BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3416
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610552|ref|NP_217933.1| transcriptional regulatory protein ... 211 4e-53
gi|254366025|ref|ZP_04982070.1| transcriptional regulatory prote... 209 1e-52
gi|183981153|ref|YP_001849444.1| WhiB-like regulatory protein, W... 199 8e-50
gi|118616663|ref|YP_904995.1| Whib-like regulatory protein, WhiB... 197 3e-49
gi|296168779|ref|ZP_06850465.1| WhiB3 family protein [Mycobacter... 195 2e-48
gi|240167832|ref|ZP_04746491.1| WhiB-like regulatory protein, Wh... 195 2e-48
gi|41410371|ref|NP_963207.1| WhiB3 [Mycobacterium avium subsp. p... 193 7e-48
gi|342861907|ref|ZP_08718552.1| WhiB3 [Mycobacterium colombiense... 192 2e-47
gi|254818890|ref|ZP_05223891.1| WhiB3 [Mycobacterium intracellul... 188 3e-46
gi|15827111|ref|NP_301374.1| transcriptional regulator [Mycobact... 187 4e-46
gi|145225490|ref|YP_001136168.1| transcription factor WhiB [Myco... 174 5e-42
gi|120402515|ref|YP_952344.1| transcription factor WhiB [Mycobac... 174 6e-42
gi|108798133|ref|YP_638330.1| transcription factor WhiB [Mycobac... 173 9e-42
gi|118471283|ref|YP_885976.1| transcription factor WhiB [Mycobac... 171 4e-41
gi|169630805|ref|YP_001704454.1| WhiB family transcriptional reg... 162 1e-38
gi|111023156|ref|YP_706128.1| WhiB family transcriptional regula... 154 4e-36
gi|336326369|ref|YP_004606335.1| WhiB family transcription regul... 154 4e-36
gi|226305417|ref|YP_002765375.1| WhiB family regulatory protein ... 153 8e-36
gi|118462777|ref|YP_883496.1| transcription factor WhiB [Mycobac... 152 1e-35
gi|68536817|ref|YP_251522.1| WhiB family transcriptional regulat... 150 8e-35
gi|260579175|ref|ZP_05847065.1| WhiB-related protein [Corynebact... 150 9e-35
gi|289449115|ref|ZP_06438859.1| transcriptional regulator whib-l... 149 2e-34
gi|312140831|ref|YP_004008167.1| whib-like transcriptional regul... 147 4e-34
gi|54022857|ref|YP_117099.1| putative transcriptional regulator ... 146 1e-33
gi|227549901|ref|ZP_03979950.1| transcription factor WhiB [Coryn... 145 2e-33
gi|300779763|ref|ZP_07089619.1| WhiB family transcriptional regu... 143 8e-33
gi|227487034|ref|ZP_03917350.1| WhiB family transcriptional regu... 142 2e-32
gi|213964773|ref|ZP_03392972.1| transcription factor WhiB [Coryn... 139 1e-31
gi|296394430|ref|YP_003659314.1| transcription factor WhiB [Segn... 139 1e-31
gi|262201668|ref|YP_003272876.1| transcription factor WhiB [Gord... 138 3e-31
gi|343928274|ref|ZP_08767727.1| putative WhiB family regulatory ... 137 5e-31
gi|19551833|ref|NP_599835.1| hypothetical protein NCgl0574 [Cory... 136 8e-31
gi|227832305|ref|YP_002834012.1| WhiB transcriptional regulator ... 136 8e-31
gi|340795246|ref|YP_004760709.1| putative WhiB transcription reg... 135 2e-30
gi|259506705|ref|ZP_05749607.1| transcription regulator WhiB3 [C... 135 3e-30
gi|25027160|ref|NP_737214.1| putative transcription regulator Wh... 135 3e-30
gi|255323978|ref|ZP_05365104.1| transcription factor WhiB [Coryn... 134 4e-30
gi|227502736|ref|ZP_03932785.1| WhiB family transcriptional regu... 132 2e-29
gi|326381879|ref|ZP_08203572.1| WhiB family regulatory protein [... 132 2e-29
gi|324998046|ref|ZP_08119158.1| Transcription factor WhiB [Pseud... 130 7e-29
gi|296138631|ref|YP_003645874.1| transcription factor WhiB [Tsuk... 129 1e-28
gi|256390214|ref|YP_003111778.1| transcription factor WhiB [Cate... 129 2e-28
gi|329938173|ref|ZP_08287624.1| Sporulation regulatory protein W... 128 3e-28
gi|29831540|ref|NP_826174.1| WhiB-family transcriptional regulat... 127 5e-28
gi|302553612|ref|ZP_07305954.1| WhiB-family transcriptional regu... 127 5e-28
gi|294630966|ref|ZP_06709526.1| WhiB protein [Streptomyces sp. e... 127 5e-28
gi|311896509|dbj|BAJ28917.1| putative WhiB family transcriptiona... 127 6e-28
gi|302558924|ref|ZP_07311266.1| conserved hypothetical protein [... 127 6e-28
gi|328884499|emb|CCA57738.1| Sporulation regulatory protein WhiD... 127 6e-28
gi|111021799|ref|YP_704771.1| WhiB family transcriptional regula... 127 7e-28
>gi|15610552|ref|NP_217933.1| transcriptional regulatory protein WHIB-like WHIB3 [Mycobacterium
tuberculosis H37Rv]
gi|15843012|ref|NP_338049.1| WhiB-related protein [Mycobacterium tuberculosis CDC1551]
gi|31794597|ref|NP_857090.1| transcriptional regulatory protein WHIB-like WHIB3 [Mycobacterium
bovis AF2122/97]
76 more sequence titles
Length=102
Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/102 (100%), Positives = 102/102 (100%), Gaps = 0/102 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE
Sbjct 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA
Sbjct 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
