BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3422c
Length=168
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610558|ref|NP_217939.1| hypothetical protein Rv3422c [Mycob... 330 6e-89
gi|340628400|ref|YP_004746852.1| hypothetical protein MCAN_34461... 327 3e-88
gi|308232459|ref|ZP_07664092.1| hypothetical protein TMAG_03370 ... 270 5e-71
gi|289763605|ref|ZP_06522983.1| conserved hypothetical protein [... 253 7e-66
gi|296168769|ref|ZP_06850458.1| possible bifunctional ATP-bindin... 241 4e-62
gi|240167813|ref|ZP_04746472.1| hypothetical protein MkanA1_0075... 228 2e-58
gi|333991881|ref|YP_004524495.1| hypothetical protein JDM601_324... 223 6e-57
gi|118616652|ref|YP_904984.1| hypothetical protein MUL_0881 [Myc... 220 6e-56
gi|183981141|ref|YP_001849432.1| hypothetical protein MMAR_1121 ... 217 5e-55
gi|342861897|ref|ZP_08718542.1| hypothetical protein MCOL_23525 ... 208 2e-52
gi|254823096|ref|ZP_05228097.1| hypothetical protein MintA_24420... 205 2e-51
gi|15827106|ref|NP_301369.1| hypothetical protein ML0377 [Mycoba... 204 3e-51
gi|41410358|ref|NP_963194.1| hypothetical protein MAP4260 [Mycob... 203 9e-51
gi|254776800|ref|ZP_05218316.1| hypothetical protein MaviaA2_193... 201 4e-50
gi|169630816|ref|YP_001704465.1| hypothetical protein MAB_3737c ... 199 2e-49
gi|120402495|ref|YP_952324.1| hypothetical protein Mvan_1486 [My... 193 6e-48
gi|118473830|ref|YP_885956.1| hypothetical protein MSMEG_1577 [M... 179 9e-44
gi|108798120|ref|YP_638317.1| hypothetical protein Mmcs_1148 [My... 174 4e-42
gi|145225508|ref|YP_001136186.1| hypothetical protein Mflv_4932 ... 172 1e-41
gi|227832291|ref|YP_002833998.1| hypothetical protein cauri_0463... 157 4e-37
gi|255323994|ref|ZP_05365120.1| conserved hypothetical protein [... 157 6e-37
gi|311740004|ref|ZP_07713838.1| possible bifunctional ATP-bindin... 156 8e-37
gi|227505269|ref|ZP_03935318.1| possible bifunctional ATP-bindin... 152 2e-35
gi|306835299|ref|ZP_07468327.1| possible bifunctional ATP-bindin... 151 4e-35
gi|227502722|ref|ZP_03932771.1| possible bifunctional ATP-bindin... 150 6e-35
gi|300779771|ref|ZP_07089627.1| possible bifunctional ATP-bindin... 145 2e-33
gi|319949828|ref|ZP_08023846.1| hypothetical protein ES5_10107 [... 139 2e-31
gi|336326374|ref|YP_004606340.1| Alanine racemase [Corynebacteri... 136 1e-30
gi|337290079|ref|YP_004629100.1| hypothetical protein CULC22_004... 131 4e-29
gi|38233178|ref|NP_938945.1| hypothetical protein DIP0569 [Coryn... 130 6e-29
gi|227549894|ref|ZP_03979943.1| possible bifunctional ATP-bindin... 130 7e-29
gi|333921695|ref|YP_004495276.1| hypothetical protein AS9A_4042 ... 129 1e-28
gi|296268599|ref|YP_003651231.1| hypothetical protein Tbis_0611 ... 129 2e-28
gi|257054531|ref|YP_003132363.1| hypothetical protein Svir_04610... 127 4e-28
gi|111023145|ref|YP_706117.1| hypothetical protein RHA1_ro06182 ... 127 4e-28
gi|302205564|gb|ADL09906.1| UPF0079 ATP-binding protein [Coryneb... 126 9e-28
gi|226305405|ref|YP_002765363.1| ATPase [Rhodococcus erythropoli... 126 1e-27
gi|152964698|ref|YP_001360482.1| hypothetical protein Krad_0729 ... 126 1e-27
gi|229489316|ref|ZP_04383179.1| conserved hypothetical protein [... 125 2e-27
gi|296119281|ref|ZP_06837849.1| putative ATPase or kinase [Coryn... 125 2e-27
gi|300857829|ref|YP_003782812.1| hypothetical protein cpfrc_0041... 124 3e-27
gi|262201660|ref|YP_003272868.1| hypothetical protein Gbro_1713 ... 124 3e-27
gi|213964899|ref|ZP_03393098.1| alanine racemase [Corynebacteriu... 124 4e-27
gi|311744758|ref|ZP_07718554.1| conserved hypothetical protein [... 124 5e-27
gi|226365651|ref|YP_002783434.1| ATPase [Rhodococcus opacus B4] ... 124 5e-27
gi|54022848|ref|YP_117090.1| hypothetical protein nfa8810 [Nocar... 124 7e-27
gi|238061047|ref|ZP_04605756.1| hypothetical protein MCAG_02013 ... 123 1e-26
gi|315501354|ref|YP_004080241.1| hypothetical protein ML5_0540 [... 120 5e-26
gi|343928268|ref|ZP_08767721.1| putative ATPase [Gordonia alkani... 120 5e-26
gi|256824608|ref|YP_003148568.1| hypothetical protein Ksed_07470... 120 6e-26
>gi|15610558|ref|NP_217939.1| hypothetical protein Rv3422c [Mycobacterium tuberculosis H37Rv]
gi|15843018|ref|NP_338055.1| hypothetical protein MT3531 [Mycobacterium tuberculosis CDC1551]
gi|31794603|ref|NP_857096.1| hypothetical protein Mb3456c [Mycobacterium bovis AF2122/97]
70 more sequence titles
Length=168
Score = 330 bits (845), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 167/168 (99%), Positives = 168/168 (100%), Gaps = 0/168 (0%)
Query 1 LSREGIRRRPKARAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVL 60
+SREGIRRRPKARAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVL
Sbjct 1 MSREGIRRRPKARAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVL 60
Query 61 AKGIAMAMDVEGPITSPTFVLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDL 120
AKGIAMAMDVEGPITSPTFVLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDL
Sbjct 61 AKGIAMAMDVEGPITSPTFVLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDL 120
Query 121 DTDLEDAVVVVEWGEGLAERLSQRHLDVRLERVSHSDTRIATWSWGRS 168
DTDLEDAVVVVEWGEGLAERLSQRHLDVRLERVSHSDTRIATWSWGRS
Sbjct 121 DTDLEDAVVVVEWGEGLAERLSQRHLDVRLERVSHSDTRIATWSWGRS 168
>gi|340628400|ref|YP_004746852.1| hypothetical protein MCAN_34461 [Mycobacterium canettii CIPT
140010059]
gi|340006590|emb|CCC45777.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=168
Score = 327 bits (839), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 166/168 (99%), Positives = 167/168 (99%), Gaps = 0/168 (0%)
Query 1 LSREGIRRRPKARAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVL 60
+SREGIRRRPKARAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVL
Sbjct 1 MSREGIRRRPKARAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVL 60
Query 61 AKGIAMAMDVEGPITSPTFVLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDL 120
AKGIAMAMDVEGPITSPTFVLARMHRPRRPG PAMVHVDVYRLLDHNSADLLSELDSLDL
Sbjct 61 AKGIAMAMDVEGPITSPTFVLARMHRPRRPGMPAMVHVDVYRLLDHNSADLLSELDSLDL 120
Query 121 DTDLEDAVVVVEWGEGLAERLSQRHLDVRLERVSHSDTRIATWSWGRS 168
DTDLEDAVVVVEWGEGLAERLSQRHLDVRLERVSHSDTRIATWSWGRS
Sbjct 121 DTDLEDAVVVVEWGEGLAERLSQRHLDVRLERVSHSDTRIATWSWGRS 168
>gi|308232459|ref|ZP_07664092.1| hypothetical protein TMAG_03370 [Mycobacterium tuberculosis SUMu001]
gi|308372541|ref|ZP_07667404.1| hypothetical protein TMDG_03169 [Mycobacterium tuberculosis SUMu004]
