BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3442c

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610578|ref|NP_217959.1|  30S ribosomal protein S9 [Mycobacte...   301    2e-80
gi|289445043|ref|ZP_06434787.1|  30S ribosomal protein S9 rpsI [M...   300    6e-80
gi|240167800|ref|ZP_04746459.1|  30S ribosomal protein S9 [Mycoba...   260    4e-68
gi|118466344|ref|YP_883520.1|  30S ribosomal protein S9 [Mycobact...   258    2e-67
gi|41410344|ref|NP_963180.1|  30S ribosomal protein S9 [Mycobacte...   256    1e-66
gi|254821786|ref|ZP_05226787.1|  30S ribosomal protein S9 [Mycoba...   254    3e-66
gi|296165847|ref|ZP_06848337.1|  30S ribosomal protein S9 [Mycoba...   253    5e-66
gi|183981127|ref|YP_001849418.1|  ribosomal protein S9, RpsI [Myc...   250    4e-65
gi|15827098|ref|NP_301361.1|  30S ribosomal protein S9 [Mycobacte...   249    7e-65
gi|118616640|ref|YP_904972.1|  30S ribosomal protein S9 [Mycobact...   248    2e-64
gi|118468477|ref|YP_885937.1|  30S ribosomal protein S9 [Mycobact...   241    2e-62
gi|145225525|ref|YP_001136203.1|  30S ribosomal protein S9 [Mycob...   241    3e-62
gi|120402479|ref|YP_952308.1|  30S ribosomal protein S9 [Mycobact...   240    5e-62
gi|108798103|ref|YP_638300.1|  30S ribosomal protein S9 [Mycobact...   239    1e-61
gi|342861883|ref|ZP_08718528.1|  30S ribosomal protein S9 [Mycoba...   239    1e-61
gi|336441182|gb|AEI54816.1|  30S ribosomal protein S9 [Mycobacter...   238    3e-61
gi|336441186|gb|AEI54818.1|  30S ribosomal protein S9 [Mycobacter...   237    4e-61
gi|336441184|gb|AEI54817.1|  30S ribosomal protein S9 [Mycobacter...   237    5e-61
gi|336441190|gb|AEI54820.1|  30S ribosomal protein S9 [Mycobacter...   237    5e-61
gi|169630830|ref|YP_001704479.1|  30s ribosomal protein S9 [Mycob...   237    5e-61
gi|336441188|gb|AEI54819.1|  30S ribosomal protein S9 [Mycobacter...   234    4e-60
gi|326381864|ref|ZP_08203557.1|  30S ribosomal protein S9 [Gordon...   234    5e-60
gi|262201641|ref|YP_003272849.1|  30S ribosomal protein S9 [Gordo...   231    2e-59
gi|54022834|ref|YP_117076.1|  30S ribosomal protein S9 [Nocardia ...   231    2e-59
gi|296138600|ref|YP_003645843.1|  30S ribosomal protein S9 [Tsuka...   228    2e-58
gi|343925126|ref|ZP_08764658.1|  30S ribosomal protein S9 [Gordon...   228    2e-58
gi|111023134|ref|YP_706106.1|  30S ribosomal protein S9 [Rhodococ...   228    3e-58
gi|226365640|ref|YP_002783423.1|  30S ribosomal protein S9 [Rhodo...   227    4e-58
gi|312140873|ref|YP_004008209.1|  30S ribosomal protein s9 rpsi [...   225    2e-57
gi|226305394|ref|YP_002765352.1|  30S ribosomal protein S9 [Rhodo...   221    3e-56
gi|333921703|ref|YP_004495284.1|  30S ribosomal protein S9 [Amyco...   221    4e-56
gi|229489395|ref|ZP_04383258.1|  ribosomal protein S9 [Rhodococcu...   220    4e-56
gi|291003847|ref|ZP_06561820.1|  30S ribosomal protein S9 [Saccha...   211    2e-53
gi|333991908|ref|YP_004524522.1|  30S ribosomal protein S9 RpsI [...   211    3e-53
gi|300782658|ref|YP_003762949.1|  30S ribosomal protein S9 [Amyco...   211    3e-53
gi|134103209|ref|YP_001108870.1|  30S ribosomal protein S9 [Sacch...   211    4e-53
gi|302524042|ref|ZP_07276384.1|  ribosomal protein S9 [Streptomyc...   210    6e-53
gi|284992834|ref|YP_003411388.1|  30S ribosomal protein S9 [Geode...   209    1e-52
gi|257054516|ref|YP_003132348.1|  30S ribosomal protein S9P [Sacc...   208    2e-52
gi|331699124|ref|YP_004335363.1|  30S ribosomal protein S9 [Pseud...   207    6e-52
gi|258651417|ref|YP_003200573.1|  30S ribosomal protein S9 [Nakam...   206    6e-52
gi|319948368|ref|ZP_08022510.1|  30S ribosomal protein S9 [Dietzi...   205    2e-51
gi|296392778|ref|YP_003657662.1|  30S ribosomal protein S9 [Segni...   202    9e-51
gi|340795255|ref|YP_004760718.1|  30S ribosomal protein S9 [Coryn...   197    5e-49
gi|68536834|ref|YP_251539.1|  30S ribosomal protein S9 [Corynebac...   196    7e-49
gi|291298449|ref|YP_003509727.1|  30S ribosomal protein S9 [Stack...   196    9e-49
gi|225020503|ref|ZP_03709695.1|  hypothetical protein CORMATOL_00...   196    1e-48
gi|336326383|ref|YP_004606349.1|  30S ribosomal protein S9 [Coryn...   196    1e-48
gi|305679646|ref|ZP_07402456.1|  ribosomal protein S9 [Corynebact...   194    4e-48
gi|158317759|ref|YP_001510267.1|  30S ribosomal protein S9 [Frank...   192    1e-47