>gi|254366025|ref|ZP_04982070.1| transcriptional regulatory protein whib-like whiB3 [Mycobacterium
tuberculosis str. Haarlem]
gi|134151538|gb|EBA43583.1| transcriptional regulatory protein whib-like whiB3 [Mycobacterium
tuberculosis str. Haarlem]
Length=102
Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/102 (99%), Positives = 102/102 (100%), Gaps = 0/102 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQPEQLPGPNADIWNWQL+GLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE
Sbjct 1 MPQPEQLPGPNADIWNWQLRGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA
Sbjct 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
>gi|183981153|ref|YP_001849444.1| WhiB-like regulatory protein, WhiB3 [Mycobacterium marinum M]
gi|183174479|gb|ACC39589.1| WhiB-like regulatory protein, WhiB3 [Mycobacterium marinum M]
Length=102
Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 96/102 (95%), Positives = 99/102 (98%), Gaps = 0/102 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQPEQLPGPNADIWNWQLQGLCRG+DSSMFFHPDGERGRAR QREQRAKEMCRRCPVIE
Sbjct 1 MPQPEQLPGPNADIWNWQLQGLCRGVDSSMFFHPDGERGRARMQREQRAKEMCRRCPVIE 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CRSHAL+VGEPYGVWGGLSESERDLLLKG +GRTRGIRRTA
Sbjct 61 ECRSHALDVGEPYGVWGGLSESERDLLLKGGIGRTRGIRRTA 102
>gi|118616663|ref|YP_904995.1| Whib-like regulatory protein, WhiB3 [Mycobacterium ulcerans Agy99]
gi|118568773|gb|ABL03524.1| Whib-like regulatory protein, WhiB3 [Mycobacterium ulcerans Agy99]
Length=102
Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 95/102 (94%), Positives = 99/102 (98%), Gaps = 0/102 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQPEQLPGPNADIWNWQLQGLCRG+DSSMFFHPDGERGRAR QREQRAKEMCRRCPVIE
Sbjct 1 MPQPEQLPGPNADIWNWQLQGLCRGVDSSMFFHPDGERGRARMQREQRAKEMCRRCPVIE 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CRSHAL+VGEP+GVWGGLSESERDLLLKG +GRTRGIRRTA
Sbjct 61 ECRSHALDVGEPHGVWGGLSESERDLLLKGGIGRTRGIRRTA 102
>gi|296168779|ref|ZP_06850465.1| WhiB3 family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896540|gb|EFG76185.1| WhiB3 family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=102
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/102 (92%), Positives = 98/102 (97%), Gaps = 0/102 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQPEQLPGPNADIWNWQLQGLCRG+DSSMFFHPDGERGRAR QRE RAKEMCR+CPVI+
Sbjct 1 MPQPEQLPGPNADIWNWQLQGLCRGVDSSMFFHPDGERGRARMQRELRAKEMCRQCPVIQ 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CRSHALEVGEPYGVWGGLSESERDLLLKG +GRTRGIRR+A
Sbjct 61 ECRSHALEVGEPYGVWGGLSESERDLLLKGDIGRTRGIRRSA 102
>gi|240167832|ref|ZP_04746491.1| WhiB-like regulatory protein, WhiB3 [Mycobacterium kansasii ATCC
12478]
Length=102
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/102 (92%), Positives = 98/102 (97%), Gaps = 0/102 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQPEQLPGPNADIWNWQLQGLCRG+DSSMFFHPDGERGRAR REQRAKEMCRRCPVIE
Sbjct 1 MPQPEQLPGPNADIWNWQLQGLCRGVDSSMFFHPDGERGRARMLREQRAKEMCRRCPVIE 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CRSHAL+VGEPYGVWGGLSESERDLLLKG +GR+RGIRR+A
Sbjct 61 QCRSHALDVGEPYGVWGGLSESERDLLLKGGIGRSRGIRRSA 102
>gi|41410371|ref|NP_963207.1| WhiB3 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|254776791|ref|ZP_05218307.1| WhiB3 [Mycobacterium avium subsp. avium ATCC 25291]
gi|41399205|gb|AAS06823.1| WhiB3 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336459757|gb|EGO38675.1| Transcription factor WhiB [Mycobacterium avium subsp. paratuberculosis
S397]
Length=102
Score = 193 bits (491), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 92/102 (91%), Positives = 97/102 (96%), Gaps = 0/102 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQPEQLPGPNADIWNWQL GLCRG+DSSMFFHPDGERGRAR QREQRAKEMCR+CPVI+
Sbjct 1 MPQPEQLPGPNADIWNWQLHGLCRGVDSSMFFHPDGERGRARMQREQRAKEMCRQCPVIQ 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CRSHALEVGEPYGVWGGLSESERDLLLKG +GR RGIRR+A
Sbjct 61 ECRSHALEVGEPYGVWGGLSESERDLLLKGEIGRGRGIRRSA 102
>gi|342861907|ref|ZP_08718552.1| WhiB3 [Mycobacterium colombiense CECT 3035]
gi|342130724|gb|EGT84028.1| WhiB3 [Mycobacterium colombiense CECT 3035]
Length=102
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/102 (90%), Positives = 97/102 (96%), Gaps = 0/102 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQPEQLPGPNADIWNWQLQG+CRG+DSSMFFHPDGERGRAR QREQRAKEMCR+CPVI+
Sbjct 1 MPQPEQLPGPNADIWNWQLQGVCRGVDSSMFFHPDGERGRARMQREQRAKEMCRQCPVIQ 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CRSHALEVGEPYGVWGGLSESERDLLLKG +GR R IRR+A
Sbjct 61 ECRSHALEVGEPYGVWGGLSESERDLLLKGDIGRGRTIRRSA 102
>gi|254818890|ref|ZP_05223891.1| WhiB3 [Mycobacterium intracellulare ATCC 13950]
Length=100
Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/102 (90%), Positives = 97/102 (96%), Gaps = 2/102 (1%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQPEQLPGPNADIWNWQLQGLCRG+DS+MFFHPDGERGRAR QREQRAKEMCR+CPVI+
Sbjct 1 MPQPEQLPGPNADIWNWQLQGLCRGVDSAMFFHPDGERGRARMQREQRAKEMCRQCPVIQ 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CRSHALEVGEPYGVWGGLSESERDLLLKG +G RGIRR+A
Sbjct 61 ECRSHALEVGEPYGVWGGLSESERDLLLKGDIG--RGIRRSA 100
>gi|15827111|ref|NP_301374.1| transcriptional regulator [Mycobacterium leprae TN]
gi|221229589|ref|YP_002503005.1| putative transcriptional regulator [Mycobacterium leprae Br4923]
gi|466960|gb|AAC43248.1| whiB [Mycobacterium leprae]
gi|467131|gb|AAA17313.1| whiB [Mycobacterium leprae]
gi|13092659|emb|CAC29890.1| putative transcriptional regulator [Mycobacterium leprae]
gi|219932696|emb|CAR70475.1| putative transcriptional regulator [Mycobacterium leprae Br4923]
Length=102
Score = 187 bits (476), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/102 (87%), Positives = 95/102 (94%), Gaps = 0/102 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP+QLPGPNA IWNWQLQGLCRG+DSSMFFHPDGERGRAR QREQRAKEMCRRCPVIE
Sbjct 1 MPQPKQLPGPNATIWNWQLQGLCRGVDSSMFFHPDGERGRARMQREQRAKEMCRRCPVIE 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CR+HAL+VGEPYGVWGGLSESERDLLLKG + R+R I R+A
Sbjct 61 ECRAHALDVGEPYGVWGGLSESERDLLLKGDLARSRSIPRSA 102
>gi|145225490|ref|YP_001136168.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK]
gi|315445843|ref|YP_004078722.1| transcription factor WhiB [Mycobacterium sp. Spyr1]
gi|145217976|gb|ABP47380.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK]
gi|315264146|gb|ADU00888.1| Transcription factor WhiB [Mycobacterium sp. Spyr1]
Length=96
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/102 (82%), Positives = 91/102 (90%), Gaps = 6/102 (5%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP+QLPGPNADIW+WQ+QG+CRG+DS+MFFHPDGERGRAR QRE RAKEMCRRCPVI
Sbjct 1 MPQPQQLPGPNADIWDWQMQGVCRGVDSAMFFHPDGERGRARAQREMRAKEMCRRCPVIA 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CRSHAL VGEPYG+WGGLSESER+LLLK RGIRRTA
Sbjct 61 QCRSHALAVGEPYGIWGGLSESERELLLK------RGIRRTA 96
>gi|120402515|ref|YP_952344.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
gi|119955333|gb|ABM12338.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
Length=96
Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/102 (82%), Positives = 91/102 (90%), Gaps = 6/102 (5%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP+QLPGPNADIW+WQ+QG+CRG+DSSMFFHPDGERGRAR QRE RAKEMCRRCPVI
Sbjct 1 MPQPQQLPGPNADIWDWQIQGVCRGVDSSMFFHPDGERGRARAQREMRAKEMCRRCPVIT 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CRSHAL VGEPYG+WGGLSESER+LLLK RGIRR+A
Sbjct 61 QCRSHALAVGEPYGIWGGLSESERELLLK------RGIRRSA 96
>gi|108798133|ref|YP_638330.1| transcription factor WhiB [Mycobacterium sp. MCS]
gi|119867229|ref|YP_937181.1| transcription factor WhiB [Mycobacterium sp. KMS]
gi|126433792|ref|YP_001069483.1| transcription factor WhiB [Mycobacterium sp. JLS]
gi|108768552|gb|ABG07274.1| transcription factor WhiB [Mycobacterium sp. MCS]
gi|119693318|gb|ABL90391.1| transcription factor WhiB [Mycobacterium sp. KMS]
gi|126233592|gb|ABN96992.1| transcription factor WhiB [Mycobacterium sp. JLS]
Length=96
Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 83/102 (82%), Positives = 90/102 (89%), Gaps = 6/102 (5%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP+QLPGPNADIW+WQ+ GLCRG+DSSMFFHPDGERGRAR QRE RAKEMCRRCPVI
Sbjct 1 MPQPQQLPGPNADIWDWQMHGLCRGVDSSMFFHPDGERGRARAQREMRAKEMCRRCPVIA 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CRSHAL VGEPYG+WGGLSESER++LLK RGIRRTA
Sbjct 61 QCRSHALAVGEPYGIWGGLSESEREMLLK------RGIRRTA 96
>gi|118471283|ref|YP_885976.1| transcription factor WhiB [Mycobacterium smegmatis str. MC2 155]
gi|4377975|gb|AAD19334.1| WhiB3 [Mycobacterium smegmatis str. MC2 155]
gi|118172570|gb|ABK73466.1| Transcription factor WhiB [Mycobacterium smegmatis str. MC2 155]
Length=96
Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/102 (81%), Positives = 90/102 (89%), Gaps = 6/102 (5%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP+QLPGPNADIW+WQ++GLCRG+DSSMFFHPDGERGRAR QRE RAKEMCR CPVI
Sbjct 1 MPQPQQLPGPNADIWDWQMRGLCRGVDSSMFFHPDGERGRARAQREMRAKEMCRSCPVIA 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CRSHAL VGEPYG+WGGLSESER+LLLK RGIRR+A
Sbjct 61 QCRSHALAVGEPYGIWGGLSESERELLLK------RGIRRSA 96
>gi|169630805|ref|YP_001704454.1| WhiB family transcriptional regulator [Mycobacterium abscessus
ATCC 19977]
gi|169242772|emb|CAM63800.1| Putative transcriptional regulator, WhiB family [Mycobacterium
abscessus]
Length=96
