BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3440c

Length=103
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610576|ref|NP_217957.1|  hypothetical protein Rv3440c [Mycob...   197    4e-49
gi|341603382|emb|CCC66063.1|  hypothetical protein BCGM_3470c [My...   196    1e-48
gi|15843035|ref|NP_338072.1|  hypothetical protein MT3545 [Mycoba...   196    1e-48
gi|289763621|ref|ZP_06522999.1|  conserved hypothetical protein [...   194    5e-48
gi|340628411|ref|YP_004746863.1|  hypothetical protein MCAN_34571...   192    1e-47
gi|289571674|ref|ZP_06451901.1|  hypothetical protein TBJG_02205 ...   135    2e-30
gi|41410346|ref|NP_963182.1|  hypothetical protein MAP4248 [Mycob...   112    1e-23
gi|254821788|ref|ZP_05226789.1|  hypothetical protein MintA_17782...   110    5e-23
gi|183981129|ref|YP_001849420.1|  hypothetical protein MMAR_1109 ...   107    6e-22
gi|118616642|ref|YP_904974.1|  hypothetical protein MUL_0867 [Myc...   106    9e-22
gi|240167802|ref|ZP_04746461.1|  hypothetical protein MkanA1_0070...   102    2e-20
gi|254776813|ref|ZP_05218329.1|  hypothetical protein MaviaA2_194...   102    2e-20
gi|296165856|ref|ZP_06848343.1|  conserved hypothetical protein [...  98.2    4e-19
gi|342861885|ref|ZP_08718530.1|  hypothetical protein MCOL_23465 ...  87.0    9e-16
gi|145225522|ref|YP_001136200.1|  hypothetical protein Mflv_4946 ...  82.8    2e-14
gi|120402482|ref|YP_952311.1|  hypothetical protein Mvan_1473 [My...  80.9    6e-14
gi|108798107|ref|YP_638304.1|  hypothetical protein Mmcs_1135 [My...  73.6    8e-12
gi|169630826|ref|YP_001704475.1|  hypothetical protein MAB_3747c ...  64.3    5e-09
gi|118469781|ref|YP_885940.1|  hypothetical protein MSMEG_1560 [M...  62.4    2e-08
gi|333991906|ref|YP_004524520.1|  hypothetical protein JDM601_326...  52.4    2e-05
gi|226365642|ref|YP_002783425.1|  hypothetical protein ROP_62330 ...  43.1    0.012


>gi|15610576|ref|NP_217957.1| hypothetical protein Rv3440c [Mycobacterium tuberculosis H37Rv]
 gi|31794617|ref|NP_857110.1| hypothetical protein Mb3470c [Mycobacterium bovis AF2122/97]
 gi|121639361|ref|YP_979585.1| hypothetical protein BCG_3506c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 70 more sequence titles
 
