BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3415c Length=275 Score E Sequences producing significant alignments: (Bits) Value gi|15610551|ref|NP_217932.1| hypothetical protein Rv3415c [Mycob... 528 3e-148 gi|340628393|ref|YP_004746845.1| hypothetical protein MCAN_34391... 521 5e-146 gi|339296239|gb|AEJ48350.1| hypothetical protein CCDC5079_3161 [... 510 1e-142 gi|297636077|ref|ZP_06953857.1| hypothetical protein MtubK4_1822... 509 2e-142 gi|253800462|ref|YP_003033463.1| hypothetical protein TBMG_03466... 502 2e-140 gi|308232457|ref|ZP_07416091.2| hypothetical protein TMAG_03363 ... 502 3e-140 gi|289555691|ref|ZP_06444901.1| conserved hypothetical protein [... 501 3e-140 gi|15827112|ref|NP_301375.1| hypothetical protein ML0383 [Mycoba... 357 1e-96 gi|467110|gb|AAA17292.1| B229_C1_175 [Mycobacterium leprae] 332 4e-89 gi|342861908|ref|ZP_08718553.1| hypothetical protein MCOL_23580 ... 327 1e-87 gi|296168780|ref|ZP_06850466.1| conserved hypothetical protein [... 323 1e-86 gi|183981154|ref|YP_001849445.1| hypothetical protein MMAR_1133 ... 320 2e-85 gi|41410372|ref|NP_963208.1| hypothetical protein MAP4274 [Mycob... 309 2e-82 gi|118467003|ref|YP_883495.1| hypothetical protein MAV_4360 [Myc... 308 8e-82 gi|240167834|ref|ZP_04746493.1| hypothetical protein MkanA1_0086... 280 2e-73 gi|333991866|ref|YP_004524480.1| hypothetical protein JDM601_322... 275 6e-72 gi|118472066|ref|YP_885977.1| hypothetical protein MSMEG_1598 [M... 258 8e-67 gi|315445842|ref|YP_004078721.1| hypothetical protein Mspyr1_433... 231 7e-59 gi|145225489|ref|YP_001136167.1| hypothetical protein Mflv_4913 ... 224 9e-57 gi|120402516|ref|YP_952345.1| hypothetical protein Mvan_1507 [My... 221 1e-55 gi|169630804|ref|YP_001704453.1| hypothetical protein MAB_3725c ... 217 1e-54 gi|126433793|ref|YP_001069484.1| hypothetical protein Mjls_1190 ... 215 6e-54 gi|108798134|ref|YP_638331.1| hypothetical protein Mmcs_1163 [My... 211 8e-53 gi|254820999|ref|ZP_05226000.1| hypothetical protein MintA_13777... 181 1e-43 gi|111023158|ref|YP_706130.1| hypothetical protein RHA1_ro06195 ... 174 2e-41 gi|466941|gb|AAC43229.1| B1620_C3_232 [Mycobacterium leprae] 168 1e-39 gi|226365664|ref|YP_002783447.1| hypothetical protein ROP_62550 ... 165 6e-39 gi|312140830|ref|YP_004008166.1| hypothetical protein REQ_34970 ... 133 3e-29 gi|325675533|ref|ZP_08155217.1| hypothetical protein HMPREF0724_... 133 4e-29 gi|226305418|ref|YP_002765376.1| hypothetical protein RER_19290 ... 131 1e-28 gi|254776789|ref|ZP_05218305.1| hypothetical protein MaviaA2_192... 124 1e-26 gi|317508303|ref|ZP_07965983.1| hypothetical protein HMPREF9336_... 116 4e-24 gi|54022858|ref|YP_117100.1| hypothetical protein nfa8910 [Nocar... 114 1e-23 gi|296394431|ref|YP_003659315.1| hypothetical protein Srot_2028 ... 113 3e-23 gi|343928275|ref|ZP_08767728.1| hypothetical protein GOALK_112_0... 110 2e-22 gi|229489535|ref|ZP_04383398.1| hypothetical protein RHOER0001_4... 110 2e-22 gi|254776790|ref|ZP_05218306.1| hypothetical protein MaviaA2_192... 110 3e-22 gi|333921688|ref|YP_004495269.1| hypothetical protein AS9A_4035 ... 104 2e-20 gi|300782697|ref|YP_003762988.1| hypothetical protein AMED_0766 ... 87.4 2e-15 gi|296138632|ref|YP_003645875.1| hypothetical protein Tpau_0902 ... 84.3 2e-14 gi|324998047|ref|ZP_08119159.1| hypothetical protein PseP1_04741... 79.3 6e-13 gi|326381880|ref|ZP_08203573.1| hypothetical protein SCNU_03012 ... 71.2 2e-10 gi|262201669|ref|YP_003272877.1| hypothetical protein Gbro_1722 ... 70.5 2e-10 gi|257054539|ref|YP_003132371.1| hypothetical protein Svir_04690... 70.1 4e-10 gi|331699104|ref|YP_004335343.1| hypothetical protein Psed_5356 ... 64.7 2e-08 gi|302524081|ref|ZP_07276423.1| predicted protein [Streptomyces ... 60.5 3e-07 gi|254818891|ref|ZP_05223892.1| hypothetical protein MintA_03144... 50.8 2e-04 gi|256380526|ref|YP_003104186.1| hypothetical protein Amir_6540 ... 43.1 0.045 gi|117927573|ref|YP_872124.1| hypothetical protein Acel_0364 [Ac... 41.6 0.12 >gi|15610551|ref|NP_217932.1| hypothetical protein Rv3415c [Mycobacterium tuberculosis H37Rv] gi|15843011|ref|NP_338048.1| hypothetical protein MT3524 [Mycobacterium tuberculosis CDC1551] gi|31794596|ref|NP_857089.1| hypothetical protein Mb3449c [Mycobacterium bovis AF2122/97] 41 more sequence titles Length=275 Score = 528 bits (1361), Expect = 3e-148, Method: Compositional matrix adjust. Identities = 274/275 (99%), Positives = 275/275 (100%), Gaps = 0/275 (0%) Query 1 VNETPHAPVVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVL 60 +NETPHAPVVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVL Sbjct 1 MNETPHAPVVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVL 60 Query 61 RRLVPAGPLASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADAL 120 RRLVPAGPLASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADAL Sbjct 61 RRLVPAGPLASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADAL 120 Query 121 GVGRFAAAGALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELT 180 GVGRFAAAGALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELT Sbjct 121 GVGRFAAAGALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELT 180 Query 181 QAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLID 240 QAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLID Sbjct 181 QAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLID 240 Query 241 IGTVTFSAQQLRELTKIRNICAGQVRRAGGCWRTA 275 IGTVTFSAQQLRELTKIRNICAGQVRRAGGCWRTA Sbjct 241 IGTVTFSAQQLRELTKIRNICAGQVRRAGGCWRTA 275 >gi|340628393|ref|YP_004746845.1| hypothetical protein MCAN_34391 [Mycobacterium canettii CIPT 140010059] gi|340006583|emb|CCC45770.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=275 Score = 521 bits (1341), Expect = 5e-146, Method: Compositional matrix adjust. Identities = 271/275 (99%), Positives = 272/275 (99%), Gaps = 0/275 (0%) Query 1 VNETPHAPVVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVL 60 +NETPHAPVVEQVLVAAAFGNQPG WPLPTAITPH LWLRAVAAGGQGRYAHAYGDLSVL Sbjct 1 MNETPHAPVVEQVLVAAAFGNQPGRWPLPTAITPHQLWLRAVAAGGQGRYAHAYGDLSVL 60 Query 61 RRLVPAGPLASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADAL 120 RRLVPAGPLASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADAL Sbjct 61 RRLVPAGPLASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADAL 120 Query 121 GVGRFAAAGALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELT 180 GVGRFAAAGALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELT Sbjct 121 GVGRFAAAGALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELT 180 Query 181 QAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLID 240 QAMAVASARHRVKSDVVLAAALCSAGAVARARAVGE ALDATARFGLLPLRWALACLLID Sbjct 181 QAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEAALDATARFGLLPLRWALACLLID 240 Query 241 IGTVTFSAQQLRELTKIRNICAGQVRRAGGCWRTA 275 IGTVTFSAQQLRELTKIRNICAGQVRRAGGCWRTA Sbjct 241 IGTVTFSAQQLRELTKIRNICAGQVRRAGGCWRTA 275 >gi|339296239|gb|AEJ48350.1| hypothetical protein CCDC5079_3161 [Mycobacterium tuberculosis CCDC5079] gi|339299840|gb|AEJ51950.1| hypothetical protein CCDC5180_3113 [Mycobacterium tuberculosis CCDC5180] Length=267 Score = 510 bits (1313), Expect = 1e-142, Method: Compositional matrix adjust. Identities = 266/267 (99%), Positives = 267/267 (100%), Gaps = 0/267 (0%) Query 9 VVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP 68 +VEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP Sbjct 1 MVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP 60 Query 69 LASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAA 128 LASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAA Sbjct 61 LASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAA 120 Query 129 GALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASA 188 GALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASA Sbjct 121 GALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASA 180 Query 189 RHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSA 248 RHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSA Sbjct 181 RHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSA 240 Query 249 QQLRELTKIRNICAGQVRRAGGCWRTA 275 QQLRELTKIRNICAGQVRRAGGCWRTA Sbjct 241 QQLRELTKIRNICAGQVRRAGGCWRTA 267 >gi|297636077|ref|ZP_06953857.1| hypothetical protein MtubK4_18225 [Mycobacterium tuberculosis KZN 4207] gi|297733077|ref|ZP_06962195.1| hypothetical protein MtubKR_18395 [Mycobacterium tuberculosis KZN R506] gi|313660408|ref|ZP_07817288.1| hypothetical protein MtubKV_18390 [Mycobacterium tuberculosis KZN V2475] Length=287 Score = 509 bits (1311), Expect = 2e-142, Method: Compositional matrix adjust. Identities = 266/267 (99%), Positives = 267/267 (100%), Gaps = 0/267 (0%) Query 9 VVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP 68 +VEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP Sbjct 1 MVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP 60 Query 69 LASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAA 128 LASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAA Sbjct 61 LASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAA 120 Query 129 GALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASA 188 GALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASA Sbjct 121 GALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASA 180 Query 189 RHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSA 248 RHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSA Sbjct 181 RHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSA 240 Query 249 QQLRELTKIRNICAGQVRRAGGCWRTA 275 QQLRELTKIRNICAGQVRRAGGCWRTA Sbjct 241 QQLRELTKIRNICAGQVRRAGGCWRTA 267 >gi|253800462|ref|YP_003033463.1| hypothetical protein TBMG_03466 [Mycobacterium tuberculosis KZN 1435] gi|253321965|gb|ACT26568.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|328460194|gb|AEB05617.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length=283 Score = 502 bits (1293), Expect = 2e-140, Method: Compositional matrix adjust. Identities = 262/263 (99%), Positives = 263/263 (100%), Gaps = 0/263 (0%) Query 13 VLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASL 72 +LVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASL Sbjct 1 MLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASL 60 Query 73 AHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAGALL 132 AHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAGALL Sbjct 61 AHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAGALL 120 Query 133 DRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRV 192 DRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRV Sbjct 121 DRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRV 180 Query 193 KSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLR 252 KSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLR Sbjct 181 KSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLR 240 Query 253 ELTKIRNICAGQVRRAGGCWRTA 275 ELTKIRNICAGQVRRAGGCWRTA Sbjct 241 ELTKIRNICAGQVRRAGGCWRTA 263 >gi|308232457|ref|ZP_07416091.2| hypothetical protein TMAG_03363 [Mycobacterium tuberculosis SUMu001] gi|308370260|ref|ZP_07420820.2| hypothetical protein TMBG_03884 [Mycobacterium tuberculosis SUMu002] gi|308371341|ref|ZP_07424625.2| hypothetical protein TMCG_02567 [Mycobacterium tuberculosis SUMu003] 20 more sequence titles Length=263 Score = 502 bits (1292), Expect = 3e-140, Method: Compositional matrix adjust. Identities = 262/263 (99%), Positives = 263/263 (100%), Gaps = 0/263 (0%) Query 13 VLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASL 72 +LVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASL Sbjct 1 MLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASL 60 Query 73 AHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAGALL 132 AHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAGALL Sbjct 61 AHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAGALL 120 Query 133 DRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRV 192 DRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRV Sbjct 121 DRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRV 180 Query 193 KSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLR 252 KSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLR Sbjct 181 KSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLR 240 Query 253 ELTKIRNICAGQVRRAGGCWRTA 275 ELTKIRNICAGQVRRAGGCWRTA Sbjct 241 ELTKIRNICAGQVRRAGGCWRTA 263 >gi|289555691|ref|ZP_06444901.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289440323|gb|EFD22816.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] Length=282 Score = 501 bits (1291), Expect = 3e-140, Method: Compositional matrix adjust. Identities = 261/262 (99%), Positives = 262/262 (100%), Gaps = 0/262 (0%) Query 14 LVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASLA 73 +VAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASLA Sbjct 1 MVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASLA 60 Query 74 HSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAGALLD 133 HSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAGALLD Sbjct 61 HSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAGALLD 120 Query 134 RADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRVK 193 RADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRVK Sbjct 121 RADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRVK 180 Query 194 SDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLRE 253 SDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLRE Sbjct 181 SDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLRE 240 Query 254 LTKIRNICAGQVRRAGGCWRTA 275 LTKIRNICAGQVRRAGGCWRTA Sbjct 241 LTKIRNICAGQVRRAGGCWRTA 262 >gi|15827112|ref|NP_301375.1| hypothetical protein ML0383 [Mycobacterium leprae TN] gi|221229590|ref|YP_002503006.1| hypothetical protein MLBr_00383 [Mycobacterium leprae Br4923] gi|13092660|emb|CAC29891.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932697|emb|CAR70476.