gi|308374872|ref|ZP_07667887.1| hypothetical protein TMFG_02990 [Mycobacterium tuberculosis SUMu006]
gi|308380695|ref|ZP_07669257.1| hypothetical protein TMKG_03768 [Mycobacterium tuberculosis SUMu011]
gi|308213937|gb|EFO73336.1| hypothetical protein TMAG_03370 [Mycobacterium tuberculosis SUMu001]
gi|308332925|gb|EFP21776.1| hypothetical protein TMDG_03169 [Mycobacterium tuberculosis SUMu004]
gi|308340411|gb|EFP29262.1| hypothetical protein TMFG_02990 [Mycobacterium tuberculosis SUMu006]
gi|308360757|gb|EFP49608.1| hypothetical protein TMKG_03768 [Mycobacterium tuberculosis SUMu011]
Length=136
Score = 270 bits (690), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 135/136 (99%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Query 33 LGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRPRRPGT 92
+GSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRPRRPGT
Sbjct 1 MGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRPRRPGT 60
Query 93 PAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHLDVRLER 152
PAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHLDVRLER
Sbjct 61 PAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHLDVRLER 120
Query 153 VSHSDTRIATWSWGRS 168
VSHSDTRIATWSWGRS
Sbjct 121 VSHSDTRIATWSWGRS 136
>gi|289763605|ref|ZP_06522983.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289711111|gb|EFD75127.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=168
Score = 253 bits (646), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 149/168 (89%), Positives = 151/168 (90%), Gaps = 0/168 (0%)
Query 1 LSREGIRRRPKARAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVL 60
+SREGIRRRPKARAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVL
Sbjct 1 MSREGIRRRPKARAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVL 60
Query 61 AKGIAMAMDVEGPITSPTFVLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDL 120
AKGIAMAMDVEGPITSPTFVLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDL
Sbjct 61 AKGIAMAMDVEGPITSPTFVLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDL 120
Query 121 DTDLEDAVVVVEWGEGLAERLSQRHLDVRLERVSHSDTRIATWSWGRS 168
DTDLEDAVVVVEW +RVSHSDTRIATWSWGRS
Sbjct 121 DTDLEDAVVVVEWARAWPSGSRSATSTSAWKRVSHSDTRIATWSWGRS 168
>gi|296168769|ref|ZP_06850458.1| possible bifunctional ATP-binding protein/phosphotransferase
[Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896552|gb|EFG76196.1| possible bifunctional ATP-binding protein/phosphotransferase
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length=171
Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 120/149 (81%), Positives = 136/149 (92%), Gaps = 0/149 (0%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
GTATL RVEDT+ LGSRLGEQL AGDVVVL+GPLGAGKTVLAKGIA AMDV+GP+TSP++
Sbjct 23 GTATLERVEDTVALGSRLGEQLRAGDVVVLTGPLGAGKTVLAKGIAAAMDVDGPVTSPSY 82
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAE 139
VLAR+H PRRPG PAM+HVD+YRLLD + ADLL ELDSLDLDT+L+DAVVVVEWGEGL E
Sbjct 83 VLARVHPPRRPGAPAMIHVDMYRLLDTDGADLLGELDSLDLDTELDDAVVVVEWGEGLVE 142
Query 140 RLSQRHLDVRLERVSHSDTRIATWSWGRS 168
RL++RHLDVRLER+S SD RIA+W WGRS
Sbjct 143 RLAERHLDVRLERLSGSDVRIASWQWGRS 171
>gi|240167813|ref|ZP_04746472.1| hypothetical protein MkanA1_00755 [Mycobacterium kansasii ATCC
12478]
Length=151
Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/142 (81%), Positives = 125/142 (89%), Gaps = 0/142 (0%)
Query 24 LPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLAR 83
L RVEDT+ LG+RLG+QL AGDVVVLSGPLGAGKTVLAKGIA MDVEGP+TSPT+VLAR
Sbjct 7 LERVEDTVALGARLGQQLRAGDVVVLSGPLGAGKTVLAKGIAATMDVEGPVTSPTYVLAR 66
Query 84 MHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQ 143
+H RRPG PAM+HVD+YRLLD LL ELDSLDLD +L+DAVVVVEWGEGLAERLSQ
Sbjct 67 VHPARRPGRPAMIHVDLYRLLDRPGTALLGELDSLDLDAELDDAVVVVEWGEGLAERLSQ 126
Query 144 RHLDVRLERVSHSDTRIATWSW 165
RHLDVRLERVSHSD RIATW W
Sbjct 127 RHLDVRLERVSHSDVRIATWQW 148
>gi|333991881|ref|YP_004524495.1| hypothetical protein JDM601_3241 [Mycobacterium sp. JDM601]
gi|333487849|gb|AEF37241.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=151
Score = 223 bits (569), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 113/145 (78%), Positives = 126/145 (87%), Gaps = 0/145 (0%)
Query 21 TATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFV 80
T L EDT+ LG+RLG QL AGDVVVLSGPLGAGKTVLAKGIA AMDVEGP+TSPT+V
Sbjct 4 TQHLATAEDTVALGTRLGGQLRAGDVVVLSGPLGAGKTVLAKGIAAAMDVEGPVTSPTYV 63
Query 81 LARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAER 140
LAR HR RRPG PAM+HVD+YRLLD + DLL+ELDSLDLDT+L+DAVVVVEWGEGLAER
Sbjct 64 LAREHRARRPGDPAMIHVDLYRLLDESGLDLLAELDSLDLDTELDDAVVVVEWGEGLAER 123
Query 141 LSQRHLDVRLERVSHSDTRIATWSW 165
LS+RHLDVRL+R + SDTR ATW W
Sbjct 124 LSERHLDVRLDRAAESDTRTATWRW 148
>gi|118616652|ref|YP_904984.1| hypothetical protein MUL_0881 [Mycobacterium ulcerans Agy99]
gi|118568762|gb|ABL03513.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=156
Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/146 (85%), Positives = 134/146 (92%), Gaps = 0/146 (0%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
GTATL RV DT+ LG+RLGEQL AGDVVVLSGPLGAGKTVLAKGIA AMDV+GP+TSPT+
Sbjct 8 GTATLERVADTVALGTRLGEQLRAGDVVVLSGPLGAGKTVLAKGIAAAMDVDGPVTSPTY 67
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAE 139
VLAR+H PR PG PAM+HVDVYRLLDH SADLL ELDSLDLDTDL D+VVVVEWGEGLAE
Sbjct 68 VLARVHPPRGPGRPAMIHVDVYRLLDHGSADLLGELDSLDLDTDLTDSVVVVEWGEGLAE 127
Query 140 RLSQRHLDVRLERVSHSDTRIATWSW 165
RLS+RHLD+RLERVSHSD RIATW+W
Sbjct 128 RLSERHLDIRLERVSHSDVRIATWAW 153
>gi|183981141|ref|YP_001849432.1| hypothetical protein MMAR_1121 [Mycobacterium marinum M]
gi|183174467|gb|ACC39577.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=156
Score = 217 bits (553), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/146 (84%), Positives = 133/146 (92%), Gaps = 0/146 (0%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
GTATL RV DT+ LG+RLGEQL AGDVVVLSGPLGAGKTVLAKGIA AMDV+GP+TSPT+
Sbjct 8 GTATLERVADTVALGTRLGEQLRAGDVVVLSGPLGAGKTVLAKGIAAAMDVDGPVTSPTY 67
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAE 139
VLAR+H R PG PAM+HVDVYRLLDH SADLL ELDSLDLDTDL D+VVVVEWGEGLAE
Sbjct 68 VLARVHPARGPGRPAMIHVDVYRLLDHGSADLLGELDSLDLDTDLTDSVVVVEWGEGLAE 127
Query 140 RLSQRHLDVRLERVSHSDTRIATWSW 165
RLS+RHLD+RLERVSHSD RIATW+W
Sbjct 128 RLSERHLDIRLERVSHSDVRIATWAW 153
