BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3426

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|57117106|ref|YP_177972.1|  PPE family protein [Mycobacterium t...   481    5e-134
gi|289444916|ref|ZP_06434660.1|  PPE family protein [Mycobacteriu...   254    1e-65 
gi|148824632|ref|YP_001289386.1|  PPE family protein [Mycobacteri...   247    1e-63 
gi|308232462|ref|ZP_07416100.2|  PPE family protein [Mycobacteriu...   177    1e-42 
gi|289747262|ref|ZP_06506640.1|  PPE family protein [Mycobacteriu...   177    1e-42 
gi|15843022|ref|NP_338059.1|  PPE family protein [Mycobacterium t...   176    2e-42 
gi|253800472|ref|YP_003033473.1|  PPE family protein [Mycobacteri...   176    2e-42 
gi|298526912|ref|ZP_07014321.1|  PPE family protein [Mycobacteriu...   176    4e-42 
gi|289445029|ref|ZP_06434773.1|  PPE family protein [Mycobacteriu...   174    6e-42 
gi|167968681|ref|ZP_02550958.1|  PPE family protein [Mycobacteriu...   172    3e-41 
gi|289752144|ref|ZP_06511522.1|  PPE family protein [Mycobacteriu...   172    3e-41 
gi|289763608|ref|ZP_06522986.1|  PPE family protein [Mycobacteriu...   172    3e-41 
gi|289444917|ref|ZP_06434661.1|  PPE family protein [Mycobacteriu...   172    3e-41 
gi|254552530|ref|ZP_05142977.1|  PPE family protein [Mycobacteriu...   169    4e-40 
gi|148824631|ref|YP_001289385.1|  hypothetical protein TBFG_13458...   152    3e-35 
gi|31794606|ref|NP_857099.1|  PPE family protein [Mycobacterium b...   150    1e-34 
gi|57117105|ref|YP_177971.1|  PPE family protein [Mycobacterium t...   147    8e-34 
gi|289449124|ref|ZP_06438868.1|  PPE family protein [Mycobacteriu...   147    9e-34 
gi|289571657|ref|ZP_06451884.1|  PPE family protein [Mycobacteriu...   138    6e-31 
gi|148824635|ref|YP_001289389.1|  PPE family protein [Mycobacteri...   137    1e-30 
gi|339299856|gb|AEJ51966.1|  PPE family protein [Mycobacterium tu...   136    2e-30 
gi|323717911|gb|EGB27100.1|  PPE family protein [Mycobacterium tu...   136    3e-30 
gi|294995796|ref|ZP_06801487.1|  PPE family protein [Mycobacteriu...   118    7e-25 
gi|306777764|ref|ZP_07416101.1|  putative PPE family protein [Myc...   105    4e-21 
gi|289747254|ref|ZP_06506632.1|  PPE family protein [Mycobacteriu...  95.9    5e-18 
gi|183980225|ref|YP_001848516.1|  PPE family protein, PPE51_2 [My...  76.3    3e-12 
gi|167968687|ref|ZP_02550964.1|  PPE family protein [Mycobacteriu...  75.5    5e-12 
gi|342861517|ref|ZP_08718164.1|  PPE family protein [Mycobacteriu...  75.5    6e-12 
gi|306807071|ref|ZP_07443739.1|  putative PPE family protein [Myc...  71.2    1e-10 
gi|342861033|ref|ZP_08717682.1|  PPE family protein [Mycobacteriu...  70.5    2e-10 
gi|296167733|ref|ZP_06849950.1|  PPE family protein [Mycobacteriu...  70.5    2e-10 
gi|240171260|ref|ZP_04749919.1|  PPE family protein [Mycobacteriu...  68.6    7e-10 
gi|118466613|ref|YP_881225.1|  PPE family protein [Mycobacterium ...  67.8    1e-09 
gi|342859619|ref|ZP_08716272.1|  PPE family protein [Mycobacteriu...  67.0    2e-09 
gi|333992835|ref|YP_004525449.1|  PPE family protein PPE51_2 [Myc...  67.0    2e-09 
gi|308380003|ref|ZP_07669094.1|  putative PPE family protein [Myc...  66.2    3e-09 
gi|183981917|ref|YP_001850208.1|  PPE family protein [Mycobacteri...  66.2    3e-09 
gi|240169713|ref|ZP_04748372.1|  PPE family protein [Mycobacteriu...  66.2    4e-09 
gi|254820680|ref|ZP_05225681.1|  PPE family protein [Mycobacteriu...  65.9    5e-09 
gi|333989927|ref|YP_004522541.1|  PPE family protein PPE51_2 [Myc...  64.3    1e-08 
gi|336458159|gb|EGO37142.1|  PPE-repeat containing protein [Mycob...  64.3    2e-08 
gi|340627118|ref|YP_004745570.1|  PPE family protein [Mycobacteri...  62.0    7e-08 
gi|308232493|ref|ZP_07416221.2|  PPE family protein [Mycobacteriu...  61.6    9e-08 
gi|289440961|ref|ZP_06430705.1|  PPE family protein [Mycobacteriu...  61.6    9e-08 
gi|31794708|ref|NP_857201.1|  PPE family protein [Mycobacterium b...  61.6    9e-08 
gi|289572184|ref|ZP_06452411.1|  PPE family protein [Mycobacteriu...  61.2    1e-07 
gi|339633530|ref|YP_004725172.1|  PPE family protein [Mycobacteri...  61.2    1e-07 
gi|31792998|ref|NP_855491.1|  hypothetical protein Mb1838 [Mycoba...  60.8    1e-07 
gi|254231991|ref|ZP_04925318.1|  PPE family protein [Mycobacteriu...  60.8    2e-07 
gi|148823022|ref|YP_001287776.1|  PPE family protein [Mycobacteri...  60.5    2e-07 


>gi|57117106|ref|YP_177972.1| PPE family protein [Mycobacterium tuberculosis H37Rv]
 gi|148663290|ref|YP_001284813.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
 gi|167968685|ref|ZP_02550962.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
 gi|306777766|ref|ZP_07416103.1| putative PPE family protein [Mycobacterium tuberculosis SUMu001]
 gi|2496464|sp|Q50702.1|PPE58_MYCTU RecName: Full=Uncharacterized PPE family protein PPE58
 gi|41352787|emb|CAE55597.1| PPE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148507442|gb|ABQ75251.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
 gi|308213900|gb|EFO73299.1| putative PPE family protein [Mycobacterium tuberculosis SUMu001]
Length=232

 Score =  481 bits (1237),  Expect = 5e-134, Method: Compositional matrix adjust.
 Identities = 232/232 (100%), Positives = 232/232 (100%), Gaps = 0/232 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS
Sbjct  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA
Sbjct  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120

Query  121  SNVAGGKHSSNRRPRGTIRAVPGRKYPSNGPLSKLDPICAIEAAPMAGAAADPQERVGPR  180
            SNVAGGKHSSNRRPRGTIRAVPGRKYPSNGPLSKLDPICAIEAAPMAGAAADPQERVGPR
Sbjct  121  SNVAGGKHSSNRRPRGTIRAVPGRKYPSNGPLSKLDPICAIEAAPMAGAAADPQERVGPR  180

Query  181  GRRGLAGQQQCRGRPGPSLRCSHDTPRFQMNQAFHTMVNMLLTCFACQEKPR  232
            GRRGLAGQQQCRGRPGPSLRCSHDTPRFQMNQAFHTMVNMLLTCFACQEKPR
Sbjct  181  GRRGLAGQQQCRGRPGPSLRCSHDTPRFQMNQAFHTMVNMLLTCFACQEKPR  232


>gi|289444916|ref|ZP_06434660.1| PPE family protein [Mycobacterium tuberculosis T46]
 gi|289571651|ref|ZP_06451878.1| PPE family protein [Mycobacterium tuberculosis T17]
 gi|289576158|ref|ZP_06456385.1| PPE family protein [Mycobacterium tuberculosis K85]
 14 more sequence titles
 
gi|289752145|ref|ZP_06511523.1| PPE family protein [Mycobacterium tuberculosis T92]
 gi|289755555|ref|ZP_06514933.1| PPE family protein [Mycobacterium tuberculosis EAS054]
 gi|289759585|ref|ZP_06518963.1| PPE family protein [Mycobacterium tuberculosis T85]
 gi|294995801|ref|ZP_06801492.1| PPE family protein [Mycobacterium tuberculosis 210]
 gi|298526908|ref|ZP_07014317.1| PPE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|289417835|gb|EFD15075.1| PPE family protein [Mycobacterium tuberculosis T46]
 gi|289540589|gb|EFD45167.1| PPE family protein [Mycobacterium tuberculosis K85]
 gi|289545405|gb|EFD49053.1| PPE family protein [Mycobacterium tuberculosis T17]
 gi|289692732|gb|EFD60161.1| PPE family protein [Mycobacterium tuberculosis T92]
 gi|289696142|gb|EFD63571.1| PPE family protein [Mycobacterium tuberculosis EAS054]
 gi|289715149|gb|EFD79161.1| PPE family protein [Mycobacterium tuberculosis T85]
 gi|298496702|gb|EFI31996.1| PPE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|305662420|gb|ADM62324.1| PPE58 [Mycobacterium tuberculosis]
 gi|305662425|gb|ADM62328.1| PPE58 [Mycobacterium tuberculosis]
Length=176