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=281 Score = 357 bits (915), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 205/279 (74%), Positives = 216/279 (78%), Gaps = 8/279 (2%) Query 1 VNETPHAPVVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVL 60 V E H E +L AAAFGNQPG WPLPTA TPH LWLRAVAAGGQG Y+ AY DL+VL Sbjct 7 VVEIGHTSAAEPMLAAAAFGNQPGRWPLPTATTPHQLWLRAVAAGGQGHYSSAYRDLAVL 66 Query 61 RRLVPAGPLASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADAL 120 RR VPAG LASLAHST GS LRQLGWH+LARGWDGRAL LAG D EA ADALIGLAADAL Sbjct 67 RRSVPAGRLASLAHSTHGSFLRQLGWHSLARGWDGRALVLAGTDSEARADALIGLAADAL 126 Query 121 GVGRFAAAGALLDRAD----PLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEA 176 GVGR AAA LL R P + VADRLAVRRRWVAAELAMA GDGATAVRHA EA Sbjct 127 GVGRLAAAATLLRRVGSALAPAQLPAQVADRLAVRRRWVAAELAMAVGDGATAVRHAREA 186 Query 177 VELTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALAC 236 VEL Q V S RH+VKSDVVLAAALCSA A RAR V E AL AT R GL+PLRWALAC Sbjct 187 VELAQVGRVVSVRHQVKSDVVLAAALCSA-ATERARVVAEAALAATGRLGLIPLRWALAC 245 Query 237 LLIDIGTVTFSAQQLRELTKIRNICAGQVRRAGGCWRTA 275 LLIDIG+VTFS +L EL R++CA QVRRAGG WRTA Sbjct 246 LLIDIGSVTFSEPELSEL---RDVCADQVRRAGGTWRTA 281 >gi|467110|gb|AAA17292.1| B229_C1_175 [Mycobacterium leprae] Length=264 Score = 332 bits (851), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 191/258 (75%), Positives = 200/258 (78%), Gaps = 5/258 (1%) Query 1 VNETPHAPVVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVL 60 V E H E +L AAAFGNQPG WPLPTA TPH LWLRAVAAGGQG Y+ AY DL+VL Sbjct 7 VVEIGHTSAAEPMLAAAAFGNQPGRWPLPTATTPHQLWLRAVAAGGQGHYSSAYRDLAVL 66 Query 61 RRLVPAGPLASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADAL 120 RR VPAG LASLAHST GS LRQLGWH+LARGWDGRAL LAG D EA ADALIGLAADAL Sbjct 67 RRSVPAGRLASLAHSTHGSFLRQLGWHSLARGWDGRALVLAGTDSEARADALIGLAADAL 126 Query 121 GVGRFAAAGALLDRAD----PLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEA 176 GVGR AAA LL R P + VADRLAVRRRWVAAELAMA GDGATAVRHA EA Sbjct 127 GVGRLAAAATLLRRVGSALAPAQLPAQVADRLAVRRRWVAAELAMAVGDGATAVRHAREA 186 Query 177 VELTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALAC 236 VEL Q V S RH+VKSDVVLAAALCSA A RAR V E AL AT R GL+PLRWALAC Sbjct 187 VELAQVGRVVSVRHQVKSDVVLAAALCSA-ATERARVVAEAALAATGRLGLIPLRWALAC 245 Query 237 LLIDIGTVTFSAQQLREL 254 LLIDIG+VTFS +L EL Sbjct 246 LLIDIGSVTFSEPELSEL 263 >gi|342861908|ref|ZP_08718553.1| hypothetical protein MCOL_23580 [Mycobacterium colombiense CECT 3035] gi|342130725|gb|EGT84029.1| hypothetical protein MCOL_23580 [Mycobacterium colombiense CECT 3035] Length=266 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 196/269 (73%), Positives = 215/269 (80%), Gaps = 5/269 (1%) Query 9 VVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP 68 ++ + L AAFG++PGSWPLP+A TP LWLRAVAAGGQGRY A+ DL+VLRR PAG Sbjct 1 MIGRQLADAAFGDRPGSWPLPSATTPAQLWLRAVAAGGQGRYGAAFRDLAVLRRSAPAGR 60 Query 69 LASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAA 128 LASL ST GS LRQLGWH +ARGWDGRALAL+G D EA ADALIGLAADALGVGRFAAA Sbjct 61 LASLGMSTHGSFLRQLGWHAVARGWDGRALALSGGDPEAAADALIGLAADALGVGRFAAA 120 Query 129 GALLDRADPLVVS--PLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVA 186 GALL RADPL+ S +V DRL VRRRWVAAELAMA GDG AVRHA E VEL AMAVA Sbjct 121 GALLARADPLLASSKSVVPDRLPVRRRWVAAELAMARGDGDAAVRHAGEGVELAAAMAVA 180 Query 187 SARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTF 246 S RHRVKSDVVLAAALC AG + RARAV + AL T + GLLPLRWALACLLIDI +VTF Sbjct 181 SPRHRVKSDVVLAAALCCAGNLERARAVADAALATTGQLGLLPLRWALACLLIDIESVTF 240 Query 247 SAQQLRELTKIRNICAGQVRRAGGCWRTA 275 A QL E IR++CAG VRRAGG WR+A Sbjct 241 PAHQLHE---IRDVCAGHVRRAGGTWRSA 266 >gi|296168780|ref|ZP_06850466.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896541|gb|EFG76186.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=264 Score = 323 bits (829), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 194/267 (73%), Positives = 215/267 (81%), Gaps = 3/267 (1%) Query 9 VVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP 68 ++ + + AAAFG++PG+WPLPTA+TP LWLRAVAAGGQGRY AY DL+ LRR PAGP Sbjct 1 MIGRNMAAAAFGDRPGAWPLPTAVTPEELWLRAVAAGGQGRYGSAYCDLAALRRSAPAGP 60 Query 69 LASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAA 128 L SLAHSTQGS LRQLGWH ARGWDGRALALAGADRE+ ADALIGLAADALGVGRFAAA Sbjct 61 LVSLAHSTQGSFLRQLGWHAAARGWDGRALALAGADRESRADALIGLAADALGVGRFAAA 120 Query 129 GALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASA 188 ALL RAD + + V DR VRR WVAAELAMA GDG AVRHA EA L AM V SA Sbjct 121 AALLTRADAELSAGPVPDRQPVRRWWVAAELAMARGDGELAVRHANEAARLAGAMVVPSA 180 Query 189 RHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSA 248 RH VKS+VVLAAALC+AGAV RARAV E ALDAT R GL+PLRWALACLLID+G+VT S Sbjct 181 RHAVKSEVVLAAALCTAGAVERARAVAEAALDATGRLGLVPLRWALACLLIDLGSVTLST 240 Query 249 QQLRELTKIRNICAGQVRRAGGCWRTA 275 +QL E IR++CAG VRRAG WR+A Sbjct 241 RQLHE---IRDVCAGHVRRAGATWRSA 264 >gi|183981154|ref|YP_001849445.1| hypothetical protein MMAR_1133 [Mycobacterium marinum M] gi|183174480|gb|ACC39590.1| conserved hypothetical protein [Mycobacterium marinum M] Length=290 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 186/273 (69%), Positives = 204/273 (75%), Gaps = 7/273 (2%) Query 7 APVVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPA 66 A +E L AAFG++P WPLP AITP LWLRAVAAGGQGRY AY DL++LRR VPA Sbjct 21 ASAIESTLDDAAFGSRPDRWPLPAAITPRQLWLRAVAAGGQGRYGSAYSDLALLRRRVPA 80 Query 67 GPLASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFA 126 +SLAHST S LRQLGWHT AR WDGRALALAGAD EA DAL+GLAADALGVGRFA Sbjct 81 DRWSSLAHSTHASFLRQLGWHTRARRWDGRALALAGADPEAATDALVGLAADALGVGRFA 140 Query 127 AAGALLDRADPLV----VSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQA 182 A+ ALL RAD +V + P VADRLAVRR WV AELAM +GDG TAV AE VEL +A Sbjct 141 ASAALLSRADTVVAAAQLPPQVADRLAVRRCWVGAELAMFSGDGRTAVGLAERGVELARA 200 Query 183 MAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIG 242 ASARHRVKSDVVLAAALCSAG + +AR +GE A D R GL+PLRWALACLLID Sbjct 201 SGGASARHRVKSDVVLAAALCSAGVIDKARVIGEAAFDDAGRLGLIPLRWALACLLIDTE 260 Query 243 TVTFSAQQLRELTKIRNICAGQVRRAGGCWRTA 275 +VT QLRE IR+ICA QV RAGG WR A Sbjct 261 SVTLPVNQLRE---IRDICADQVWRAGGTWRPA 290 >gi|41410372|ref|NP_963208.1| hypothetical protein MAP4274 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399206|gb|AAS06824.1| hypothetical protein MAP_4274 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459756|gb|EGO38674.1| hypothetical protein MAPs_00310 [Mycobacterium avium subsp. paratuberculosis S397] Length=276 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 187/271 (70%), Positives = 208/271 (77%), Gaps = 8/271 (2%) Query 10 VEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPL 69 V+++L AAFG++P WPLP A TP LWLRAVAAGGQGRY A DL+ LRR AG L Sbjct 9 VDRLLAEAAFGDRPDRWPLPAAGTPAQLWLRAVAAGGQGRYGAALHDLARLRRTATAGRL 68 Query 70 ASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAG 129 ASLAHSTQGS LRQLGWH LARGWDGRALALAG D EAGADALIGLAADALGVGRFAAA Sbjct 69 ASLAHSTQGSFLRQLGWHALARGWDGRALALAGDDPEAGADALIGLAADALGVGRFAAAA 128 Query 130 ALLDRADPLVVSP-LVADRLAVRRRWVAAELAMATGDGATAVRH----AEEAVELTQAMA 184 ALL R +PL+ S +V R++VRR WVAAELAMA GDG AVR E A A Sbjct 129 ALLARVEPLLDSENIVPQRISVRRGWVAAELAMARGDGELAVRRAGEAVEAAAATAAGAA 188 Query 185 VASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTV 244 A+ARHRVKS+VVLAAALCSAG + RARAV + AL TAR L+PLRWALACLLIDIG+V Sbjct 189 GAAARHRVKSEVVLAAALCSAGDIERARAVADTALHTTARLRLVPLRWALACLLIDIGSV 248 Query 245 TFSAQQLRELTKIRNICAGQVRRAGGCWRTA 275 FS++QL E IR +CAGQVRRAGG WR+A Sbjct 249 EFSSRQLHE---IREVCAGQVRRAGGTWRSA 276 >gi|118467003|ref|YP_883495.1| hypothetical protein MAV_4360 [Mycobacterium avium 104] gi|118168290|gb|ABK69187.1| conserved hypothetical protein [Mycobacterium avium 104] Length=276 Score = 308 bits (788), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 186/271 (69%), Positives = 208/271 (77%), Gaps = 8/271 (2%) Query 10 VEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPL 69 V+++L AAFG++P WPLP A TP LWLRAVAAGGQGRY A DL+ LRR AG L Sbjct 9 VDRLLAEAAFGDRPDRWPLPAAGTPAQLWLRAVAAGGQGRYGAALHDLARLRRTATAGRL 68 Query 70 ASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAG 129 ASLAHSTQGS LRQLGWH LARGWDGRALALAG D EAGADALIGLAADALGVGRFAAA Sbjct 69 ASLAHSTQGSFLRQLGWHALARGWDGRALALAGDDPEAGADALIGLAADALGVGRFAAAA 128 Query 130 ALLDRADPLVVSP-LVADRLAVRRRWVAAELAMATGDGATAVRH----AEEAVELTQAMA 184 ALL R +PL+ S +V R++VRR WVAAELAMA GDG AVR E A A Sbjct 129 ALLARVEPLLDSENIVPQRISVRRGWVAAELAMARGDGELAVRRAGEAVEAAAATALGAA 188 Query 185 VASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTV 244 A+ARH+VKS+VVLAAALCSAG + RARAV + AL TAR L+PLRWALACLLIDIG+V Sbjct 189 GAAARHQVKSEVVLAAALCSAGDIERARAVADTALHTTARLRLVPLRWALACLLIDIGSV 