma factor SigD [... 297 8e-79
gi|169630803|ref|YP_001704452.1| RNA polymerase sigma factor Sig... 275 3e-72
gi|118470176|ref|YP_885978.1| RNA polymerase sigma factor SigD [... 274 6e-72
gi|54022859|ref|YP_117101.1| RNA polymerase sigma factor SigD [N... 254 8e-66
gi|325675534|ref|ZP_08155218.1| RNA polymerase sigma-70 factor [... 252 2e-65
gi|111023159|ref|YP_706131.1| RNA polymerase sigma factor SigD [... 249 1e-64
gi|296138633|ref|YP_003645876.1| ECF subfamily RNA polymerase si... 246 1e-63
gi|226305419|ref|YP_002765377.1| RNA polymerase ECF-type sigma f... 246 2e-63
gi|256380524|ref|YP_003104184.1| ECF subfamily RNA polymerase si... 242 3e-62
gi|291003916|ref|ZP_06561889.1| RNA polymerase, sigma-24 subunit... 239 2e-61
gi|257054541|ref|YP_003132373.1| RNA polymerase sigma factor, si... 238 6e-61
gi|331699102|ref|YP_004335341.1| ECF subfamily RNA polymerase si... 224 6e-57
gi|333921687|ref|YP_004495268.1| RNA polymerase sigma-70 factor ... 223 2e-56
gi|262201670|ref|YP_003272878.1| sigma-70 family RNA polymerase ... 221 4e-56
gi|325000820|ref|ZP_08121932.1| RNA polymerase sigma factor, sig... 218 3e-55
gi|300788221|ref|YP_003768512.1| RNA polymerase sigma-70 factor,... 218 4e-55
gi|326381881|ref|ZP_08203574.1| RNA polymerase sigma factor SigD... 218 6e-55
gi|343928276|ref|ZP_08767729.1| RNA polymerase ECF-type sigma fa... 215 4e-54
gi|134103141|ref|YP_001108802.1| RNA polymerase sigma factor [Sa... 214 7e-54
gi|319950730|ref|ZP_08024626.1| RNA polymerase sigma factor SigD... 212 2e-53
gi|302524083|ref|ZP_07276425.1| RNA polymerase sigma factor [Str... 208 5e-52
gi|256379190|ref|YP_003102850.1| ECF subfamily RNA polymerase si... 207 9e-52
gi|256379786|ref|YP_003103446.1| ECF subfamily RNA polymerase si... 195 5e-48
gi|255323977|ref|ZP_05365103.1| RNA polymerase sigma factor SigD... 192 4e-47
gi|311739988|ref|ZP_07713822.1| RNA polymerase sigma-70 factor [... 191 7e-47
gi|344045964|gb|EGV41633.1| RNA polymerase sigma factor SigD [Co... 189 2e-46
gi|227502737|ref|ZP_03932786.1| RNA polymerase sigma factor SigD... 188 4e-46
gi|19551834|ref|NP_599836.1| RNA polymerase sigma factor SigD [C... 187 9e-46
gi|302528576|ref|ZP_07280918.1| hypothetical protein SSMG_04958 ... 187 1e-45
gi|262183837|ref|ZP_06043258.1| RNA polymerase sigma factor SigD... 186 2e-45
gi|227832306|ref|YP_002834013.1| ECF-family sigma factor D [Cory... 186 2e-45
gi|227505282|ref|ZP_03935331.1| RNA polymerase sigma factor SigD... 184 6e-45
gi|25027161|ref|NP_737215.1| RNA polymerase sigma factor SigD [C... 183 1e-44
gi|259506704|ref|ZP_05749606.1| RNA polymerase sigma-70 factor, ... 183 2e-44
>gi|15610550|ref|NP_217931.1| RNA polymerase sigma factor SigD [Mycobacterium tuberculosis
H37Rv]
gi|31794595|ref|NP_857088.1| RNA polymerase sigma factor SigD [Mycobacterium bovis AF2122/97]
gi|121639339|ref|YP_979563.1| RNA polymerase sigma factor SigD [Mycobacterium bovis BCG str.
Pasteur 1173P2]
52 more sequence titles
Length=212
Score = 421 bits (1083), Expect = 3e-116, Method: Compositional matrix adjust.
Identities = 212/212 (100%), Positives = 212/212 (100%), Gaps = 0/212 (0%)
Query 1 MVDPGVSPGCVRFVTLEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCR 60
MVDPGVSPGCVRFVTLEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCR
Sbjct 1 MVDPGVSPGCVRFVTLEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCR 60
Query 61 ARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRD 120
ARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRD
Sbjct 61 ARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRD 120
Query 121 RAYPAETLPERWSADAGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETA 180
RAYPAETLPERWSADAGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETA
Sbjct 121 RAYPAETLPERWSADAGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETA 180
Query 181 AAVGSTTGAVRVAQHRALQRLKDEIVAAGDYA 212
AAVGSTTGAVRVAQHRALQRLKDEIVAAGDYA
Sbjct 181 AAVGSTTGAVRVAQHRALQRLKDEIVAAGDYA 212
>gi|15843010|ref|NP_338047.1| RNA polymerase sigma factor SigD [Mycobacterium tuberculosis
CDC1551]
gi|13883351|gb|AAK47861.1| RNA polymerase sigma-70 factor, ECF subfamily [Mycobacterium
tuberculosis CDC1551]
Length=224
Score = 421 bits (1082), Expect = 4e-116, Method: Compositional matrix adjust.
Identities = 212/212 (100%), Positives = 212/212 (100%), Gaps = 0/212 (0%)
Query 1 MVDPGVSPGCVRFVTLEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCR 60
MVDPGVSPGCVRFVTLEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCR
Sbjct 13 MVDPGVSPGCVRFVTLEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCR 72
Query 61 ARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRD 120
ARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRD
Sbjct 73 ARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRD 132
Query 121 RAYPAETLPERWSADAGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETA 180
RAYPAETLPERWSADAGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETA
Sbjct 133 RAYPAETLPERWSADAGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETA 192
Query 181 AAVGSTTGAVRVAQHRALQRLKDEIVAAGDYA 212
AAVGSTTGAVRVAQHRALQRLKDEIVAAGDYA
Sbjct 193 AAVGSTTGAVRVAQHRALQRLKDEIVAAGDYA 224
>gi|323717901|gb|EGB27090.1| alternative RNA polymerase sigma factor sigD [Mycobacterium tuberculosis
CDC1551A]
Length=191
Score = 377 bits (968), Expect = 6e-103, Method: Compositional matrix adjust.
Identities = 191/191 (100%), Positives = 191/191 (100%), Gaps = 0/191 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC
Sbjct 1 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM
Sbjct 61 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL
Sbjct 121 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 180
Query 202 KDEIVAAGDYA 212
KDEIVAAGDYA
Sbjct 181 KDEIVAAGDYA 191
>gi|118616665|ref|YP_904997.1| RNA polymerase sigma factor SigD [Mycobacterium ulcerans Agy99]
gi|183981155|ref|YP_001849446.1| alternative RNA polymerase sigma-D factor, SigD [Mycobacterium
marinum M]
gi|118568775|gb|ABL03526.1| alternative RNA polymerase sigma-D factor, SigD [Mycobacterium
ulcerans Agy99]
gi|183174481|gb|ACC39591.1| alternative RNA polymerase sigma-D factor, SigD [Mycobacterium
marinum M]
Length=197
Score = 372 bits (956), Expect = 1e-101, Method: Compositional matrix adjust.
Identities = 189/197 (96%), Positives = 195/197 (99%), Gaps = 0/197 (0%)
Query 16 LEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 75
+EISPSMT++GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD
Sbjct 1 MEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60
Query 76 VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSAD 135
VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRD AYPAE++PER SAD
Sbjct 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPAESVPERRSAD 120
Query 136 AGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 195
AGPEQ+AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH
Sbjct 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 180
Query 196 RALQRLKDEIVAAGDYA 212
RALQRLKDEIVAAGDYA
Sbjct 181 RALQRLKDEIVAAGDYA 197
>gi|308232456|ref|ZP_07664090.1| sigma-70 region 2 subfamily [Mycobacterium tuberculosis SUMu001]
gi|308370259|ref|ZP_07666904.1| sigma-70 region 2 subfamily [Mycobacterium tuberculosis SUMu002]
gi|308371340|ref|ZP_07424624.2| sigma-70 region 2 subfamily [Mycobacterium tuberculosis SUMu003]
21 more sequence titles
Length=189
Score = 372 bits (956), Expect = 1e-101, Method: Compositional matrix adjust.