gi|148663305|ref|YP_001284828.1| hypothetical protein MRA_3481 [Mycobacterium tuberculosis H37Ra]
 gi|148824650|ref|YP_001289404.1| hypothetical protein TBFG_13477 [Mycobacterium tuberculosis F11]
 gi|167966782|ref|ZP_02549059.1| hypothetical protein MtubH3_01423 [Mycobacterium tuberculosis 
H37Ra]
 gi|224991857|ref|YP_002646546.1| hypothetical protein JTY_3506 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253800485|ref|YP_003033486.1| hypothetical protein TBMG_03488 [Mycobacterium tuberculosis KZN 
1435]
 gi|254234036|ref|ZP_04927361.1| hypothetical protein TBCG_03379 [Mycobacterium tuberculosis C]
 gi|254366043|ref|ZP_04982088.1| hypothetical protein TBHG_03373 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|254552544|ref|ZP_05142991.1| hypothetical protein Mtube_19200 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289445041|ref|ZP_06434785.1| hypothetical protein TBLG_04094 [Mycobacterium tuberculosis T46]
 gi|289449144|ref|ZP_06438888.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289555712|ref|ZP_06444922.1| hypothetical protein TBXG_03462 [Mycobacterium tuberculosis KZN 
605]
 gi|289576177|ref|ZP_06456404.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289747274|ref|ZP_06506652.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289752165|ref|ZP_06511543.1| hypothetical protein TBDG_02940 [Mycobacterium tuberculosis T92]
 gi|289755573|ref|ZP_06514951.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289759603|ref|ZP_06518981.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294995779|ref|ZP_06801470.1| hypothetical protein Mtub2_15053 [Mycobacterium tuberculosis 
210]
 gi|297636099|ref|ZP_06953879.1| hypothetical protein MtubK4_18335 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297733099|ref|ZP_06962217.1| hypothetical protein MtubKR_18505 [Mycobacterium tuberculosis 
KZN R506]
 gi|298526925|ref|ZP_07014334.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306777787|ref|ZP_07416124.1| hypothetical protein TMAG_03823 [Mycobacterium tuberculosis SUMu001]
 gi|306782506|ref|ZP_07420843.1| hypothetical protein TMBG_03905 [Mycobacterium tuberculosis SUMu002]
 gi|306786325|ref|ZP_07424647.1| hypothetical protein TMCG_02589 [Mycobacterium tuberculosis SUMu003]
 gi|306790695|ref|ZP_07429017.1| hypothetical protein TMDG_03185 [Mycobacterium tuberculosis SUMu004]
 gi|306795222|ref|ZP_07433524.1| hypothetical protein TMEG_03823 [Mycobacterium tuberculosis SUMu005]
 gi|306799412|ref|ZP_07437714.1| hypothetical protein TMFG_03005 [Mycobacterium tuberculosis SUMu006]
 gi|306805258|ref|ZP_07441926.1| hypothetical protein TMHG_03964 [Mycobacterium tuberculosis SUMu008]
 gi|306809444|ref|ZP_07446112.1| hypothetical protein TMGG_03918 [Mycobacterium tuberculosis SUMu007]
 gi|306969552|ref|ZP_07482213.1| hypothetical protein TMIG_03714 [Mycobacterium tuberculosis SUMu009]
 gi|306973906|ref|ZP_07486567.1| hypothetical protein TMJG_03636 [Mycobacterium tuberculosis SUMu010]
 gi|307081617|ref|ZP_07490787.1| hypothetical protein TMKG_03793 [Mycobacterium tuberculosis SUMu011]
 gi|307086221|ref|ZP_07495334.1| hypothetical protein TMLG_03030 [Mycobacterium tuberculosis SUMu012]
 gi|313660430|ref|ZP_07817310.1| hypothetical protein MtubKV_18500 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339633445|ref|YP_004725087.1| hypothetical protein MAF_34550 [Mycobacterium africanum GM041182]
 gi|2104361|emb|CAB08689.1| HYPOTHETICAL PROTEIN Rv3440c [Mycobacterium tuberculosis H37Rv]
 gi|31620214|emb|CAD95657.1| HYPOTHETICAL PROTEIN Mb3470c [Mycobacterium bovis AF2122/97]
 gi|121495009|emb|CAL73495.1| Hypothetical protein BCG_3506c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|124599565|gb|EAY58669.1| hypothetical protein TBCG_03379 [Mycobacterium tuberculosis C]
 gi|134151556|gb|EBA43601.1| hypothetical protein TBHG_03373 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148507457|gb|ABQ75266.1| hypothetical protein MRA_3481 [Mycobacterium tuberculosis H37Ra]
 gi|148723177|gb|ABR07802.1| hypothetical protein TBFG_13477 [Mycobacterium tuberculosis F11]
 gi|224774972|dbj|BAH27778.1| hypothetical protein JTY_3506 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253321988|gb|ACT26591.1| hypothetical protein TBMG_03488 [Mycobacterium tuberculosis KZN 
1435]
 gi|289417960|gb|EFD15200.1| hypothetical protein TBLG_04094 [Mycobacterium tuberculosis T46]
 gi|289422102|gb|EFD19303.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289440344|gb|EFD22837.1| hypothetical protein TBXG_03462 [Mycobacterium tuberculosis KZN 
605]
 gi|289540608|gb|EFD45186.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289687802|gb|EFD55290.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289692752|gb|EFD60181.1| hypothetical protein TBDG_02940 [Mycobacterium tuberculosis T92]
 gi|289696160|gb|EFD63589.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289715167|gb|EFD79179.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298496719|gb|EFI32013.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308213874|gb|EFO73273.1| hypothetical protein TMAG_03823 [Mycobacterium tuberculosis SUMu001]
 gi|308324823|gb|EFP13674.1| hypothetical protein TMBG_03905 [Mycobacterium tuberculosis SUMu002]
 gi|308329077|gb|EFP17928.1| hypothetical protein TMCG_02589 [Mycobacterium tuberculosis SUMu003]
 gi|308332888|gb|EFP21739.1| hypothetical protein TMDG_03185 [Mycobacterium tuberculosis SUMu004]
 gi|308336547|gb|EFP25398.1| hypothetical protein TMEG_03823 [Mycobacterium tuberculosis SUMu005]
 gi|308340422|gb|EFP29273.1| hypothetical protein TMFG_03005 [Mycobacterium tuberculosis SUMu006]
 gi|308344284|gb|EFP33135.1| hypothetical protein TMGG_03918 [Mycobacterium tuberculosis SUMu007]
 gi|308348175|gb|EFP37026.1| hypothetical protein TMHG_03964 [Mycobacterium tuberculosis SUMu008]
 gi|308352899|gb|EFP41750.1| hypothetical protein TMIG_03714 [Mycobacterium tuberculosis SUMu009]
 gi|308356744|gb|EFP45595.1| hypothetical protein TMJG_03636 [Mycobacterium tuberculosis SUMu010]
 gi|308360691|gb|EFP49542.1| hypothetical protein TMKG_03793 [Mycobacterium tuberculosis SUMu011]
 gi|308364332|gb|EFP53183.1| hypothetical protein TMLG_03030 [Mycobacterium tuberculosis SUMu012]
 gi|326905287|gb|EGE52220.1| hypothetical protein TBPG_03231 [Mycobacterium tuberculosis W-148]
 gi|328460216|gb|AEB05639.1| hypothetical protein TBSG_03510 [Mycobacterium tuberculosis KZN 
4207]
 gi|339296264|gb|AEJ48375.1| hypothetical protein CCDC5079_3186 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339299867|gb|AEJ51977.1| hypothetical protein CCDC5180_3140 [Mycobacterium tuberculosis 
CCDC5180]
 gi|339332801|emb|CCC28524.1| hypothetical protein MAF_34550 [Mycobacterium africanum GM041182]
 gi|344221276|gb|AEN01907.1| hypothetical protein MTCTRI2_3508 [Mycobacterium tuberculosis 
CTRI-2]
Length=103