 Score =  254 bits (648),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS
Sbjct  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA
Sbjct  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120

Query  121  SNVAG  125
            SNVAG
Sbjct  121  SNVAG  125


>gi|148824632|ref|YP_001289386.1| PPE family protein [Mycobacterium tuberculosis F11]
 gi|289747255|ref|ZP_06506633.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
 gi|148723159|gb|ABR07784.1| PPE family protein [Mycobacterium tuberculosis F11]
 gi|289687783|gb|EFD55271.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
 gi|339296248|gb|AEJ48359.1| PPE family protein [Mycobacterium tuberculosis CCDC5079]
 gi|339299850|gb|AEJ51960.1| PPE family protein [Mycobacterium tuberculosis CCDC5180]
Length=173

 Score =  247 bits (630),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%), Gaps = 0/122 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWM  63
            MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWM
Sbjct  1    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWM  60

Query  64   ADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNV  123
            ADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNV
Sbjct  61   ADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNV  120

Query  124  AG  125
            AG
Sbjct  121  AG  122


>gi|308232462|ref|ZP_07416100.2| PPE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308370263|ref|ZP_07666905.1| PPE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308371345|ref|ZP_07667143.1| PPE family protein [Mycobacterium tuberculosis SUMu003]
 7 more sequence titles
 
gi|308372544|ref|ZP_07667407.1| PPE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308380698|ref|ZP_07669260.1| PPE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308213940|gb|EFO73339.1| PPE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308324885|gb|EFP13736.1| PPE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308329067|gb|EFP17918.1| PPE family protein [Mycobacterium tuberculosis SUMu003]
 gi|308332928|gb|EFP21779.1| PPE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308360714|gb|EFP49565.1| PPE family protein [Mycobacterium tuberculosis SUMu011]
Length=226

 Score =  177 bits (449),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 100/125 (80%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MH MIPAEYISN+IYEGP ADSL AA ++LR + +S   TA+SL   L EL ENWKGSSS
Sbjct  49   MHPMIPAEYISNIIYEGPGADSLSAAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSS  108

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            + MADAA RYLDWL+KHSRQIL TA VI+ L   YEET  +VVPPATIANNREEV RLIA
Sbjct  109  DLMADAAGRYLDWLTKHSRQILETAYVIDFLAYVYEETRHKVVPPATIANNREEVHRLIA  168

Query  121  SNVAG  125
            SNVAG
Sbjct  169  SNVAG  173


>gi|289747262|ref|ZP_06506640.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289759591|ref|ZP_06518969.1| PPE family protein [Mycobacterium tuberculosis T85]
 gi|294995793|ref|ZP_06801484.1| PPE family protein [Mycobacterium tuberculosis 210]
 gi|289687790|gb|EFD55278.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289715155|gb|EFD79167.1| PPE family protein [Mycobacterium tuberculosis T85]
 gi|326905275|gb|EGE52208.1| PPE family protein [Mycobacterium tuberculosis W-148]
Length=178

 Score =  177 bits (448),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 89/125 (72%), Positives = 100/125 (80%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MH MIPAEYISN+IYEGP ADSL+ A ++LR + +S   TA+SL   L EL ENWKGSSS
Sbjct  1    MHPMIPAEYISNIIYEGPGADSLFFAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            + MADAA RYLDWL+KHSRQIL TA VI+ L   YEET  +VVPPATIANNREEV RLIA
Sbjct  61   DLMADAAGRYLDWLTKHSRQILETAYVIDFLAYVYEETRHKVVPPATIANNREEVHRLIA  120

Query  121  SNVAG  125
            SNVAG
Sbjct  121  SNVAG  125


>gi|15843022|ref|NP_338059.1| PPE family protein [Mycobacterium tuberculosis CDC1551]
 gi|57117107|ref|YP_177973.1| PPE family protein [Mycobacterium tuberculosis H37Rv]
 gi|148663293|ref|YP_001284816.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
 20 more sequence titles
 
gi|148824638|ref|YP_001289392.1| PPE family protein [Mycobacterium tuberculosis F11]
 gi|254234025|ref|ZP_04927350.1| PPE family protein [Mycobacterium tuberculosis C]
 gi|254366034|ref|ZP_04982079.1| PPE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|289449131|ref|ZP_06438875.1| PPE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289576164|ref|ZP_06456391.1| PPE family protein [Mycobacterium tuberculosis K85]
 gi|306795209|ref|ZP_07433511.1| PPE family protein [Mycobacterium tuberculosis SUMu005]
 gi|306973893|ref|ZP_07486554.1| PPE family protein [Mycobacterium tuberculosis SUMu010]
 gi|339633434|ref|YP_004725076.1| PPE family protein [Mycobacterium africanum GM041182]
 gi|18201945|sp|O06246.1|PPE59_MYCTU RecName: Full=Uncharacterized PPE family protein PPE59
 gi|13883364|gb|AAK47873.1| PPE family protein [Mycobacterium tuberculosis CDC1551]
 gi|41352788|emb|CAE55598.1| PPE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|124599554|gb|EAY58658.1| PPE family protein [Mycobacterium tuberculosis C]
 gi|134151547|gb|EBA43592.1| PPE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|148507445|gb|ABQ75254.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148723165|gb|ABR07790.1| PPE family protein [Mycobacterium tuberculosis F11]
 gi|289422089|gb|EFD19290.1| PPE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289540595|gb|EFD45173.1| PPE family protein [Mycobacterium tuberculosis K85]
 gi|308336537|gb|EFP25388.1| PPE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308356731|gb|EFP45582.1| PPE family protein [Mycobacterium tuberculosis SUMu010]
 gi|339332790|emb|CCC28513.1| PPE family protein [Mycobacterium africanum GM041182]
Length=178

 Score =  176 bits (447),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 100/125 (80%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MH MIPAEYISN+IYEGP ADSL AA ++LR + +S   TA+SL   L EL ENWKGSSS
Sbjct  1    MHPMIPAEYISNIIYEGPGADSLSAAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            + MADAA RYLDWL+KHSRQIL TA VI+ L   YEET  +VVPPATIANNREEV RLIA
Sbjct  61   DLMADAAGRYLDWLTKHSRQILETAYVIDFLAYVYEETRHKVVPPATIANNREEVHRLIA  120

Query  121  SNVAG  125
            SNVAG
Sbjct  121  SNVAG  125


>gi|253800472|ref|YP_003033473.1| PPE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289555700|ref|ZP_06444910.1| PPE family protein [Mycobacterium tuberculosis KZN 605]
 gi|297636086|ref|ZP_06953866.1| PPE family protein [Mycobacterium tuberculosis KZN 4207]
 6 more sequence titles
 
gi|297733086|ref|ZP_06962204.1| PPE family protein [Mycobacterium tuberculosis KZN R506]
 gi|313660417|ref|ZP_07817297.1| PPE family protein [Mycobacterium tuberculosis KZN V2475]
 gi|253321975|gb|ACT26578.1| PPE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289440332|gb|EFD22825.1| PPE family protein [Mycobacterium tuberculosis KZN 605]
 gi|328460204|gb|AEB05627.1| PPE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|344221265|gb|AEN01896.1| PPE family protein [Mycobacterium tuberculosis CTRI-2]
Length=178

 Score =  176 bits (446),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 100/125 (80%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MH MIPAEYISN+IYEGP ADSL AA ++LR + +S   TA+SL   L EL ENWKGSSS
Sbjct  1    MHPMIPAEYISNIIYEGPGADSLSAAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            + MADAA RYLDWL+KHSRQIL TA VI+ L   YEET  +VVPPATIANNREEV RLIA
Sbjct  61   DLMADAAGRYLDWLTKHSRQILETAYVIDFLAYVYEETRHKVVPPATIANNREEVHRLIA  120

Query  121  SNVAG  125
            SNVAG
Sbjct  121  SNVAG  125


>gi|298526912|ref|ZP_07014321.1| PPE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298496706|gb|EFI32000.1| PPE family protein [Mycobacterium tuberculosis 94_M4241A]
Length=178

 Score =  176 bits (445),  Expect = 4e-42, Method: Compositional matrix adjust.
 Identities = 88/125 (71%), Positives = 99/125 (80%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MH MIPAEYISN+IYEGP ADSL+ A ++LR + +S   TA+SL   L EL ENWKGSSS
Sbjct  1    MHPMIPAEYISNIIYEGPGADSLFFAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            + MADA  RYLDWL+KHSRQIL TA VI+ L   YEET  +VVPPATIANNREEV RLIA
Sbjct  61   DLMADAVERYLDWLTKHSRQILETAYVIDFLAYVYEETRHKVVPPATIANNREEVHRLIA  120