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/102 (73%), Positives = 89/102 (88%), Gaps = 6/102 (5%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP+QLPGPNADIW+WQ++G+CRG+DSS+FFHPDGERGRAR QRE +AKEMCR CPV+
Sbjct 1 MPQPQQLPGPNADIWDWQMKGVCRGVDSSVFFHPDGERGRARAQREMKAKEMCRACPVLV 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CR+HAL V EPYG+WGGLSESER+L+L+ RG+RRTA
Sbjct 61 QCRAHALAVAEPYGIWGGLSESERELILR------RGVRRTA 96
>gi|111023156|ref|YP_706128.1| WhiB family transcriptional regulator [Rhodococcus jostii RHA1]
gi|226365662|ref|YP_002783445.1| WhiB family regulatory protein [Rhodococcus opacus B4]
gi|110822686|gb|ABG97970.1| possible transcriptional regulator, WhiB family protein [Rhodococcus
jostii RHA1]
gi|226244152|dbj|BAH54500.1| WhiB family regulatory protein [Rhodococcus opacus B4]
Length=97
Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/95 (72%), Positives = 79/95 (84%), Gaps = 0/95 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MP P LPGPNADIW+WQ+ GLCRG+DSSMFFHPDGERGRAR QRE RAKEMCRRCPV+
Sbjct 1 MPAPNHLPGPNADIWDWQMHGLCRGVDSSMFFHPDGERGRARAQRETRAKEMCRRCPVLA 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRT 95
CR+HAL V EPYG+WGG+SE+ER++ + GR
Sbjct 61 QCRNHALSVSEPYGIWGGMSETEREMHARHRRGRI 95
>gi|336326369|ref|YP_004606335.1| WhiB family transcription regulator [Corynebacterium resistens
DSM 45100]
gi|336102351|gb|AEI10171.1| WhiB family transcription regulator [Corynebacterium resistens
DSM 45100]
Length=107
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/99 (72%), Positives = 80/99 (81%), Gaps = 1/99 (1%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP QLPGP + W WQL+G CRG DSS+FFHPDGERGRAR REQRAK +C CPVIE
Sbjct 1 MPQPNQLPGPTSSFWEWQLKGSCRGADSSIFFHPDGERGRARAMREQRAKAICNTCPVIE 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIR 99
ACRSHAL VGEPYG+WGG++ESERD +L+ T R RG R
Sbjct 61 ACRSHALSVGEPYGIWGGMTESERDAILRPT-ARNRGRR 98
>gi|226305417|ref|YP_002765375.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4]
gi|229489583|ref|ZP_04383446.1| transcription factor WhiB [Rhodococcus erythropolis SK121]
gi|226184532|dbj|BAH32636.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4]
gi|229323680|gb|EEN89438.1| transcription factor WhiB [Rhodococcus erythropolis SK121]
Length=98
Score = 153 bits (386), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 67/86 (78%), Positives = 76/86 (89%), Gaps = 0/86 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MP P LPGPNADIW+WQ+ GLCRG+DSSMFFHPDGERGRAR QRE RAKEMCR+CPV+
Sbjct 1 MPAPNHLPGPNADIWDWQMHGLCRGVDSSMFFHPDGERGRARAQRETRAKEMCRQCPVLM 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDL 86
CRSHAL V EPYG+WGG+SE+ER+L
Sbjct 61 QCRSHALTVAEPYGIWGGMSETEREL 86
>gi|118462777|ref|YP_883496.1| transcription factor WhiB [Mycobacterium avium 104]
gi|118164064|gb|ABK64961.1| Transcription factor WhiB [Mycobacterium avium 104]
Length=84
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/84 (87%), Positives = 79/84 (95%), Gaps = 0/84 (0%)
Query 19 LQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIEACRSHALEVGEPYGVWGG 78
+ GLCRG+DSSMFFHPDGERGRAR QREQRAKEMCR+CPVI+ CRSHALEVGEPYGVWGG
Sbjct 1 MHGLCRGVDSSMFFHPDGERGRARMQREQRAKEMCRQCPVIQECRSHALEVGEPYGVWGG 60
Query 79 LSESERDLLLKGTMGRTRGIRRTA 102
LSESERDLLLKG +GR RGIRR+A
Sbjct 61 LSESERDLLLKGEIGRGRGIRRSA 84
>gi|68536817|ref|YP_251522.1| WhiB family transcriptional regulator [Corynebacterium jeikeium
K411]
gi|68264416|emb|CAI37904.1| putative transcriptional regulator (WhiB family) [Corynebacterium
jeikeium K411]
Length=101
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 67/91 (74%), Positives = 74/91 (82%), Gaps = 0/91 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP QLPGP + W WQL G CRG DSS+FFHPDGERGRAR RE RAK +CR CPVIE
Sbjct 1 MPQPSQLPGPASSTWEWQLHGACRGADSSVFFHPDGERGRARAMREHRAKAICRECPVIE 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGT 91
CR+HAL VGEPYG+WGGLSESERD +L+ T
Sbjct 61 QCRNHALSVGEPYGIWGGLSESERDAILRPT 91
>gi|260579175|ref|ZP_05847065.1| WhiB-related protein [Corynebacterium jeikeium ATCC 43734]
gi|258602661|gb|EEW15948.1| WhiB-related protein [Corynebacterium jeikeium ATCC 43734]
Length=101
Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 67/91 (74%), Positives = 74/91 (82%), Gaps = 0/91 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP QLPGP + W WQL G CRG DSS+FFHPDGERGRAR RE RAK +CR CPVIE
Sbjct 1 MPQPSQLPGPASSTWEWQLHGACRGADSSVFFHPDGERGRARAMREHRAKAICRECPVIE 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGT 91
CR+HAL VGEPYG+WGGLSESERD +L+ T
Sbjct 61 QCRNHALSVGEPYGIWGGLSESERDAILRPT 91
>gi|289449115|ref|ZP_06438859.1| transcriptional regulator whib-like whiB3 [Mycobacterium tuberculosis
CPHL_A]
gi|289422073|gb|EFD19274.1| transcriptional regulator whib-like whiB3 [Mycobacterium tuberculosis