Identities = 189/189 (100%), Positives = 189/189 (100%), Gaps = 0/189 (0%)
Query 24 MQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLA 83
MQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLA
Sbjct 1 MQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLA 60
Query 84 TITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAI 143
TITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAI
Sbjct 61 TITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAI 120
Query 144 EADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKD 203
EADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKD
Sbjct 121 EADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKD 180
Query 204 EIVAAGDYA 212
EIVAAGDYA
Sbjct 181 EIVAAGDYA 189
>gi|240167835|ref|ZP_04746494.1| RNA polymerase sigma factor SigD [Mycobacterium kansasii ATCC
12478]
Length=191
Score = 357 bits (916), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 180/191 (95%), Positives = 188/191 (99%), Gaps = 0/191 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
MT++GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGT+ERSGL+ADDVAQEVC
Sbjct 1 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTIERSGLTADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRD AYPAE++P+R SADAGPEQ+
Sbjct 61 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPAESVPDRRSADAGPEQL 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
IEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL
Sbjct 121 VIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 180
Query 202 KDEIVAAGDYA 212
KDEIVAAGDYA
Sbjct 181 KDEIVAAGDYA 191
>gi|41410373|ref|NP_963209.1| RNA polymerase sigma factor SigD [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41399207|gb|AAS06825.1| SigD [Mycobacterium avium subsp. paratuberculosis K-10]
Length=198
Score = 347 bits (891), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 176/198 (89%), Positives = 187/198 (95%), Gaps = 1/198 (0%)
Query 16 LEISPSMTM-QGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSAD 74
+EISPSMT+ GERLDAVVA+AV GD NALREVLETIRPIVVRYCRARVGTVER GLSAD
Sbjct 1 MEISPSMTIPAGERLDAVVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSAD 60
Query 75 DVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSA 134
DVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRD AYP E++P+RWS
Sbjct 61 DVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSN 120
Query 135 DAGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQ 194
DAGPEQ+AIEADSV+RM+ELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQ
Sbjct 121 DAGPEQLAIEADSVSRMSELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQ 180
Query 195 HRALQRLKDEIVAAGDYA 212
HRAL RLK E++AAGD A
Sbjct 181 HRALSRLKSEMIAAGDCA 198
>gi|296168781|ref|ZP_06850467.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896542|gb|EFG76187.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=191
Score = 344 bits (882), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 172/191 (91%), Positives = 183/191 (96%), Gaps = 0/191 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
MT+QG+RLDAVVA+AVAGDRNALREVLETIRPIVVRYCRARVGTVER GLSADDVAQEVC
Sbjct 1 MTIQGDRLDAVVAKAVAGDRNALREVLETIRPIVVRYCRARVGTVERGGLSADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRD +YP E +PERWS+DAGPEQ
Sbjct 61 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLSYPTEIIPERWSSDAGPEQR 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
AIEADSV+RM+ELLEILPAKQREILILRVVVGLSAEETA+AVGSTTGAVRVAQHRAL RL
Sbjct 121 AIEADSVSRMSELLEILPAKQREILILRVVVGLSAEETASAVGSTTGAVRVAQHRALSRL 180
Query 202 KDEIVAAGDYA 212
K E++AAGD A
Sbjct 181 KSEMIAAGDCA 191
>gi|118466654|ref|YP_883494.1| RNA polymerase sigma factor SigD [Mycobacterium avium 104]
gi|118167941|gb|ABK68838.1| RNA polymerase sigma-70 factor [Mycobacterium avium 104]
Length=192
Score = 337 bits (863), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 169/187 (91%), Positives = 178/187 (96%), Gaps = 0/187 (0%)
Query 26 GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATI 85
GERLDAVVA+AV GD NALREVLETIRPIVVRYCRARVGTVER GLSADDVAQEVCLATI
Sbjct 6 GERLDAVVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSADDVAQEVCLATI 65
Query 86 TALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEA 145
TALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRD AYP E++P+RWS DAGPEQ+AIEA
Sbjct 66 TALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSNDAGPEQLAIEA 125
Query 146 DSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEI 205
DSV+RM+ELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRAL RLK E+
Sbjct 126 DSVSRMSELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALSRLKSEM 185
Query 206 VAAGDYA 212
+AAGD A
Sbjct 186 IAAGDCA 192
>gi|339299839|gb|AEJ51949.1| RNA polymerase sigma factor SigD [Mycobacterium tuberculosis
CCDC5180]
Length=166
Score = 328 bits (840), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 165/166 (99%), Positives = 166/166 (100%), Gaps = 0/166 (0%)
Query 47 VLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIA 106
+LETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIA
Sbjct 1 MLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIA 60
Query 107 AHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRMNELLEILPAKQREIL 166
AHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRMNELLEILPAKQREIL
Sbjct 61 AHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRMNELLEILPAKQREIL 120
Query 167 ILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEIVAAGDYA 212
ILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEIVAAGDYA
Sbjct 121 ILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEIVAAGDYA 166
>gi|342861909|ref|ZP_08718554.1| RNA polymerase sigma factor SigD [Mycobacterium colombiense CECT
3035]
gi|342130726|gb|EGT84030.1| RNA polymerase sigma factor SigD [Mycobacterium colombiense CECT
3035]
Length=181
Score = 324 bits (830), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 162/181 (90%), Positives = 172/181 (96%), Gaps = 0/181 (0%)
Query 32 VVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRY 91
+VA+AV GD NALREVLETIRPIVVRYCRARVGTV+R GLSADDVAQEVCLATITALPRY
Sbjct 1 MVAQAVTGDHNALREVLETIRPIVVRYCRARVGTVDRGGLSADDVAQEVCLATITALPRY 60
Query 92 RDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRM 151
RDRGRPFLAFLYGIAAHKVADAHRAAGRD AYP ET+P+RWS DAGPEQ+AIEADSV+RM
Sbjct 61 RDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPTETIPDRWSNDAGPEQLAIEADSVSRM 120
Query 152 NELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEIVAAGDY 211
+ELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRAL RLK E++AAGD
Sbjct 121 SELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALSRLKSEMIAAGDC 180
Query 212 A 212
A
Sbjct 181 A 181
>gi|254776788|ref|ZP_05218304.1| RNA polymerase sigma factor SigD [Mycobacterium avium subsp.