>gi|342861897|ref|ZP_08718542.1| hypothetical protein MCOL_23525 [Mycobacterium colombiense CECT
3035]
gi|342130714|gb|EGT84018.1| hypothetical protein MCOL_23525 [Mycobacterium colombiense CECT
3035]
Length=168
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/150 (78%), Positives = 132/150 (88%), Gaps = 3/150 (2%)
Query 19 GGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPT 78
GGTATL RVEDT+ LGSRLG L AGDVVVLSGPLGAGKTVLAKGIA AMDV+GP+TSP+
Sbjct 6 GGTATLERVEDTMALGSRLGRHLRAGDVVVLSGPLGAGKTVLAKGIAEAMDVDGPVTSPS 65
Query 79 FVLARMHRPRRPGTPAMVHVDVYRLLDH---NSADLLSELDSLDLDTDLEDAVVVVEWGE 135
+VLAR+H PRRPG P M+HVD+YRLLDH ADLL ELDSLDLD+DL+DAVVVVEWGE
Sbjct 66 YVLARVHPPRRPGAPTMIHVDMYRLLDHTGNQGADLLGELDSLDLDSDLDDAVVVVEWGE 125
Query 136 GLAERLSQRHLDVRLERVSHSDTRIATWSW 165
GL ERL++RHLD+RLERV++SD RIATW W
Sbjct 126 GLVERLAERHLDIRLERVTNSDVRIATWRW 155
>gi|254823096|ref|ZP_05228097.1| hypothetical protein MintA_24420 [Mycobacterium intracellulare
ATCC 13950]
Length=161
Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/151 (77%), Positives = 131/151 (87%), Gaps = 3/151 (1%)
Query 18 GGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSP 77
G GTAT RVEDT+ LG+RLGEQL AGDVVVLSGPLGAGKTVLAKGIA AMDV+GP+TSP
Sbjct 4 GEGTATCERVEDTIALGTRLGEQLRAGDVVVLSGPLGAGKTVLAKGIAAAMDVDGPVTSP 63
Query 78 TFVLARMHRPRRPGTPAMVHVDVYRLLDH---NSADLLSELDSLDLDTDLEDAVVVVEWG 134
++VLAR+H PRR PAM+HVD+YRLLDH ADLL ELDSLDLD+DL+DAVVVVEWG
Sbjct 64 SYVLARVHPPRREAAPAMIHVDMYRLLDHTDNQGADLLGELDSLDLDSDLDDAVVVVEWG 123
Query 135 EGLAERLSQRHLDVRLERVSHSDTRIATWSW 165
EGL ERL++RHLD+RLER+S SD RIATW W
Sbjct 124 EGLVERLAERHLDIRLERLSGSDVRIATWQW 154
>gi|15827106|ref|NP_301369.1| hypothetical protein ML0377 [Mycobacterium leprae TN]
gi|221229584|ref|YP_002503000.1| hypothetical protein MLBr_00377 [Mycobacterium leprae Br4923]
gi|2496468|sp|Q49864.1|Y377_MYCLE RecName: Full=UPF0079 ATP-binding protein ML0377
gi|467118|gb|AAA17300.1| u229f [Mycobacterium leprae]
gi|13092654|emb|CAC29885.1| ML0377 [Mycobacterium leprae]
gi|219932691|emb|CAR70470.1| unnamed protein product [Mycobacterium leprae Br4923]
Length=161
Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/146 (78%), Positives = 126/146 (87%), Gaps = 0/146 (0%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
G RVEDT+ LGSRLGEQL AGDVVVLSGPLGAGKTVLAKGIA+AMDV+GP+ SPT+
Sbjct 9 GAVICERVEDTVALGSRLGEQLRAGDVVVLSGPLGAGKTVLAKGIAVAMDVDGPVISPTY 68
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAE 139
VLAR+H PRR GTPAM+HVDVYRLLDH ADL+ ELDSLDLDTDL +AVVV+EWG GLAE
Sbjct 69 VLARVHLPRRLGTPAMIHVDVYRLLDHRDADLVGELDSLDLDTDLAEAVVVMEWGAGLAE 128
Query 140 RLSQRHLDVRLERVSHSDTRIATWSW 165
L+ RHLD+RLERV +SD RIATW W
Sbjct 129 CLAARHLDIRLERVRYSDVRIATWQW 154
>gi|41410358|ref|NP_963194.1| hypothetical protein MAP4260 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118463418|ref|YP_883505.1| hypothetical protein MAV_4370 [Mycobacterium avium 104]
gi|41399192|gb|AAS06810.1| hypothetical protein MAP_4260 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118164705|gb|ABK65602.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336460770|gb|EGO39657.1| ATPase, YjeE family [Mycobacterium avium subsp. paratuberculosis
S397]
Length=159
Score = 203 bits (516), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 114/149 (77%), Positives = 127/149 (86%), Gaps = 3/149 (2%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
GTATLP +DT LG+RL EQL AGDVVVLSGPLGAGKTVLAKGIA AMDV+GP+TSP++
Sbjct 5 GTATLPTAQDTAALGARLAEQLRAGDVVVLSGPLGAGKTVLAKGIAAAMDVDGPVTSPSY 64
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDH---NSADLLSELDSLDLDTDLEDAVVVVEWGEG 136
VLAR+H PRRPG P M+HVD+YRLLDH ADLL ELDSLDLD+DL+DAVVV EWGEG
Sbjct 65 VLARVHPPRRPGAPTMIHVDLYRLLDHTGNQGADLLGELDSLDLDSDLDDAVVVAEWGEG 124
Query 137 LAERLSQRHLDVRLERVSHSDTRIATWSW 165
L ERL+ RHLD+RLERVS SD RIATW W
Sbjct 125 LVERLAPRHLDIRLERVSGSDVRIATWRW 153
>gi|254776800|ref|ZP_05218316.1| hypothetical protein MaviaA2_19336 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=159
Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 113/149 (76%), Positives = 126/149 (85%), Gaps = 3/149 (2%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
GTATLP +DT LG+RL QL AGDVVVLSGPLGAGKTVLAKGIA AMDV+GP+TSP++
Sbjct 5 GTATLPTAQDTAALGARLAAQLRAGDVVVLSGPLGAGKTVLAKGIAAAMDVDGPVTSPSY 64
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDH---NSADLLSELDSLDLDTDLEDAVVVVEWGEG 136
VLAR+H PRRPG P M+HVD+YRLLDH ADLL ELDSLDLD+DL+DAVVV EWGEG
Sbjct 65 VLARVHPPRRPGAPTMIHVDLYRLLDHTGNQGADLLGELDSLDLDSDLDDAVVVAEWGEG 124
Query 137 LAERLSQRHLDVRLERVSHSDTRIATWSW 165
L ERL+ RHLD+RLERVS SD RIATW W
Sbjct 125 LVERLAPRHLDIRLERVSGSDVRIATWRW 153
>gi|169630816|ref|YP_001704465.1| hypothetical protein MAB_3737c [Mycobacterium abscessus ATCC
19977]
gi|169242783|emb|CAM63811.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=155
Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/148 (73%), Positives = 123/148 (84%), Gaps = 0/148 (0%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
G+ LP +DTL G R+G+ L AGDVVVLSGPLGAGKT L KGIA MDVEGP+TSP++
Sbjct 6 GSVALPTAQDTLEFGKRIGQGLAAGDVVVLSGPLGAGKTALTKGIAQGMDVEGPVTSPSY 65
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAE 139
VLAR+H RRPG PA+VHVDVYRLL+H SADLL ELDSLDLDTDL+D+VVVVEWGEGLAE
Sbjct 66 VLARVHEARRPGAPALVHVDVYRLLEHQSADLLGELDSLDLDTDLDDSVVVVEWGEGLAE 125
Query 140 RLSQRHLDVRLERVSHSDTRIATWSWGR 167
RLS+ HLD+RLER + SD R ATW W R
Sbjct 126 RLSEHHLDIRLERAADSDERTATWHWSR 153
>gi|120402495|ref|YP_952324.1| hypothetical protein Mvan_1486 [Mycobacterium vanbaalenii PYR-1]
gi|119955313|gb|ABM12318.1| protein of unknown function UPF0079 [Mycobacterium vanbaalenii
PYR-1]
Length=154
Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 111/148 (75%), Positives = 122/148 (83%), Gaps = 0/148 (0%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
GT L +DT+ LG+RLG L AGDVVVLSGPLGAGKTVLAKGIA A+DVEGP+ SPTF
Sbjct 6 GTVELLSADDTIALGARLGRGLRAGDVVVLSGPLGAGKTVLAKGIAQALDVEGPVVSPTF 65
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAE 139
VLAR+HRPRR G PAMVHVD+YRLLD S DLL+ELDSLDLDTDL+DAVVVVEWGEGLAE
Sbjct 66 VLARVHRPRREGAPAMVHVDLYRLLDQASVDLLAELDSLDLDTDLDDAVVVVEWGEGLAE 125
Query 140 RLSQRHLDVRLERVSHSDTRIATWSWGR 167
RLS HLD+RLER +D R A W W R
Sbjct 126 RLSDSHLDIRLERAPDTDVRTAIWQWSR 153
>gi|118473830|ref|YP_885956.1| hypothetical protein MSMEG_1577 [Mycobacterium smegmatis str.