CPHL_A]
Length=70
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/70 (100%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE
Sbjct 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
Query 61 ACRSHALEVG 70
ACRSHALEVG
Sbjct 61 ACRSHALEVG 70
>gi|312140831|ref|YP_004008167.1| whib-like transcriptional regulator [Rhodococcus equi 103S]
gi|325675532|ref|ZP_08155216.1| WhiB family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|311890170|emb|CBH49488.1| WhiB-like transcriptional regulator [Rhodococcus equi 103S]
gi|325553503|gb|EGD23181.1| WhiB family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length=96
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 65/89 (74%), Positives = 77/89 (87%), Gaps = 0/89 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MP P LPGPNADIW+WQ++GLCRG++SS+FFHPDGERGRAR QRE RAKEMCR CPV+
Sbjct 1 MPVPNHLPGPNADIWDWQMRGLCRGVESSVFFHPDGERGRARAQRESRAKEMCRSCPVLA 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLK 89
CR+HAL V EPYG+WGG+SESER+ L +
Sbjct 61 QCRNHALTVCEPYGIWGGMSESERETLTR 89
>gi|54022857|ref|YP_117099.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54014365|dbj|BAD55735.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=118
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 61/86 (71%), Positives = 76/86 (89%), Gaps = 0/86 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MP P LPGPNAD+W+WQ++G CRG+DS++FFHPDGERGRART RE RAKE+CR CPV+
Sbjct 22 MPMPTHLPGPNADVWDWQMRGSCRGVDSAVFFHPDGERGRARTAREMRAKEICRTCPVLV 81
Query 61 ACRSHALEVGEPYGVWGGLSESERDL 86
CRSHAL+V EPYG+WGG+SE+ER++
Sbjct 82 QCRSHALKVSEPYGIWGGMSETEREM 107
>gi|227549901|ref|ZP_03979950.1| transcription factor WhiB [Corynebacterium lipophiloflavum DSM
44291]
gi|227077997|gb|EEI15960.1| transcription factor WhiB [Corynebacterium lipophiloflavum DSM
44291]
Length=105
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/102 (65%), Positives = 79/102 (78%), Gaps = 2/102 (1%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M QP+QLPGPNAD W+WQL G CRG S +F+HPDGERGRARTQRE RAK +C CPV+
Sbjct 1 MSQPQQLPGPNADFWDWQLHGACRGEASEVFYHPDGERGRARTQRENRAKAICYNCPVLS 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CR HAL+V EPYG+WGG+SESER +L+G G +RG + A
Sbjct 61 QCRDHALQVAEPYGIWGGMSESERQAILRG--GSSRGGLKVA 100
>gi|300779763|ref|ZP_07089619.1| WhiB family transcriptional regulator [Corynebacterium genitalium
ATCC 33030]
gi|300533873|gb|EFK54932.1| WhiB family transcriptional regulator [Corynebacterium genitalium
ATCC 33030]
Length=107
Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/102 (65%), Positives = 78/102 (77%), Gaps = 2/102 (1%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M P QLPGPNAD W+WQL G CRG S +F+HPDGERGRARTQRE RAK +C CPV+E
Sbjct 4 MSMPSQLPGPNADFWDWQLHGACRGEASDVFYHPDGERGRARTQRENRAKAICLGCPVLE 63
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
CR+HAL V EPYG+WGG+SESER L+G R+RG ++ A
Sbjct 64 QCRAHALAVAEPYGIWGGMSESERHATLRGN--RSRGGKKVA 103
>gi|227487034|ref|ZP_03917350.1| WhiB family transcriptional regulator [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227093108|gb|EEI28420.1| WhiB family transcriptional regulator [Corynebacterium glucuronolyticum
ATCC 51867]
Length=100
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/88 (70%), Positives = 75/88 (86%), Gaps = 0/88 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP++LPGP D+W+WQ+ G CRG DSS FFHP+GERGRART+RE RAK +C CPV+E
Sbjct 1 MPQPKKLPGPQLDVWDWQVHGSCRGKDSSFFFHPEGERGRARTRRELRAKAICNVCPVLE 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLL 88
CR+HAL+V EPYG+WGGLSE+ERD +L
Sbjct 61 QCRNHALKVAEPYGIWGGLSEAERDSIL 88
>gi|213964773|ref|ZP_03392972.1| transcription factor WhiB [Corynebacterium amycolatum SK46]
gi|213952309|gb|EEB63692.1| transcription factor WhiB [Corynebacterium amycolatum SK46]
Length=114
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/90 (69%), Positives = 74/90 (83%), Gaps = 0/90 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M + LPGPNAD+W+WQL G CRG DS+ FFHP+GERGRAR+ RE RAK +CR CPV+
Sbjct 8 MTYIDHLPGPNADLWDWQLHGSCRGQDSATFFHPEGERGRARSLREARAKAICRSCPVLM 67
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKG 90
CRSHAL+VGEPYGVWGGLSESER+ +L+
Sbjct 68 QCRSHALKVGEPYGVWGGLSESERNEILRA 97
>gi|296394430|ref|YP_003659314.1| transcription factor WhiB [Segniliparus rotundus DSM 44985]
gi|296181577|gb|ADG98483.1| transcription factor WhiB [Segniliparus rotundus DSM 44985]
Length=96
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/84 (71%), Positives = 74/84 (89%), Gaps = 0/84 (0%)
Query 6 QLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIEACRSH 65
LPGPNAD+W+WQ++G+CRGMDSS+FFHP+GERGRAR QRE +AKE CR+CPV+ CR H