avium ATCC 25291]
gi|336459755|gb|EGO38673.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length=181
Score = 324 bits (830), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 162/181 (90%), Positives = 172/181 (96%), Gaps = 0/181 (0%)
Query 32 VVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRY 91
+VA+AV GD NALREVLETIRPIVVRYCRARVGTVER GLSADDVAQEVCLATITALPRY
Sbjct 1 MVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSADDVAQEVCLATITALPRY 60
Query 92 RDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRM 151
RDRGRPFLAFLYGIAAHKVADAHRAAGRD AYP E++P+RWS DAGPEQ+AIEADSV+RM
Sbjct 61 RDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSNDAGPEQLAIEADSVSRM 120
Query 152 NELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEIVAAGDY 211
+ELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRAL RLK E++AAGD
Sbjct 121 SELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALSRLKSEMIAAGDC 180
Query 212 A 212
A
Sbjct 181 A 181
>gi|254821000|ref|ZP_05226001.1| RNA polymerase sigma factor SigD [Mycobacterium intracellulare
ATCC 13950]
Length=181
Score = 320 bits (821), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 161/181 (89%), Positives = 171/181 (95%), Gaps = 0/181 (0%)
Query 32 VVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRY 91
+VA+AV GD ALREVLETIRPIVVRYCRARVGTV+R GLSADDVAQEVCLATITALPRY
Sbjct 1 MVAKAVTGDHGALREVLETIRPIVVRYCRARVGTVDRGGLSADDVAQEVCLATITALPRY 60
Query 92 RDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRM 151
RDRGRPFLAFLYGIAAHKVADAHRAAGRD AYP E++PERWS DAGPEQ+AIEADSV+RM
Sbjct 61 RDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPERWSPDAGPEQLAIEADSVSRM 120
Query 152 NELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEIVAAGDY 211
+ELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRAL RLK E++AAGD
Sbjct 121 SELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALSRLKSEMIAAGDC 180
Query 212 A 212
A
Sbjct 181 A 181
>gi|120402517|ref|YP_952346.1| RNA polymerase sigma factor SigD [Mycobacterium vanbaalenii PYR-1]
gi|119955335|gb|ABM12340.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mycobacterium
vanbaalenii PYR-1]
Length=192
Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/192 (82%), Positives = 176/192 (92%), Gaps = 1/192 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
MT+ GERLDAVVAEAVAGDR+ALREVLETIRP+VVRYCRARVGT ERSGLSADDVAQEVC
Sbjct 1 MTISGERLDAVVAEAVAGDRDALREVLETIRPLVVRYCRARVGTAERSGLSADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA ITALPRY+D+GRPFLAF+YGIAAHKVADAHRAAGR++A P + +PER+S +AGPEQ+
Sbjct 61 LAAITALPRYKDQGRPFLAFVYGIAAHKVADAHRAAGRNKADPMDVVPERFSGEAGPEQL 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
AI+++S RM ELL+ILP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL
Sbjct 121 AIDSESSARMAELLQILPEKQREILILRVVVGMSAEETADAVGSTAGAVRVAQHRALTRL 180
Query 202 KDEIVAAG-DYA 212
K EI+AAG D+A
Sbjct 181 KTEIMAAGRDHA 192
>gi|145225488|ref|YP_001136166.1| RNA polymerase sigma factor SigD [Mycobacterium gilvum PYR-GCK]
gi|315445841|ref|YP_004078720.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp.
Spyr1]
gi|145217974|gb|ABP47378.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mycobacterium
gilvum PYR-GCK]
gi|315264144|gb|ADU00886.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp.
Spyr1]
Length=194
Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/194 (81%), Positives = 171/194 (89%), Gaps = 3/194 (1%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
MT+ GERLDAVVAEAVAGDR ALREVLETIRP+VVRYCRARVGT ERSGLSADDVAQEVC
Sbjct 1 MTISGERLDAVVAEAVAGDRGALREVLETIRPLVVRYCRARVGTAERSGLSADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA ITALPRYRD+GRPFLAF+YGIAAHKVADAHRAAGR+RA P + +PER S +AGPEQM
Sbjct 61 LAAITALPRYRDQGRPFLAFVYGIAAHKVADAHRAAGRNRADPMDVVPERLSGEAGPEQM 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
AI+++S RM LL++LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL
Sbjct 121 AIDSESSARMATLLKVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALSRL 180
Query 202 KDEIVAAG---DYA 212
K EI + G DYA
Sbjct 181 KAEITSTGQGRDYA 194
>gi|126433794|ref|YP_001069485.1| RNA polymerase sigma factor SigD [Mycobacterium sp. JLS]
gi|126233594|gb|ABN96994.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mycobacterium
sp. JLS]
Length=192
Score = 297 bits (761), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 148/192 (78%), Positives = 171/192 (90%), Gaps = 1/192 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
MT+ G+RLDAVVAEAVAG+R+ALREVLETIRPIVVRYCRAR+G ERSGLSADDVAQEVC
Sbjct 1 MTLSGDRLDAVVAEAVAGNRDALREVLETIRPIVVRYCRARIGATERSGLSADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA ITALPRY+D+GRPFLAF+YGIAAHK+ADAHRAA R+++ P + +PER+S +AGPEQ+
Sbjct 61 LAAITALPRYKDQGRPFLAFVYGIAAHKIADAHRAASRNKSDPTDVVPERFSGEAGPEQL 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
AI A+S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL
Sbjct 121 AINAESSARMEKLLGVLPDKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180
Query 202 KDEIVAAG-DYA 212
K EI+A G D+A
Sbjct 181 KAEIIATGHDHA 192
>gi|108798135|ref|YP_638332.1| RNA polymerase sigma factor SigD [Mycobacterium sp. MCS]
gi|119867231|ref|YP_937183.1| RNA polymerase sigma factor SigD [Mycobacterium sp. KMS]
gi|108768554|gb|ABG07276.1| RNA polymerase, sigma-24 subunit, RpoE [Mycobacterium sp. MCS]
gi|119693320|gb|ABL90393.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mycobacterium
sp. KMS]
Length=192
Score = 297 bits (760), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 147/192 (77%), Positives = 171/192 (90%), Gaps = 1/192 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
MT+ G+RLDAVVAEAVAG+R+ALREVLETIRPIVVRYCRAR+G ERSGLSADDVAQEVC
Sbjct 1 MTLSGDRLDAVVAEAVAGNRDALREVLETIRPIVVRYCRARIGATERSGLSADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA ITALPRY+D+GRPFLAF+YGIAAHK+ADAHR+A R+++ P + +PER+S +AGPEQ+
Sbjct 61 LAAITALPRYKDQGRPFLAFVYGIAAHKIADAHRSASRNKSDPTDVVPERFSGEAGPEQL 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
AI A+S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL
Sbjct 121 AINAESSARMEKLLGVLPDKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180
Query 202 KDEIVAAG-DYA 212
K EI+A G D+A
Sbjct 181 KAEIIATGHDHA 192
>gi|169630803|ref|YP_001704452.1| RNA polymerase sigma factor SigD [Mycobacterium abscessus ATCC
19977]
gi|169242770|emb|CAM63798.1| Probable RNA polymerase sigma-D factor [Mycobacterium abscessus]
Length=192
Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 141/190 (75%), Positives = 156/190 (83%), Gaps = 0/190 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
MT LD VVA AV GDR+AL EVL IRP+VVRYCRARVGT ERSGLSADDVAQEVC
Sbjct 1 MTSTESGLDDVVAAAVRGDRDALSEVLSAIRPVVVRYCRARVGTAERSGLSADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA I ALPRY+D+GRPFLAF+YGIAAHKVADAHRA RD++ PAE LPE+ AGPEQ
Sbjct 61 LAVIAALPRYQDQGRPFLAFVYGIAAHKVADAHRAMARDKSDPAENLPEQVDRHAGPEQE 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A+ ++S RM LLE+LP KQREILILRVVVGLSAEETA AVGS+ GAVRVAQHRALQ+L
Sbjct 121 ALNSESSRRMQALLEVLPEKQREILILRVVVGLSAEETADAVGSSAGAVRVAQHRALQKL 180
Query 202 KDEIVAAGDY 211
K E+ AGDY
Sbjct 181 KAEMTRAGDY 190
>gi|118470176|ref|YP_885978.1| RNA polymerase sigma factor SigD [Mycobacterium smegmatis str.
MC2 155]
gi|118171463|gb|ABK72359.1| RNA polymerase sigma-70 factor [Mycobacterium smegmatis str.