Query  121  SNVAG  125
            SNVAG
Sbjct  121  SNVAG  125


>gi|289445029|ref|ZP_06434773.1| PPE family protein [Mycobacterium tuberculosis T46]
 gi|289571661|ref|ZP_06451888.1| PPE family protein [Mycobacterium tuberculosis T17]
 gi|289752153|ref|ZP_06511531.1| PPE family protein [Mycobacterium tuberculosis T92]
 gi|289755561|ref|ZP_06514939.1| PPE family protein [Mycobacterium tuberculosis EAS054]
 gi|289417948|gb|EFD15188.1| PPE family protein [Mycobacterium tuberculosis T46]
 gi|289545415|gb|EFD49063.1| PPE family protein [Mycobacterium tuberculosis T17]
 gi|289692740|gb|EFD60169.1| PPE family protein [Mycobacterium tuberculosis T92]
 gi|289696148|gb|EFD63577.1| PPE family protein [Mycobacterium tuberculosis EAS054]
Length=178

 Score =  174 bits (442),  Expect = 6e-42, Method: Compositional matrix adjust.
 Identities = 89/125 (72%), Positives = 100/125 (80%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MH MIPAEYISN+IYEGP ADSL AA ++LR + +S   TA+SL   L EL ENWKGSSS
Sbjct  1    MHPMIPAEYISNIIYEGPGADSLSAAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            + +ADAA RYLDWL+KHSRQIL TA VI+ L   YEET  +VVPPATIANNREEV RLIA
Sbjct  61   DLLADAAGRYLDWLTKHSRQILETAYVIDFLAYVYEETRHKVVPPATIANNREEVHRLIA  120

Query  121  SNVAG  125
            SNVAG
Sbjct  121  SNVAG  125


>gi|167968681|ref|ZP_02550958.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
Length=175

 Score =  172 bits (437),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 88/122 (73%), Positives = 98/122 (81%), Gaps = 0/122 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWM  63
            MIPAEYISN+IYEGP ADSL AA ++LR + +S   TA+SL   L EL ENWKGSSS+ M
Sbjct  1    MIPAEYISNIIYEGPGADSLSAAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSSDLM  60

Query  64   ADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNV  123
            ADAA RYLDWL+KHSRQIL TA VI+ L   YEET  +VVPPATIANNREEV RLIASNV
Sbjct  61   ADAAGRYLDWLTKHSRQILETAYVIDFLAYVYEETRHKVVPPATIANNREEVHRLIASNV  120

Query  124  AG  125
            AG
Sbjct  121  AG  122


>gi|289752144|ref|ZP_06511522.1| PPE family protein [Mycobacterium tuberculosis T92]
 gi|289692731|gb|EFD60160.1| PPE family protein [Mycobacterium tuberculosis T92]
Length=176

 Score =  172 bits (436),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 89/125 (72%), Positives = 100/125 (80%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MH MIPAEYISN+IYEGP ADSL AA ++LR + +S   TA+SL   L EL ENWKGSSS
Sbjct  1    MHPMIPAEYISNIIYEGPGADSLSAAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            + +ADAA RYLDWL+KHSRQIL TA VI+ L   YEET  +VVPPATIANNREE RRLIA
Sbjct  61   DLLADAAGRYLDWLTKHSRQILETAYVIDFLAYVYEETRHKVVPPATIANNREERRRLIA  120

Query  121  SNVAG  125
            SNVAG
Sbjct  121  SNVAG  125


>gi|289763608|ref|ZP_06522986.1| PPE family protein [Mycobacterium tuberculosis GM 1503]
 gi|289711114|gb|EFD75130.1| PPE family protein [Mycobacterium tuberculosis GM 1503]
Length=178

 Score =  172 bits (436),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 88/125 (71%), Positives = 98/125 (79%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MH MIPAEYISN+IYEGP ADSL AA ++LR + +S   TA+SL   L EL ENWKGSSS
Sbjct  1    MHPMIPAEYISNIIYEGPGADSLSAAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            + MADA  RYL WL+KHSRQIL TA VI+ L   YEET  +VVPPATIANNREEV RLIA
Sbjct  61   DLMADAVERYLQWLTKHSRQILETAYVIDFLAYVYEETRHKVVPPATIANNREEVHRLIA  120

Query  121  SNVAG  125
            SNVAG
Sbjct  121  SNVAG  125


>gi|289444917|ref|ZP_06434661.1| PPE family protein [Mycobacterium tuberculosis T46]
 gi|289571650|ref|ZP_06451877.1| PPE family protein [Mycobacterium tuberculosis T17]
 gi|289755554|ref|ZP_06514932.1| PPE family protein [Mycobacterium tuberculosis EAS054]
 gi|289417836|gb|EFD15076.1| PPE family protein [Mycobacterium tuberculosis T46]
 gi|289545404|gb|EFD49052.1| PPE family protein [Mycobacterium tuberculosis T17]
 gi|289696141|gb|EFD63570.1| PPE family protein [Mycobacterium tuberculosis EAS054]
Length=176

 Score =  172 bits (436),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 89/125 (72%), Positives = 100/125 (80%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MH MIPAEYISN+IYEGP ADSL AA ++LR + +S   TA+SL   L EL ENWKGSSS
Sbjct  1    MHPMIPAEYISNIIYEGPGADSLSAAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            + +ADAA RYLDWL+KHSRQIL TA VI+ L   YEET  +VVPPATIANNREE RRLIA
Sbjct  61   DLLADAAGRYLDWLTKHSRQILETAYVIDFLAYVYEETRHKVVPPATIANNREERRRLIA  120

Query  121  SNVAG  125
            SNVAG
Sbjct  121  SNVAG  125


>gi|254552530|ref|ZP_05142977.1| PPE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=175

 Score =  169 bits (427),  Expect = 4e-40, Method: Compositional matrix adjust.
 Identities = 86/122 (71%), Positives = 96/122 (79%), Gaps = 0/122 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWM  63
            MIPAEYISN+IYEGP ADSL AA ++LR + +S   TA+SL   L EL ENWKGSSS+ M
Sbjct  1    MIPAEYISNIIYEGPGADSLSAAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSSDLM  60

Query  64   ADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNV  123
            ADA  RYL WL+KHSRQIL TA VI+ L   YEET  +VVPPATIANNREEV RLIASNV
Sbjct  61   ADAVERYLQWLTKHSRQILETAYVIDFLAYVYEETRHKVVPPATIANNREEVHRLIASNV  120

Query  124  AG  125
            AG
Sbjct  121  AG  122


>gi|148824631|ref|YP_001289385.1| hypothetical protein TBFG_13458 [Mycobacterium tuberculosis F11]
 gi|148723158|gb|ABR07783.1| hypothetical protein TBFG_13458 [Mycobacterium tuberculosis F11]
Length=176

 Score =  152 bits (385),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 81/125 (65%), Positives = 91/125 (73%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MH MIPAEYISN+IYEGP ADSL AA ++LR + +S   TA+SL   L EL ENWKGSSS
Sbjct  1    MHPMIPAEYISNIIYEGPGADSLSAAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            + MADA  RYL WLSKHS Q+   A VI  L  AY +T  +VVPP  IA NREE RRLIA
Sbjct  61   DLMADAVERYLQWLSKHSSQLKHAAWVINGLANAYNDTRRKVVPPEEIAANREERRRLIA  120

Query  121  SNVAG  125
            SNVAG
Sbjct  121  SNVAG  125


>gi|31794606|ref|NP_857099.1| PPE family protein [Mycobacterium bovis AF2122/97]
 gi|121639350|ref|YP_979574.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224991846|ref|YP_002646535.1| PPE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31620203|emb|CAD95646.1| PPE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121494998|emb|CAL73484.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224774961|dbj|BAH27767.1| PPE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341603371|emb|CCC66052.1| PPE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=178

 Score =  150 bits (379),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 94/125 (76%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MH MIPAEYISN+IYEGP ADSL+ A  +LR+LA SV TTAESL   LDEL ENWKGSSS
Sbjct  1    MHPMIPAEYISNIIYEGPGADSLFFASGQLRELAYSVETTAESLEDELDELDENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            + +ADA  RYL WLSKHS Q+   A VI  L  AY +T  +VVPP  IA NREEV RLIA
Sbjct  61   DLLADAVERYLQWLSKHSSQLKHAAWVINGLANAYNDTRRKVVPPEEIAANREEVHRLIA  120

Query  121  SNVAG  125
            SNVAG
Sbjct  121  SNVAG  125


>gi|57117105|ref|YP_177971.1| PPE family protein [Mycobacterium tuberculosis H37Rv]
 gi|148663289|ref|YP_001284812.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
 gi|306973883|ref|ZP_07486544.1| putative PPE family protein [Mycobacterium tuberculosis SUMu010]
 6 more sequence titles
 
gi|307081595|ref|ZP_07490765.1| putative PPE family protein [Mycobacterium tuberculosis SUMu011]
 gi|2496465|sp|Q50703.1|PPE57_MYCTU RecName: Full=Uncharacterized PPE family protein PPE57
 gi|41352786|emb|CAE55596.1| PPE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148507441|gb|ABQ75250.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
 gi|308356769|gb|EFP45620.1| putative PPE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308360719|gb|EFP49570.1| putative PPE family protein [Mycobacterium tuberculosis SUMu011]
Length=176