248 Query 245 TFSAQQLRELTKIRNICAGQVRRAGGCWRTA 275 FS++QL E IR +CAGQVRRAGG WR+A Sbjct 249 EFSSRQLHE---IREVCAGQVRRAGGTWRSA 276 >gi|240167834|ref|ZP_04746493.1| hypothetical protein MkanA1_00860 [Mycobacterium kansasii ATCC 12478] Length=233 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 172/238 (73%), Positives = 190/238 (80%), Gaps = 9/238 (3%) Query 42 VAAGGQGRYAHAYGDLSVLRRLVPAGPLASLAHSTQGSLLRQLGWHTLARGWDGRALALA 101 +AAGGQGRY AY DL LRR VPAG LASLAHSTQG+ LRQLGWHTLARGWDGRA+ALA Sbjct 1 MAAGGQGRYGSAYTDLESLRRRVPAGRLASLAHSTQGAFLRQLGWHTLARGWDGRAMALA 60 Query 102 GADREAGADALIGLAADALGVGRFAAAGALLDRADPLV----VSPLVADRLAVRRRWVAA 157 GAD EA ADALIGLAADALGVGRFA + LL RAD ++ + VA+RLAVRR WVAA Sbjct 61 GADPEACADALIGLAADALGVGRFAVSATLLTRADTVLDAAGLPADVANRLAVRRGWVAA 120 Query 158 ELAMATGDGATAVRHAEEAVELTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEE 217 ELAM +G+ ATAV A++AVE A A SARH+VKS+VVLAAALCSAGA RAR VG E Sbjct 121 ELAMFSGEAATAVDCAQQAVE--SARAGGSARHQVKSEVVLAAALCSAGAAERARDVGAE 178 Query 218 ALDATARFGLLPLRWALACLLIDIGTVTFSAQQLRELTKIRNICAGQVRRAGGCWRTA 275 AL T R GL+PLRWALACLLIDIG+VTFS +QLRE IR+ICA QVRRAGG WR A Sbjct 179 ALVTTGRLGLIPLRWALACLLIDIGSVTFSTRQLRE---IRDICADQVRRAGGTWRPA 233 >gi|333991866|ref|YP_004524480.1| hypothetical protein JDM601_3226 [Mycobacterium sp. JDM601] gi|333487834|gb|AEF37226.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=270 Score = 275 bits (703), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 165/253 (66%), Positives = 181/253 (72%), Gaps = 8/253 (3%) Query 11 EQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLA 70 + VL AAAFG+ PG WPLP A TP WLRAVAAGGQGRYA A DL+ L R PAGPLA Sbjct 6 DAVLAAAAFGDAPGRWPLPAATTPRQRWLRAVAAGGQGRYASAGTDLAALLREAPAGPLA 65 Query 71 SLAHSTQGSLLRQLGWHTLARGWDGRALALA----GADREAGADALIGLAADALGVGRFA 126 SLAHSTQ S LRQLG H ARG DGRALALA G D EA ADAL+GLAADALGVGRFA Sbjct 66 SLAHSTQASFLRQLGGHQQARGLDGRALALAFNDGGVDPEATADALVGLAADALGVGRFA 125 Query 127 AAGALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVA 186 A+ ALL+RA L P RLAVRR WV AELAM TGDGATAVRHAE A+ELT Sbjct 126 ASAALLERAVGL-PQPKAPARLAVRRNWVTAELAMVTGDGATAVRHAEHALELTPET--- 181 Query 187 SARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTF 246 ARHRVKS VVLA ALC AG+V +A AV AL R GL+PLRWALAC+LID+ V Sbjct 182 MARHRVKSRVVLAGALCCAGSVDKACAVATTALQDADRLGLVPLRWALACMLIDLVDVAG 241 Query 247 SAQQLRELTKIRN 259 + + EL K+R+ Sbjct 242 ARWTVEELLKLRD 254 >gi|118472066|ref|YP_885977.1| hypothetical protein MSMEG_1598 [Mycobacterium smegmatis str. MC2 155] gi|118173353|gb|ABK74249.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=268 Score = 258 bits (658), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 158/268 (59%), Positives = 181/268 (68%), Gaps = 10/268 (3%) Query 10 VEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAG-- 67 V L AAFG+ PG WPLP+A TPH WLRAVAAGGQGRY A +L+ L R Sbjct 7 VTATLAEAAFGDDPGRWPLPSASTPHERWLRAVAAGGQGRYNCALTELAELIRAERGSLG 66 Query 68 -PLASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFA 126 PL SLAHST+ S LRQLGWHT ARG DG A A G D EA ADAL+GLAADALGVGRFA Sbjct 67 TPLVSLAHSTRASFLRQLGWHTRARGADGLAWAHRGTDPEAAADALVGLAADALGVGRFA 126 Query 127 AAGALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVA 186 A+ LL+RA + V+ R+AVR WV+AELAM TGDG TAV HAE V A A Sbjct 127 ASARLLERARTELGD--VSARVAVRSAWVSAELAMVTGDGPTAVVHAERGV--AAAAEYA 182 Query 187 SARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTF 246 S RH +KSDVV+AAALCSAG AR V ++AL AT GL+PLRWALACLL DIG+ Sbjct 183 SRRHTIKSDVVMAAALCSAGRPDDARVVADKALQATGDNGLIPLRWALACLLADIGS--- 239 Query 247 SAQQLRELTKIRNICAGQVRRAGGCWRT 274 +A L E+ +IR+ A VRR GG W + Sbjct 240 TAHTLEEVREIRDGTADTVRRRGGVWSS 267 >gi|315445842|ref|YP_004078721.1| hypothetical protein Mspyr1_43300 [Mycobacterium sp. Spyr1] gi|315264145|gb|ADU00887.1| hypothetical protein Mspyr1_43300 [Mycobacterium sp. Spyr1] Length=272 Score = 231 bits (590), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 154/278 (56%), Positives = 182/278 (66%), Gaps = 13/278 (4%) Query 1 VNETPHAPVVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVL 60 ++ TP V L AAFG PG WPLP A H LW+RAVAAGGQGRYA + DL L Sbjct 1 MDTTP--AVSANDLSTAAFGGNPGLWPLPPASGAHDLWVRAVAAGGQGRYASGFADLDRL 58 Query 61 RRLVPAGPLASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADRE-----AGADALIGL 115 RL + +SLA ST+ S LRQLGWHT+ARGWDGRA A+A E AGADALIGL Sbjct 59 ERLPRSATTSSLALSTRASFLRQLGWHTVARGWDGRAAAVAAGSAEPGAADAGADALIGL 118 Query 116 AADALGVGRFAAAGALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEE 175 AADALGVGRFAA+ L+ A L+ + + R AVR WV+AELAM GDG TAV HA Sbjct 119 AADALGVGRFAASARALEGAAELIGAAATS-RPAVRMGWVSAELAMFRGDGTTAVAHARR 177 Query 176 AVELTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALA 235 AV+L A S RHRVKS VVLAAALCS+G + AR G+ AL RFGL+PL+WA+A Sbjct 178 AVDL--AAGFGSVRHRVKSHVVLAAALCSSGDLDAARQEGDLALADATRFGLVPLQWAVA 235 Query 236 CLLIDIGTVTFSAQQLRELTKIRNICAGQVRRAGGCWR 273 CLL DIG+ + A ++R +R+ A V R GG WR Sbjct 236 CLLADIGSQAYPAARIR---AVRDASAEAVTRWGGVWR 270 >gi|145225489|ref|YP_001136167.1| hypothetical protein Mflv_4913 [Mycobacterium gilvum PYR-GCK] gi|145217975|gb|ABP47379.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=272 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 151/278 (55%), Positives = 180/278 (65%), Gaps = 13/278 (4%) Query 1 VNETPHAPVVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVL 60 ++ TP V L AAFG PG WPLP A H LW+RAV AGGQGRYA + DL L Sbjct 1 MDTTP--AVSANDLSTAAFGGDPGLWPLPPASGAHDLWVRAVVAGGQGRYASGFADLDRL 58 Query 61 RRLVPAGPLASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADRE-----AGADALIGL 115 RL + +SLA ST+ S LRQLGWHT+ARGWDGRA A+A E AGADALIGL Sbjct 59 ERLPRSATTSSLALSTRASFLRQLGWHTVARGWDGRAAAVAAGSAEPGAADAGADALIGL 118 Query 116 AADALGVGRFAAAGALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEE 175 AADALGVGRFAA+ L+ A L+ + + R AVR WV++ELAM GDG TAV HA Sbjct 119 AADALGVGRFAASARALEGAAELIGAAATS-RPAVRMGWVSSELAMFRGDGPTAVAHARR 177 Query 176 AVELTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALA 235 AV+L A S RHRVKS VVLAAALCS+G + AR G+ AL R GL+PL+WA+A Sbjct 178 AVDL--AAGFGSVRHRVKSHVVLAAALCSSGDLDAARQEGDLALADATRSGLVPLQWAVA 235 Query 236 CLLIDIGTVTFSAQQLRELTKIRNICAGQVRRAGGCWR 273 CLL DIG+ + A ++R +R+ A V R GG WR Sbjct 236 CLLADIGSQAYPAARIR---AVRDASAEAVTRWGGVWR 270 >gi|120402516|ref|YP_952345.1| hypothetical protein Mvan_1507 [Mycobacterium vanbaalenii PYR-1] gi|119955334|gb|ABM12339.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=266 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 152/258 (59%), Positives = 169/258 (66%), Gaps = 9/258 (3%) Query 17 AAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASLAHST 76 AAFG PG+WPLP A P WLRAVAAGGQGRYA A DL LRRL LASLA ST Sbjct 15 AAFGADPGAWPLPPATEPLQWWLRAVAAGGQGRYASALADLDRLRRLTVTDALASLALST 74 Query 77 QGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAGALLDR-A 135 + S LRQLGWH AR WDGRA ALA EAGADALIGLAADALGVGRFAA+ L+R A Sbjct 75 RASFLRQLGWHDRARTWDGRAAALAAT-GEAGADALIGLAADALGVGRFAASARALERAA 133 Query 136 DPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRVKSD 195 D L + RL VR WV+AELAM G+G AV HAE L + +V SARH VKS Sbjct 134 DALADTD--CPRLPVRFAWVSAELAMFRGEGGRAVGHAERGAHLAE--SVGSARHTVKSQ 189 Query 196 VVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLRELT 255 V+LAAALCS G + +R V ALDA R GL+PL+WA+A LL DIG S Q+R Sbjct 190 VILAAALCSRGDLDASRRVAGNALDAAQRLGLVPLQWAVASLLADIGADDRSPAQIR--- 246 Query 256 KIRNICAGQVRRAGGCWR 273 IR+ A V R GG WR Sbjct 247 GIRDAAAEAVIRWGGVWR 264 >gi|169630804|ref|YP_001704453.1| hypothetical protein MAB_3725c [Mycobacterium abscessus ATCC 19977] gi|169242771|emb|CAM63799.