MC2 155]
Length=192
Score = 274 bits (701), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 151/192 (79%), Positives = 169/192 (89%), Gaps = 1/192 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC
Sbjct 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA ITALPRYRD+GRPFLAF+YGIAAHKVADAHRAA R+RA P + +PER+S DAGPEQ
Sbjct 61 LAAITALPRYRDQGRPFLAFVYGIAAHKVADAHRAAARNRAEPTDVVPERFSLDAGPEQS 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
AI+++S RM +LL +LP KQREILILRVVVG+SAEETA AVGST GAVRVAQHRAL RL
Sbjct 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180
Query 202 KDEIVAAG-DYA 212
K EI+A G D+A
Sbjct 181 KTEIMATGRDHA 192
>gi|54022859|ref|YP_117101.1| RNA polymerase sigma factor SigD [Nocardia farcinica IFM 10152]
gi|54014367|dbj|BAD55737.1| putative sigma factor [Nocardia farcinica IFM 10152]
Length=203
Score = 254 bits (648), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 128/207 (62%), Positives = 157/207 (76%), Gaps = 8/207 (3%)
Query 4 PGVSPGCVRFVTLEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARV 63
P V+PG IS +MT GE LD VA A GDR AL +VLE +RP+VVRYCRAR+
Sbjct 2 PLVTPG--------ISLTMTHTGEELDLAVAAAAQGDRTALAQVLELVRPLVVRYCRARI 53
Query 64 GTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAY 123
G ER LSADDVAQEVCLA +TALPRY+D+GRPF+AF+YGIA+HKVADAHR A R++A
Sbjct 54 GAAERGQLSADDVAQEVCLAVMTALPRYQDQGRPFMAFVYGIASHKVADAHRNAARNKAE 113
Query 124 PAETLPERWSADAGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAV 183
+P+ S D GPEQ A+E+++ +MN LL LP K REIL+LR+V+GLSAEETAAAV
Sbjct 114 AMAEVPDVISTDQGPEQRALESETSRQMNRLLATLPEKHREILVLRLVMGLSAEETAAAV 173
Query 184 GSTTGAVRVAQHRALQRLKDEIVAAGD 210
GST GA+RVAQHRAL +LK ++ AG+
Sbjct 174 GSTAGAIRVAQHRALAKLKSQVARAGE 200
>gi|325675534|ref|ZP_08155218.1| RNA polymerase sigma-70 factor [Rhodococcus equi ATCC 33707]
gi|325553505|gb|EGD23183.1| RNA polymerase sigma-70 factor [Rhodococcus equi ATCC 33707]
Length=192
Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/189 (66%), Positives = 152/189 (81%), Gaps = 0/189 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
M+ GE L++ VA A GDRNAL +VL +IRP+VVRYCRARVG ER LSADDVAQEVC
Sbjct 1 MSNTGEELNSAVAAAAQGDRNALSQVLASIRPLVVRYCRARVGAAERGQLSADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA +TALPRY+D+GRPF+AF+YGIAAHKVADAHR A R+++ P +P+ SAD PE+
Sbjct 61 LAVMTALPRYQDQGRPFMAFVYGIAAHKVADAHRNAARNKSDPVAEVPDVVSADDSPEER 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A+ +++ ++N LL+ LP K REIL+LR+VVGLSAEETAAAVGST GAVRVAQHRAL +L
Sbjct 121 ALNSETSRQVNALLQTLPEKHREILVLRLVVGLSAEETAAAVGSTAGAVRVAQHRALAKL 180
Query 202 KDEIVAAGD 210
K E+ AG+
Sbjct 181 KKEVTKAGE 189
>gi|111023159|ref|YP_706131.1| RNA polymerase sigma factor SigD [Rhodococcus jostii RHA1]
gi|226365665|ref|YP_002783448.1| RNA polymerase sigma factor SigD [Rhodococcus opacus B4]
gi|110822689|gb|ABG97973.1| sigma factor, sigma 70 type, group 4 (ECF) [Rhodococcus jostii
RHA1]
gi|226244155|dbj|BAH54503.1| RNA polymerase ECF-type sigma factor SigD [Rhodococcus opacus
B4]
Length=192
Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/189 (66%), Positives = 149/189 (79%), Gaps = 0/189 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
MT E LD+ VA A GDR AL VLE IRP+VVRYCRARVG ER LSADDVAQEVC
Sbjct 1 MTNTSEELDSAVAAATQGDRAALALVLENIRPLVVRYCRARVGAAERGQLSADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA +TALPRY D+GRPF+AF+YGIAAHKVADAHR + R+++ P +P+ + D GPEQ
Sbjct 61 LAVMTALPRYEDQGRPFMAFVYGIAAHKVADAHRNSARNKSEPVAEVPDVVANDDGPEQR 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A+++++ +MNELL LP K REILILR+VVG+SAEETAAAVGST GAVRVAQHRA+ +L
Sbjct 121 ALDSEASRQMNELLSTLPEKHREILILRLVVGMSAEETAAAVGSTAGAVRVAQHRAIAKL 180
Query 202 KDEIVAAGD 210
K E+ AG+
Sbjct 181 KKEVTRAGE 189
>gi|296138633|ref|YP_003645876.1| ECF subfamily RNA polymerase sigma-24 subunit [Tsukamurella paurometabola
DSM 20162]
gi|296026767|gb|ADG77537.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Tsukamurella
paurometabola DSM 20162]
Length=190
Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/189 (66%), Positives = 149/189 (79%), Gaps = 0/189 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
M + GE LD V EA GDR+AL +VL++IRP+VVRYCRARVG ER LSA+D+AQEVC
Sbjct 1 MILTGEELDRAVREAARGDRSALADVLDSIRPLVVRYCRARVGGGERHSLSAEDIAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
+A + ALPRY D+GRPF+AF+YGIAAHKVAD RAA R+++ P +PER S D+GPE
Sbjct 61 MAVMMALPRYEDQGRPFMAFVYGIAAHKVADGFRAATRNKSDPVSEMPERASLDSGPEVT 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A+E+++ RMN LL LP KQREILILRVVVGLSAEETA AVG T GAVRVAQHRAL +L
Sbjct 121 ALESEANRRMNRLLGTLPEKQREILILRVVVGLSAEETAEAVGGTAGAVRVAQHRALAKL 180
Query 202 KDEIVAAGD 210
K++I G+
Sbjct 181 KNQIAKEGE 189
>gi|226305419|ref|YP_002765377.1| RNA polymerase ECF-type sigma factor SigD [Rhodococcus erythropolis
PR4]
gi|229489598|ref|ZP_04383461.1| RNA polymerase sigma factor SigD [Rhodococcus erythropolis SK121]
gi|226184534|dbj|BAH32638.1| putative RNA polymerase ECF-type sigma factor SigD [Rhodococcus
erythropolis PR4]
gi|229323695|gb|EEN89453.1| RNA polymerase sigma factor SigD [Rhodococcus erythropolis SK121]
Length=192
Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/189 (65%), Positives = 148/189 (79%), Gaps = 0/189 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
MT + LD VA A GDR AL VLE IRP+VVRYCR RVG ER LSADDVAQEVC
Sbjct 1 MTNTSDELDTAVAAAAQGDRTALALVLENIRPMVVRYCRGRVGAAERGHLSADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA +TALPRY+D+GRPF+AF+YGIAAHKVADAHR++ R+++ P +P+ + D GPEQ
Sbjct 61 LAVMTALPRYQDQGRPFMAFVYGIAAHKVADAHRSSARNKSEPVSEVPDVIALDDGPEQR 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A++++S +M+ELL LP K REILILR+VVG+SAEETA AVGST GAVRVAQHRA+ +L
Sbjct 121 ALDSESSRQMHELLGTLPEKHREILILRLVVGMSAEETAVAVGSTAGAVRVAQHRAIAKL 180
Query 202 KDEIVAAGD 210
K E+ AG+
Sbjct 181 KKEVTKAGE 189
>gi|256380524|ref|YP_003104184.1| ECF subfamily RNA polymerase sigma-24 subunit [Actinosynnema
mirum DSM 43827]
gi|255924827|gb|ACU40338.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Actinosynnema
mirum DSM 43827]
Length=190
Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/186 (68%), Positives = 148/186 (80%), Gaps = 0/186 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