 Score =  197 bits (501),  Expect = 4e-49, Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%)

Query  1    MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60
            MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR
Sbjct  1    MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60

Query  61   CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARIG  103
            CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARIG
Sbjct  61   CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARIG  103


>gi|341603382|emb|CCC66063.1| hypothetical protein BCGM_3470c [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=103

 Score =  196 bits (497),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 102/103 (99%), Positives = 102/103 (99%), Gaps = 0/103 (0%)

Query  1    MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60
            MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR
Sbjct  1    MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60

Query  61   CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARIG  103
            CRLDRL GELSVWSRAAVQIAFALRAGANRYAEADLCAAARIG
Sbjct  61   CRLDRLGGELSVWSRAAVQIAFALRAGANRYAEADLCAAARIG  103


>gi|15843035|ref|NP_338072.1| hypothetical protein MT3545 [Mycobacterium tuberculosis CDC1551]
 gi|13883378|gb|AAK47886.1| hypothetical protein MT3545 [Mycobacterium tuberculosis CDC1551]
 gi|323717924|gb|EGB27113.1| hypothetical protein TMMG_03603 [Mycobacterium tuberculosis CDC1551A]
Length=103

 Score =  196 bits (497),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 102/103 (99%), Positives = 102/103 (99%), Gaps = 0/103 (0%)

Query  1    MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60
            MRPDSVNSAGIDIAAVYAVADRFSA AELIDDAIGNHLTRLAFGGACAGRGHASRGDALR
Sbjct  1    MRPDSVNSAGIDIAAVYAVADRFSAGAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60