>gi|15610578|ref|NP_217959.1| 30S ribosomal protein S9 [Mycobacterium tuberculosis H37Rv]
 gi|15843037|ref|NP_338074.1| 30S ribosomal protein S9 [Mycobacterium tuberculosis CDC1551]
 gi|31794619|ref|NP_857112.1| 30S ribosomal protein S9 [Mycobacterium bovis AF2122/97]
 77 more sequence titles
 Length=151

 Score =  301 bits (771),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)

Query  1    MTETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYF  60
            MTETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYF
Sbjct  1    MTETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYF  60

Query  61   PNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALK  120
            PNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALK
Sbjct  61   PNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALK  120

Query  121  KAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            KAGFLTRDPRATERKKYGLKKARKAPQYSKR
Sbjct  121  KAGFLTRDPRATERKKYGLKKARKAPQYSKR  151


>gi|289445043|ref|ZP_06434787.1| 30S ribosomal protein S9 rpsI [Mycobacterium tuberculosis T46]
 gi|289571676|ref|ZP_06451903.1| 30S ribosomal protein S9 rpsI [Mycobacterium tuberculosis T17]
 gi|289752167|ref|ZP_06511545.1| 30S ribosomal protein S9 rpsI [Mycobacterium tuberculosis T92]
 gi|289755575|ref|ZP_06514953.1| 30S ribosomal protein S9 [Mycobacterium tuberculosis EAS054]
 gi|289417962|gb|EFD15202.1| 30S ribosomal protein S9 rpsI [Mycobacterium tuberculosis T46]
 gi|289545430|gb|EFD49078.1| 30S ribosomal protein S9 rpsI [Mycobacterium tuberculosis T17]
 gi|289692754|gb|EFD60183.1| 30S ribosomal protein S9 rpsI [Mycobacterium tuberculosis T92]
 gi|289696162|gb|EFD63591.1| 30S ribosomal protein S9 [Mycobacterium tuberculosis EAS054]
Length=151

 Score =  300 bits (767),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 150/151 (99%), Positives = 150/151 (99%), Gaps = 0/151 (0%)

Query  1    MTETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYF  60
            MTETTPAPQTPA PAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYF
Sbjct  1    MTETTPAPQTPATPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYF  60

Query  61   PNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALK  120
            PNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALK
Sbjct  61   PNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALK  120

Query  121  KAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            KAGFLTRDPRATERKKYGLKKARKAPQYSKR
Sbjct  121  KAGFLTRDPRATERKKYGLKKARKAPQYSKR  151


>gi|240167800|ref|ZP_04746459.1| 30S ribosomal protein S9 [Mycobacterium kansasii ATCC 12478]
Length=150

 Score =  260 bits (665),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 131/151 (87%), Positives = 137/151 (91%), Gaps = 1/151 (0%)

Query  1    MTETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYF  60
            MTE + AP   + P    +SFV ERPIQTVGRRKEAVVRVRLVPGTGKFDLNGR+LEDYF
Sbjct  1    MTEISEAPAVESQPVH-HESFVFERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRTLEDYF  59

Query  61   PNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALK  120
            PNKVHQQLIKAPLVTVDRVES+DIFAHL GGGPSGQAGALRLGIARALIL +PEDRP LK
Sbjct  60   PNKVHQQLIKAPLVTVDRVESYDIFAHLNGGGPSGQAGALRLGIARALILANPEDRPPLK  119