MT G+ LDA V AV GDR+A+ +L +IRP+VVRYCRARVG ERS SADDVAQEVC
Sbjct 1 MTNLGDGLDAEVGAAVDGDRHAIERLLASIRPLVVRYCRARVGRQERSFASADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA +TALP YRD+GRPFLAF+YGIAAHKVADAHR+A R+R+ P +P+ +AGPEQ
Sbjct 61 LAVLTALPSYRDQGRPFLAFVYGIAAHKVADAHRSAARNRSEPVPEVPDAPETEAGPEQR 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A++ + RM +LL+ILP KQREIL+LRVVVGLSAEETA AVGST GAVRVAQHRAL RL
Sbjct 121 AMQGELSGRMAQLLKILPEKQREILLLRVVVGLSAEETATAVGSTPGAVRVAQHRALARL 180
Query 202 KDEIVA 207
+ + A
Sbjct 181 RKALAA 186
>gi|291003916|ref|ZP_06561889.1| RNA polymerase, sigma-24 subunit, ECF subfamily protein [Saccharopolyspora
erythraea NRRL 2338]
Length=187
Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/182 (68%), Positives = 147/182 (81%), Gaps = 0/182 (0%)
Query 26 GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATI 85
G+ LDA+V+ AV GDR ++ +L IRP+VVRYCRARVG ERS SADDVAQEVCLA +
Sbjct 2 GDGLDALVSAAVDGDRQSIERLLAEIRPLVVRYCRARVGRNERSFASADDVAQEVCLAVL 61
Query 86 TALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEA 145
TALP YRD+GRPFLAF+YGIAAHKVADAHRA+ R+R+ P +P+ ++AGPEQ A++
Sbjct 62 TALPSYRDQGRPFLAFVYGIAAHKVADAHRASARNRSEPVADVPDTPESEAGPEQRAMQG 121
Query 146 DSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEI 205
+ RM +LL +LPAKQREIL+LRVVVGLSAEETA AVGST GAVRVAQHRAL RL+ +
Sbjct 122 ELSGRMAQLLRVLPAKQREILLLRVVVGLSAEETAEAVGSTPGAVRVAQHRALARLRKTL 181
Query 206 VA 207
A
Sbjct 182 SA 183
>gi|257054541|ref|YP_003132373.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
viridis DSM 43017]
gi|256584413|gb|ACU95546.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
viridis DSM 43017]
Length=190
Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 123/186 (67%), Positives = 143/186 (77%), Gaps = 0/186 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
MT G+ LD VA AV GD A+ +L IRP+VVRYCRARVG ERS SADDVAQEVC
Sbjct 1 MTNVGDGLDESVAAAVEGDPQAVERLLAAIRPLVVRYCRARVGRQERSFTSADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA +TALP YRD+GRPFLAF+YGIA HKVADAHRAA R+RA P +P+ D GPEQ
Sbjct 61 LAVLTALPSYRDQGRPFLAFVYGIAQHKVADAHRAASRNRAEPVADIPDEIEGDIGPEQR 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A+ + RM++LL++LP KQREI++LRVVVGLSAEETA AVGST GAVRVAQHRAL RL
Sbjct 121 ALRGELNERMSQLLQVLPEKQREIVVLRVVVGLSAEETAEAVGSTPGAVRVAQHRALARL 180
Query 202 KDEIVA 207
+ + A
Sbjct 181 RKALAA 186
>gi|331699102|ref|YP_004335341.1| ECF subfamily RNA polymerase sigma-24 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326953791|gb|AEA27488.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Pseudonocardia
dioxanivorans CB1190]
Length=190
Score = 224 bits (571), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 118/184 (65%), Positives = 140/184 (77%), Gaps = 0/184 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
M+ + LD +VA A+AGDR A+ VL IRP+VVRYCRAR+G V+RS +SADDVAQEVC
Sbjct 1 MSEPTDVLDELVASAMAGDRRAVERVLAIIRPLVVRYCRARLGRVDRSSVSADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA +TALP YR +GRPFLAF+YGIA+HKV DAHRAA R+R+ P +P+ GPEQ
Sbjct 61 LAVLTALPGYRVQGRPFLAFVYGIASHKVIDAHRAATRNRSEPVADVPDAVEVADGPEQR 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A+ + M LLE LP KQREIL+LRVVVGLSAEETA AVGST GAVRVAQHRAL RL
Sbjct 121 ALRVELSGEMGRLLEQLPEKQREILVLRVVVGLSAEETAEAVGSTPGAVRVAQHRALARL 180
Query 202 KDEI 205
+ +
Sbjct 181 RKSM 184
>gi|333921687|ref|YP_004495268.1| RNA polymerase sigma-70 factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333483908|gb|AEF42468.1| RNA polymerase sigma-70 factor [Amycolicicoccus subflavus DQS3-9A1]
Length=220
Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/208 (58%), Positives = 144/208 (70%), Gaps = 0/208 (0%)
Query 3 DPGVSPGCVRFVTLEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRAR 62
+ GV VT +M M E L V A GDR AL VLE IRP VVRYCRAR
Sbjct 10 EKGVKEAAQASVTPSPHLAMKMSDEDLSLAVVAAGRGDRVALSTVLEAIRPAVVRYCRAR 69
Query 63 VGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRA 122
VG ER +SADDVAQEVC+A +TALPRY+D+GRPF++F+YGIAAHKVADAHR++ R+R
Sbjct 70 VGIGERGHVSADDVAQEVCMAVMTALPRYQDQGRPFMSFVYGIAAHKVADAHRSSARNRQ 129
Query 123 YPAETLPERWSADAGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAA 182
P E +P+ S D GPE A+ ++S R+ ELL L +QREILILRV+ G+SA+E A
Sbjct 130 DPTEDMPDFASGDDGPEDHALLSESSRRVQELLNSLSPEQREILILRVIEGVSAQEAAEI 189
Query 183 VGSTTGAVRVAQHRALQRLKDEIVAAGD 210
VGST GAVRVAQHRAL +LK + GD
Sbjct 190 VGSTAGAVRVAQHRALAKLKKAMGRVGD 217
>gi|262201670|ref|YP_003272878.1| sigma-70 family RNA polymerase sigma factor [Gordonia bronchialis
DSM 43247]
gi|262085017|gb|ACY20985.1| RNA polymerase sigma factor, sigma-70 family [Gordonia bronchialis
DSM 43247]
Length=195
Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 112/188 (60%), Positives = 142/188 (76%), Gaps = 0/188 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
M + G LD V A GDR AL VLE+++ ++RYCR R+G ER SADD+AQE
Sbjct 1 MKLTGGELDDAVRAARQGDRAALTSVLESVQDPILRYCRGRIGAGERHLFSADDIAQEAL 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
+A +TALPRY+D+G+PF+AF+YGIAAHKVADA R AGR +A P + +PE + GPEQ+
Sbjct 61 MAVMTALPRYQDQGKPFMAFVYGIAAHKVADALRVAGRVKADPTDDVPEVTTLAGGPEQL 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A++AD+ RM LLEILP KQRE+L+LR+VVG+SAEETA AVGST GAVRVAQHRAL +L
Sbjct 121 ALDADASRRMRALLEILPEKQREVLVLRLVVGMSAEETADAVGSTPGAVRVAQHRALAKL 180
Query 202 KDEIVAAG 209
K+E+ G
Sbjct 181 KNELKRTG 188
>gi|325000820|ref|ZP_08121932.1| RNA polymerase sigma factor, sigma-70 family protein [Pseudonocardia
sp. P1]
Length=176
Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/166 (67%), Positives = 133/166 (81%), Gaps = 1/166 (0%)
Query 37 VAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGR 96
+AGDR+A+ VL IRP+VVRYCRAR+GT +R +SADDVAQEVC+A +TALP YR +GR
Sbjct 1 MAGDRSAVERVLTMIRPLVVRYCRARLGT-DRGSVSADDVAQEVCVAVLTALPGYRVQGR 59
Query 97 PFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRMNELLE 156
PFLAF+YGIA+HKV DAHRAA R+R+ P +PER GPE A++ + M+ LLE
Sbjct 60 PFLAFVYGIASHKVIDAHRAASRNRSEPVADVPERMETSDGPETRALQVELSEEMSRLLE 119
Query 157 ILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLK 202
+LP K REI++LRVVVGLSAEETAAAVGST GAVRVAQHRAL RL+