Query  61   CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARIG  103
            CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARIG
Sbjct  61   CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARIG  103


>gi|289763621|ref|ZP_06522999.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289711127|gb|EFD75143.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=106

 Score =  194 bits (492),  Expect = 5e-48, Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%), Gaps = 0/101 (0%)

Query  1    MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60
            MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR
Sbjct  1    MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60

Query  61   CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAAR  101
            CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAAR
Sbjct  61   CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAAR  101


>gi|340628411|ref|YP_004746863.1| hypothetical protein MCAN_34571 [Mycobacterium canettii CIPT 
140010059]
 gi|340006601|emb|CCC45788.1| hypothetical protein MCAN_34571 [Mycobacterium canettii CIPT 
140010059]
Length=103

 Score =  192 bits (488),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 100/103 (98%), Positives = 101/103 (99%), Gaps = 0/103 (0%)

Query  1    MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60
            MRPDS NSAGIDIAAVYAVADRF+AAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR
Sbjct  1    MRPDSANSAGIDIAAVYAVADRFNAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60

Query  61   CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARIG  103
            CRLDRLAGELSVWSRAA QIAFALRAGANRYAEADLCAAARIG
Sbjct  61   CRLDRLAGELSVWSRAAAQIAFALRAGANRYAEADLCAAARIG  103


>gi|289571674|ref|ZP_06451901.1| hypothetical protein TBJG_02205 [Mycobacterium tuberculosis T17]
 gi|289545428|gb|EFD49076.1| hypothetical protein TBJG_02205 [Mycobacterium tuberculosis T17]
Length=85

 Score =  135 bits (340),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 68/68 (100%), Positives = 68/68 (100%), Gaps = 0/68 (0%)

Query  36   NHLTRLAFGGACAGRGHASRGDALRCRLDRLAGELSVWSRAAVQIAFALRAGANRYAEAD  95
            NHLTRLAFGGACAGRGHASRGDALRCRLDRLAGELSVWSRAAVQIAFALRAGANRYAEAD
Sbjct  18   NHLTRLAFGGACAGRGHASRGDALRCRLDRLAGELSVWSRAAVQIAFALRAGANRYAEAD  77

Query  96   LCAAARIG  103
            LCAAARIG
Sbjct  78   LCAAARIG  85


>gi|41410346|ref|NP_963182.1| hypothetical protein MAP4248 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118463571|ref|YP_883518.1| hypothetical protein MAV_4383 [Mycobacterium avium 104]
 gi|41399180|gb|AAS06798.1| hypothetical protein MAP_4248 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118164858|gb|ABK65755.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336460689|gb|EGO39579.1| hypothetical protein MAPs_37800 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=109

 Score =  112 bits (281),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 59/102 (58%), Positives = 74/102 (73%), Gaps = 0/102 (0%)

Query  1    MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60
             RP +V    ID+AA   VA++F+ AAE +D A+ +HL RLAFGGA AGR H  RGDAL 
Sbjct  7    TRPGAVARTQIDVAAAQRVANQFAVAAEFLDRAVTDHLARLAFGGAVAGRAHTERGDALH  66

Query  61   CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARI  102
              L RLAG++S WSRA+ +IA ALR+ A RYA+A+L AAARI
Sbjct  67   VELQRLAGQVSQWSRASGEIAAALRSSAERYADAELYAAARI  108


>gi|254821788|ref|ZP_05226789.1| hypothetical protein MintA_17782 [Mycobacterium intracellulare 
ATCC 13950]
Length=109

 Score =  110 bits (276),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 57/101 (57%), Positives = 75/101 (75%), Gaps = 0/101 (0%)

Query  2    RPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALRC  61
            RP +   A ID +A + VA++F+ AAE +D A+ +HL RLAFGGACAGR H +RGDALR 
Sbjct  8    RPVAAARAQIDASATHRVANQFAMAAEFLDRAVSDHLARLAFGGACAGRAHTARGDALRV  67

Query  62   RLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARI  102
             L RL  +++ WSRA+ +IA ALR+ A RYA+A+L AAARI
Sbjct  68   ELGRLTQQVTQWSRASSEIAAALRSSAQRYADAELYAAARI  108