Query  121  KAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            KAGFLTRDPRATERKKYGLKKARKAPQYSKR
Sbjct  120  KAGFLTRDPRATERKKYGLKKARKAPQYSKR  150


>gi|118466344|ref|YP_883520.1| 30S ribosomal protein S9 [Mycobacterium avium 104]
 gi|254776815|ref|ZP_05218331.1| 30S ribosomal protein S9 [Mycobacterium avium subsp. avium ATCC 
25291]
 gi|166229572|sp|A0QKT2.1|RS9_MYCA1 RecName: Full=30S ribosomal protein S9
 gi|118167631|gb|ABK68528.1| ribosomal protein S9 [Mycobacterium avium 104]
Length=166

 Score =  258 bits (660),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 133/166 (81%), Positives = 141/166 (85%), Gaps = 15/166 (9%)

Query  1    MTETTPAPQTPAAP---------------AGPAQSFVLERPIQTVGRRKEAVVRVRLVPG  45
            MTETT A + P  P               A PA+S+V ERPIQTVGRRKEAVVRVRLVPG
Sbjct  1    MTETTEALENPDNPDAETAAAEVTEAPVEAVPAESYVFERPIQTVGRRKEAVVRVRLVPG  60

Query  46   TGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIA  105
            TGKF+LNGR+LE YFPNKVHQQLIKAPLVTVDRV+SFDI+AHL GGGPSGQAGALRLGIA
Sbjct  61   TGKFNLNGRTLEGYFPNKVHQQLIKAPLVTVDRVDSFDIYAHLHGGGPSGQAGALRLGIA  120

Query  106  RALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            RALIL SP+DRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR
Sbjct  121  RALILASPDDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR  166


>gi|41410344|ref|NP_963180.1| 30S ribosomal protein S9 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|81700270|sp|Q73S30.1|RS9_MYCPA RecName: Full=30S ribosomal protein S9
 gi|41399178|gb|AAS06796.1| RpsI [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336460691|gb|EGO39581.1| ribosomal protein S9 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=166

 Score =  256 bits (653),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 131/166 (79%), Positives = 140/166 (85%), Gaps = 15/166 (9%)

Query  1    MTETTPAPQTPAAP---------------AGPAQSFVLERPIQTVGRRKEAVVRVRLVPG  45
            MTETT A + P  P               A PA+S+V ERPIQTVGRRKEAVVRVRLVPG
Sbjct  1    MTETTEALENPDNPEAETAAAEVTEAPVEAVPAESYVFERPIQTVGRRKEAVVRVRLVPG  60

Query  46   TGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIA  105
            TGKF+LNGR+LE YFPNKVHQQL+KAPLVTVDRV+ FDI+AHL GGGPSGQAGALRLGIA
Sbjct  61   TGKFNLNGRTLEGYFPNKVHQQLVKAPLVTVDRVDGFDIYAHLHGGGPSGQAGALRLGIA  120

Query  106  RALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            RALIL SP+DRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR
Sbjct  121  RALILASPDDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR  166


>gi|254821786|ref|ZP_05226787.1| 30S ribosomal protein S9 [Mycobacterium intracellulare ATCC 13950]
Length=179

 Score =  254 bits (650),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 128/152 (85%), Positives = 137/152 (91%), Gaps = 3/152 (1%)

Query  3    ETTPAP---QTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDY  59
            E T AP     PA  A PA+ +V ERPIQTVGRRKEAVVRVRLVPGTG+F+LNGR+LE Y
Sbjct  28   EVTEAPVEASEPADVAAPAEPYVFERPIQTVGRRKEAVVRVRLVPGTGQFNLNGRTLEGY  87

Query  60   FPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPAL  119
            FPNKVHQQLIKAPLVTVDRVESFD++AHL GGGPSGQAGALRLGIARALI+ SP+DRPAL
Sbjct  88   FPNKVHQQLIKAPLVTVDRVESFDVYAHLHGGGPSGQAGALRLGIARALIVASPDDRPAL  147

Query  120  KKAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            KKAGFLTRDPRATERKKYGLKKARKAPQYSKR
Sbjct  148  KKAGFLTRDPRATERKKYGLKKARKAPQYSKR  179


>gi|296165847|ref|ZP_06848337.1| 30S ribosomal protein S9 [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295898803|gb|EFG78319.1| 30S ribosomal protein S9 [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=164

 Score =  253 bits (647),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 136/164 (83%), Positives = 139/164 (85%), Gaps = 13/164 (7%)