 Score =  147 bits (372),  Expect = 8e-34, Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 94/125 (76%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MH MIPAEYISN+IYEGP ADSL+ A  +LR+LA SV TTAESL   LDEL ENWKGSSS
Sbjct  1    MHPMIPAEYISNIIYEGPGADSLFFASGQLRELAYSVETTAESLEDELDELDENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            + +ADA  RYL WLSKHS Q+   A VI  L  AY +T  +VVPP  IA NREE RRLIA
Sbjct  61   DLLADAVERYLQWLSKHSSQLKHAAWVINGLANAYNDTRRKVVPPEEIAANREERRRLIA  120

Query  121  SNVAG  125
            SNVAG
Sbjct  121  SNVAG  125


>gi|289449124|ref|ZP_06438868.1| PPE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289576157|ref|ZP_06456384.1| PPE family protein [Mycobacterium tuberculosis K85]
 gi|298526907|ref|ZP_07014316.1| PPE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|339633430|ref|YP_004725072.1| PPE family protein [Mycobacterium africanum GM041182]
 gi|289422082|gb|EFD19283.1| PPE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289540588|gb|EFD45166.1| PPE family protein [Mycobacterium tuberculosis K85]
 gi|298496701|gb|EFI31995.1| PPE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|339332786|emb|CCC28508.1| PPE family protein [Mycobacterium africanum GM041182]
Length=176

 Score =  147 bits (372),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 94/125 (76%), Gaps = 0/125 (0%)

Query  1    MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
            MH MIPAEYISN+IYEGP ADSL+ A  +LR+LA SV TTAESL   LDEL ENWKGSSS
Sbjct  1    MHPMIPAEYISNIIYEGPGADSLFFASGQLRELAYSVETTAESLEDELDELDENWKGSSS  60

Query  61   EWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIA  120
            + +ADA  RYL WLSKHS Q+   A VI  L  AY +T  +VVPP  IA NREE RRLIA
Sbjct  61   DLLADAVERYLQWLSKHSSQLKHAAWVINGLANAYNDTRRKVVPPEEIAANREERRRLIA  120

Query  121  SNVAG  125
            SNVAG
Sbjct  121  SNVAG  125


>gi|289571657|ref|ZP_06451884.1| PPE family protein [Mycobacterium tuberculosis T17]
 gi|298526911|ref|ZP_07014320.1| ppe family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|289545411|gb|EFD49059.1| PPE family protein [Mycobacterium tuberculosis T17]
 gi|298496705|gb|EFI31999.1| ppe family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|326905273|gb|EGE52206.1| PPE family protein [Mycobacterium tuberculosis W-148]
Length=176

 Score =  138 bits (348),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 71/122 (59%), Positives = 87/122 (72%), Gaps = 0/122 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWM  63
            M PA  IS  +Y GP ADS+ AA Q+LR+LA S  TTA+SLN TL +L + W G SS +M
Sbjct  1    MTPAHQISYQMYAGPGADSMRAASQQLRELAFSADTTADSLNDTLFDLDDTWIGGSSAFM  60

Query  64   ADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNV  123
             DAALRYL WLSKHS+++ +TA  I  L   YE+   RVVPPA I +NREEVRRLIAS++
Sbjct  61   TDAALRYLKWLSKHSKRLWQTANTIHHLANTYEDIRQRVVPPAAIEDNREEVRRLIASDI  120

Query  124  AG  125
             G
Sbjct  121  TG  122


>gi|148824635|ref|YP_001289389.1| PPE family protein [Mycobacterium tuberculosis F11]
 gi|289445026|ref|ZP_06434770.1| PPE family protein [Mycobacterium tuberculosis T46]
 gi|289449128|ref|ZP_06438872.1| PPE family protein [Mycobacterium tuberculosis CPHL_A]
 20 more sequence titles
 
gi|289576161|ref|ZP_06456388.1| PPE family protein [Mycobacterium tuberculosis K85]
 gi|289747259|ref|ZP_06506637.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289752149|ref|ZP_06511527.1| PPE family protein [Mycobacterium tuberculosis T92]
 gi|289755559|ref|ZP_06514937.1| PPE family protein [Mycobacterium tuberculosis EAS054]
 gi|289759590|ref|ZP_06518968.1| PPE family protein [Mycobacterium tuberculosis T85]
 gi|306777771|ref|ZP_07416108.1| putative PPE family protein [Mycobacterium tuberculosis SUMu001]
 gi|306973890|ref|ZP_07486551.1| putative PPE family protein [Mycobacterium tuberculosis SUMu010]
 gi|307081602|ref|ZP_07490772.1| putative PPE family protein [Mycobacterium tuberculosis SUMu011]
 gi|148723162|gb|ABR07787.1| PPE family protein [Mycobacterium tuberculosis F11]
 gi|289417945|gb|EFD15185.1| PPE family protein [Mycobacterium tuberculosis T46]
 gi|289422086|gb|EFD19287.1| PPE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289540592|gb|EFD45170.1| PPE family protein [Mycobacterium tuberculosis K85]
 gi|289687787|gb|EFD55275.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289692736|gb|EFD60165.1| PPE family protein [Mycobacterium tuberculosis T92]
 gi|289696146|gb|EFD63575.1| PPE family protein [Mycobacterium tuberculosis EAS054]
 gi|289715154|gb|EFD79166.1| PPE family protein [Mycobacterium tuberculosis T85]
 gi|308213904|gb|EFO73303.1| putative PPE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308356774|gb|EFP45625.1| putative PPE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308360723|gb|EFP49574.1| putative PPE family protein [Mycobacterium tuberculosis SUMu011]
 gi|339299854|gb|AEJ51964.1| PPE family protein [Mycobacterium tuberculosis CCDC5180]
Length=180

 Score =  137 bits (345),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 70/122 (58%), Positives = 87/122 (72%), Gaps = 0/122 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWM  63
            + PA  IS  +Y GP ADS+ AA Q+LR+LA S  TTA+SLN TL +L + W G SS +M
Sbjct  5    LTPAHQISYQMYAGPGADSMRAASQQLRELAFSADTTADSLNDTLFDLDDTWIGGSSAFM  64

Query  64   ADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNV  123
             DAALRYL WLSKHS+++ +TA  I  L   YE+   RVVPPA I +NREEVRRLIAS++
Sbjct  65   TDAALRYLKWLSKHSKRLWQTANTIHHLANTYEDIRQRVVPPAAIEDNREEVRRLIASDI  124

Query  124  AG  125
             G
Sbjct  125  TG  126


>gi|339299856|gb|AEJ51966.1| PPE family protein [Mycobacterium tuberculosis CCDC5180]
Length=156

 Score =  136 bits (342),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 69/103 (67%), Positives = 80/103 (78%), Gaps = 0/103 (0%)

Query  23   LYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWMADAALRYLDWLSKHSRQIL  82
            ++ A ++LR + +S   TA+SL   L EL ENWKGSSS+ MADAA RYLDWL+KHSRQIL
Sbjct  1    MFFAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSSDLMADAAGRYLDWLTKHSRQIL  60

Query  83   RTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVAG  125
             TA VI+ L   YEET  +VVPPATIANNREEV RLIASNVAG
Sbjct  61   ETAYVIDFLAYVYEETRHKVVPPATIANNREEVHRLIASNVAG  103


>gi|323717911|gb|EGB27100.1| PPE family protein [Mycobacterium tuberculosis CDC1551A]
Length=156

 Score =  136 bits (342),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 70/101 (70%), Positives = 79/101 (79%), Gaps = 0/101 (0%)

Query  25   AADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWMADAALRYLDWLSKHSRQILRT  84
            AA ++LR + +S   TA+SL   L EL ENWKGSSS+ MADAA RYLDWL+KHSRQIL T
Sbjct  3    AAAEQLRLMYNSANMTAKSLTDRLGELQENWKGSSSDLMADAAGRYLDWLTKHSRQILET  62

Query  85   ARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVAG  125
            A VI+ L   YEET  +VVPPATIANNREEV RLIASNVAG
Sbjct  63   AYVIDFLAYVYEETRHKVVPPATIANNREEVHRLIASNVAG  103


>gi|294995796|ref|ZP_06801487.1| PPE family protein [Mycobacterium tuberculosis 210]
 gi|339296252|gb|AEJ48363.1| PPE family protein [Mycobacterium tuberculosis CCDC5079]
Length=157

 Score =  118 bits (295),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 60/101 (60%), Positives = 74/101 (74%), Gaps = 0/101 (0%)

Query  25   AADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWMADAALRYLDWLSKHSRQILRT  84
            AA Q+LR+LA S  TTA+SLN TL +L + W G SS +M DAALRYL WLSKHS+++ +T
Sbjct  3    AASQQLRELAFSADTTADSLNDTLFDLDDTWIGGSSAFMTDAALRYLKWLSKHSKRLWQT  62