Sbjct 120 VLPEKHREIIVLRVVVGLSAEETAAAVGSTPGAVRVAQHRALSRLR 165
>gi|300788221|ref|YP_003768512.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis
mediterranei U32]
gi|299797735|gb|ADJ48110.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis
mediterranei U32]
gi|340529806|gb|AEK45011.1| RNA polymerase sigma-70 factor, ECF subfamily protein [Amycolatopsis
mediterranei S699]
Length=248
Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 114/168 (68%), Positives = 131/168 (78%), Gaps = 0/168 (0%)
Query 28 RLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITA 87
R D VA A+AGD A+ +L T+RP+VVRYCRARVG ERS SADDVAQEVCLA +TA
Sbjct 66 RHDEPVAAAIAGDETAIARLLATVRPLVVRYCRARVGRHERSFTSADDVAQEVCLAVLTA 125
Query 88 LPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADS 147
LP Y D+GRPFLAF+YGIA HKVADAHRAA R+R P +P+ S GPEQ A+ +
Sbjct 126 LPSYHDQGRPFLAFVYGIAQHKVADAHRAAARNRTDPVPEVPDGVSESVGPEQRALRFEL 185
Query 148 VTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 195
R+ LL+ILPAKQREI++LRVVVGLSAEETAAAVGST GAVRVAQH
Sbjct 186 NERLARLLDILPAKQREIVVLRVVVGLSAEETAAAVGSTPGAVRVAQH 233
>gi|326381881|ref|ZP_08203574.1| RNA polymerase sigma factor SigD [Gordonia neofelifaecis NRRL
B-59395]
gi|326199307|gb|EGD56488.1| RNA polymerase sigma factor SigD [Gordonia neofelifaecis NRRL
B-59395]
Length=191
Score = 218 bits (554), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/189 (59%), Positives = 139/189 (74%), Gaps = 0/189 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
M + GE L V A GDR AL VLE++R V+RYCR R+G+ ER SADDVAQEV
Sbjct 1 MKLTGEALGQAVRSAADGDRAALTSVLESVREPVLRYCRGRIGSGERHLFSADDVAQEVL 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
+A +TALPRY D+GRPF+AF+YGIA+HKVADA R+A R ++ P E +P+ GPEQ
Sbjct 61 MAVMTALPRYEDQGRPFMAFVYGIASHKVADAMRSAARVKSDPVEDVPDSLDFGNGPEQA 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A+E+D+ +M +LL LP KQREIL+LR+VVGLSAEETA VGS+ GAVRVAQHRAL +L
Sbjct 121 ALESDASRQMRDLLSTLPEKQREILVLRLVVGLSAEETAEMVGSSPGAVRVAQHRALTKL 180
Query 202 KDEIVAAGD 210
K ++ G+
Sbjct 181 KKLMIPGGE 189
>gi|343928276|ref|ZP_08767729.1| RNA polymerase ECF-type sigma factor SigD [Gordonia alkanivorans
NBRC 16433]
gi|343761806|dbj|GAA14655.1| RNA polymerase ECF-type sigma factor SigD [Gordonia alkanivorans
NBRC 16433]
Length=188
Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 107/183 (59%), Positives = 135/183 (74%), Gaps = 0/183 (0%)
Query 29 LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITAL 88
+D V A GDR AL VLE+++ ++RYCR R+G ER SADD+AQE +A +TAL
Sbjct 1 MDDAVRAAGQGDRAALTSVLESVQEPILRYCRGRIGIGERHLFSADDIAQEALMAVMTAL 60
Query 89 PRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSV 148
PRYRD+G+PF+AF+YGI +HKVADA R A R +A P E +PE GPEQ A++ADS
Sbjct 61 PRYRDQGKPFMAFVYGITSHKVADAMRVAARVKADPVEDVPEVGHVTGGPEQSALDADSS 120
Query 149 TRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEIVAA 208
RM LL+ILP KQRE+L+LR+VVG+SAEETA +GST GAVRVAQHRAL +LKDE+
Sbjct 121 RRMRALLDILPEKQREVLVLRLVVGMSAEETAQMIGSTAGAVRVAQHRALAKLKDELKRT 180
Query 209 GDY 211
G +
Sbjct 181 GGH 183
>gi|134103141|ref|YP_001108802.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL
2338]
gi|133915764|emb|CAM05877.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL
2338]
Length=158
Score = 214 bits (545), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 108/154 (71%), Positives = 127/154 (83%), Gaps = 0/154 (0%)
Query 54 IVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADA 113
+VVRYCRARVG ERS SADDVAQEVCLA +TALP YRD+GRPFLAF+YGIAAHKVADA
Sbjct 1 MVVRYCRARVGRNERSFASADDVAQEVCLAVLTALPSYRDQGRPFLAFVYGIAAHKVADA 60
Query 114 HRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVG 173
HRA+ R+R+ P +P+ ++AGPEQ A++ + RM +LL +LPAKQREIL+LRVVVG
Sbjct 61 HRASARNRSEPVADVPDTPESEAGPEQRAMQGELSGRMAQLLRVLPAKQREILLLRVVVG 120
Query 174 LSAEETAAAVGSTTGAVRVAQHRALQRLKDEIVA 207
LSAEETA AVGST GAVRVAQHRAL RL+ + A
Sbjct 121 LSAEETAEAVGSTPGAVRVAQHRALARLRKTLSA 154
>gi|319950730|ref|ZP_08024626.1| RNA polymerase sigma factor SigD [Dietzia cinnamea P4]
gi|319435608|gb|EFV90832.1| RNA polymerase sigma factor SigD [Dietzia cinnamea P4]
Length=186
Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/182 (61%), Positives = 137/182 (76%), Gaps = 0/182 (0%)
Query 29 LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITAL 88
++ VA+AV GDR A VLE +RP VVRYCR+RVG ER+ LSADDVAQEV +A ++AL
Sbjct 1 MELAVADAVKGDRAAAARVLELVRPGVVRYCRSRVGGSERANLSADDVAQEVLIAVLSAL 60
Query 89 PRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSV 148
P YRD+GRPF+AF+YGIAAHKVADAHR A R+++ P E LPE S D GPE ++ +
Sbjct 61 PGYRDQGRPFMAFVYGIAAHKVADAHRGAARNKSDPVEYLPEVLSTDTGPEDHVLDGEVS 120
Query 149 TRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEIVAA 208
++ LL+ LP KQREI+ LRVVVGLSAEETA V ST GAVRVAQHRA+++L+ I
Sbjct 121 RAVSRLLDTLPEKQREIIRLRVVVGLSAEETAEIVDSTAGAVRVAQHRAMKQLRARIEQD 180
Query 209 GD 210
G+
Sbjct 181 GE 182
>gi|302524083|ref|ZP_07276425.1| RNA polymerase sigma factor [Streptomyces sp. AA4]
gi|302432978|gb|EFL04794.1| RNA polymerase sigma factor [Streptomyces sp. AA4]
Length=190
Score = 208 bits (529), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/186 (66%), Positives = 141/186 (76%), Gaps = 0/186 (0%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
M G+ LD VA AV GD A+ +L IRP+VVRYCRARVG ERS SADDVAQEVC
Sbjct 1 MATVGDGLDEPVAAAVEGDPQAVERLLAAIRPLVVRYCRARVGRQERSFASADDVAQEVC 60
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA +TALP YRD+GRPFLAF+YGIA HKVADAHRAA R+RA P +P+ GPEQ
Sbjct 61 LAVLTALPSYRDQGRPFLAFVYGIAQHKVADAHRAAARNRAEPVAEIPDEIEGGVGPEQR 120
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A++ + RM +LL++LP KQREI++LRVVVGLSAEETA AVGST GAVRVAQHRAL RL
Sbjct 121 ALQGELNERMAQLLQVLPDKQREIVVLRVVVGLSAEETAEAVGSTPGAVRVAQHRALARL 180
Query 202 KDEIVA 207
+ + A
Sbjct 181 RKVLAA 186
>gi|256379190|ref|YP_003102850.1| ECF subfamily RNA polymerase sigma-24 subunit [Actinosynnema
mirum DSM 43827]
gi|255923493|gb|ACU39004.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Actinosynnema
mirum DSM 43827]
Length=216
Score = 207 bits (527), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 107/170 (63%), Positives = 131/170 (78%), Gaps = 3/170 (1%)