Sbjct 5 HLPGPNADLWDWQIKGVCRGMDSSIFFHPEGERGRARRQRENKAKEFCRQCPVVMQCREH 64
Query 66 ALEVGEPYGVWGGLSESERDLLLK 89
A+ VGEPYG+WGGLSESER + ++
Sbjct 65 AIRVGEPYGIWGGLSESERIVAME 88
>gi|262201668|ref|YP_003272876.1| transcription factor WhiB [Gordonia bronchialis DSM 43247]
gi|262085015|gb|ACY20983.1| transcription factor WhiB [Gordonia bronchialis DSM 43247]
Length=98
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/94 (77%), Positives = 80/94 (86%), Gaps = 0/94 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP LPGPNADIW WQ+ GLCRG+DSSMFFHPDGERGRAR QRE+RAKEMC +CPVI
Sbjct 1 MPQPNHLPGPNADIWEWQMHGLCRGVDSSMFFHPDGERGRARAQRERRAKEMCHQCPVIA 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGR 94
CR HAL V EPYG+WGGLSESER +L+K +GR
Sbjct 61 QCREHALAVAEPYGIWGGLSESERSILMKRGVGR 94
>gi|343928274|ref|ZP_08767727.1| putative WhiB family regulatory protein [Gordonia alkanivorans
NBRC 16433]
gi|343761804|dbj|GAA14653.1| putative WhiB family regulatory protein [Gordonia alkanivorans
NBRC 16433]
Length=98
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/94 (76%), Positives = 81/94 (87%), Gaps = 0/94 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP LPGPNADIW+WQ+ GLCRG+DSSMFFHPDGERGRAR QRE+RAKE+C +CPVI
Sbjct 1 MPQPNHLPGPNADIWDWQMSGLCRGVDSSMFFHPDGERGRARAQRERRAKELCHQCPVIA 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGR 94
CR HAL V EPYG+WGGLSESER +L+K +GR
Sbjct 61 QCREHALAVAEPYGIWGGLSESERSMLMKRGVGR 94
>gi|19551833|ref|NP_599835.1| hypothetical protein NCgl0574 [Corynebacterium glutamicum ATCC
13032]
gi|62389490|ref|YP_224892.1| hypothetical protein cg0695 [Corynebacterium glutamicum ATCC
13032]
gi|145294769|ref|YP_001137590.1| hypothetical protein cgR_0717 [Corynebacterium glutamicum R]
gi|21323364|dbj|BAB97992.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
gi|41324824|emb|CAF19306.1| Transcription factor WhiB [Corynebacterium glutamicum ATCC 13032]
gi|140844689|dbj|BAF53688.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045963|gb|EGV41632.1| hypothetical protein CgS9114_02448 [Corynebacterium glutamicum
S9114]
Length=99
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 61/91 (68%), Positives = 71/91 (79%), Gaps = 0/91 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M P QLPGPNAD W+WQL G CRG S +F+HPDGERGRAR +RE RAK +C CPV+E
Sbjct 1 MTLPHQLPGPNADFWDWQLHGTCRGETSDVFYHPDGERGRARQRRELRAKAICAACPVLE 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGT 91
+CR HAL V EPYGVWGGLSESER ++L+
Sbjct 61 SCRKHALAVAEPYGVWGGLSESERLVILRNN 91
>gi|227832305|ref|YP_002834012.1| WhiB transcriptional regulator [Corynebacterium aurimucosum ATCC
700975]
gi|262183838|ref|ZP_06043259.1| WhiB transcriptional regulator [Corynebacterium aurimucosum ATCC
700975]
gi|227453321|gb|ACP32074.1| WhiB transcriptional regulator [Corynebacterium aurimucosum ATCC
700975]
Length=99
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 61/89 (69%), Positives = 69/89 (78%), Gaps = 0/89 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M QP LPGPN D W+WQL G CRG +S +F+HPDGERGRAR QRE RAK +C CPVIE
Sbjct 1 MSQPFLLPGPNTDFWDWQLHGACRGENSDVFYHPDGERGRARAQRENRAKAICHTCPVIE 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLK 89
CR HAL GEPYGVWGG+SESER + L+
Sbjct 61 MCREHALASGEPYGVWGGMSESERVVALR 89
>gi|340795246|ref|YP_004760709.1| putative WhiB transcription regulator [Corynebacterium variabile
DSM 44702]
gi|340535156|gb|AEK37636.1| putative WhiB transcription regulator [Corynebacterium variabile
DSM 44702]
Length=115
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/83 (72%), Positives = 67/83 (81%), Gaps = 0/83 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP QLPGP +D W WQL+G CRG S++FFHPDGERGRART RE RAK +CR CPV+
Sbjct 1 MPQPSQLPGPTSDFWEWQLRGACRGAASAVFFHPDGERGRARTMREHRAKAICRECPVLV 60
Query 61 ACRSHALEVGEPYGVWGGLSESE 83
CR HAL VGE YG+WGG+SESE
Sbjct 61 QCRDHALAVGEVYGIWGGMSESE 83
>gi|259506705|ref|ZP_05749607.1| transcription regulator WhiB3 [Corynebacterium efficiens YS-314]
gi|259165688|gb|EEW50242.1| transcription regulator WhiB3 [Corynebacterium efficiens YS-314]
Length=128
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/89 (69%), Positives = 70/89 (79%), Gaps = 0/89 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M P QLPGPNAD W+WQLQG CRG S +F+HPDGERGRAR +RE RAK +C CPV++
Sbjct 30 MTLPHQLPGPNADFWDWQLQGSCRGEASDVFYHPDGERGRARQRRELRAKAICASCPVLQ 89
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLK 89
CR HAL V EPYGVWGGLSESER +L+
Sbjct 90 ECRRHALAVAEPYGVWGGLSESERLTILR 118
>gi|25027160|ref|NP_737214.1| putative transcription regulator WhiB3 [Corynebacterium efficiens
YS-314]
gi|23492441|dbj|BAC17414.1| putative transcription regulator WhiB3 [Corynebacterium efficiens