Query  85   ARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVAG  125
            A  I  L   YE+   RVVPPA I +NREEVRRLIAS++ G
Sbjct  63   ANTIHHLANTYEDIRQRVVPPAAIEDNREEVRRLIASDITG  103


>gi|306777764|ref|ZP_07416101.1| putative PPE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308213899|gb|EFO73298.1| putative PPE family protein [Mycobacterium tuberculosis SUMu001]
Length=153

 Score =  105 bits (263),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 65/102 (64%), Positives = 73/102 (72%), Gaps = 0/102 (0%)

Query  24   YAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWMADAALRYLDWLSKHSRQILR  83
            + A  +LR+LA SV TTAESL   LDEL ENWKGSSS+ +ADA  RYL WLSKHS Q+  
Sbjct  1    FFASGQLRELAYSVETTAESLEDELDELDENWKGSSSDLLADAVERYLQWLSKHSSQLKH  60

Query  84   TARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVAG  125
             A VI  L  AY +T  +VVPP  IA NREE RRLIASNVAG
Sbjct  61   AAWVINGLANAYNDTRRKVVPPEEIAANREERRRLIASNVAG  102


>gi|289747254|ref|ZP_06506632.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289687782|gb|EFD55270.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
Length=86

 Score = 95.9 bits (237),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 54/76 (72%), Positives = 60/76 (79%), Gaps = 0/76 (0%)

Query  1   MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSS  60
           MH MIPAEYISN+IYEGP ADSL+ A  +LR+LA SV TTAESL   LDEL ENWKGSSS
Sbjct  1   MHPMIPAEYISNIIYEGPGADSLFFASGQLRELAYSVETTAESLEDELDELDENWKGSSS  60

Query  61  EWMADAALRYLDWLSK  76
           + +ADA  RYL WLS 
Sbjct  61  DLLADAVERYLQWLSN  76


>gi|183980225|ref|YP_001848516.1| PPE family protein, PPE51_2 [Mycobacterium marinum M]
 gi|183173551|gb|ACC38661.1| PPE family protein, PPE51_2 [Mycobacterium marinum M]
Length=381

 Score = 76.3 bits (186),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 45/123 (37%), Positives = 64/123 (53%), Gaps = 1/123 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHE-NWKGSSSEW  62
            M+P E  S ++Y GP A SL AA     +LA  + TTA++  + L  L    W G +SE 
Sbjct  5    MLPPEVNSGLMYTGPGAGSLLAAANSWDELAIELGTTAQTYESVLSGLTSMYWAGPASES  64

Query  63   MADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASN  122
            MA  A  Y+ WL   + Q  +TA    +  MA+E+     VPP  I  NR ++  L+A+N
Sbjct  65   MAAKAAPYVWWLHSTAEQTQQTATQCRAAAMAFEQAYAMTVPPPVILANRMQLMSLVATN  124

Query  123  VAG  125
              G
Sbjct  125  FFG  127


>gi|167968687|ref|ZP_02550964.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
Length=125

 Score = 75.5 bits (184),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 40/63 (64%), Positives = 44/63 (70%), Gaps = 0/63 (0%)

Query  63   MADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASN  122
            +ADA  RYL WLSKHS Q+   A VI  L  AY +T  +VVPP  IA NREE RRLIASN
Sbjct  12   LADAVERYLQWLSKHSSQLKHAAWVINGLANAYNDTRRKVVPPEEIAANREERRRLIASN  71

Query  123  VAG  125
            VAG
Sbjct  72   VAG  74


>gi|342861517|ref|ZP_08718164.1| PPE family protein [Mycobacterium colombiense CECT 3035]
 gi|342131006|gb|EGT84295.1| PPE family protein [Mycobacterium colombiense CECT 3035]
Length=389

 Score = 75.5 bits (184),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 44/122 (37%), Positives = 63/122 (52%), Gaps = 0/122 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWM  63
            ++P E IS +I+ GP A S   A    + L+  +  +A S    L EL   W G SS  M
Sbjct  5    ILPPEVISALIHAGPGAWSWIEAAGMWQTLSAELELSANSYTAELSELATTWHGPSSMAM  64

Query  64   ADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNV  123
            A A   YLDWL   ++Q  + A  +E +  A+E T   VV P+ +A NR  +  L+A+N 
Sbjct  65   AQAFEPYLDWLRVTAQQCQQVATSVEVMATAFESTHWTVVHPSLVAANRARLAMLVATNF  124

Query  124  AG  125
             G
Sbjct  125  FG  126


>gi|306807071|ref|ZP_07443739.1| putative PPE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308346531|gb|EFP35382.1| putative PPE family protein [Mycobacterium tuberculosis SUMu007]
Length=200

 Score = 71.2 bits (173),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 49/135 (37%), Positives = 68/135 (51%), Gaps = 1/135 (0%)

Query  5    IPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELH-ENWKGSSSEWM  63
            +P E  S  +Y GP + SL AA Q    +A  + + A +  + +  L   +W GSS+  M
Sbjct  7    LPPEINSARMYAGPGSASLVAAAQMWDSVASDLFSAASAFQSVVWGLTVGSWIGSSAGLM  66

Query  64   ADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNV  123
              AA  Y+ W+S  + Q   TA  +     AYE      VPP  IA NR E+  LIA+N+
Sbjct  67   VAAASPYVAWMSVTAGQAELTAAQVRVAAAAYETAYGLTVPPPVIAENRAELMILIATNL  126

Query  124  AGGKHSSNRRPRGTI  138
             G KH  +R  RG I
Sbjct  127  LGQKHPGDRGQRGRI  141


>gi|342861033|ref|ZP_08717682.1| PPE family protein [Mycobacterium colombiense CECT 3035]
 gi|342131477|gb|EGT84747.1| PPE family protein [Mycobacterium colombiense CECT 3035]
Length=376

 Score = 70.5 bits (171),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 41/112 (37%), Positives = 59/112 (53%), Gaps = 0/112 (0%)

Query  14   IYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWMADAALRYLDW  73
            +Y GP   SL AA      L+  + +TAES  + L  L   W+G ++E MA +A RY+ W
Sbjct  1    MYTGPGLASLLAAAGSWDALSAELASTAESYESVLVGLGLQWRGPAAESMAYSAARYMGW  60

Query  74   LSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVAG  125
            L   + Q  +TA    +   AYE+     VPP  IA NR  +  L+A+N+ G
Sbjct  61   LEATAEQTKQTAMQARTAAAAYEQAYSMTVPPPVIAANRTLLASLVATNIVG  112


>gi|296167733|ref|ZP_06849950.1| PPE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897076|gb|EFG76691.1| PPE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=406

 Score = 70.5 bits (171),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 42/121 (35%), Positives = 61/121 (51%), Gaps = 1/121 (0%)

Query  6    PAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELH-ENWKGSSSEWMA  64
            P EY S  +Y GP  ++L AA      LA  + +TA   +  +  L  E W G +S  MA
Sbjct  8    PPEYNSARMYTGPGPEALTAAASAWNGLAAELNSTALGYDKVITALSGEEWLGPASASMA  67

Query  65   DAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVA  124
             A   Y+ W+   + Q  +TA  + +   AYE  L   VPP  +A NR +  +L+A+NV 
Sbjct  68   QAVAPYVAWMRTTAAQAEQTANQMHAAATAYETALAATVPPPLVAANRAQTAQLLATNVL  127

Query  125  G  125
            G
Sbjct  128  G  128


>gi|240171260|ref|ZP_04749919.1| PPE family protein [Mycobacterium kansasii ATCC 12478]
Length=472

 Score = 68.6 bits (166),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 43/122 (36%), Positives = 65/122 (54%), Gaps = 0/122 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWM  63
            ++P E  S  +Y GP +  +  A +    LA  + +TA S ++ +  L   W+G SS  M
Sbjct  5    LLPPEINSGRMYAGPGSGPMLTAAEAWDALAAQLYSTAASYSSVITALTATWQGPSSVSM  64

Query  64   ADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNV  123
            A AA  Y+ W S  + Q  +TA    +  +AYE T   +VPP  IA NR E+  L+A+N+
Sbjct  65   ATAAAPYMAWTSATAAQSEQTAAQARAAAVAYETTFAAMVPPPVIAANRSELASLVATNI  124

Query  124  AG  125
             G
Sbjct  125  FG  126


>gi|118466613|ref|YP_881225.1| PPE family protein [Mycobacterium avium 104]
 gi|118167900|gb|ABK68797.1| ppe family protein [Mycobacterium avium 104]
Length=446

 Score = 67.8 bits (164),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 39/127 (31%), Positives = 68/127 (54%), Gaps = 2/127 (1%)

Query  1    MHL-MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDEL-HENWKGS  58
            MH  ++P E  S  +Y GP + S+ AA     +LA+ +  TA ++ + +  L  E W+G 
Sbjct  1    MHFAVLPPEVNSGRMYSGPGSGSMLAAASAWDELANELHVTAANIESVISGLTSEPWQGP  60