MC2 155]
gi|118175117|gb|ABK76013.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=155
Score = 179 bits (455), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 107/149 (72%), Positives = 121/149 (82%), Gaps = 0/149 (0%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
GTA EDT+ LG++LG L AGDVVVLSGPLGAGKTVLAKGIA AMDVEGP+ SPTF
Sbjct 7 GTARPATAEDTIALGAQLGAHLKAGDVVVLSGPLGAGKTVLAKGIAQAMDVEGPVVSPTF 66
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAE 139
VLAR+HR R+ PAMVHVD+YRLLD ADLL ELD+LDLDTDLEDAVVVVEWGEGLAE
Sbjct 67 VLARVHRARQADRPAMVHVDMYRLLDEPGADLLGELDALDLDTDLEDAVVVVEWGEGLAE 126
Query 140 RLSQRHLDVRLERVSHSDTRIATWSWGRS 168
RLS HLD+ ++R S ++TR TW W R+
Sbjct 127 RLSDSHLDIHIDRRSDTETRTVTWHWSRT 155
>gi|108798120|ref|YP_638317.1| hypothetical protein Mmcs_1148 [Mycobacterium sp. MCS]
gi|119867216|ref|YP_937168.1| hypothetical protein Mkms_1165 [Mycobacterium sp. KMS]
gi|126433778|ref|YP_001069469.1| hypothetical protein Mjls_1175 [Mycobacterium sp. JLS]
gi|108768539|gb|ABG07261.1| protein of unknown function UPF0079 [Mycobacterium sp. MCS]
gi|119693305|gb|ABL90378.1| protein of unknown function UPF0079 [Mycobacterium sp. KMS]
gi|126233578|gb|ABN96978.1| protein of unknown function UPF0079 [Mycobacterium sp. JLS]
Length=155
Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/149 (75%), Positives = 124/149 (84%), Gaps = 0/149 (0%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
GTA L +DT+ LG+RLG L AGDVVVLSGPLGAGKTVLAKGIA AMDVEGP+TSPTF
Sbjct 7 GTAELATAQDTMALGARLGAHLHAGDVVVLSGPLGAGKTVLAKGIAEAMDVEGPVTSPTF 66
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAE 139
VLAR+HR R+PG PAMVHVD+YRLLDH DLL+ELDSLDLDTDL+DAVVVVEWGEG+AE
Sbjct 67 VLARVHRARQPGRPAMVHVDMYRLLDHPGTDLLAELDSLDLDTDLDDAVVVVEWGEGVAE 126
Query 140 RLSQRHLDVRLERVSHSDTRIATWSWGRS 168
RLS HLD+RLER ++ R A W W R
Sbjct 127 RLSDSHLDIRLERAVDTEARTAIWQWSRQ 155
>gi|145225508|ref|YP_001136186.1| hypothetical protein Mflv_4932 [Mycobacterium gilvum PYR-GCK]
gi|315445861|ref|YP_004078740.1| hypothetical protein Mspyr1_43490 [Mycobacterium sp. Spyr1]
gi|145217994|gb|ABP47398.1| protein of unknown function UPF0079 [Mycobacterium gilvum PYR-GCK]
gi|315264164|gb|ADU00906.1| conserved hypothetical nucleotide-binding protein [Mycobacterium
sp. Spyr1]
Length=154
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/149 (75%), Positives = 125/149 (84%), Gaps = 0/149 (0%)
Query 19 GGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPT 78
G+A L EDT+ LG+ LG +L AGDVVVLSGPLGAGKTVLAKGIA AMDVEGP+ SPT
Sbjct 5 AGSAELLTAEDTVALGATLGRELRAGDVVVLSGPLGAGKTVLAKGIAQAMDVEGPVVSPT 64
Query 79 FVLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLA 138
FVLAR+HR RR G PAMVHVD+YRLLD +S DLL+ELDSLDLDTDL+DAVVVVEWGEG+A
Sbjct 65 FVLARVHRARREGAPAMVHVDLYRLLDQSSVDLLAELDSLDLDTDLDDAVVVVEWGEGVA 124
Query 139 ERLSQRHLDVRLERVSHSDTRIATWSWGR 167
ERLS HLD+RLER S +D R A W+W R
Sbjct 125 ERLSDSHLDIRLERSSDTDARTAIWTWSR 153
>gi|227832291|ref|YP_002833998.1| hypothetical protein cauri_0463 [Corynebacterium aurimucosum
ATCC 700975]
gi|262183852|ref|ZP_06043273.1| hypothetical protein CaurA7_07663 [Corynebacterium aurimucosum
ATCC 700975]
gi|227453307|gb|ACP32060.1| hypothetical protein cauri_0463 [Corynebacterium aurimucosum
ATCC 700975]
Length=154
Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/138 (61%), Positives = 95/138 (69%), Gaps = 2/138 (1%)
Query 28 EDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRP 87
ED G LG L AGD+V+L GPLGAGKT +GIA M V+G +TSPTFV+AR H P
Sbjct 17 EDAWAFGEELGAALEAGDLVILDGPLGAGKTTFTQGIARGMQVKGRVTSPTFVIAREH-P 75
Query 88 RRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHLD 147
R G P +VHVD YRLLDH S D L ELDSLDLDT++EDAVVV EWG G ERLS +L
Sbjct 76 SRVGGPTLVHVDAYRLLDH-SEDPLGELDSLDLDTEIEDAVVVAEWGGGFMERLSDVYLA 134
Query 148 VRLERVSHSDTRIATWSW 165
V + R S D R+ TW W
Sbjct 135 VTINRDSDDDVRVFTWKW 152
>gi|255323994|ref|ZP_05365120.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
gi|255299174|gb|EET78465.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
Length=166
Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/162 (53%), Positives = 107/162 (67%), Gaps = 10/162 (6%)
Query 13 RAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEG 72
R+ G+ L VEDT G LG L AGDVV+L GPLGAGKT L +G+A M V+G
Sbjct 2 RSSFPESGSRDLSTVEDTYAFGEELGAALEAGDVVILDGPLGAGKTTLTQGVAKGMQVKG 61
Query 73 PITSPTFVLARMHRPRRPGTPAMVHVDVYRLLDH---NSADLLSELDSLDLDTDLEDAVV 129
+TSPTFV+AR+HR G P +VHVD YRLLD NS D L ELD+LDLDT+LEDAVV
Sbjct 62 RVTSPTFVIARVHR-STVGGPDLVHVDAYRLLDEGGANSGDPLGELDALDLDTELEDAVV 120
Query 130 VVEWGEGLAERLSQRHLDVRLERV------SHSDTRIATWSW 165
+ EWG GL E++++R+L + ++R + D R TWSW
Sbjct 121 IAEWGGGLVEQIAERYLFISIDREPVDYAGAEEDVRRFTWSW 162
>gi|311740004|ref|ZP_07713838.1| possible bifunctional ATP-binding protein/phosphotransferase
[Corynebacterium pseudogenitalium ATCC 33035]
gi|311305077|gb|EFQ81146.1| possible bifunctional ATP-binding protein/phosphotransferase
[Corynebacterium pseudogenitalium ATCC 33035]
Length=166
Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 83/155 (54%), Positives = 105/155 (68%), Gaps = 10/155 (6%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
G+ L VEDT G LG L AGDVV+L GPLGAGKT L +G+A M V+G +TSPTF
Sbjct 9 GSRDLSTVEDTYAFGEELGAALEAGDVVILDGPLGAGKTTLTQGVAKGMQVKGRVTSPTF 68
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDH---NSADLLSELDSLDLDTDLEDAVVVVEWGEG 136
V+AR+HR G P +VHVD YRLLD NS D L ELD+LDLDT+LEDAV++ EWG G
Sbjct 69 VIARVHR-STVGGPDLVHVDAYRLLDEGGANSGDPLGELDALDLDTELEDAVIIAEWGGG 127
Query 137 LAERLSQRHLDVRLERV------SHSDTRIATWSW 165
L E++++R+L + ++R + D R TWSW
Sbjct 128 LVEQIAERYLFISIDREPVDYAGAEEDVRRFTWSW 162
>gi|227505269|ref|ZP_03935318.1| possible bifunctional ATP-binding protein/phosphotransferase
[Corynebacterium striatum ATCC 6940]
gi|227198168|gb|EEI78216.1| possible bifunctional ATP-binding protein/phosphotransferase