>gi|183981129|ref|YP_001849420.1| hypothetical protein MMAR_1109 [Mycobacterium marinum M]
 gi|183174455|gb|ACC39565.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=103

 Score =  107 bits (267),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 59/102 (58%), Positives = 71/102 (70%), Gaps = 0/102 (0%)

Query  1    MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60
            MRP+   ++ ID+AAV  VA+R  AAAELID+AI +H  RL F GA AGR + S GDALR
Sbjct  1    MRPELARNSRIDVAAVQVVAERLYAAAELIDNAIADHWARLTFDGAAAGRDYPSHGDALR  60

Query  61   CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARI  102
              L+RL  +LS WS A V IA A+RA AN Y +AD  AAARI
Sbjct  61   AGLERLGAQLSQWSSATVDIAVAMRAAANHYVDADRGAAARI  102


>gi|118616642|ref|YP_904974.1| hypothetical protein MUL_0867 [Mycobacterium ulcerans Agy99]
 gi|118568752|gb|ABL03503.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=103

 Score =  106 bits (265),  Expect = 9e-22, Method: Compositional matrix adjust.
 Identities = 59/102 (58%), Positives = 71/102 (70%), Gaps = 0/102 (0%)

Query  1    MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60
            MRP+   ++ ID+AAV  VA+R  AAAELID+AI +H  RL F GA AGR + S GDALR
Sbjct  1    MRPELARNSRIDVAAVQVVAERLCAAAELIDNAIADHWARLTFDGAAAGRDYPSHGDALR  60

Query  61   CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARI  102
              L+RL  +LS WS A V IA A+RA AN Y +AD  AAARI
Sbjct  61   AGLERLGAQLSQWSSATVDIAVAMRAAANHYVDADRGAAARI  102


>gi|240167802|ref|ZP_04746461.1| hypothetical protein MkanA1_00700 [Mycobacterium kansasii ATCC 
12478]
Length=88

 Score =  102 bits (255),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 56/87 (65%), Positives = 67/87 (78%), Gaps = 0/87 (0%)

Query  16   VYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALRCRLDRLAGELSVWSR  75
            ++AVADR S AAEL+D+A  N L+RL F GA AGR H  +G+ALR  +DRL  ELS WSR
Sbjct  1    MFAVADRISTAAELVDEAAVNLLSRLTFCGARAGRAHLQQGEALRTAMDRLGAELSQWSR  60

Query  76   AAVQIAFALRAGANRYAEADLCAAARI  102
            AA +IA ALRAGA RYA+AD+ AAARI
Sbjct  61   AAAEIAVALRAGAVRYADADVSAAARI  87


>gi|254776813|ref|ZP_05218329.1| hypothetical protein MaviaA2_19401 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=91

 Score =  102 bits (254),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 68/90 (76%), Gaps = 0/90 (0%)

Query  13   IAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALRCRLDRLAGELSV  72
            +AA   VA++F+ AAE +D A+ +HL RLAFGGA AGR H  RGDAL   L RLAG++S 
Sbjct  1    MAAAQRVANQFAVAAEFLDRAVTDHLARLAFGGAVAGRAHTERGDALHVELQRLAGQVSQ  60

Query  73   WSRAAVQIAFALRAGANRYAEADLCAAARI  102
            WSRA+ +IA ALR+ A RYA+A+L AAARI
Sbjct  61   WSRASGEIAAALRSSAERYADAELYAAARI  90


>gi|296165856|ref|ZP_06848343.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898790|gb|EFG78309.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=109

 Score = 98.2 bits (243),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 56/102 (55%), Positives = 77/102 (76%), Gaps = 0/102 (0%)

Query  1    MRPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALR  60
            +RP +V    ID++A + VAD+F AA++++D A+G+ L RLAFGGA AGR H +RGDALR
Sbjct  7    VRPPTVARTEIDVSATHRVADQFRAASDILDRALGDRLGRLAFGGATAGRAHTARGDALR  66

Query  61   CRLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARI  102
              L+RL   ++ W+RA+  IA ALRA A+RYA+A+L AAARI
Sbjct  67   AELERLTAGVAQWARASADIAAALRASADRYADAELYAAARI  108