Query  59   SSEWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRL  118
            S+  +  AA   ++WL+  + Q  +T   +++   AYE      VPP+ +A NR  +  L
Sbjct  61   SAAAVTAAAATQVEWLTATAEQAAQTGAQLKAAATAYESAYAMTVPPSVVAANRSRLASL  120

Query  119  IASNVAG  125
            +A+N+ G
Sbjct  121  VATNLLG  127


>gi|342859619|ref|ZP_08716272.1| PPE family protein [Mycobacterium colombiense CECT 3035]
 gi|342132751|gb|EGT85971.1| PPE family protein [Mycobacterium colombiense CECT 3035]
Length=458

 Score = 67.0 bits (162),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 39/123 (32%), Positives = 58/123 (48%), Gaps = 1/123 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHEN-WKGSSSEW  62
            ++P E  S  +Y GP +  + AA     ++A +++TTA S    +  L    W G SS  
Sbjct  5    VLPPEVNSARMYAGPGSGPMLAAAMAWDEVAAALQTTANSYQAEITALTSGPWVGPSSAA  64

Query  63   MADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASN  122
            M  A   YL+W+     Q   TA    +   AYE      VPP  +  NR ++  L+A+N
Sbjct  65   MVAAITPYLEWMRTAGAQAEETANQARTAAFAYETAFAETVPPPVVTANRTQLAALVATN  124

Query  123  VAG  125
            V G
Sbjct  125  VLG  127


>gi|333992835|ref|YP_004525449.1| PPE family protein PPE51_2 [Mycobacterium sp. JDM601]
 gi|333488803|gb|AEF38195.1| PPE family protein PPE51_2 [Mycobacterium sp. JDM601]
Length=428

 Score = 67.0 bits (162),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 42/121 (35%), Positives = 60/121 (50%), Gaps = 0/121 (0%)

Query  5    IPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWMA  64
            IP E  S+++Y GP A+SL  A    + LA  ++    S    L  L  +W G SS  M 
Sbjct  7    IPPEVTSSLLYAGPGAESLLTAATAWQGLATELQAVTASYRAVLATLTVDWIGPSSAAMV  66

Query  65   DAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVA  124
             AA  ++DW+S  + Q  + +    +   A+E  L  VVPP  IA NR     L+A+N  
Sbjct  67   AAATPFVDWVSGAAAQATQASAQAGAAASAFEVALAAVVPPPVIAANRSLREALLATNTL  126

Query  125  G  125
            G
Sbjct  127  G  127


>gi|308380003|ref|ZP_07669094.1| putative PPE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308362979|gb|EFP51830.1| putative PPE family protein [Mycobacterium tuberculosis SUMu011]
Length=175

 Score = 66.2 bits (160),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 53/148 (36%), Positives = 72/148 (49%), Gaps = 4/148 (2%)

Query  5    IPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELH-ENWKGSSSEWM  63
            +P E  S  +Y GP + SL AA +    +A  + + A +  + +  L   +W GSS+  M
Sbjct  7    LPPEINSARMYAGPGSASLVAAAKMWDSVASDLFSAASAFQSVVWGLTVGSWIGSSAGLM  66

Query  64   ADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNV  123
              AA  Y+ W+S  + Q   TA  +     AYE      VPP  IA NR E+  LIA+N+
Sbjct  67   VAAASPYVAWMSVTAGQAELTAAQVRVAAAAYETAYGLTVPPPVIAENRAELMILIATNL  126

Query  124  AGGKHSSNRRPRGTIRAVPGRKYPSNGP  151
             G KH   RR R T R   GR  P   P
Sbjct  127  LGQKHP--RRSRST-RPNTGRCGPKTPP  151


>gi|183981917|ref|YP_001850208.1| PPE family protein [Mycobacterium marinum M]
 gi|183175243|gb|ACC40353.1| PPE family protein [Mycobacterium marinum M]
Length=398

 Score = 66.2 bits (160),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 48/123 (40%), Positives = 62/123 (51%), Gaps = 5/123 (4%)

Query  6    PAEYISNVIYEGPRADSLYAADQRLRQLA---DSVRTTAESLNTTLDELHENWKGSSSEW  62
            P E  S ++Y GP + S+ AA     ++A   DS  T+ ESL   L E  E W G +S  
Sbjct  7    PPEVTSALMYMGPGSTSMTAAASVWNRVAAELDSAATSYESLVIGLVE--EGWLGPASVA  64

Query  63   MADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASN  122
            MADA   Y+ W+   + Q   TA    +   AYE     VVPP  I+ NR  +  LIASN
Sbjct  65   MADAVAPYVVWMRATAAQAEHTAMQARASAAAYETAFGAVVPPPLISANRVRLAELIASN  124

Query  123  VAG  125
            V G
Sbjct  125  VFG  127


>gi|240169713|ref|ZP_04748372.1| PPE family protein [Mycobacterium kansasii ATCC 12478]
Length=445

 Score = 66.2 bits (160),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 43/122 (36%), Positives = 63/122 (52%), Gaps = 0/122 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWM  63
            M+P E  S  +Y GP    + AA      LA  + + A++  + + +L   W G +S  M
Sbjct  5    MLPPEVNSGRMYAGPGPGPMLAAAAAWDGLASDLDSAADACQSVVSQLTSGWLGPASTSM  64

Query  64   ADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNV  123
            A AA  YL WL   + Q  +TAR   +   AYEE     VPP+ IA NR ++  L+A+N+
Sbjct  65   ATAASGYLAWLRTSAGQAEQTARQAMAAATAYEEAFATTVPPSVIAANRAQLAALMATNL  124

Query  124  AG  125
             G
Sbjct  125  LG  126


>gi|254820680|ref|ZP_05225681.1| PPE family protein [Mycobacterium intracellulare ATCC 13950]
 gi|212596684|gb|ACJ35598.1| PPE34 [Mycobacterium intracellulare ATCC 13950]
Length=382

 Score = 65.9 bits (159),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 43/122 (36%), Positives = 64/122 (53%), Gaps = 0/122 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWM  63
            ++P E IS +I+ GP A SL  A    ++L+  +  +A S    L  L   W G SS  M
Sbjct  5    ILPPEIISALIHSGPGAWSLIEAAGFWQELSAELEQSASSYTAELSWLSTTWHGPSSMAM  64

Query  64   ADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNV  123
            A A   YL WL   ++Q  +TA  ++ +  A+E T   VV P+ +A NR  +  L+A+N 
Sbjct  65   AQALEPYLAWLRLTAQQCQQTAASVQVVAAAFEWTHWTVVHPSLVAANRARLAMLLATNF  124

Query  124  AG  125
             G
Sbjct  125  FG  126


>gi|333989927|ref|YP_004522541.1| PPE family protein PPE51_2 [Mycobacterium sp. JDM601]
 gi|333485895|gb|AEF35287.1| PPE family protein PPE51_2 [Mycobacterium sp. JDM601]
Length=373

 Score = 64.3 bits (155),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 41/123 (34%), Positives = 62/123 (51%), Gaps = 1/123 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELH-ENWKGSSSEW  62
            ++P E IS  +Y GP +  L A+      L+  +   A   +TTL  L  E W G+SS+ 
Sbjct  6    ILPPEVISTQMYTGPGSGPLLASAAAWDALSGQLNAFALGYSTTLTGLQDEGWTGASSQA  65

Query  63   MADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASN  122
            M  AA  Y+ W+S+ + Q    A    +   AYE      VPPA +  NR ++  L+A+N
Sbjct  66   MLAAAAPYIAWVSQTATQAEHAATQSRAAAAAYESARAATVPPAVVTTNRTQLANLVATN  125

Query  123  VAG  125
            + G
Sbjct  126  IFG  128


>gi|336458159|gb|EGO37142.1| PPE-repeat containing protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=445

 Score = 64.3 bits (155),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 39/127 (31%), Positives = 68/127 (54%), Gaps = 3/127 (2%)

Query  1    MHL-MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDEL-HENWKGS  58
            MH  ++P E  S  +Y GP + S+ AA     +LA+ +  TA ++ + +  L  E W+G 
Sbjct  1    MHFAVLPPEVNSGRMYSGPGSGSMLAASA-WDELANELHVTAANIESVISGLTSEPWQGP  59

Query  59   SSEWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRL  118
            S+  +  AA   ++WL+  + Q  +T   +++   AYE      VPP+ +A NR  +  L
Sbjct  60   SAAAVTAAAATQVEWLTATAEQAAQTGAQLKAAATAYESAYAMTVPPSVVAANRSRLASL  119

Query  119  IASNVAG  125
            +A+N+ G
Sbjct  120  VATNLLG  126


>gi|340627118|ref|YP_004745570.1| PPE family protein [Mycobacterium canettii CIPT 140010059]
 gi|340005308|emb|CCC44464.1| PPE family protein [Mycobacterium canettii CIPT 140010059]
Length=243

 Score = 62.0 bits (149),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 41/121 (34%), Positives = 60/121 (50%), Gaps = 0/121 (0%)