[Corynebacterium striatum ATCC 6940]
Length=154
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/146 (55%), Positives = 100/146 (69%), Gaps = 2/146 (1%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
GT + + G LG L AGD+V+L GPLGAGKT L +GIA M V+G +TSPTF
Sbjct 9 GTREIATADAAREFGKELGAVLEAGDLVILDGPLGAGKTTLTQGIAEGMQVKGRVTSPTF 68
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAE 139
V+AR HR G P++VHVD YRLLDH S D L ELD+LDLDT+LEDAVVV EWG G +
Sbjct 69 VIAREHRS-LVGGPSLVHVDAYRLLDH-SEDPLGELDALDLDTELEDAVVVAEWGGGFMD 126
Query 140 RLSQRHLDVRLERVSHSDTRIATWSW 165
+LS+ +L + + R DTR+ TW+W
Sbjct 127 QLSEAYLFININRERDDDTRVITWNW 152
>gi|306835299|ref|ZP_07468327.1| possible bifunctional ATP-binding protein/phosphotransferase
[Corynebacterium accolens ATCC 49726]
gi|304568819|gb|EFM44356.1| possible bifunctional ATP-binding protein/phosphotransferase
[Corynebacterium accolens ATCC 49726]
Length=166
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/162 (54%), Positives = 103/162 (64%), Gaps = 10/162 (6%)
Query 13 RAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEG 72
R+ GT L VE T G LG L AGDVV+L GPLGAGKT +GIA M V+G
Sbjct 2 RSNFPESGTRDLATVEQTHACGKELGAALEAGDVVILDGPLGAGKTTFTQGIAQGMQVKG 61
Query 73 PITSPTFVLARMHRPRRPGTPAMVHVDVYRLLDH---NSADLLSELDSLDLDTDLEDAVV 129
ITSPTFV+AR+HR R G P +VHVD YRLLD NS D L ELD+LDLDT+L DAVV
Sbjct 62 RITSPTFVIARVHRS-RVGGPDLVHVDAYRLLDEGGANSGDPLGELDALDLDTELADAVV 120
Query 130 VVEWGEGLAERLSQRHLDVRLERV------SHSDTRIATWSW 165
V EWG GL E+++ +L V ++R + D R +WSW
Sbjct 121 VAEWGGGLIEQIADSYLFVSIDREPAEFAGADEDVRRVSWSW 162
>gi|227502722|ref|ZP_03932771.1| possible bifunctional ATP-binding protein/phosphotransferase
[Corynebacterium accolens ATCC 49725]
gi|227076452|gb|EEI14415.1| possible bifunctional ATP-binding protein/phosphotransferase
[Corynebacterium accolens ATCC 49725]
Length=166
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/162 (52%), Positives = 104/162 (65%), Gaps = 10/162 (6%)
Query 13 RAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEG 72
R+ GT L VE T G LG L AGDVV+L GPLGAGKT +GIA M V+G
Sbjct 2 RSNFPESGTRDLATVEQTHACGKELGAALEAGDVVILDGPLGAGKTTFTQGIAQGMQVKG 61
Query 73 PITSPTFVLARMHRPRRPGTPAMVHVDVYRLLDH---NSADLLSELDSLDLDTDLEDAVV 129
+TSPTFV+AR+HR + G P +VHVD YRLLD NS D L ELD+LDLDT+L DAVV
Sbjct 62 RVTSPTFVIARVHR-SQVGGPDLVHVDAYRLLDEGGANSGDPLGELDALDLDTELADAVV 120
Query 130 VVEWGEGLAERLSQRHLDVRLERV------SHSDTRIATWSW 165
V EWG GL E++++ +L V ++R + D R +WSW
Sbjct 121 VAEWGGGLVEQIAESYLFVSIDREPAEFAGADEDVRRVSWSW 162
>gi|300779771|ref|ZP_07089627.1| possible bifunctional ATP-binding protein/phosphotransferase
[Corynebacterium genitalium ATCC 33030]
gi|300533881|gb|EFK54940.1| possible bifunctional ATP-binding protein/phosphotransferase
[Corynebacterium genitalium ATCC 33030]
Length=159
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/141 (55%), Positives = 99/141 (71%), Gaps = 5/141 (3%)
Query 28 EDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRP 87
EDT G +LG L AGD+V+L GPLGAGKT L +GIA M +G +TSPTF++AR H+
Sbjct 17 EDTRAFGKQLGASLEAGDMVILDGPLGAGKTTLTQGIAQGMGAKGRVTSPTFIIAREHKN 76
Query 88 RRPGTPAMVHVDVYRLLDH----NSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQ 143
G PA+VHVD YRLLD +AD L ELD+LDLD++LEDAVVV EWG GL E+L+
Sbjct 77 TGDG-PALVHVDAYRLLDSVGGTGTADPLGELDALDLDSELEDAVVVAEWGGGLVEQLTS 135
Query 144 RHLDVRLERVSHSDTRIATWS 164
R+L V L R + + R+ +W+
Sbjct 136 RYLLVTLNRDALDEGRVISWA 156
>gi|319949828|ref|ZP_08023846.1| hypothetical protein ES5_10107 [Dietzia cinnamea P4]
gi|319436506|gb|EFV91608.1| hypothetical protein ES5_10107 [Dietzia cinnamea P4]
Length=189
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/151 (54%), Positives = 92/151 (61%), Gaps = 8/151 (5%)
Query 24 LPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLAR 83
LP VEDT LG L L AGDVVVL GPLGAGKT L GIA + V G +TSPTFV+AR
Sbjct 27 LPTVEDTRALGVELAGLLRAGDVVVLDGPLGAGKTALTTGIAAGLGVRGRVTSPTFVIAR 86
Query 84 MHRPRRPGTPAMVHVDVYRLLDHN--------SADLLSELDSLDLDTDLEDAVVVVEWGE 135
H P PG P +VHVD YRLL + DL EL+SLDLD+ L+ VVVVEWG
Sbjct 87 RHPPATPGGPGLVHVDAYRLLGGQDPDGTRPTTGDLADELESLDLDSALDTDVVVVEWGA 146
Query 136 GLAERLSQRHLDVRLERVSHSDTRIATWSWG 166
G + L + L V L R +D R A WS G
Sbjct 147 GFVDSLVEAPLVVTLRRPDGTDVRTAVWSRG 177
>gi|336326374|ref|YP_004606340.1| Alanine racemase [Corynebacterium resistens DSM 45100]
gi|336102356|gb|AEI10176.1| Alanine racemase [Corynebacterium resistens DSM 45100]
Length=559
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/158 (45%), Positives = 99/158 (63%), Gaps = 14/158 (8%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
G AT ED + G R+GEQL AG VVVL+GPLGAGKT L +G+A ++V+G + SPTF
Sbjct 403 GHATASTSEDMVEAGRRIGEQLEAGTVVVLTGPLGAGKTTLTQGLAAGLEVKGRVQSPTF 462
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDHNSAD------------LLSELDSLDLDTDLEDA 127
+ R H+P G P M+H+D YRLL + ++ +L L+SLD+D+DL+
Sbjct 463 TIVRTHKPSGSGRPGMLHMDAYRLLGADVSEGVEPGKHVDRDVVLDALESLDIDSDLDQV 522
Query 128 VVVVEWGEGLAERLSQRHLDVRLERVSHSDTRIATWSW 165
VV+ EWG G+ E LS + LD+ ++R +D RI W W
Sbjct 523 VVIAEWGRGVVETLSDKVLDIEIDRA--ADERILRWEW 558
>gi|337290079|ref|YP_004629100.1| hypothetical protein CULC22_00463 [Corynebacterium ulcerans BR-AD22]
gi|334696202|gb|AEG80999.1| hypothetical protein CULC809_00459 [Corynebacterium ulcerans
809]
gi|334698385|gb|AEG83181.1| hypothetical protein CULC22_00463 [Corynebacterium ulcerans BR-AD22]
Length=164
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/143 (50%), Positives = 95/143 (67%), Gaps = 9/143 (6%)
Query 29 DTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRPR 88
DT L +LG L AGDV++L GPLGAGKT +G+A + V+G ITSPTFV+AR H+
Sbjct 18 DTQALAEQLGAALEAGDVLILDGPLGAGKTTFTQGLAKGLQVKGRITSPTFVIAREHK-S 76
Query 89 RPGTPAMVHVDVYRLLDHN--SADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHL 146
G PA++HVD YRL+D +AD + LDSLDL+T+LEDAVVV EWG L E++S +L