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=275 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/266 (52%), Positives = 173/266 (66%), Gaps = 11/266 (4%) Query 13 VLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASL 72 L+ AAFG P +WPLP A TP WLRA+A GG GRYA A+ +LS + P G LASL Sbjct 11 TLLDAAFGASPATWPLPCASTPQDAWLRAIALGGAGRYAAAHAELSAIPASRPGG-LASL 69 Query 73 AHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAGALL 132 A ST+ SLLRQL WHT ARG+DGRAL+LAG+D EA +DAL+GLAADALG+ RF A ALL Sbjct 70 ALSTRASLLRQLAWHTHARGFDGRALSLAGSDAEARSDALVGLAADALGLARFPLAHALL 129 Query 133 DRADPLVVSPLVAD-----RLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVAS 187 ++A+PL D RL +R WV AELAM +GDG A+R+A A EL Q V S Sbjct 130 EQAEPLSGR---GDARWPWRLPLRLAWVHAELAMVSGDGERALRYAHAAEELAQ--DVPS 184 Query 188 ARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFS 247 RH+VK+ +VLAAAL S G + ++ V L A + L+PLRWALA +L + T + Sbjct 185 VRHQVKTTMVLAAALSSVGDLDKSAVVAARGLRAASAHKLVPLRWALAAMLAGLPTPDEA 244 Query 248 AQQLRELTKIRNICAGQVRRAGGCWR 273 ++ +L +R CA + RAGG WR Sbjct 245 GRRGEDLVAVRRECAAWIARAGGEWR 270 >gi|126433793|ref|YP_001069484.1| hypothetical protein Mjls_1190 [Mycobacterium sp. JLS] gi|126233593|gb|ABN96993.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=258 Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 149/259 (58%), Positives = 166/259 (65%), Gaps = 8/259 (3%) Query 14 LVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASLA 73 L+ AAFG +P WPLP H LWLRAVAAGGQGRYA A DL+ L R P SLA Sbjct 5 LLDAAFGGRPDRWPLPPPADAHDLWLRAVAAGGQGRYAVALADLTALDRCWGPAP-RSLA 63 Query 74 HSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAGALLD 133 ST+ S LRQLG H A GWDGRAL A D ALIGLAADALGVGRFAA+ LLD Sbjct 64 MSTRASFLRQLGGHRPAAGWDGRALLAADTDAAVAD-ALIGLAADALGVGRFAASQRLLD 122 Query 134 RADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRVK 193 RA +V S A RL VR +WV AELAM GDGATAV HAE AV A S RHR+K Sbjct 123 RAGAVVESADDA-RLPVRLQWVRAELAMVRGDGATAVEHAEGAVAAAAAFT--SVRHRLK 179 Query 194 SDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLRE 253 SDVVLAAALCS G + R RA+ + ALD GL+PLRWALA LL DIG+ ++ E Sbjct 180 SDVVLAAALCSHGELDRCRAISDAALDRAGELGLVPLRWALASLLADIGSAAYTPG---E 236 Query 254 LTKIRNICAGQVRRAGGCW 272 +T R+ A VR GG W Sbjct 237 VTDFRDTSADTVRHRGGVW 255 >gi|108798134|ref|YP_638331.1| hypothetical protein Mmcs_1163 [Mycobacterium sp. MCS] gi|119867230|ref|YP_937182.1| hypothetical protein Mkms_1180 [Mycobacterium sp. KMS] gi|108768553|gb|ABG07275.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119693319|gb|ABL90392.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=258 Score = 211 bits (538), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 146/259 (57%), Positives = 164/259 (64%), Gaps = 8/259 (3%) Query 14 LVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASLA 73 L+ AAFG +P WPLP H WLRAVAAGGQGRYA A DL+ L R P SLA Sbjct 5 LLDAAFGGRPDRWPLPPPADAHDRWLRAVAAGGQGRYAVALADLTALDRCGGPAP-RSLA 63 Query 74 HSTQGSLLRQLGWHTLARGWDGRALALAGADREAGADALIGLAADALGVGRFAAAGALLD 133 ST+ S LRQLG H A GWDGRAL A D ALIGLAADALGVGRFAA+ LLD Sbjct 64 MSTRASFLRQLGGHRPAAGWDGRALLAADTDAAVAD-ALIGLAADALGVGRFAASQRLLD 122 Query 134 RADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRVK 193 RAD +V S A RL VR +WV+AELAM GDGATAV HAE AV A S RH +K Sbjct 123 RADAVVKSADDA-RLPVRLQWVSAELAMVQGDGATAVEHAERAVAAAAAFT--SVRHCLK 179 Query 194 SDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLRE 253 SDVVLAAALCS G + RA+ + ALD GL+PL WALA LL DIG+ ++ Q Sbjct 180 SDVVLAAALCSHGEIDSCRAIADAALDRAGELGLVPLHWALASLLADIGSAAYTPGQ--- 236 Query 254 LTKIRNICAGQVRRAGGCW 272 +T R+ A VR GG W Sbjct 237 VTDFRDTSADTVRHRGGVW 255 >gi|254820999|ref|ZP_05226000.1| hypothetical protein MintA_13777 [Mycobacterium intracellulare ATCC 13950] Length=151 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/132 (74%), Positives = 108/132 (82%), Gaps = 3/132 (2%) Query 144 VADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRVKSDVVLAAALC 203 V DR+ VRRRWVAAELAMA G+G AVRHA EA+EL AM+V SARHRVKS+VVLAAALC Sbjct 23 VPDRIPVRRRWVAAELAMARGEGDVAVRHAGEAMELAAAMSVPSARHRVKSEVVLAAALC 82 Query 204 SAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLRELTKIRNICAG 263 SAG + RARAV + AL T R GLLPLRWALACLLIDI +VTFSAQQL E IR++CAG Sbjct 83 SAGNIERARAVADAALQTTGRLGLLPLRWALACLLIDIESVTFSAQQLHE---IRDVCAG 139 Query 264 QVRRAGGCWRTA 275 QVR AGG WR+A Sbjct 140 QVRHAGGTWRSA 151 >gi|111023158|ref|YP_706130.1| hypothetical protein RHA1_ro06195 [Rhodococcus jostii RHA1] gi|110822688|gb|ABG97972.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=277 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 121/272 (45%), Positives = 156/272 (58%), Gaps = 21/272 (7%) Query 14 LVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP-LASL 72 L+ AAFG PG PLP + P W+RAVA G +G YA + +L L R AGP +ASL Sbjct 14 LIRAAFGPDPGGCPLPASDVPVERWMRAVAWGARGHYARSRAELDALTRGGVAGPAVASL 73 Query 73 AHSTQGSLLRQLGWHTLARGWDGRALALAGAD---------REAGADALIGLAADALGVG 123 A STQ SLLRQLGWH +A G+DGRALA+ G REA DAL GLAADALG G Sbjct 74 AWSTQASLLRQLGWHGVASGFDGRALAVVGTRPDDEDGVLVREARCDALTGLAADALGCG 133 Query 124 RFAAAGALLDRADPLVVSPLVAD--RLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQ 181 R A LL R + D R VRR WV+AEL +A G+ A+A RHAE A E+++ Sbjct 134 RLALGRRLLGRCSEHLDETAPDDLWRQRVRRLWVSAELLLAGGEFASARRHAETAAEISE 193 Query 182 AMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDI 241 A SARHRVKSD++ +A++ A + + LD R+GL+PL+WA A LL + Sbjct 194 --AAGSARHRVKSDLLRSASMTGESDSGPAARLAADVLDRCDRYGLIPLKWAAAMLLSGV 251 Query 242 GTVTFSAQQLRELTKIRNICAGQVRRAGGCWR 273 + + + +R C +R GG +R Sbjct 252 TSDSRA-------EAVRTECETVIRARGGRFR 276 >gi|466941|gb|AAC43229.1| B1620_C3_232 [Mycobacterium leprae] Length=122 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 94/126 (75%), Positives = 101/126 (81%), Gaps = 4/126 (3%) Query 150 VRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRVKSDVVLAAALCSAGAVA 209 +RRRWVAAELAMA GDGATAVRHA EAVEL Q V S RH+VKSDVVLAAALCSA A Sbjct 1 MRRRWVAAELAMAVGDGATAVRHAREAVELAQVGRVVSVRHQVKSDVVLAAALCSA-ATE 59 Query 210 RARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLRELTKIRNICAGQVRRAG 269 RAR V E AL AT R GL+PLRWALACLLIDIG+VTFS +L EL R++CA QVRRAG Sbjct 60 RARVVAEAALAATGRLGLIPLRWALACLLIDIGSVTFSEPELSEL---RDVCADQVRRAG 116 Query 270 GCWRTA 275 G WRTA Sbjct 117 GTWRTA 122 >gi|226365664|ref|YP_002783447.1| hypothetical protein ROP_62550 [Rhodococcus opacus B4] gi|226244154|dbj|BAH54502.1| hypothetical protein [Rhodococcus opacus B4] Length=277 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 121/272 (45%), Positives = 154/272 (57%), Gaps = 21/272 (7%) Query 14 LVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP-LASL 72 L+ AAFG PG+ PLP + P W+RAVA G QG Y + +L L R A P + SL Sbjct 14 LIRAAFGADPGASPLPDSDVPVERWMRAVAWGAQGHYGRSRAELDALTRGGAAEPAVVSL 73 Query 73 AHSTQGSLLRQLGWHTLARGWDGRALALAGADR---------EAGADALIGLAADALGVG 123 A ST+ SLLRQLGWH +A G+DGRALAL G D +A DAL GLAADALG G Sbjct 74 AWSTRASLLRQLGWHAVASGFDGRALALVGTDPGAAFGVLAVQARCDALTGLAADALGCG 133 Query 124 RFAAAGALLDR-ADPLVVSPLVAD-RLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQ 181 R A LLDR A+ L L A R VRR WV+AEL +A GD A RHAE A E+++ Sbjct 134 RLALGRRLLDRCAEHLDAHDLGALWRQHVRRHWVSAELFLAAGDFTAARRHAETAAEISE 193 Query 182 AMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLLIDI 241 A S RH VKSD++ +A++ A + + +D R+GL+PL+WA A LL Sbjct 194 --AAGSVRHHVKSDLLRSASMTGDSDSGPAARLAADVVDRCDRYGLIPLKWAAAMLL--- 248 Query 242 GTVTFSAQQLRELTKIRNICAGQVRRAGGCWR 273 G VT ++ + C +R GG +R Sbjct 