YS-314]
Length=196
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/89 (69%), Positives = 70/89 (79%), Gaps = 0/89 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M P QLPGPNAD W+WQLQG CRG S +F+HPDGERGRAR +RE RAK +C CPV++
Sbjct 98 MTLPHQLPGPNADFWDWQLQGSCRGEASDVFYHPDGERGRARQRRELRAKAICASCPVLQ 157
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLK 89
CR HAL V EPYGVWGGLSESER +L+
Sbjct 158 ECRRHALAVAEPYGVWGGLSESERLTILR 186
>gi|255323978|ref|ZP_05365104.1| transcription factor WhiB [Corynebacterium tuberculostearicum
SK141]
gi|255299158|gb|EET78449.1| transcription factor WhiB [Corynebacterium tuberculostearicum
SK141]
Length=100
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/84 (71%), Positives = 68/84 (81%), Gaps = 0/84 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M QP LPGP AD+W+WQLQG CRG +S +F+HPDGERGRAR QRE RAK +C CPVI+
Sbjct 1 MSQPHLLPGPTADLWDWQLQGACRGENSDVFYHPDGERGRARAQRENRAKAICNSCPVID 60
Query 61 ACRSHALEVGEPYGVWGGLSESER 84
CR HAL+ EPYGVWGG+SESER
Sbjct 61 LCREHALQSAEPYGVWGGMSESER 84
>gi|227502736|ref|ZP_03932785.1| WhiB family transcriptional regulator [Corynebacterium accolens
ATCC 49725]
gi|306835317|ref|ZP_07468343.1| WhiB family transcriptional regulator [Corynebacterium accolens
ATCC 49726]
gi|227076466|gb|EEI14429.1| WhiB family transcriptional regulator [Corynebacterium accolens
ATCC 49725]
gi|304568796|gb|EFM44335.1| WhiB family transcriptional regulator [Corynebacterium accolens
ATCC 49726]
Length=98
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/89 (66%), Positives = 68/89 (77%), Gaps = 0/89 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M Q + GP AD+W+WQLQG CRG +S +F+HPDGERGRAR QRE RAK +C CPVIE
Sbjct 1 MSQSKSFLGPTADVWDWQLQGACRGENSDVFYHPDGERGRARAQRENRAKAICNSCPVIE 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLK 89
CR HAL EPYGVWGG+SESER + L+
Sbjct 61 LCREHALRSAEPYGVWGGMSESERVVALR 89
>gi|326381879|ref|ZP_08203572.1| WhiB family regulatory protein [Gordonia neofelifaecis NRRL B-59395]
gi|326199305|gb|EGD56486.1| WhiB family regulatory protein [Gordonia neofelifaecis NRRL B-59395]
Length=97
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/98 (62%), Positives = 80/98 (82%), Gaps = 6/98 (6%)
Query 5 EQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIEACRS 64
++LPGPN+D W+WQ++G CRG++S++FFHP+GERG+AR QRE+RAK++C CPV+ CRS
Sbjct 6 DRLPGPNSDFWDWQMEGRCRGLESAVFFHPEGERGQARMQRERRAKQVCAECPVLMQCRS 65
Query 65 HALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
HAL V EPYG+WGGL+ESER+L+ R RG RR A
Sbjct 66 HALAVDEPYGIWGGLTESERNLM------RRRGSRRLA 97
>gi|324998046|ref|ZP_08119158.1| Transcription factor WhiB [Pseudonocardia sp. P1]
Length=115
Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/90 (64%), Positives = 71/90 (79%), Gaps = 0/90 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M +LPGP ADI++WQ +G CRGMDS+ FFHP+GERG AR +RE RAK++C CPV+
Sbjct 4 MADIRRLPGPVADIYDWQREGACRGMDSAFFFHPEGERGPARARRENRAKQVCNDCPVLA 63
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKG 90
CR HAL V EPYG+WGGLSESERD +++G
Sbjct 64 QCREHALNVHEPYGIWGGLSESERDAIIRG 93
>gi|296138631|ref|YP_003645874.1| transcription factor WhiB [Tsukamurella paurometabola DSM 20162]
gi|296026765|gb|ADG77535.1| transcription factor WhiB [Tsukamurella paurometabola DSM 20162]
Length=98
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/89 (75%), Positives = 78/89 (88%), Gaps = 0/89 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MPQP +LPGPNAD W+WQ++G+CRG+DSS+FFHPDGERGRAR QRE+RAKE+C CPV+
Sbjct 1 MPQPNELPGPNADFWDWQMRGVCRGVDSSVFFHPDGERGRARAQRERRAKELCHSCPVLV 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLK 89
CRSHAL V EPYG+WGGLSESER L+K
Sbjct 61 QCRSHALAVAEPYGIWGGLSESERATLMK 89
>gi|256390214|ref|YP_003111778.1| transcription factor WhiB [Catenulispora acidiphila DSM 44928]
gi|256356440|gb|ACU69937.1| transcription factor WhiB [Catenulispora acidiphila DSM 44928]
Length=160
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/85 (66%), Positives = 67/85 (79%), Gaps = 0/85 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M +LPGPNAD W+WQL+G CRG DS +FFHP+GERG+ART RE+ AKE+C CPV +
Sbjct 1 MADVSRLPGPNADFWDWQLRGSCRGTDSDLFFHPEGERGQARTSREEAAKEVCLHCPVCK 60
Query 61 ACRSHALEVGEPYGVWGGLSESERD 85
CR HAL V EPYGVWGG++E ERD
Sbjct 61 PCREHALRVHEPYGVWGGMTEEERD 85
>gi|329938173|ref|ZP_08287624.1| Sporulation regulatory protein WhiD [Streptomyces griseoaurantiacus
M045]
gi|329302662|gb|EGG46552.1| Sporulation regulatory protein WhiD [Streptomyces griseoaurantiacus
M045]
Length=166
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/96 (63%), Positives = 71/96 (74%), Gaps = 4/96 (4%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M +LPGPNAD+W+WQL CRG+DSS+FFHP+GERG AR+ RE AKE+C RCPV