Query 33 VAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYR 92
V AVAGDR A+ +L +RP++V+YCRARVG + +ADDVAQEVCLA + ALP Y+
Sbjct 38 VTAAVAGDRAAVERLLGVLRPLIVKYCRARVGG---AYATADDVAQEVCLAVLKALPNYQ 94
Query 93 DRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRMN 152
D+GRPFLAF+YGIAAHKVAD HR A R+RA P LP++ + AGPE A++ + +M
Sbjct 95 DQGRPFLAFVYGIAAHKVADVHRFAARNRAEPVAELPDKPESSAGPEARALQGEVSEQMA 154
Query 153 ELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLK 202
ELL +LP KQREIL+LRVVVG+SAEETA AV ST GAVRVAQHRAL RL+
Sbjct 155 ELLRVLPEKQREILLLRVVVGMSAEETAHAVRSTPGAVRVAQHRALARLR 204
>gi|256379786|ref|YP_003103446.1| ECF subfamily RNA polymerase sigma-24 subunit [Actinosynnema
mirum DSM 43827]
gi|255924089|gb|ACU39600.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Actinosynnema
mirum DSM 43827]
Length=197
Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/157 (71%), Positives = 127/157 (81%), Gaps = 0/157 (0%)
Query 46 EVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGI 105
E+L +RP+VVRYCRARVG ER+ SADDVAQEVCLA +TALP YRD+GRPFLAF+YGI
Sbjct 32 ELLAVVRPVVVRYCRARVGRQERTFASADDVAQEVCLAVLTALPSYRDQGRPFLAFVYGI 91
Query 106 AAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRMNELLEILPAKQREI 165
AAHKVADAHRAA R+RA P LP+ S +AGPE A+ + RM LL +LP KQREI
Sbjct 92 AAHKVADAHRAAARNRAEPVPELPDSVSTEAGPETRALHGELSDRMARLLRVLPDKQREI 151
Query 166 LILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLK 202
L+LRVVVGLSAEETA AVGST GAVRVAQHRAL +L+
Sbjct 152 LVLRVVVGLSAEETAQAVGSTPGAVRVAQHRALAKLQ 188
>gi|255323977|ref|ZP_05365103.1| RNA polymerase sigma factor SigD [Corynebacterium tuberculostearicum
SK141]
gi|255299157|gb|EET78448.1| RNA polymerase sigma factor SigD [Corynebacterium tuberculostearicum
SK141]
Length=190
Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/191 (54%), Positives = 134/191 (71%), Gaps = 2/191 (1%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
M+ + + L +V AV G R AL+EVL I P V+RYCRAR+G + +A+DVAQE+C
Sbjct 1 MSDKEQELADLVPHAVDGSRRALQEVLRIIHPQVLRYCRARIGGGRQP--TAEDVAQEIC 58
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA T++ Y D+GRPF+A++YGIA +KV DAHRA GRD++ P E +PE + +A PE+
Sbjct 59 LAVATSIGSYEDKGRPFMAYVYGIAFNKVTDAHRAMGRDKSTPTEEIPEDSAHEATPEEW 118
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A+EAD RM LL+ L K + I+ILRV GLSAEETA VGST GAVRVAQHRAL +L
Sbjct 119 ALEADGSNRMRALLDTLSDKAKNIVILRVFNGLSAEETAEIVGSTPGAVRVAQHRALAQL 178
Query 202 KDEIVAAGDYA 212
+ + AA + A
Sbjct 179 RKTLQAAQETA 189
>gi|311739988|ref|ZP_07713822.1| RNA polymerase sigma-70 factor [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305061|gb|EFQ81130.1| RNA polymerase sigma-70 factor [Corynebacterium pseudogenitalium
ATCC 33035]
Length=196
Score = 191 bits (484), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 101/186 (55%), Positives = 131/186 (71%), Gaps = 2/186 (1%)
Query 27 ERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATIT 86
+ L +V AV G R AL+EVL I P V+RYCRAR+G + +A+DVAQE+CLA T
Sbjct 12 QELADLVPHAVDGSRRALQEVLRIIHPQVLRYCRARIGGGRQP--TAEDVAQEICLAVAT 69
Query 87 ALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEAD 146
++ Y D+GRPF+A++YGIA +KV DAHRA GRD++ P E +PE + +A PE+ A+EAD
Sbjct 70 SIGSYEDKGRPFMAYVYGIAFNKVTDAHRAMGRDKSTPTEEIPEDSANEATPEEWALEAD 129
Query 147 SVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEIV 206
RM LL+ L K + I+ILRV GLSAEETA VGST GAVRVAQHRAL +L+ +
Sbjct 130 GSNRMRALLDTLSDKAKNIVILRVFNGLSAEETAEIVGSTPGAVRVAQHRALAQLRKTLQ 189
Query 207 AAGDYA 212
AA + A
Sbjct 190 AAQETA 195
>gi|344045964|gb|EGV41633.1| RNA polymerase sigma factor SigD [Corynebacterium glutamicum
S9114]
Length=188
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/177 (55%), Positives = 128/177 (73%), Gaps = 2/177 (1%)
Query 29 LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITAL 88
L +V +A AGDR AL+ ++E I PIV+RY RAR+G + +A+DVAQE+CLA T++
Sbjct 8 LATLVPQATAGDRRALQRIMEIIHPIVLRYARARIGGGRQP--TAEDVAQEICLAVATSI 65
Query 89 PRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSV 148
+ D+GRPF+AF+YGIA++KVADAHRA RD++ P E +PE PE A+ +D
Sbjct 66 KNFVDQGRPFMAFVYGIASNKVADAHRAMSRDKSTPIEEVPETSPDTFTPEDFALVSDGS 125
Query 149 TRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEI 205
R+ ELL++L K R+ILILRV+VGLSAEETA VGST GAVRVAQHRAL L+ +
Sbjct 126 NRVRELLDLLSEKARDILILRVIVGLSAEETAEMVGSTPGAVRVAQHRALTTLRSTL 182
>gi|227502737|ref|ZP_03932786.1| RNA polymerase sigma factor SigD [Corynebacterium accolens ATCC
49725]
gi|306835318|ref|ZP_07468344.1| RNA polymerase sigma-70 factor [Corynebacterium accolens ATCC
49726]
gi|227076467|gb|EEI14430.1| RNA polymerase sigma factor SigD [Corynebacterium accolens ATCC
49725]
gi|304568797|gb|EFM44336.1| RNA polymerase sigma-70 factor [Corynebacterium accolens ATCC
49726]
Length=190
Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/181 (54%), Positives = 127/181 (71%), Gaps = 2/181 (1%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
M+ + + L +V A G R AL+ +L+ I P V+RYCRAR+G + +A+DV QE+C
Sbjct 1 MSDKDKELAELVPLAAGGSRRALQSILQIIHPQVLRYCRARIGGGRQP--TAEDVTQEIC 58
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA T++ Y D+GRPF+A++YGIA +KV DAHRA GRDR+ P E LPE + +A PE+
Sbjct 59 LAVATSIDSYEDKGRPFMAYVYGIAFNKVTDAHRAMGRDRSTPTEELPESTANEATPEEW 118
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A+E D RM LL+ L K + I+ILRV VGLSAEETA VGST GAVRVAQHRAL +L
Sbjct 119 ALENDGSNRMRALLDTLSDKAKNIVILRVFVGLSAEETADIVGSTPGAVRVAQHRALAQL 178
Query 202 K 202
+
Sbjct 179 R 179
>gi|19551834|ref|NP_599836.1| RNA polymerase sigma factor SigD [Corynebacterium glutamicum
ATCC 13032]
gi|62389491|ref|YP_224893.1| RNA polymerase sigma factor SigD [Corynebacterium glutamicum
ATCC 13032]
gi|21323365|dbj|BAB97993.1| DNA-directed RNA polymerase specialized sigma subunits, sigma24
homologs [Corynebacterium glutamicum ATCC 13032]
gi|41324825|emb|CAF19307.1| PUTATIVE RNA POLYMERASE SIGMA FACTOR, ECF family [Corynebacterium
glutamicum ATCC 13032]
Length=188
Score = 187 bits (475), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 96/171 (57%), Positives = 126/171 (74%), Gaps = 2/171 (1%)
Query 32 VVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRY 91