249 GGVTSDSRA----ETVCKECEAVIRARGGHFR 276 >gi|312140830|ref|YP_004008166.1| hypothetical protein REQ_34970 [Rhodococcus equi 103S] gi|311890169|emb|CBH49487.1| hypothetical protein REQ_34970 [Rhodococcus equi 103S] Length=267 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 117/272 (44%), Positives = 141/272 (52%), Gaps = 23/272 (8%) Query 13 VLVAAAFGNQPGSWPLPT---AITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP- 68 +L+ AFG+ PG PLP + P WLR VA GGQGRYA A L L R P Sbjct 1 MLLDVAFGSTPGRSPLPDPADSADPADRWLRVVALGGQGRYAQARAALDDLERRPGLDPA 60 Query 69 LASLAHSTQGSLLRQLGWHTLARGWDGRALALAGA----DR---EAGADALIGLAADALG 121 LASLA ST+ SLLRQLG H A +DG ALAL G+ DR EA DAL GLAADALG Sbjct 61 LASLASSTRASLLRQLGGHAKASEYDGAALALLGSSGPDDRRWHEARCDALTGLAADALG 120 Query 122 VGRFAAAGALLDRADPLVVSPLVAD---RLAVRRRWVAAELAMATGDGATAVRHAEEAVE 178 GR A LL+R + D R VR WV AE+A+A+GD ATA + AV Sbjct 121 CGRLALGRRLLERCAAHLAGVGDEDALWRQHVRLDWVTAEIALASGDFATATTRTDSAV- 179 Query 179 LTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLL 238 ++ S RHRVKS ++ AAA RA L + GLLPLRWA A LL Sbjct 180 -ARSAEHPSVRHRVKSALLSAAAATRLPTPDRAIETARAVLADSGTHGLLPLRWAAAMLL 238 Query 239 IDIGTVTFSAQQLRELTKIRNICAGQVRRAGG 270 + + +R+ CA ++ GG Sbjct 239 DGVSPDP-------AVRTVRDECAAEIAHRGG 263 >gi|325675533|ref|ZP_08155217.1| hypothetical protein HMPREF0724_12999 [Rhodococcus equi ATCC 33707] gi|325553504|gb|EGD23182.1| hypothetical protein HMPREF0724_12999 [Rhodococcus equi ATCC 33707] Length=267 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 117/272 (44%), Positives = 143/272 (53%), Gaps = 23/272 (8%) Query 13 VLVAAAFGNQPGSWPLPT---AITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP- 68 +L+ AFG+ PG PLP + P WLRAVA GGQGRYA A L L R P Sbjct 1 MLLDVAFGSTPGRSPLPDPADSADPADRWLRAVALGGQGRYAQARAALDDLERRPGLDPA 60 Query 69 LASLAHSTQGSLLRQLGWHTLARGWDGRALALAGA----DR---EAGADALIGLAADALG 121 LASLA ST+ SLLRQLG H A +DG ALAL G+ DR EA DAL GLAADALG Sbjct 61 LASLASSTRASLLRQLGGHAKASEYDGAALALLGSSGPDDRRWHEARCDALTGLAADALG 120 Query 122 VGRFAAAGALLDRADPLVVSPLVAD---RLAVRRRWVAAELAMATGDGATAVRHAEEAVE 178 GR A LL+R + D R VR WV AE+A+A+GD ATA+ + AV Sbjct 121 CGRLALGRRLLERCAAHLAGVGDEDALWRQHVRLDWVTAEIALASGDFATAMIRTDSAV- 179 Query 179 LTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLL 238 ++ S RHR+KS ++ AAA RA L + GLLPLRWA A LL Sbjct 180 -ARSAEHPSVRHRLKSALLSAAAATGLPTPDRAIETARAVLADSGTHGLLPLRWAAAMLL 238 Query 239 IDIGTVTFSAQQLRELTKIRNICAGQVRRAGG 270 + + +R+ CA ++ GG Sbjct 239 DGVSPDP-------AVRTVRDECAAEIAHRGG 263 >gi|226305418|ref|YP_002765376.1| hypothetical protein RER_19290 [Rhodococcus erythropolis PR4] gi|226184533|dbj|BAH32637.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=282 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 113/270 (42%), Positives = 141/270 (53%), Gaps = 17/270 (6%) Query 1 VNETPHAPVVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVL 60 E+P+ P L +AAFG P LP + W AV GGQG YA A L VL Sbjct 12 FTESPNLP---GTLESAAFGADPDLDRLPAPCSTRDWWTTAVILGGQGHYARARAALDVL 68 Query 61 RRLVPAGP------LASLAHSTQGSLLRQLGWHTLARGWDGRALALAGA---DREAGADA 111 RL LASL+ ST+ S LRQ G H LA WDGRALA+ G D EA DA Sbjct 69 DRLTTGSSTHSDRVLASLSASTRASFLRQSGRHALASTWDGRALAIVGGLPVDPEAACDA 128 Query 112 LIGLAADALGVGRFAAAGALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVR 171 L GLAADALG GR LL + R +R WV+AELA+A GD A A R Sbjct 129 LTGLAADALGCGRLPLGWRLLGECRTRLGGEGGLWRQEIRIEWVSAELALAGGDFARARR 188 Query 172 HAEEAVELTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLR 231 HAE AVEL+ S RHRVKSD++ +AAL + + E L ++GLLPL Sbjct 189 HAERAVELSGKS--ESVRHRVKSDLLRSAALTGTDPSSAVESAA-EVLARCQQYGLLPLA 245 Query 232 WALACLL--IDIGTVTFSAQQLRELTKIRN 259 WA + L+ + G + SA+++ +L +R Sbjct 246 WASSLLIEGVSGGRTSPSAREIGDLIAMRG 275 >gi|254776789|ref|ZP_05218305.1| hypothetical protein MaviaA2_19281 [Mycobacterium avium subsp. avium ATCC 25291] Length=117 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/120 (66%), Positives = 90/120 (75%), Gaps = 7/120 (5%) Query 160 AMATGDGATAVRHAEEAVELTQAMAVASA----RHRVKSDVVLAAALCSAGAVARARAVG 215 AMA GDG AVR A EAVE A A +A RH+VKS+VVLAAALCSAG + RARAV Sbjct 1 AMARGDGELAVRRAGEAVEAAAATASGAAGAAARHQVKSEVVLAAALCSAGDIERARAVA 60 Query 216 EEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLRELTKIRNICAGQVRRAGGCWRTA 275 + AL TAR L+PLRWALACLLIDIG+V FS++QL E IR +CAGQVRRAGG WR+A Sbjct 61 DTALHTTARLRLVPLRWALACLLIDIGSVEFSSRQLHE---IREVCAGQVRRAGGTWRSA 117 >gi|317508303|ref|ZP_07965983.1| hypothetical protein HMPREF9336_02355 [Segniliparus rugosus ATCC BAA-974] gi|316253478|gb|EFV12868.1| hypothetical protein HMPREF9336_02355 [Segniliparus rugosus ATCC BAA-974] Length=258 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 102/239 (43%), Positives = 132/239 (56%), Gaps = 15/239 (6%) Query 13 VLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASL 72 +L +AAFG++PG+ PLP A TP WLRAVA G+G+YA A G+++ LR + L S Sbjct 1 MLTSAAFGDRPGAHPLPPAKTPFEQWLRAVALAGRGKYADATGEVAPLRESRYSAALRST 60 Query 73 AHSTQGSLLRQLGWHTLARGWDGRALAL-------AGADRE---AGADALIGLAADALGV 122 A S + S+LRQ G H A +D RALA D E A DAL G+AAD +G+ Sbjct 61 ALSLEASILRQQGCHERALQFDTRALAFLSERAPRQKEDPEFVLARCDALTGVAADNIGL 120 Query 123 GRFAAAGALLDRADPLVVSPLVAD---RLAVRRRWVAAELAMATGDGATAVRHAEEAVEL 179 G A LD+A+ L+ A R +R RWV+AE AMA G A+R A +L Sbjct 121 GSLADTRRALDQAETLLDEAESAPFGWRARLRWRWVSAEAAMAEGSPDDALRAAAAGQKL 180 Query 180 TQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLL 238 A + S RH KS ++LAAA A + A AR + E+ T GLLPL WA A LL Sbjct 181 --ADSCPSRRHACKSRLILAAAHACAASTATARTLAEDVFAKTEDAGLLPLAWAAAMLL 237 >gi|54022858|ref|YP_117100.1| hypothetical protein nfa8910 [Nocardia farcinica IFM 10152] gi|54014366|dbj|BAD55736.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=347 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 116/260 (45%), Positives = 140/260 (54%), Gaps = 31/260 (11%) Query 12 QVLVAAAFG--NQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPL 69 ++LV AAFG ++ + LPT P WLRAVA GG+G YA A +L+ +RR P L Sbjct 57 EILVDAAFGAGDRTAAAGLPTPPGPGAGWLRAVALGGRGHYAAARTELARVRRTGPDPVL 116 Query 70 ASLAHSTQGSLLRQLGWHTLARGWDGRALA-----LAGADR----------EAGADALIG 114 +L ST GSLLRQLGWH A +DGRA A LA A +A DAL G Sbjct 117 RALVDSTTGSLLRQLGWHAAAAEFDGRAAAAVVPHLARARHPAAPGLPDGVDAACDALTG 176 Query 115 LAADALGVGRFAAAGALLDRADPLV----------VSPLVADRLAVRRR--WVAAELAMA 162 LAADALGVGR A LLDR L+ + + DR VR R WVAAE A+A Sbjct 177 LAADALGVGRLDLARRLLDRTAALLDAHADTATTAGTADITDRTRVRIRLHWVAAETALA 236 Query 163 TGDGATAVRHAEEAVELTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDAT 222 GD A A HAE + L Q +S RHRVKS +++AA +AG A + A Sbjct 237 AGDAARARPHAEAGLRLAQDW--SSVRHRVKSRLLVAATAAAAGDRADSAARATAVAAEA 294 Query 223 ARFGLLPLRWALACLLIDIG 242 GLLPLRWA A LL +G Sbjct 295 RAHGLLPLRWAAAMLLAGVG 314 >gi|296394431|ref|YP_003659315.1| hypothetical protein Srot_2028 [Segniliparus rotundus DSM 44985] gi|296181578|gb|ADG98484.