Query  5    IPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWMA  64
            +P E  S  IY GP +  + AA Q    LA  +  T   L + LD L E+++G SS+ + 
Sbjct  7    LPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSSQALI  66

Query  65   DAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVA  124
               L Y+ WL+  +    RTA  + +   AYE+    +VPPA +  NR +   L A N  
Sbjct  67   QQTLPYVQWLTTTAEHAHRTATQLTAAANAYEQARAAMVPPAMVRANRVQTIALKAFNWF  126

Query  125  G  125
            G
Sbjct  127  G  127


>gi|308232493|ref|ZP_07416221.2| PPE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308369156|ref|ZP_07416751.2| PPE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308371381|ref|ZP_07424759.2| PPE family protein [Mycobacterium tuberculosis SUMu003]
 9 more sequence titles
 
gi|308372670|ref|ZP_07429427.2| PPE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308373943|ref|ZP_07434213.2| PPE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308378363|ref|ZP_07482323.2| PPE family protein [Mycobacterium tuberculosis SUMu009]
 gi|308213759|gb|EFO73158.1| PPE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308328514|gb|EFP17365.1| PPE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308328927|gb|EFP17778.1| PPE family protein [Mycobacterium tuberculosis SUMu003]
 gi|308340316|gb|EFP29167.1| PPE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308343581|gb|EFP32432.1| PPE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308352832|gb|EFP41683.1| PPE family protein [Mycobacterium tuberculosis SUMu009]
Length=404

 Score = 61.6 bits (148),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 42/123 (35%), Positives = 63/123 (52%), Gaps = 1/123 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHE-NWKGSSSEW  62
            M+P E  S  +Y GP A SL+AA     Q++  +++ AE+  + +  L    W G SS  
Sbjct  5    MLPPEVNSTRMYSGPGAGSLWAAAAAWDQVSAELQSAAETYRSVIASLTGWQWLGPSSVR  64

Query  63   MADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASN  122
            M  A   Y++WL+  + Q  +TA  I +    +E+     VPP  I  NR +V  LIA+N
Sbjct  65   MGAAVTPYVEWLTTTAAQARQTATQITAAATGFEQAFAMTVPPPAIMANRAQVLSLIATN  124

Query  123  VAG  125
              G
Sbjct  125  FFG  127


>gi|289440961|ref|ZP_06430705.1| PPE family protein [Mycobacterium tuberculosis T46]
 gi|289571773|ref|ZP_06452000.1| PPE family protein [Mycobacterium tuberculosis T17]
 gi|289752245|ref|ZP_06511623.1| PPE family protein [Mycobacterium tuberculosis T92]
 gi|289413880|gb|EFD11120.1| PPE family protein [Mycobacterium tuberculosis T46]
 gi|289545527|gb|EFD49175.1| PPE family protein [Mycobacterium tuberculosis T17]
 gi|289692832|gb|EFD60261.1| PPE family protein [Mycobacterium tuberculosis T92]
Length=406

 Score = 61.6 bits (148),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 42/123 (35%), Positives = 63/123 (52%), Gaps = 1/123 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHE-NWKGSSSEW  62
            M+P E  S  +Y GP A SL+AA     Q++  +++ AE+  + +  L    W G SS  
Sbjct  7    MLPPEVNSTRMYSGPGAGSLWAAAAAWDQVSAELQSAAETYRSVIASLTGWQWLGPSSVR  66

Query  63   MADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASN  122
            M  A   Y++WL+  + Q  +TA  I +    +E+     VPP  I  NR +V  LIA+N
Sbjct  67   MGAAVTPYVEWLTTTAAQARQTATQITAAATGFEQAFAMTVPPPAIMANRAQVLSLIATN  126

Query  123  VAG  125
              G
Sbjct  127  FFG  129


>gi|31794708|ref|NP_857201.1| PPE family protein [Mycobacterium bovis AF2122/97]
 gi|57117120|ref|YP_177984.1| PPE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121639451|ref|YP_979675.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 50 more sequence titles
 
gi|148663395|ref|YP_001284918.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148824738|ref|YP_001289492.1| PPE family protein [Mycobacterium tuberculosis F11]
 gi|167969146|ref|ZP_02551423.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
 gi|224991948|ref|YP_002646637.1| PPE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800573|ref|YP_003033574.1| PPE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254234109|ref|ZP_04927433.1| PPE family protein [Mycobacterium tuberculosis C]
 gi|254366097|ref|ZP_04982141.1| PPE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|254552639|ref|ZP_05143086.1| PPE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289555797|ref|ZP_06445007.1| PPE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289747369|ref|ZP_06506747.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289759688|ref|ZP_06519066.1| PPE family protein [Mycobacterium tuberculosis T85]
 gi|289763710|ref|ZP_06523088.1| PPE family protein [Mycobacterium tuberculosis GM 1503]
 gi|294993650|ref|ZP_06799341.1| PPE family protein [Mycobacterium tuberculosis 210]
 gi|297636204|ref|ZP_06953984.1| PPE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297733198|ref|ZP_06962316.1| PPE family protein [Mycobacterium tuberculosis KZN R506]
 gi|306790801|ref|ZP_07429123.1| PPE family protein [Mycobacterium tuberculosis SUMu004]
 gi|306801158|ref|ZP_07437826.1| PPE family protein [Mycobacterium tuberculosis SUMu008]
 gi|306805370|ref|ZP_07442038.1| PPE family protein [Mycobacterium tuberculosis SUMu007]
 gi|306974001|ref|ZP_07486662.1| PPE family protein [Mycobacterium tuberculosis SUMu010]
 gi|307081711|ref|ZP_07490881.1| PPE family protein [Mycobacterium tuberculosis SUMu011]
 gi|307086321|ref|ZP_07495434.1| PPE family protein [Mycobacterium tuberculosis SUMu012]
 gi|313660528|ref|ZP_07817408.1| PPE family protein [Mycobacterium tuberculosis KZN V2475]
 gi|340628496|ref|YP_004746948.1| PPE family protein [Mycobacterium canettii CIPT 140010059]
 gi|81400908|sp|Q6MWW4.1|PPE61_MYCTU RecName: Full=Uncharacterized PPE family protein PPE61
 gi|31620305|emb|CAD95748.1| PPE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|41352801|emb|CAE55609.1| PPE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|121495099|emb|CAL73585.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124603777|gb|EAY61740.1| PPE family protein [Mycobacterium tuberculosis C]
 gi|134151609|gb|EBA43654.1| PPE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|148507547|gb|ABQ75356.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148723265|gb|ABR07890.1| PPE family protein [Mycobacterium tuberculosis F11]
 gi|224775063|dbj|BAH27869.1| PPE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253322076|gb|ACT26679.1| PPE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289440429|gb|EFD22922.1| PPE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289687897|gb|EFD55385.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289711216|gb|EFD75232.1| PPE family protein [Mycobacterium tuberculosis GM 1503]
 gi|289715252|gb|EFD79264.1| PPE family protein [Mycobacterium tuberculosis T85]
 gi|308332824|gb|EFP21675.1| PPE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308348049|gb|EFP36900.1| PPE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308352045|gb|EFP40896.1| PPE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308356682|gb|EFP45533.1| PPE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308360636|gb|EFP49487.1| PPE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308364251|gb|EFP53102.1| PPE family protein [Mycobacterium tuberculosis SUMu012]
 gi|326905372|gb|EGE52305.1| PPE family protein [Mycobacterium tuberculosis W-148]
 gi|328460304|gb|AEB05727.1| PPE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|339296351|gb|AEJ48462.1| PPE family protein [Mycobacterium tuberculosis CCDC5079]
 gi|339299952|gb|AEJ52062.1| PPE family protein [Mycobacterium tuberculosis CCDC5180]
 gi|340006686|emb|CCC45874.1| PPE family protein [Mycobacterium canettii CIPT 140010059]
 gi|341603472|emb|CCC66153.1| PPE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
 gi|344221364|gb|AEN01995.1| PPE family protein [Mycobacterium tuberculosis CTRI-2]
Length=406

 Score = 61.6 bits (148),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 42/123 (35%), Positives = 63/123 (52%), Gaps = 1/123 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHE-NWKGSSSEW  62
            M+P E  S  +Y GP A SL+AA     Q++  +++ AE+  + +  L    W G SS  
Sbjct  7    MLPPEVNSTRMYSGPGAGSLWAAAAAWDQVSAELQSAAETYRSVIASLTGWQWLGPSSVR  66

Query  63   MADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASN  122
            M  A   Y++WL+  + Q  +TA  I +    +E+     VPP  I  NR +V  LIA+N
Sbjct  67   MGAAVTPYVEWLTTTAAQARQTATQITAAATGFEQAFAMTVPPPAIMANRAQVLSLIATN  126

Query  123  VAG  125
              G
Sbjct  127  FFG  129


>gi|289572184|ref|ZP_06452411.1| PPE family protein [Mycobacterium tuberculosis K85]
 gi|289536615|gb|EFD41193.1| PPE family protein [Mycobacterium tuberculosis K85]
Length=406