Sbjct 77 LVGGPALIHVDAYRLIDETAGAADPIGALDSLDLETELEDAVVVAEWGGELVEQISDSYL 136
Query 147 DVRLERVS------HSDTRIATW 163
+ ++R + S+ RI W
Sbjct 137 RISIDRTTAHRENPESEARIIRW 159
>gi|38233178|ref|NP_938945.1| hypothetical protein DIP0569 [Corynebacterium diphtheriae NCTC
13129]
gi|38199437|emb|CAE49081.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length=164
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/152 (47%), Positives = 96/152 (64%), Gaps = 9/152 (5%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
G L +T LG L AGDV++L GPLGAGKT +G+A ++V+G +TSPTF
Sbjct 9 GNIRLETAAETQAFAEELGRHLEAGDVIILDGPLGAGKTTFTQGLARGLNVKGRVTSPTF 68
Query 80 VLARMHRPRRPGTPAMVHVDVYRLLDH--NSADLLSELDSLDLDTDLEDAVVVVEWGEGL 137
V+AR H+ G P++VHVD YRL+D + D + LDSLDL+T+LEDAVVV EWG GL
Sbjct 69 VIAREHKSLSGG-PSLVHVDAYRLIDDAAGATDPIGALDSLDLETELEDAVVVAEWGGGL 127
Query 138 AERLSQRHLDVRLERVS------HSDTRIATW 163
E+++ +L + +R + S+ RI TW
Sbjct 128 VEQITDSYLLITFDRTTAHIDDPDSEARIVTW 159
>gi|227549894|ref|ZP_03979943.1| possible bifunctional ATP-binding protein/phosphotransferase
[Corynebacterium lipophiloflavum DSM 44291]
gi|227078040|gb|EEI16003.1| possible bifunctional ATP-binding protein/phosphotransferase
[Corynebacterium lipophiloflavum DSM 44291]
Length=165
Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/125 (57%), Positives = 91/125 (73%), Gaps = 2/125 (1%)
Query 29 DTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRPR 88
DT LG LG L AGDVV+L GPLGAGKT L +GIA M V G +TSPTFV+AR H+
Sbjct 18 DTKRLGRELGAALEAGDVVILDGPLGAGKTTLTQGIADGMAVSGRVTSPTFVIAREHKA- 76
Query 89 RPGTPAMVHVDVYRLL-DHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHLD 147
R G P++VHVD YRL+ + +S D L ELD+LDL+TDL+ AV+V EWG GL E+++ +L
Sbjct 77 RTGRPSLVHVDAYRLIGEGSSGDPLGELDALDLETDLDTAVIVAEWGGGLVEQIASAYLL 136
Query 148 VRLER 152
V ++R
Sbjct 137 VTIDR 141
>gi|333921695|ref|YP_004495276.1| hypothetical protein AS9A_4042 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483916|gb|AEF42476.1| hypothetical protein AS9A_4042 [Amycolicicoccus subflavus DQS3-9A1]
Length=145
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/140 (61%), Positives = 100/140 (72%), Gaps = 11/140 (7%)
Query 37 LGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRP---RRPGTP 93
+ L AGDVVVLSGPLGAGKT LA+GI + V G ++SPTF++AR HR RR G P
Sbjct 1 MAADLTAGDVVVLSGPLGAGKTALARGIGAGLGVMGVVSSPTFIIAREHRAGQARRGGGP 60
Query 94 --AMVHVDVYRLL-DHNSAD-----LLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRH 145
AMVHVD YRLL D + A L ELD+LDLDT+L+DAVVVVEWGEGLAERL+ RH
Sbjct 61 PVAMVHVDAYRLLGDSDRAHDGGRLALDELDALDLDTELDDAVVVVEWGEGLAERLADRH 120
Query 146 LDVRLERVSHSDTRIATWSW 165
L VRLER + + R+A W W
Sbjct 121 LLVRLERHTDDEVRVAHWQW 140
>gi|296268599|ref|YP_003651231.1| hypothetical protein Tbis_0611 [Thermobispora bispora DSM 43833]
gi|296091386|gb|ADG87338.1| protein of unknown function UPF0079 [Thermobispora bispora DSM
43833]
Length=153
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/133 (53%), Positives = 92/133 (70%), Gaps = 7/133 (5%)
Query 28 EDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRP 87
++T +G+RL L GD+VVLSGPLGAGKT L +GI + V GPITSPTFV+AR+H P
Sbjct 10 DETRAVGARLAALLRPGDLVVLSGPLGAGKTTLVQGIGEGLKVRGPITSPTFVIARVH-P 68
Query 88 RRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHLD 147
G P +VHVD YR+ D +SE+D LDLD LE++V VVEWGEGL + L++ L+
Sbjct 69 SLCGGPPLVHVDAYRIGD------VSEIDDLDLDASLEESVTVVEWGEGLVDGLAEDRLE 122
Query 148 VRLERVSHSDTRI 160
VR+ER + R+
Sbjct 123 VRIERGPEGEERV 135
>gi|257054531|ref|YP_003132363.1| hypothetical protein Svir_04610 [Saccharomonospora viridis DSM
43017]
gi|256584403|gb|ACU95536.1| conserved hypothetical nucleotide-binding protein [Saccharomonospora
viridis DSM 43017]
Length=157
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/142 (53%), Positives = 98/142 (70%), Gaps = 7/142 (4%)
Query 21 TATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFV 80
+A LP +D + G LGE L GD+V+LSGPLGAGKT + +GIA M V G ++SPTFV
Sbjct 5 SAELPTPDDAMRFGRALGELLRPGDLVLLSGPLGAGKTTMTRGIAEGMGVSGRVSSPTFV 64
Query 81 LARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAER 140
LAR+H G P +VHVD YRL D L++L+ LDLDT+L+ A +VVEWGEG+AE+
Sbjct 65 LARVHPAGESGVP-LVHVDAYRL----GGD-LAQLEDLDLDTELDRAALVVEWGEGMAEQ 118
Query 141 LSQRHLDVRLERVSHSDTRIAT 162
LS+ +L VRL+R D R+ T
Sbjct 119 LSEDYLVVRLDR-RPDDVRVVT 139
>gi|111023145|ref|YP_706117.1| hypothetical protein RHA1_ro06182 [Rhodococcus jostii RHA1]
gi|110822675|gb|ABG97959.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=162
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/150 (60%), Positives = 100/150 (67%), Gaps = 5/150 (3%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
GT LP EDT G L L AGD+VVL GPLGAGKT L KGI + V+G +TSPTF
Sbjct 12 GTVVLPTAEDTEQFGRDLARGLVAGDLVVLDGPLGAGKTALTKGIGAGLGVQGRVTSPTF 71
Query 80 VLARMHRP-RRP--GTP-AMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGE 135
V+AR HR RP GTP MVHVD YR L + L ELD+LDLDTDL AVVVVEWGE
Sbjct 72 VIAREHRAGTRPDGGTPVGMVHVDAYR-LGGSGPHALDELDALDLDTDLAAAVVVVEWGE 130
Query 136 GLAERLSQRHLDVRLERVSHSDTRIATWSW 165
G+AE+L+ RHL VRL R +D R A W W
Sbjct 131 GIAEQLADRHLRVRLRREPETDVRTAHWEW 160
>gi|302205564|gb|ADL09906.1| UPF0079 ATP-binding protein [Corynebacterium pseudotuberculosis
C231]
gi|302330119|gb|ADL20313.1| UPF0079 ATP-binding protein [Corynebacterium pseudotuberculosis
1002]
gi|308275799|gb|ADO25698.1| Conserved hypothetical protein [Corynebacterium pseudotuberculosis
I19]
gi|341824226|gb|AEK91747.1| UPF0079 ATP-binding protein [Corynebacterium pseudotuberculosis
PAT10]
Length=164
Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/143 (49%), Positives = 93/143 (66%), Gaps = 9/143 (6%)
Query 29 DTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRPR 88
DT L +LG L GDV++L GPLGAGKT +G+A + V+G ITSPTFV+AR H+
Sbjct 18 DTQALAEQLGAALEPGDVLILDGPLGAGKTTFTQGLAKGLQVKGRITSPTFVIAREHK-S 76