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=264 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 106/248 (43%), Positives = 122/248 (50%), Gaps = 21/248 (8%) Query 9 VVEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP 68 +V L AAFG QPG PLP A TP+ WLRAVA G+G Y A + LR+ Sbjct 5 LVNCALADAAFGGQPGLHPLPMAKTPYERWLRAVALAGRGSYTEAAENSKPLRKRNHPVE 64 Query 69 LASLAHSTQGSLLRQLGWHTLARGWDGRALALAGADREAGA--------DALIGLAADAL 120 L S A S S+LRQ G H A D ALAL + + DA G+AAD L Sbjct 65 LRSTALSLDASMLRQQGEHARALELDTHALALLPQQSRSESPELALARCDAATGIAADHL 124 Query 121 GVGRFAAAGALLDRADPLVVSPLVAD---RLAVRRRWVAAELAMATGDGATAVRHAEEAV 177 G+G F A L LV A R +R WV AE AMATGD A+R A+E Sbjct 125 GLGSFHTAQTALADVAALVDQAARAAFGWRAQMRWHWVTAETAMATGDFDGALRSAQENH 184 Query 178 ELTQAMAVASARHRVKSDVVLAAA--LCSAGAVA--RARAVGEEALDATARFGLLPLRWA 233 L A S RHRVKS +VLAAA L G A RA AV +A + GL PL WA Sbjct 185 GL--ARLCPSLRHRVKSQLVLAAAHFLAQGGGAAQVRANAVFHDAQTS----GLTPLAWA 238 Query 234 LACLLIDI 241 A LL I Sbjct 239 AAMLLHAI 246 >gi|343928275|ref|ZP_08767728.1| hypothetical protein GOALK_112_00120 [Gordonia alkanivorans NBRC 16433] gi|343761805|dbj|GAA14654.1| hypothetical protein GOALK_112_00120 [Gordonia alkanivorans NBRC 16433] Length=288 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 103/272 (38%), Positives = 130/272 (48%), Gaps = 41/272 (15%) Query 32 ITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLV-------PAGP----LASLAHSTQGSL 80 + P W AV AGG+G YA A +L+ L V P GP L SL ST SL Sbjct 11 MAPELRWKSAVEAGGRGEYAAALTELARLGEDVRSAHGSMPRGPGAAALLSLCRSTTASL 70 Query 81 LRQLGWHTLARGWDGRALA-LAGAD------------REAGADALIGLAADALGVGRFAA 127 LRQ G H L+ G DG A A +AG D R A ADALIGLAAD LG+ RF A Sbjct 71 LRQGGRHDLSLGLDGLAFATVAGIDPAPGGEAGVDPVRAARADALIGLAADNLGLLRFGA 130 Query 128 AGALLDRADPLVVSPL------------VADRLAVRRRWVAAELAMATGDGATAVRHAEE 175 + +LDRA L+ P R +R WV+AEL + +GD A + HAE Sbjct 131 SARVLDRARSLLSDPAEDWVSAPPVDWPTHGRCRLRWEWVSAELGLYSGDVAAGLAHAEA 190 Query 176 AVELTQAMAVAS---ARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRW 232 L + ++ S ARHRVK+ ++ AAAL G V + A + GLLPL W Sbjct 191 GDLLVRHLSDTSDVPARHRVKTSLIHAAALAGVGEVEASAARARNVVVDAGEHGLLPLEW 250 Query 233 ALACLLIDIGTVTFSAQQLRELTKIRNICAGQ 264 A LL G V S + + +R G+ Sbjct 251 AGLSLL--TGMVAASDSEEKRHRDLRATLIGK 280 >gi|229489535|ref|ZP_04383398.1| hypothetical protein RHOER0001_4439 [Rhodococcus erythropolis SK121] gi|229323632|gb|EEN89390.1| hypothetical protein RHOER0001_4439 [Rhodococcus erythropolis SK121] Length=232 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 102/229 (45%), Positives = 126/229 (56%), Gaps = 20/229 (8%) Query 45 GGQGRYAHAYGDLSVLRRLVPAGP------LASLAHSTQGSLLRQLGWHTLARGWDGRAL 98 GGQG YA A L VL RL LASL+ ST+ S LRQ G H LA WDGRAL Sbjct 3 GGQGHYARARAALDVLDRLTAGFSTHSDRVLASLSASTRASFLRQSGRHALASTWDGRAL 62 Query 99 ALAG---ADREAGADALIGLAADALGVGRFAAAGALLDRADPLVVSPLVADRLAVRRRWV 155 A+ G D EA DAL GLAADALG GR LL + + + R +R WV Sbjct 63 AIVGGLPGDPEAACDALTGLAADALGCGRLPLGWRLLAQCRARLDAEGGLWRQEIRIEWV 122 Query 156 AAELAMATGDGATAVRHAEEAVELTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVG 215 +AELA+A GD A A RHAE AVEL+ S RHRVKSD++ +AAL A A + Sbjct 123 SAELALAGGDFARARRHAERAVELSA--ESESVRHRVKSDLLRSAALTGTDASAAVKM-- 178 Query 216 EEALDATAR---FGLLPLRWALACLLIDIG--TVTFSAQQLRELTKIRN 259 A D AR +GLLPL WA + L+ + + SA+++ +L +R Sbjct 179 --AADVFARCRQYGLLPLAWASSLLIEGVSGERTSPSAREIGDLIAMRG 225 >gi|254776790|ref|ZP_05218306.1| hypothetical protein MaviaA2_19286 [Mycobacterium avium subsp. avium ATCC 25291] Length=90 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 57/82 (70%), Positives = 63/82 (77%), Gaps = 0/82 (0%) Query 10 VEQVLVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPL 69 V+++L AAFG++P WPLP A TP LWLRAVAAGGQGRY A DL+ LRR AG L Sbjct 9 VDRLLAEAAFGDRPDRWPLPAAGTPAQLWLRAVAAGGQGRYGAALHDLARLRRTATAGRL 68 Query 70 ASLAHSTQGSLLRQLGWHTLAR 91 ASLAHSTQGS LRQLGWH LAR Sbjct 69 ASLAHSTQGSFLRQLGWHALAR 90 >gi|333921688|ref|YP_004495269.1| hypothetical protein AS9A_4035 [Amycolicicoccus subflavus DQS3-9A1] gi|333483909|gb|AEF42469.1| hypothetical protein AS9A_4035 [Amycolicicoccus subflavus DQS3-9A1] Length=286 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 104/253 (42%), Positives = 132/253 (53%), Gaps = 30/253 (11%) Query 14 LVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDL--SVLRRLVPAGP--- 68 L + AFG P P P A TP WLR VA G G YA A L +V L GP Sbjct 11 LASVAFGATPVVPPFPRADTPERQWLRGVALGAAGFYAAAQAQLVENVRTPLGVRGPSVD 70 Query 69 --LASLAHSTQGSLLRQLGWHTLARGWDGRALALA-------------GADR---EAGAD 110 + SL+ ST S RQLG ++ A DG+AL LA GA+ EA D Sbjct 71 LAVRSLSFSTMASFQRQLGRYSAAATLDGQALQLATTASDTTVIRAADGAESQIAEAWCD 130 Query 111 ALIGLAADALGVGRFAAAGALLDRADPLVVSPLVAD-----RLAVRRRWVAAELAMATGD 165 A+ GLAADA+GV R AG LL+R D + V D R VRR WV ELA+ +G Sbjct 131 AITGLAADAIGVWRLGVAGRLLERLDEELERCDVGDSKRLWRQWVRRDWVRCELALYSGA 190 Query 166 GATAVRHAEEAVELTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARF 225 AT R+AE A + +A AS RH++KS++++AAAL + G + A + L A+ Sbjct 191 AATGRRYAESARD--RARRCASVRHQIKSELMVAAALSATGDASGASTLAARCLYASESH 248 Query 226 GLLPLRWALACLL 238 GL PL WA ACL+ Sbjct 249 GLYPLAWAAACLI 261 >gi|300782697|ref|YP_003762988.1| hypothetical protein AMED_0766 [Amycolatopsis mediterranei U32] gi|299792211|gb|ADJ42586.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340524068|gb|AEK39273.1| hypothetical protein RAM_03905 [Amycolatopsis mediterranei S699] Length=284 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 105/251 (42%), Positives = 128/251 (51%), Gaps = 31/251 (12%) Query 11 EQVLVAAAFGNQPGSWPLPTAI----TPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPA 66 E L AAAFG+ P P P + +P L A+ G QGRYA A L L R + Sbjct 3 EPALRAAAFGSDP--LPDPAVVRGPGSPRERLLAAIVLGAQGRYAAAATLLDALWR--GS 58 Query 67 GPL-ASLAHSTQGSLLRQLGWHTLARGWDGRALALAGA-DRE----------AGADALIG 114 P+ ASLA ST S RQLG H AR DG ALA A + D E A ADAL+G Sbjct 59 DPVTASLAASTLASHRRQLGGHRQARALDGEALAKAASLDTEQDPDGLDAAGARADALLG 118 Query 115 LAADALGVGRFAAAGALLDRADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAE 174 LAAD L +GR AA L R VR WV AE+A+A G GA AV HAE Sbjct 119 LAADNLALGRLTAARRLAA----QAAEEDAGWRGRVRGGWVGAEIALAAGQGADAVPHAE 174 Query 175 EAVELTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEE----ALDATARFGLLPL 230 A+E A+A ++ RH VKS +VLA AL +AGA R + ++ A+ A LL L Sbjct 175 RALE--TALARSARRHVVKSRIVLAVALRAAGAPDH-RNISDDLVGNAMAAAEECELLSL 231 Query 231 RWALACLLIDI 241 W A + D+ Sbjct 232 SWPAALVAADL 242 >gi|296138632|ref|YP_003645875.1| hypothetical protein Tpau_0902 [Tsukamurella paurometabola DSM 20162] gi|296026766|gb|ADG77536.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=291 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 92/240 (39%), Positives = 116/240 (49%), Gaps = 28/240 (11%) Query 17 AAFG---NQPGSWPLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASLA 73 AAFG PG+ P A+ WLRAV G+GR+A A + V GP AS A Sbjct 29 AAFGADAGDPGTVDSPAALA----WLRAVDLAGRGRFAAARSRCAA----VVTGPFASAA 80 Query 74 HSTQGSLLRQLGWHTLARGWDGRALALAGAD-REAGA------DALIGLAADALGVGRFA 126 + S+LRQ G H A DG A ALA R+ GA DAL+GLAADALGVGRF Sbjct 81 RCLEASMLRQSGGHRHASVSDGAAYALAAPLARDEGAAIAFRVDALVGLAADALGVGRFR 140 Query 127 AAGALLDRAD-------PLVVSP-LVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVE 178 A +L RAD P V P R ++RR WVAAELA+ +GD + R + Sbjct 141 LAATVLHRADAELSAGAPAVAYPWWTVPRASLRRDWVAAELAVYSGDADGSARALPALLA 200 Query 179 LTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEALDATARFGLLPLRWALACLL 238 A RH K+ ++ A+A + G RA + G PL+WA A L+ Sbjct 201 ADP--GAARPRHHAKTRLIAASAAAATGDPERAFDLARHGHAIATEGGFDPLQWAGAKLM 258 >gi|324998047|ref|ZP_08119159.1| hypothetical protein PseP1_04741 [Pseudonocardia sp. P1] Length=346 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 85/193 (45%), Positives = 96/193 (50%), Gaps = 22/193 (11%) Query 29 PTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGP-LASLAHSTQGSLLRQLGWH 87 P+AIT W AVA GG G YA A G L LRR P L + A T+ S LRQLG H Sbjct 36 PSAIT---RWAAAVALGGVGHYARAAGVLEALRRDPAVDPGLRAHALVTRASHLRQLGGH 92 Query 88 TLARGWDGRALALA-------GADREAG-------ADALIGLAADALGVGRFAAAGALLD 133 A DGRA LA G D G ADAL GLAADALG A A LLD Sbjct 93 AAATPLDGRAARLARGLGCPVGPDDPWGTGAVAAVADALTGLAADALGRFDAARAAVLLD 152 Query 134 RADPLVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRVK 193 RA P + R VR