>gi|342861885|ref|ZP_08718530.1| hypothetical protein MCOL_23465 [Mycobacterium colombiense CECT 
3035]
 gi|342130702|gb|EGT84006.1| hypothetical protein MCOL_23465 [Mycobacterium colombiense CECT 
3035]
Length=109

 Score = 87.0 bits (214),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 58/101 (58%), Positives = 75/101 (75%), Gaps = 0/101 (0%)

Query  2    RPDSVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALRC  61
            RP +     ID+ A   VA++FS AAE +D A+G+HL RLAFGGA AGR HA+RG+ALR 
Sbjct  8    RPVATAGTQIDVPAAQRVANQFSMAAEFLDRAVGDHLCRLAFGGAGAGRAHAARGEALRA  67

Query  62   RLDRLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARI  102
             L+RL  ++S WSRA+ +IA ALR+ A RYA+A+L AAARI
Sbjct  68   ELERLVAQVSQWSRASGEIAAALRSSAERYADAELYAAARI  108


>gi|145225522|ref|YP_001136200.1| hypothetical protein Mflv_4946 [Mycobacterium gilvum PYR-GCK]
 gi|315445875|ref|YP_004078754.1| hypothetical protein Mspyr1_43630 [Mycobacterium sp. Spyr1]
 gi|145218008|gb|ABP47412.1| hypothetical protein Mflv_4946 [Mycobacterium gilvum PYR-GCK]
 gi|315264178|gb|ADU00920.1| hypothetical protein Mspyr1_43630 [Mycobacterium sp. Spyr1]
Length=101

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 47/99 (48%), Positives = 64/99 (65%), Gaps = 0/99 (0%)

Query  5    SVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALRCRLD  64
            +V +A +D AAV A+A  + A + ++D A+  H   + FGGA AGR +  RG+ALR  + 
Sbjct  3    TVGAARVDSAAVRAIAREYDAVSSIVDGAVRQHFGDMDFGGASAGRAYVERGEALRATVA  62

Query  65   RLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARIG  103
             LA  L  WSRAA +IA ALRA A+RY +AD  AA R+G
Sbjct  63   ELAVGLRQWSRAATEIAVALRASADRYRDADERAAGRVG  101


>gi|120402482|ref|YP_952311.1| hypothetical protein Mvan_1473 [Mycobacterium vanbaalenii PYR-1]
 gi|119955300|gb|ABM12305.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=101

 Score = 80.9 bits (198),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 46/99 (47%), Positives = 63/99 (64%), Gaps = 0/99 (0%)

Query  5    SVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALRCRLD  64
            +  +A +D  AV+A+A  +  AA ++D A+  HL+ L FGGA AGR H + GDA+R  L 
Sbjct  3    TAGAARVDTVAVHAIAREYETAASIVDAALRTHLSGLEFGGATAGRAHVAHGDAVRDALF  62

Query  65   RLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARIG  103
             +A  L  WSRAA +IA ALR  A+RY +AD  A  R+G
Sbjct  63   GVASALRQWSRAATEIAAALRMSADRYRDADARAGERVG  101


>gi|108798107|ref|YP_638304.1| hypothetical protein Mmcs_1135 [Mycobacterium sp. MCS]
 gi|119867203|ref|YP_937155.1| hypothetical protein Mkms_1152 [Mycobacterium sp. KMS]
 gi|126433765|ref|YP_001069456.1| hypothetical protein Mjls_1162 [Mycobacterium sp. JLS]
 gi|108768526|gb|ABG07248.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119693292|gb|ABL90365.1| conserved hypothetical protein [Mycobacterium sp. KMS]
 gi|126233565|gb|ABN96965.1| hypothetical protein Mjls_1162 [Mycobacterium sp. JLS]
Length=101

 Score = 73.6 bits (179),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 42/98 (43%), Positives = 65/98 (67%), Gaps = 0/98 (0%)

Query  5    SVNSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALRCRLD  64
            +V +A +D AA+ ++A ++ A A +++ A+G HL+ L+F G+ AGR H + G+ALR  LD
Sbjct  3    AVRAARVDGAALVSIAGQYDAVANIVESAVGTHLSALSFDGSAAGRDHTAHGEALRAALD  62