Query 89 RPGTPAMVHVDVYRLLDHN--SADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHL 146
G P ++HVD YRL+D +AD + LDSLDL+T+LEDAVVV EWG L E++S +L
Sbjct 77 LIGGPTLIHVDAYRLIDETAGAADPIGALDSLDLETELEDAVVVAEWGGDLVEQISDSYL 136
Query 147 DVRLERVS------HSDTRIATW 163
+ ++R + S+ RI W
Sbjct 137 RISIDRTTAHMENPDSEARIIRW 159
>gi|226305405|ref|YP_002765363.1| ATPase [Rhodococcus erythropolis PR4]
gi|226184520|dbj|BAH32624.1| putative ATPase [Rhodococcus erythropolis PR4]
Length=163
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/155 (59%), Positives = 103/155 (67%), Gaps = 5/155 (3%)
Query 15 GLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPI 74
GL G TL EDT G RL L AGD+VVL GPLGAGKT L +GI + V+G +
Sbjct 8 GLPESGQITLETAEDTEAFGRRLAAGLVAGDLVVLDGPLGAGKTALTRGIGAGLGVQGRV 67
Query 75 TSPTFVLARMHRP-RRP--GTP-AMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVV 130
TSPTFV+AR HRP RP G P M+HVD YRL D + L ELD+LDLDTDL DAVVV
Sbjct 68 TSPTFVIAREHRPGTRPGGGVPVGMIHVDAYRLGD-SGPHALDELDALDLDTDLTDAVVV 126
Query 131 VEWGEGLAERLSQRHLDVRLERVSHSDTRIATWSW 165
VEWG + ERL +RHL V+L R SD R A+WSW
Sbjct 127 VEWGGDVVERLVERHLRVQLHREPESDVRTASWSW 161
>gi|152964698|ref|YP_001360482.1| hypothetical protein Krad_0729 [Kineococcus radiotolerans SRS30216]
gi|151359215|gb|ABS02218.1| protein of unknown function UPF0079 [Kineococcus radiotolerans
SRS30216]
Length=176
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/130 (55%), Positives = 89/130 (69%), Gaps = 7/130 (5%)
Query 23 TLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLA 82
LP +DT G+R+G L AGD+V+LSG LGAGKT +G+A A+ V GP+TSPTFV+A
Sbjct 13 VLPGPQDTEAFGARVGASLRAGDLVLLSGDLGAGKTTFTRGLARALGVRGPVTSPTFVIA 72
Query 83 RMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLS 142
R+H P G P +VHVD YRL L+E+D LDLDTD E+AV VVEWG GL E LS
Sbjct 73 RVH-PSLVGGPELVHVDAYRL------GSLAEVDDLDLDTDAEEAVTVVEWGRGLVEELS 125
Query 143 QRHLDVRLER 152
+ L++ L R
Sbjct 126 RDRLEIDLLR 135
>gi|229489316|ref|ZP_04383179.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229323413|gb|EEN89171.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=163
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/155 (59%), Positives = 103/155 (67%), Gaps = 5/155 (3%)
Query 15 GLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPI 74
GL G TL EDT G RL L AGD+VVL GPLGAGKT L +GI + V+G +
Sbjct 8 GLPVSGQITLETAEDTEAFGRRLAAGLVAGDLVVLDGPLGAGKTALTRGIGAGLGVQGRV 67
Query 75 TSPTFVLARMHRP-RRP--GTP-AMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVV 130
TSPTFV+AR HRP RP G P M+HVD YRL D + L ELD+LDLDTDL DAVVV
Sbjct 68 TSPTFVIAREHRPGTRPGGGVPVGMIHVDAYRLGD-SGPHALDELDALDLDTDLTDAVVV 126
Query 131 VEWGEGLAERLSQRHLDVRLERVSHSDTRIATWSW 165
VEWG + ERL +RHL V+L R SD R A+WSW
Sbjct 127 VEWGGDVVERLVERHLRVQLHREPESDVRTASWSW 161
>gi|296119281|ref|ZP_06837849.1| putative ATPase or kinase [Corynebacterium ammoniagenes DSM 20306]
gi|295967673|gb|EFG80930.1| putative ATPase or kinase [Corynebacterium ammoniagenes DSM 20306]
Length=163
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/162 (52%), Positives = 103/162 (64%), Gaps = 10/162 (6%)
Query 16 LTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPIT 75
L+ G +T G LG L GDVV+L GPLGAGKT L +GIA M V+G +T
Sbjct 3 LSSHGRVECATASETQAFGEELGRSLAFGDVVILDGPLGAGKTTLTQGIARGMQVKGRVT 62
Query 76 SPTFVLARMHRPRRPGTPAMVHVDVYRLLDH---NSADLLSELDSLDLDTDLEDAVVVVE 132
SPTFV+AR HR G PA+VHVD YRLL N+AD L ELD+LDLDTDL++AVVV E
Sbjct 63 SPTFVIAREHRSLVDG-PALVHVDAYRLLGEGTGNTADPLGELDALDLDTDLDNAVVVAE 121
Query 133 WGEGLAERLSQRHLDVRLERVS------HSDTRIATWSWGRS 168
WG GL E++++R+L V L+R S S R+ TW W S
Sbjct 122 WGGGLVEQITERYLLVTLDRESALEDDPDSHARVITWRWSSS 163
>gi|300857829|ref|YP_003782812.1| hypothetical protein cpfrc_00412 [Corynebacterium pseudotuberculosis
FRC41]
gi|300685283|gb|ADK28205.1| hypothetical protein cpfrc_00412 [Corynebacterium pseudotuberculosis
FRC41]
Length=164
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/143 (49%), Positives = 92/143 (65%), Gaps = 9/143 (6%)
Query 29 DTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRPR 88
DT L +LG L GDV++L GPLGAGKT +G+A + V+G ITSPTFV+AR H
Sbjct 18 DTQALAEQLGAALEPGDVLILDGPLGAGKTTFTQGLAKGLQVKGRITSPTFVIAREHM-S 76
Query 89 RPGTPAMVHVDVYRLLDHN--SADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHL 146
G P ++HVD YRL+D +AD + LDSLDL+T+LEDAVVV EWG L E++S +L
Sbjct 77 LIGGPTLIHVDAYRLIDETAGAADPIGALDSLDLETELEDAVVVAEWGGDLVEQISDSYL 136
Query 147 DVRLERVS------HSDTRIATW 163
+ ++R + S+ RI W
Sbjct 137 RISIDRTTAHMENPDSEARIIRW 159
>gi|262201660|ref|YP_003272868.1| hypothetical protein Gbro_1713 [Gordonia bronchialis DSM 43247]
gi|262085007|gb|ACY20975.1| protein of unknown function UPF0079 [Gordonia bronchialis DSM
43247]
Length=170
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/142 (52%), Positives = 86/142 (61%), Gaps = 6/142 (4%)
Query 24 LPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLAR 83
LP V DT G+ L L AGD+V+L GPLGAGKT LA+GI + V G ITSPTF++AR
Sbjct 31 LPEVSDTEAFGAELATCLRAGDLVILDGPLGAGKTALARGIGAGLGVRGRITSPTFIIAR 90
Query 84 MHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQ 143
HRP G P MVHVD YRL + D L L AVVVVEWG+G+AERL+
Sbjct 91 EHRPAESGGPGMVHVDAYRLGGLDELDALDLDTDLAD------AVVVVEWGDGVAERLAD 144
Query 144 RHLDVRLERVSHSDTRIATWSW 165
H+ VRL R +D R W W
Sbjct 145 HHVRVRLRRDPDTDVRHVEWEW 166
>gi|213964899|ref|ZP_03393098.1| alanine racemase [Corynebacterium amycolatum SK46]
gi|213952435|gb|EEB63818.1| alanine racemase [Corynebacterium amycolatum SK46]
Length=537
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/147 (52%), Positives = 95/147 (65%), Gaps = 4/147 (2%)
Query 25 PRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARM 84
P ED LG +G +L AGD+V+L GPLGAGKT L +GIA M+V G +TSPTF +AR
Sbjct 391 PTAEDMRDLGEEIGRELAAGDLVILDGPLGAGKTTLTQGIARGMNVRGRVTSPTFTIARE 450