+V +A AGDR AL+ ++E I PIV+RY RAR+G + +A+DVAQE+CLA T++ +
Sbjct 11 LVPQATAGDRRALQRIMEIIHPIVLRYARARIGGGRQP--TAEDVAQEICLAVATSIRNF 68
Query 92 RDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRM 151
D+GRPF+AF+YGIA++KVADAHRA RD++ P E +PE PE A+ +D R+
Sbjct 69 VDQGRPFMAFVYGIASNKVADAHRAMSRDKSTPIEEVPETSPDTFTPEDFALVSDGSNRV 128
Query 152 NELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLK 202
ELL++L K R+ILILRV+VGLSAEETA VGST GAVRVAQHRAL L+
Sbjct 129 RELLDLLSEKARDILILRVIVGLSAEETAEMVGSTPGAVRVAQHRALTTLR 179
>gi|302528576|ref|ZP_07280918.1| hypothetical protein SSMG_04958 [Streptomyces sp. AA4]
gi|302437471|gb|EFL09287.1| hypothetical protein SSMG_04958 [Streptomyces sp. AA4]
Length=383
Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/177 (56%), Positives = 128/177 (73%), Gaps = 1/177 (0%)
Query 29 LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITAL 88
D V AV GD +A +++L ++P++VRYCRAR+G + SADDVAQEVCLA +TAL
Sbjct 203 FDGPVRAAVDGDPDATQDLLAAVQPLIVRYCRARLGGADAYS-SADDVAQEVCLALLTAL 261
Query 89 PRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSV 148
P YR++GRPFLAF+YGIA HKVADAHRA R+R LPE GPE+ A+ ++
Sbjct 262 PGYRNQGRPFLAFVYGIAQHKVADAHRAHARNRTETMAELPEAIDLADGPEERALRSELN 321
Query 149 TRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEI 205
+ LL++LP +QREI++LR+VVGLSAEE A AV ST GAVRVAQ+RAL RL+ +
Sbjct 322 RHLARLLQLLPERQREIVLLRIVVGLSAEEAAEAVSSTPGAVRVAQYRALLRLRSAL 378
>gi|262183837|ref|ZP_06043258.1| RNA polymerase sigma factor SigD [Corynebacterium aurimucosum
ATCC 700975]
Length=205
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/170 (56%), Positives = 122/170 (72%), Gaps = 2/170 (1%)
Query 36 AVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRG 95
AV G R AL+ ++ I P V+RYCRAR+G + +A+DVAQE+CLA T++ Y+D+G
Sbjct 32 AVDGSRCALQRIMRIIHPQVLRYCRARIGGHRQP--TAEDVAQEICLAVATSIGTYKDKG 89
Query 96 RPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRMNELL 155
RPF+A++YGIAAHKV DAHRA RD +P E LPE + DA PE+ A+E D R+ +L
Sbjct 90 RPFMAYVYGIAAHKVTDAHRALSRDHTHPTEDLPEDAAQDATPEESALEVDGSNRVRAML 149
Query 156 EILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEI 205
+ L K R+I+ILRV VGLSAEETA V ST GAVRVAQHRAL +L+ +
Sbjct 150 DTLSDKARDIIILRVFVGLSAEETAEIVESTPGAVRVAQHRALAQLRKSL 199
>gi|227832306|ref|YP_002834013.1| ECF-family sigma factor D [Corynebacterium aurimucosum ATCC 700975]
gi|227453322|gb|ACP32075.1| ECF-family sigma factor D [Corynebacterium aurimucosum ATCC 700975]
Length=203
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/170 (56%), Positives = 122/170 (72%), Gaps = 2/170 (1%)
Query 36 AVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRG 95
AV G R AL+ ++ I P V+RYCRAR+G + +A+DVAQE+CLA T++ Y+D+G
Sbjct 30 AVDGSRCALQRIMRIIHPQVLRYCRARIGGHRQP--TAEDVAQEICLAVATSIGTYKDKG 87
Query 96 RPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRMNELL 155
RPF+A++YGIAAHKV DAHRA RD +P E LPE + DA PE+ A+E D R+ +L
Sbjct 88 RPFMAYVYGIAAHKVTDAHRALSRDHTHPTEDLPEDAAQDATPEESALEVDGSNRVRAML 147
Query 156 EILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEI 205
+ L K R+I+ILRV VGLSAEETA V ST GAVRVAQHRAL +L+ +
Sbjct 148 DTLSDKARDIIILRVFVGLSAEETAEIVESTPGAVRVAQHRALAQLRKSL 197
>gi|227505282|ref|ZP_03935331.1| RNA polymerase sigma factor SigD [Corynebacterium striatum ATCC
6940]
gi|227198115|gb|EEI78163.1| RNA polymerase sigma factor SigD [Corynebacterium striatum ATCC
6940]
Length=187
Score = 184 bits (468), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/184 (52%), Positives = 128/184 (70%), Gaps = 2/184 (1%)
Query 22 MTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 81
M+ + L +V A+ G+R AL+ ++ I P V+RYCRAR+G + + +DV QE+C
Sbjct 1 MSDTDKELADLVPLAIDGNRRALQSIMRIIHPQVLRYCRARIGGGRQP--TPEDVTQEIC 58
Query 82 LATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQM 141
LA T++ Y D+GRPF+A++YGIA +KV DAHRA GRD++ P E +PE + +A PE+
Sbjct 59 LAVATSIGSYEDKGRPFMAYVYGIAFNKVTDAHRAMGRDQSNPTEEVPEGATKEANPEET 118
Query 142 AIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
A+ AD R+ ELL+ L K R I+ILRV VGLSAEETA VGST GAVRVAQHRAL +L
Sbjct 119 ALVADGSNRVRELLDTLSDKARNIIILRVFVGLSAEETAEIVGSTPGAVRVAQHRALSQL 178
Query 202 KDEI 205
+ I
Sbjct 179 RKAI 182
>gi|25027161|ref|NP_737215.1| RNA polymerase sigma factor SigD [Corynebacterium efficiens YS-314]
gi|23492442|dbj|BAC17415.1| putative RNA polymerase sigma factor [Corynebacterium efficiens
YS-314]
Length=190
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/171 (55%), Positives = 125/171 (74%), Gaps = 2/171 (1%)
Query 32 VVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRY 91
+V +A AGDR AL+ ++E I P+V+RY RAR+G + + +DVAQE+CLA T++ +
Sbjct 13 LVPQATAGDRRALQRIMEIIHPVVLRYARARIGGGRQP--TPEDVAQEICLAVATSIHNF 70
Query 92 RDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRM 151
D+GRPF+AF+YGIA++KVADAHRA RD++ P E +P+ PE+ A+ AD R+
Sbjct 71 VDQGRPFMAFVYGIASNKVADAHRAMARDKSTPTEEIPDTEPDANSPEEFALVADGSNRV 130
Query 152 NELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLK 202
ELL++L K R+ILILRV+VGLSAEETA V ST GAVRVAQHRAL L+
Sbjct 131 RELLDLLSEKARDILILRVMVGLSAEETAEMVDSTPGAVRVAQHRALTTLR 181
>gi|259506704|ref|ZP_05749606.1| RNA polymerase sigma-70 factor, ECF subfamily [Corynebacterium
efficiens YS-314]
gi|259165722|gb|EEW50276.1| RNA polymerase sigma-70 factor, ECF subfamily [Corynebacterium
efficiens YS-314]
Length=182
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/171 (55%), Positives = 125/171 (74%), Gaps = 2/171 (1%)
Query 32 VVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRY 91
+V +A AGDR AL+ ++E I P+V+RY RAR+G + + +DVAQE+CLA T++ +
Sbjct 5 LVPQATAGDRRALQRIMEIIHPVVLRYARARIGGGRQP--TPEDVAQEICLAVATSIHNF 62
Query 92 RDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRM 151
D+GRPF+AF+YGIA++KVADAHRA RD++ P E +P+ PE+ A+ AD R+
Sbjct 63 VDQGRPFMAFVYGIASNKVADAHRAMARDKSTPTEEIPDTEPDANSPEEFALVADGSNRV 122
Query 152 NELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLK 202
ELL++L K R+ILILRV+VGLSAEETA V ST GAVRVAQHRAL L+
Sbjct 123 RELLDLLSEKARDILILRVMVGLSAEETAEMVDSTPGAVRVAQHRALTTLR 173
Lambda K H
0.320 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 252352077426
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40