WV+AE A+ GD A+ A+ A L A + S RH +K Sbjct 153 RAGPWCGA--AGSRTRVRHDWVSAETALVAGDAGAALVAADRA--LAGARTLGSDRHVLK 208 Query 194 SDVVLAAALCSAG 206 S +V A A AG Sbjct 209 SRLVRAVAAGVAG 221 >gi|326381880|ref|ZP_08203573.1| hypothetical protein SCNU_03012 [Gordonia neofelifaecis NRRL B-59395] gi|326199306|gb|EGD56487.1| hypothetical protein SCNU_03012 [Gordonia neofelifaecis NRRL B-59395] Length=280 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 73/193 (38%), Positives = 96/193 (50%), Gaps = 31/193 (16%) Query 69 LASLAHSTQGSLLRQLGWHTLARGWDGRALALAG--ADRE----AGADALIGLAADALGV 122 + SLA +T+ SL RQ G H AR DG AL++ A E A DALIGLAADALG+ Sbjct 56 VVSLALATRASLTRQAGRHASARVDDGAALSVLARCAHDEWTTAARVDALIGLAADALGI 115 Query 123 GRFAAAGALLDRADPLVVSP------------LVADRLAVRRRWVAAELAMATGDGATAV 170 G F + LLDRA+ + +V RL +R WV ELA+ +GD Sbjct 116 GDFGGSRRLLDRAEAELRRRGTGRGGADRPQWVVDGRLGLREAWVRTELALYSGDATAG- 174 Query 171 RHAEEAVELTQAMAVASARHRVKSDVVLAAALCSAG-----AVARARAVGEEALDATARF 225 A +A + S+RHR K+ +++AAA ++G AV AR G Sbjct 175 --GLAAEAAERAESAPSSRHRTKTSLIVAAATAASGDGEVAAVEAARIAG-----TCEAA 227 Query 226 GLLPLRWALACLL 238 GLLPL WA +L Sbjct 228 GLLPLEWAARTML 240 >gi|262201669|ref|YP_003272877.1| hypothetical protein Gbro_1722 [Gordonia bronchialis DSM 43247] gi|262085016|gb|ACY20984.1| hypothetical protein Gbro_1722 [Gordonia bronchialis DSM 43247] Length=250 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 86/227 (38%), Positives = 110/227 (49%), Gaps = 32/227 (14%) Query 69 LASLAHSTQGSLLRQLGWHTLARGWDGRALALA------------GADREAGADALIGLA 116 L SLA ST SL RQ G H A DGRALA A R A +DAL+GLA Sbjct 21 LRSLAWSTAASLHRQAGRHRAAHILDGRALAAAAPFVAPQCRVRHDLGRAALSDALVGLA 80 Query 117 ADALGVGRFAAAGALLDRADPLVVS-----PLVAD--------RLAVRRRWVAAELAMAT 163 AD LG+ R A+ LLDR D L+ P D R +R RWV AELAM Sbjct 81 ADNLGLMRLTASQRLLDRCDVLLADLDTEHPGRWDHRQWETGGRGWLRSRWVRAELAMYF 140 Query 164 GDGATAVRHAEEAVELTQAMAVA-SARHRVKSDVVLAAALCSAGAVARARAVGEEALDAT 222 G G AV + AV T + + RHR+K+ ++ AAA +AG + R+ A + D Sbjct 141 GVGTQAVEISGAAVAATDEITDGITPRHRIKTRLIAAAADAAAGDLDRSAARARQLADHA 200 Query 223 ARFGLLPLRWALACLLIDIGTVTFSAQQLRELTKIRNICAGQVRRAG 269 GL PL+WA LL G + + L L +R+ ++RR G Sbjct 201 REEGLGPLQWAALSLLAGTGAASQIERDL--LVNLRD----RLRRQG 241 >gi|257054539|ref|YP_003132371.1| hypothetical protein Svir_04690 [Saccharomonospora viridis DSM 43017] gi|256584411|gb|ACU95544.1| hypothetical protein Svir_04690 [Saccharomonospora viridis DSM 43017] Length=297 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 87/227 (39%), Positives = 107/227 (48%), Gaps = 23/227 (10%) Query 34 PHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPLASLAHSTQGSLLRQLGWHTLARGW 93 P WL AV G GRYA A L L R +ASLA ST S RQLG H LA Sbjct 36 PRCRWLAAVVLGACGRYAAATTLLEPLIRDRDV-VVASLAASTLASHRRQLGGHALALSL 94 Query 94 DGRAL-----ALAG-----------ADREAGADALIGLAADALGVGRFAAAGALLDRADP 137 DG A+ AL+G A D L+GLAAD LG+GR A A LL RA Sbjct 95 DGLAVRKAVEALSGRWDGDGDPDGLDVYGALVDGLVGLAADNLGLGRLATAEVLLARAAR 154 Query 138 LVVSPLVADRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRVKSDVV 197 + R R WV AELA+A+G A +V A+ A E+ + S RH VKS+++ Sbjct 155 VAAVGGCW-RAEARLGWVRAELALASGGVADSVSPAKRAREVARER--GSVRHVVKSELI 211 Query 198 LAAALCSAGAVARARAVGE---EALDATARFGLLPLRWALACLLIDI 241 L AAL + G + + AL R+G L W LL D+ Sbjct 212 LGAALGAMGEQENGKQATKLVTNALTTARRYGWRSLIWPAQLLLFDL 258 >gi|331699104|ref|YP_004335343.1| hypothetical protein Psed_5356 [Pseudonocardia dioxanivorans CB1190] gi|326953793|gb|AEA27490.1| hypothetical protein Psed_5356 [Pseudonocardia dioxanivorans CB1190] Length=395 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 88/209 (43%), Positives = 102/209 (49%), Gaps = 23/209 (11%) Query 45 GGQGRYAHAYGDLSVLRR-LVPAGPLASLAHSTQGSLLRQLGWHTLARGWDGR------- 96 GGQGRYA A L LRR A +A+ A T S RQLG H AR D Sbjct 41 GGQGRYAAAAMLLDGLRRDPAVAPVVAAHAAVTLASHRRQLGGHAAARRLDAEALARAAA 100 Query 97 ---ALALAGADREAGA---DALIGLAADALGVGRFAAAGALLDRADPLVV-----SPLVA 145 ++ + G A A DAL+GLAADALG G A A LLDRAD + A Sbjct 101 GPPSVVVPGGLLTAAAAHVDALVGLAADALGTGDLAGARRLLDRADAELSRRRCREDAAA 160 Query 146 DRLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRVKSDVVLAAALCS- 204 RL VR WVAAELA+A G A A +A S+RHRVKS +V + S Sbjct 161 WRLPVRLGWVAAELALAG--GDPAAAVRAAADADRRASGGRSSRHRVKSAIVAGVSRASW 218 Query 205 AGAVARARAVGEEALDATA-RFGLLPLRW 232 + A A V +AL A A R GLLPL W Sbjct 219 EPSTAPAALVELDALAAEATRLGLLPLHW 247 >gi|302524081|ref|ZP_07276423.1| predicted protein [Streptomyces sp. AA4] gi|302432976|gb|EFL04792.1| predicted protein [Streptomyces sp. AA4] Length=295 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 97/254 (39%), Positives = 117/254 (47%), Gaps = 44/254 (17%) Query 11 EQVLVAAAFGNQPGSW-PLPTAITPHHLWLRAVAAGGQGRYAHAYGDLSVLRRLVPAGPL 69 E+ L A AFG+ GS P+P +P L A+ G +GRYA A L LRR PL Sbjct 3 EEALTALAFGSDAGSSDPIPRDGSPRERLLAAIVLGARGRYAAAADLLDPLRR--GRDPL 60 Query 70 -ASLAHSTQGSLLRQLGWHTLARGWDGRALALAGA------------------------- 103 ASLA ST S RQLG H AR DG AL G Sbjct 61 TASLAASTLASHRRQLGAHVAARKLDGEALLKIGLRDAGAPAPTPARAASGGAAQEDPHG 120 Query 104 -DRE-AGADALIGLAADALGVGRFAAAGALLDRADPLVVSPLVAD---RLAVRRRWVAAE 158 DR+ A ADAL+GLAAD L +GR +AA L + AD R +R WV AE Sbjct 121 LDRQGARADALLGLAADNLALGRISAARR-------LAIRAAQADRRWRANIRGGWVGAE 173 Query 159 LAMATGDGATAVRHAEEAVELTQAMAVASARHRVKSDVVLAAALCSAGAVARARAVGEEA 218 + +A G AV A A E A+A + RH VKS +VL AL +AG V A Sbjct 174 IELADGHPEAAVAPARLAYE--TAVARHARRHIVKSGIVLGVALLAAGQDGARELVLAAA 231 Query 219 LDATARFGLLPLRW 232 DA ++ L L W Sbjct 232 ADAE-KYELDSLSW 244 >gi|254818891|ref|ZP_05223892.1| hypothetical protein MintA_03144 [Mycobacterium intracellulare ATCC 13950] Length=33 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/33 (70%), Positives = 26/33 (79%), Gaps = 0/33 (0%) Query 14 LVAAAFGNQPGSWPLPTAITPHHLWLRAVAAGG 46 + AAFG+ PG WPLP+A TP LWLRAVAAGG Sbjct 1 MADAAFGDGPGDWPLPSATTPAQLWLRAVAAGG 33 >gi|256380526|ref|YP_003104186.1| hypothetical protein Amir_6540 [Actinosynnema mirum DSM 43827] gi|255924829|gb|ACU40340.1| hypothetical protein Amir_6540 [Actinosynnema mirum DSM 43827] Length=516 Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust. Identities = 46/132 (35%), Positives = 66/132 (50%), Gaps = 5/132 (3%) Query 147 RLAVRRRWVAAELAMATGDGATAVRHAEEAVELTQAMAVASARHRVKSDVVLAAALC--- 203 R VR W+AAE+A+A+G A AV HAE A+ L QA RH +KS +VL AL Sbjct 358 RTLVRHHWIAAEIALASGVPAEAVPHAEAALALAQAR--GGMRHILKSRLVLGTALVVWA 415 Query 204 SAGAVARARAVGEEALDATARFGLLPLRWALACLLIDIGTVTFSAQQLRELTKIRNICAG 263 + +V R + L+ TAR L L W A +L V +A++ +L + N + Sbjct 416 TPESVRRGTELLACDLNHTARLLLFSLSWPTALVLATNSPVRTTAERHDDLDRAANALSC 475 Query 264 QVRRAGGCWRTA 275 + R+ R A Sbjct 476 VLLRSTPASRRA 487 >gi|117927573|ref|YP_872124.1| hypothetical protein Acel_0364 [Acidothermus cellulolyticus 11B] gi|117648036|gb|ABK52138.1| hypothetical protein Acel_0364 [Acidothermus cellulolyticus 11B] Length=320 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 50/143 (35%), Positives = 62/143 (44%), Gaps = 24/143 (16%) Query 38 WLRAVAAGGQGRYAHAYGDLSVL----------RRLVPAGPL-ASLAHSTQGSLLRQLGW 86 WL VA GR+ A+ L + P L SLA ++ S RQLG Sbjct 59 WLLGVAYTALGRFGTAFAVLDPITAPLYAAVSGEETAPEQCLFGSLAAASIASGYRQLGQ 118 Query 87 HTLARGWDGRALALAGA---DREAGADALIGLAADALGVGRFAAAGALLDRADPLVVSPL 143 H AR +D L AGA EA D +GLA DA+G+G A R + VV+ L Sbjct 119 HATAREFDALGLTAAGALPGLDEAIFDCRLGLACDAIGLGELETA-----RRELAVVTDL 173 Query 144 VAD-----RLAVRRRWVAAELAM 161 V R VR W AELA+ Sbjct 174 VEAHPDWWRQRVRLDWARAELAL 196 Lambda K H 0.322 0.133 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 432410969436 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40