Query 85 HRPRRPGTPAMVHVDVYRLLDH----NSADLLSELDSLDLDTDLEDAVVVVEWGEGLAER 140
HRP ++HVD YRL + + LDSLDLDTDLED+VVV EWG GLAE
Sbjct 451 HRPLATDGVTLIHVDAYRLFGEEGPGSDGEAFDALDSLDLDTDLEDSVVVAEWGMGLAEV 510
Query 141 LSQRHLDVRLERVSHSDTRIATWSWGR 167
LS+R+L V ++R D R+ TW W +
Sbjct 511 LSERYLQVSIDRSRDDDARVVTWKWSK 537
>gi|311744758|ref|ZP_07718554.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
gi|311311875|gb|EFQ81796.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
Length=326
Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/120 (57%), Positives = 84/120 (70%), Gaps = 7/120 (5%)
Query 33 LGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRPRRPGT 92
+ +RL L GD++VLSG LGAGKT +G+ A+DV GPITSPTFVLAR H P
Sbjct 167 IAARLATLLRPGDLLVLSGDLGAGKTTFTQGLGAALDVRGPITSPTFVLARTH-PSLAEG 225
Query 93 PAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHLDVRLER 152
P +VHVD YRL D ++ELD LDLD E+AV VVEWGEGLAE+L++ LD+R+ER
Sbjct 226 PPLVHVDAYRLGD------VAELDDLDLDATTEEAVTVVEWGEGLAEQLAESRLDIRIER 279
>gi|226365651|ref|YP_002783434.1| ATPase [Rhodococcus opacus B4]
gi|226244141|dbj|BAH54489.1| putative ATPase [Rhodococcus opacus B4]
Length=162
Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/150 (58%), Positives = 97/150 (65%), Gaps = 5/150 (3%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
GT L EDT G L L AGD+VVL GPLGAGKT L KGI + V+G +TSPTF
Sbjct 12 GTVVLATAEDTEEFGRTLARGLVAGDLVVLDGPLGAGKTALTKGIGAGLGVQGRVTSPTF 71
Query 80 VLARMHRP-RRPGTPA---MVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGE 135
V+AR HR RPG A MVHVD YR L + L ELD+LDLDTDL AVVVVEWGE
Sbjct 72 VIAREHRAGTRPGGGAPVGMVHVDAYR-LGGSGPHALDELDALDLDTDLAAAVVVVEWGE 130
Query 136 GLAERLSQRHLDVRLERVSHSDTRIATWSW 165
G+ E+L+ RHL VRL R SD R A W W
Sbjct 131 GIVEQLADRHLRVRLRREPESDVRTAHWEW 160
>gi|54022848|ref|YP_117090.1| hypothetical protein nfa8810 [Nocardia farcinica IFM 10152]
gi|54014356|dbj|BAD55726.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=165
Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/146 (58%), Positives = 96/146 (66%), Gaps = 8/146 (5%)
Query 23 TLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLA 82
TLP V DT LG L QL AGD+VVL GPLGAGKT L +GIA + V+G ++SPTF++A
Sbjct 15 TLPTVADTEALGRELAAQLAAGDLVVLDGPLGAGKTALTRGIAAGLGVQGRVSSPTFIIA 74
Query 83 RMHR--PRRPGTPA-MVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAE 139
R HR PR P MVHVD YRL L ELD+LDLDTDL AVVVVEWG G+ E
Sbjct 75 RQHRAGPRDGAPPVPMVHVDAYRL-----GGDLDELDALDLDTDLHQAVVVVEWGRGVVE 129
Query 140 RLSQRHLDVRLERVSHSDTRIATWSW 165
L+ RHL VRL R S+ R A W W
Sbjct 130 HLTDRHLWVRLTREPDSEVRTAVWEW 155
>gi|238061047|ref|ZP_04605756.1| hypothetical protein MCAG_02013 [Micromonospora sp. ATCC 39149]
gi|237882858|gb|EEP71686.1| hypothetical protein MCAG_02013 [Micromonospora sp. ATCC 39149]
Length=172
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/127 (55%), Positives = 86/127 (68%), Gaps = 4/127 (3%)
Query 22 ATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVL 81
A LP VEDT G RL L AGD+++L+GPLGAGKT L +GI + V G +TSPTFV+
Sbjct 17 AKLPTVEDTHAFGRRLAGVLRAGDLLLLTGPLGAGKTALTRGIGAGLGVRGDVTSPTFVI 76
Query 82 ARMHR--PRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAE 139
AR+HR P R A+VH D YRL D + D +E+D LDLD ++D+V VVEWGEGL E
Sbjct 77 ARVHRPDPERGRGVALVHADAYRLGD--ATDPRAEIDDLDLDASVDDSVTVVEWGEGLVE 134
Query 140 RLSQRHL 146
+L HL
Sbjct 135 QLVDAHL 141
>gi|315501354|ref|YP_004080241.1| hypothetical protein ML5_0540 [Micromonospora sp. L5]
gi|315407973|gb|ADU06090.1| Uncharacterized protein family UPF0079, ATPase [Micromonospora
sp. L5]
Length=160
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/125 (55%), Positives = 84/125 (68%), Gaps = 4/125 (3%)
Query 24 LPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLAR 83
L VEDT G RL L AGD+++LSGPLGAGKT L +GI + V G ITSPTFV+AR
Sbjct 7 LKTVEDTHEFGRRLAGVLRAGDLLLLSGPLGAGKTALTQGIGAGLGVRGDITSPTFVIAR 66
Query 84 MHR--PRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERL 141
+HR P R G +VH D YRL +AD +E+D LDLD +++AV VVEWGEG+ E+L
Sbjct 67 VHRPDPARGGRVTLVHADAYRL--GEAADPRAEIDDLDLDASVDEAVTVVEWGEGMVEQL 124
Query 142 SQRHL 146
HL
Sbjct 125 VDAHL 129
>gi|343928268|ref|ZP_08767721.1| putative ATPase [Gordonia alkanivorans NBRC 16433]
gi|343761798|dbj|GAA14647.1| putative ATPase [Gordonia alkanivorans NBRC 16433]
Length=175
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/155 (57%), Positives = 103/155 (67%), Gaps = 7/155 (4%)
Query 20 GTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTF 79
GT LP V DT G+ L L GD+V+L GPLGAGKT LA+GI + +EG +TSPTF
Sbjct 21 GTRELPEVADTEAFGAELATVLSPGDLVILDGPLGAGKTALARGIGAGLGIEGRVTSPTF 80
Query 80 VLARMHRPRRPGTPAMVHVDVYR-------LLDHNSADLLSELDSLDLDTDLEDAVVVVE 132
++AR HRP RPG PAMVHVD YR + L ELD+LDLDT+L DAVVVVE
Sbjct 81 IIAREHRPGRPGGPAMVHVDAYRLGLAGGDGDGGLARGGLDELDALDLDTELTDAVVVVE 140
Query 133 WGEGLAERLSQRHLDVRLERVSHSDTRIATWSWGR 167
WGEG+AERL+QR+L VRL R +D R W W R
Sbjct 141 WGEGVAERLAQRYLVVRLRRDVDTDVRHVEWEWVR 175
>gi|256824608|ref|YP_003148568.1| hypothetical protein Ksed_07470 [Kytococcus sedentarius DSM 20547]
gi|256688001|gb|ACV05803.1| conserved hypothetical nucleotide-binding protein [Kytococcus
sedentarius DSM 20547]
Length=170
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/129 (52%), Positives = 88/129 (69%), Gaps = 7/129 (5%)
Query 33 LGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRPRRPGT 92
LG RLGE + AGDV+VL+G LGAGKT L +G+ + V G +TSPTFV++R+H P G
Sbjct 15 LGRRLGEWVRAGDVLVLTGELGAGKTTLTRGLGEGLGVRGEVTSPTFVISRVH-PSTTGG 73
Query 93 PAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHLDVRLER 152
PA+VHVD YRL +E+D +DL+TDL DAV+V EWG GL E+L+ R L+V + R
Sbjct 74 PALVHVDAYRLGSR------AEVDDIDLETDLADAVLVAEWGAGLVEQLTDRWLEVTVRR 127
Query 153 VSHSDTRIA 161
+ D + A
Sbjct 128 ATGHDAQEA 136
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130819067360
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40