 Score = 61.2 bits (147),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 42/123 (35%), Positives = 63/123 (52%), Gaps = 1/123 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHE-NWKGSSSEW  62
            M+P E  S  +Y GP A SL+AA     Q++  +++ AE+  + +  L    W G SS  
Sbjct  7    MLPPEVNSTRMYSGPGAGSLWAAAAAWDQVSAELQSAAETYRSVIASLTGWQWLGPSSVR  66

Query  63   MADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASN  122
            M  A   Y++WL+  + Q  +TA  I +    +E+     VPP  I  NR +V  LIA+N
Sbjct  67   MGAAVTPYVEWLTTTAAQARQTATQITAAATGFEQAFAMTVPPPAIMANRAQVLSLIATN  126

Query  123  VAG  125
              G
Sbjct  127  FFG  129


>gi|339633530|ref|YP_004725172.1| PPE family protein [Mycobacterium africanum GM041182]
 gi|339332886|emb|CCC28613.1| PPE family protein [Mycobacterium africanum GM041182]
Length=406

 Score = 61.2 bits (147),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 42/123 (35%), Positives = 63/123 (52%), Gaps = 1/123 (0%)

Query  4    MIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHE-NWKGSSSEW  62
            M+P E  S  +Y GP A SL+AA     Q++  +++ AE+  + +  L    W G SS  
Sbjct  7    MLPPEVNSTRMYSGPGAGSLWAAAAAWDQVSAELQSAAETYRSMIASLTGWQWLGPSSVR  66

Query  63   MADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASN  122
            M  A   Y++WL+  + Q  +TA  I +    +E+     VPP  I  NR +V  LIA+N
Sbjct  67   MGAAVTPYVEWLTTTAAQARQTATQITAAATGFEQAFAMTVPPPAIMANRAQVLSLIATN  126

Query  123  VAG  125
              G
Sbjct  127  FFG  129


>gi|31792998|ref|NP_855491.1| hypothetical protein Mb1838 [Mycobacterium bovis AF2122/97]
 gi|121637711|ref|YP_977934.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224990195|ref|YP_002644882.1| PPE Family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31618589|emb|CAD94541.1| PPE FAMILY PROTEIN [FIRST PART] [Mycobacterium bovis AF2122/97]
 gi|121493358|emb|CAL71829.1| PPE Family protein [first part] [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224773308|dbj|BAH26114.1| PPE Family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341601738|emb|CCC64411.1| PPE Family protein [first part] [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=187

 Score = 60.8 bits (146),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 44/121 (37%), Positives = 63/121 (53%), Gaps = 1/121 (0%)

Query  6    PAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDEL-HENWKGSSSEWMA  64
            P E  S  +Y GP A  + AA      LA  +++ A S  + ++ +  E+W G SS  MA
Sbjct  7    PPEITSGEMYLGPGAGPMLAAAVAWDGLAAELQSMAASYASIVEGMASESWLGPSSAGMA  66

Query  65   DAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVA  124
             AA  Y+ W+S  S Q    A    + V+AYE     VVPP  IA NR ++  L+A+N+ 
Sbjct  67   AAAAPYVTWMSGTSAQAKAAADQARAAVVAYETAFAAVVPPPQIAANRSQLISLVATNIF  126

Query  125  G  125
            G
Sbjct  127  G  127


>gi|254231991|ref|ZP_04925318.1| PPE family protein [Mycobacterium tuberculosis C]
 gi|254550817|ref|ZP_05141264.1| PPE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289757912|ref|ZP_06517290.1| PPE family protein [Mycobacterium tuberculosis T85]
 32 more sequence titles
 
gi|289761959|ref|ZP_06521337.1| PPE family protein [Mycobacterium tuberculosis GM 1503]
 gi|294996720|ref|ZP_06802411.1| PPE family protein [Mycobacterium tuberculosis 210]
 gi|297634369|ref|ZP_06952149.1| PPE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297731356|ref|ZP_06960474.1| PPE family protein [Mycobacterium tuberculosis KZN R506]
 gi|298525304|ref|ZP_07012713.1| ppe family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306779810|ref|ZP_07418147.1| PPE family protein [Mycobacterium tuberculosis SUMu002]
 gi|306784550|ref|ZP_07422872.1| PPE family protein [Mycobacterium tuberculosis SUMu003]
 gi|306788912|ref|ZP_07427234.1| PPE family protein [Mycobacterium tuberculosis SUMu004]
 gi|306793248|ref|ZP_07431550.1| PPE family protein [Mycobacterium tuberculosis SUMu005]
 gi|306797627|ref|ZP_07435929.1| PPE family protein [Mycobacterium tuberculosis SUMu006]
 gi|306803512|ref|ZP_07440180.1| PPE family protein [Mycobacterium tuberculosis SUMu008]
 gi|306808088|ref|ZP_07444756.1| PPE family protein [Mycobacterium tuberculosis SUMu007]
 gi|306967902|ref|ZP_07480563.1| PPE family protein [Mycobacterium tuberculosis SUMu009]
 gi|313658690|ref|ZP_07815570.1| PPE family protein [Mycobacterium tuberculosis KZN V2475]
 gi|124601050|gb|EAY60060.1| PPE family protein [Mycobacterium tuberculosis C]
 gi|289709465|gb|EFD73481.1| PPE family protein [Mycobacterium tuberculosis GM 1503]
 gi|289713476|gb|EFD77488.1| PPE family protein [Mycobacterium tuberculosis T85]
 gi|298495098|gb|EFI30392.1| ppe family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308327270|gb|EFP16121.1| PPE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308330710|gb|EFP19561.1| PPE family protein [Mycobacterium tuberculosis SUMu003]
 gi|308334535|gb|EFP23386.1| PPE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308338361|gb|EFP27212.1| PPE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308342040|gb|EFP30891.1| PPE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308345552|gb|EFP34403.1| PPE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308349834|gb|EFP38685.1| PPE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308354492|gb|EFP43343.1| PPE family protein [Mycobacterium tuberculosis SUMu009]
 gi|323719686|gb|EGB28807.1| PPE family protein [Mycobacterium tuberculosis CDC1551A]
 gi|326903413|gb|EGE50346.1| PPE family protein [Mycobacterium tuberculosis W-148]
 gi|328458902|gb|AEB04325.1| PPE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|339294745|gb|AEJ46856.1| PPE family protein [Mycobacterium tuberculosis CCDC5079]
 gi|339298373|gb|AEJ50483.1| PPE family protein [Mycobacterium tuberculosis CCDC5180]
 gi|344219631|gb|AEN00262.1| PPE family protein [Mycobacterium tuberculosis CTRI-2]
Length=468

 Score = 60.8 bits (146),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 44/121 (37%), Positives = 63/121 (53%), Gaps = 1/121 (0%)

Query  6    PAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDEL-HENWKGSSSEWMA  64
            P E  S  +Y GP A  + AA      LA  +++ A S  + ++ +  E+W G SS  MA
Sbjct  7    PPEITSGEMYLGPGAGPMLAAAVAWDGLAAELQSMAASYASIVEGMASESWLGPSSAGMA  66

Query  65   DAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVA  124
             AA  Y+ W+S  S Q    A    + V+AYE     VVPP  IA NR ++  L+A+N+ 
Sbjct  67   AAAAPYVTWMSGTSAQAKAAADQARAAVVAYETAFAAVVPPPQIAANRSQLISLVATNIF  126

Query  125  G  125
            G
Sbjct  127  G  127


>gi|148823022|ref|YP_001287776.1| PPE family protein [Mycobacterium tuberculosis F11]
 gi|253799147|ref|YP_003032148.1| PPE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254364637|ref|ZP_04980683.1| PPE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|289554417|ref|ZP_06443627.1| PPE family protein [Mycobacterium tuberculosis KZN 605]
 gi|134150151|gb|EBA42196.1| PPE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|148721549|gb|ABR06174.1| PPE family protein [Mycobacterium tuberculosis F11]
 gi|253320650|gb|ACT25253.1| PPE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289439049|gb|EFD21542.1| PPE family protein [Mycobacterium tuberculosis KZN 605]
Length=470

 Score = 60.5 bits (145),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 44/121 (37%), Positives = 63/121 (53%), Gaps = 1/121 (0%)

Query  6    PAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDEL-HENWKGSSSEWMA  64
            P E  S  +Y GP A  + AA      LA  +++ A S  + ++ +  E+W G SS  MA
Sbjct  9    PPEITSGEMYLGPGAGPMLAAAVAWDGLAAELQSMAASYASIVEGMASESWLGPSSAGMA  68

Query  65   DAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVA  124
             AA  Y+ W+S  S Q    A    + V+AYE     VVPP  IA NR ++  L+A+N+ 
Sbjct  69   AAAAPYVTWMSGTSAQAKAAADQARAAVVAYETAFAAVVPPPQIAANRSQLISLVATNIF  128

Query  125  G  125
            G
Sbjct  129  G  129



Lambda     K      H
   0.319    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 306895531426


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40