Query  65   RLAGELSVWSRAAVQIAFALRAGANRYAEADLCAAARI  102
             +   L  W+R+A  +A  LRA A RYA+AD  AA R+
Sbjct  63   DVVVALRGWARSAGGVASELRASAVRYAQADADAALRV  100


>gi|169630826|ref|YP_001704475.1| hypothetical protein MAB_3747c [Mycobacterium abscessus ATCC 
19977]
 gi|169242793|emb|CAM63821.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=101

 Score = 64.3 bits (155),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 40/92 (44%), Positives = 50/92 (55%), Gaps = 1/92 (1%)

Query  11   IDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALRCRLDRLAGEL  70
            ID+A V  VA  F   A  +  AI   L  L+FGGA AGR H ++GD +R  L  +   L
Sbjct  6    IDVAGVQGVAGEFDNIAGELQKAI-EQLRGLSFGGASAGRWHTAKGDDVRSGLREVVTHL  64

Query  71   SVWSRAAVQIAFALRAGANRYAEADLCAAARI  102
              W RA   IA  LRA A RYAE +   AA++
Sbjct  65   EDWHRANTAIAEQLRATAQRYAERESKTAAKV  96


>gi|118469781|ref|YP_885940.1| hypothetical protein MSMEG_1560 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118171068|gb|ABK71964.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=102

 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 45/97 (47%), Positives = 56/97 (58%), Gaps = 0/97 (0%)

Query  7    NSAGIDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALRCRLDRL  66
            + A +D  A+ A A  +   AE ID  I   L R AF GA AGR H + G+A+R  LD L
Sbjct  5    DRASVDADALRAAAHGYDTVAETIDTVIRTTLGRPAFDGASAGRRHVAHGNAVRGALDDL  64

Query  67   AGELSVWSRAAVQIAFALRAGANRYAEADLCAAARIG  103
             G +  W+ AA +IA  LR  A RYA AD  AAAR+G
Sbjct  65   TGAMRQWATAADEIAHLLRTSAGRYAAADDHAAARVG  101


>gi|333991906|ref|YP_004524520.1| hypothetical protein JDM601_3266 [Mycobacterium sp. JDM601]
 gi|333487874|gb|AEF37266.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=100

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 45/93 (49%), Positives = 55/93 (60%), Gaps = 0/93 (0%)

Query  11   IDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALRCRLDRLAGEL  70
            +D AA+  VAD     A  ID A+   L  L F G+ AGR H + G+ALR  LD  A E+
Sbjct  8    LDAAALRCVADCLDDTAAAIDVAVRIRLGGLVFDGSAAGRDHVAAGEALRRALDAWAPEM  67

Query  71   SVWSRAAVQIAFALRAGANRYAEADLCAAARIG  103
            + WSRA  +IA ALRAG  RY  A+  AA RIG
Sbjct  68   TRWSRAGAEIAAALRAGLARYGAAESFAADRIG  100


>gi|226365642|ref|YP_002783425.1| hypothetical protein ROP_62330 [Rhodococcus opacus B4]
 gi|226244132|dbj|BAH54480.1| hypothetical protein [Rhodococcus opacus B4]
Length=102

 Score = 43.1 bits (100),  Expect = 0.012, Method: Compositional matrix adjust.
 Identities = 32/92 (35%), Positives = 47/92 (52%), Gaps = 1/92 (1%)

Query  11   IDIAAVYAVADRFSAAAELIDDAIGNHLTRLAFGGACAGRGHASRGDALRCRLDRLAGEL  70
            +D+A V     R   +AE++         RL F GA AGR +A++GDA+R  L  +   L
Sbjct  7    VDVAVVTDAGTRLLRSAEVLRQQAA-ETARLEFAGAQAGRDYAAKGDAVRDALGVVGVAL  65

Query  71   SVWSRAAVQIAFALRAGANRYAEADLCAAARI  102
            + W+  A     A RA A+RY+  D   AA +
Sbjct  66   AQWAADADSFGHAFRAAADRYSGTDANVAADV  97



Lambda     K      H
   0.324    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127822873252


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40