Sbjct 36 MADFSRLPGPNADLWDWQLLAACRGVDSSLFFHPEGERGAARSARENSAKEVCMRCPVRA 95
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTR 96
C +HAL V EPYGVWGGL+E ER+ L MGR R
Sbjct 96 ECAAHALAVREPYGVWGGLTEDEREEL----MGRAR 127
>gi|29831540|ref|NP_826174.1| WhiB-family transcriptional regulator [Streptomyces avermitilis
MA-4680]
gi|29608656|dbj|BAC72709.1| putative WhiB-family transcriptional regulator; putative role
in cell cycle control [Streptomyces avermitilis MA-4680]
Length=109
Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/97 (62%), Positives = 71/97 (74%), Gaps = 4/97 (4%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M +LPGPNAD+W+WQL CRG+DSS+FFHP+GERG AR+ RE AKE+C RCPV
Sbjct 1 MADFSRLPGPNADLWDWQLLAACRGVDSSLFFHPEGERGAARSARENSAKEVCMRCPVRA 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRG 97
C +HAL V EPYGVWGGL+E ER+ L MGR R
Sbjct 61 QCAAHALAVREPYGVWGGLTEDEREEL----MGRARN 93
>gi|302553612|ref|ZP_07305954.1| WhiB-family transcriptional regulator [Streptomyces viridochromogenes
DSM 40736]
gi|302471230|gb|EFL34323.1| WhiB-family transcriptional regulator [Streptomyces viridochromogenes
DSM 40736]
Length=109
Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/96 (63%), Positives = 71/96 (74%), Gaps = 4/96 (4%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M +LPGPNAD+W+WQL CRG+DSS+FFHP+GERG AR+ RE AKE+C RCPV
Sbjct 1 MADFSRLPGPNADLWDWQLLAACRGVDSSLFFHPEGERGAARSARENSAKEVCMRCPVRA 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTR 96
C +HAL V EPYGVWGGL+E ER+ L MGR R
Sbjct 61 ECAAHALAVREPYGVWGGLTEDEREEL----MGRAR 92
>gi|294630966|ref|ZP_06709526.1| WhiB protein [Streptomyces sp. e14]
gi|292834299|gb|EFF92648.1| WhiB protein [Streptomyces sp. e14]
Length=109
Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/102 (61%), Positives = 73/102 (72%), Gaps = 4/102 (3%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M +LPGPNAD+W+WQL CRG+DSS+FFHP+GERG AR+ RE AKE+C RCPV
Sbjct 1 MADFSRLPGPNADLWDWQLLAACRGVDSSLFFHPEGERGAARSARENSAKEVCMRCPVRA 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA 102
C +HAL V EPYGVWGGL+E ER+ L MGR R TA
Sbjct 61 ECAAHALAVREPYGVWGGLTEDEREEL----MGRARNRLVTA 98
>gi|311896509|dbj|BAJ28917.1| putative WhiB family transcriptional regulator [Kitasatospora
setae KM-6054]
Length=108
Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/97 (62%), Positives = 72/97 (75%), Gaps = 4/97 (4%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M +LPGPNAD+W+WQL CRG+DSS+FFHP+GERG ART RE AKE+C RCPV
Sbjct 1 MADFSRLPGPNADLWDWQLSAACRGVDSSLFFHPEGERGAARTSRETSAKEVCMRCPVRA 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRG 97
C +HAL V EPYGVWGG++E ER+ LL GR+R
Sbjct 61 QCATHALAVREPYGVWGGMTEDEREELL----GRSRN 93
>gi|302558924|ref|ZP_07311266.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
gi|302476542|gb|EFL39635.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
Length=109
Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/96 (63%), Positives = 71/96 (74%), Gaps = 4/96 (4%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M +LPGPNAD+W+WQL CRG+DSS+FFHP+GERG AR+ RE AKE+C RCPV
Sbjct 1 MADFSRLPGPNADLWDWQLLAACRGVDSSLFFHPEGERGAARSARENSAKEVCMRCPVRA 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTR 96
C +HAL V EPYGVWGGL+E ER+ L MGR R
Sbjct 61 ECAAHALAVREPYGVWGGLTEDEREEL----MGRAR 92
>gi|328884499|emb|CCA57738.1| Sporulation regulatory protein WhiD [Streptomyces venezuelae
ATCC 10712]
Length=130
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/96 (63%), Positives = 71/96 (74%), Gaps = 4/96 (4%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
M +LPGPNAD+W+WQL CRG+DSS+FFHP+GERG AR+ RE AKE+C RCPV
Sbjct 1 MADFSRLPGPNADLWDWQLLAACRGVDSSLFFHPEGERGAARSARENSAKEVCMRCPVRA 60
Query 61 ACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTR 96
C +HAL V EPYGVWGGL+E ER+ L MGR R
Sbjct 61 ECAAHALAVREPYGVWGGLTEDEREEL----MGRAR 92
>gi|111021799|ref|YP_704771.1| WhiB family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110821329|gb|ABG96613.1| possible transcriptional regulator, WhiB family protein [Rhodococcus
jostii RHA1]
Length=97
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 53/84 (64%), Positives = 67/84 (80%), Gaps = 0/84 (0%)
Query 1 MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIE 60
MP +LP PN + W+WQ+ LCRG++SS+FFHPDGERG AR+ RE+RAK +CRRCPV+
Sbjct 1 MPSSTRLPSPNTESWDWQIHALCRGVESSVFFHPDGERGNARSNRERRAKAICRRCPVLV 60
Query 61 ACRSHALEVGEPYGVWGGLSESER 84
CR HAL V EP+G+WGGL+ SER
Sbjct 61 ECRDHALSVTEPFGIWGGLTASER 84
Lambda K H
0.321 0.137 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128294982110
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40