Query  1    MTETTPA-PQTPAAPAGP------------AQSFVLERPIQTVGRRKEAVVRVRLVPGTG  47
            MTETT A   T A P  P            A+SFV +RPIQTVGRRKEAVVRVRLVPGTG
Sbjct  1    MTETTEALDDTTATPETPDVPAEAPAAAPAAESFVFDRPIQTVGRRKEAVVRVRLVPGTG  60

Query  48   KFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARA  107
            KFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVE+FDIFA L GGGPSGQAGALRLGIARA
Sbjct  61   KFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVENFDIFALLHGGGPSGQAGALRLGIARA  120

Query  108  LILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            LIL  PEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR
Sbjct  121  LILAQPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR  164


>gi|183981127|ref|YP_001849418.1| ribosomal protein S9, RpsI [Mycobacterium marinum M]
 gi|226695247|sp|B2HCZ1.1|RS9_MYCMM RecName: Full=30S ribosomal protein S9
 gi|183174453|gb|ACC39563.1| ribosomal protein S9, RpsI [Mycobacterium marinum M]
Length=152

 Score =  250 bits (639),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 128/152 (85%), Positives = 136/152 (90%), Gaps = 1/152 (0%)

Query  1    MTETTPAPQTPAAPAGP-AQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDY  59
            MTETTP  +         ++SFV ERPIQTVGRRKEAVVRVRLVPG+GKFDLNGRSLE Y
Sbjct  1    MTETTPEVEVAVEAEVTYSESFVFERPIQTVGRRKEAVVRVRLVPGSGKFDLNGRSLEAY  60

Query  60   FPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPAL  119
            FPNKVHQQLIKAPLVTVDR+ES+DIFA L GGGPSGQAGALRLGIARALI+ +PEDRPAL
Sbjct  61   FPNKVHQQLIKAPLVTVDRLESYDIFALLHGGGPSGQAGALRLGIARALIVANPEDRPAL  120

Query  120  KKAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            KKAGFLTRDPRATERKKYGLKKARKAPQYSKR
Sbjct  121  KKAGFLTRDPRATERKKYGLKKARKAPQYSKR  152


>gi|15827098|ref|NP_301361.1| 30S ribosomal protein S9 [Mycobacterium leprae TN]
 gi|221229576|ref|YP_002502992.1| 30S ribosomal protein S9 [Mycobacterium leprae Br4923]
 gi|730673|sp|P40828.1|RS9_MYCLE RecName: Full=30S ribosomal protein S9
 gi|254766317|sp|B8ZUC0.1|RS9_MYCLB RecName: Full=30S ribosomal protein S9
 gi|467114|gb|AAA17296.1| rpsI [Mycobacterium leprae]
 gi|13092646|emb|CAC29873.1| 30S ribosomal protein S9 [Mycobacterium leprae]
 gi|219932683|emb|CAR70458.1| 30S ribosomal protein S9 [Mycobacterium leprae Br4923]
Length=153

 Score =  249 bits (637),  Expect = 7e-65, Method: Compositional matrix adjust.
 Identities = 130/155 (84%), Positives = 137/155 (89%), Gaps = 6/155 (3%)

Query  1    MTETTPAPQ----TPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSL  56
            MTET+ A +    TPAA    ++SFV ER IQTVGRRKEAVVRVRLV GTGKFDLNGRSL
Sbjct  1    MTETSEAVEIAVGTPAAKH--SESFVFERSIQTVGRRKEAVVRVRLVLGTGKFDLNGRSL  58

Query  57   EDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDR  116
            EDYFPNKVHQQLIKAPLVTV+R  +FDIFA L GGGPSGQAGALRLGIARALIL SPEDR
Sbjct  59   EDYFPNKVHQQLIKAPLVTVERTRNFDIFALLHGGGPSGQAGALRLGIARALILASPEDR  118

Query  117  PALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            PALKKAGFLTRDPR+TERKKYGLKKARKAPQYSKR
Sbjct  119  PALKKAGFLTRDPRSTERKKYGLKKARKAPQYSKR  153


>gi|118616640|ref|YP_904972.1| 30S ribosomal protein S9 [Mycobacterium ulcerans Agy99]
 gi|166229578|sp|A0PMD2.1|RS9_MYCUA RecName: Full=30S ribosomal protein S9
 gi|118568750|gb|ABL03501.1| ribosomal protein S9, RpsI [Mycobacterium ulcerans Agy99]
Length=152

 Score =  248 bits (634),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 127/152 (84%), Positives = 135/152 (89%), Gaps = 1/152 (0%)

Query  1    MTETTPAPQTPAAPAGP-AQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDY  59
            MTETTP  +         ++SFV ERPIQTVGRRKEAVVRVRLVPG+GKFDLNGRSLE Y
Sbjct  1    MTETTPEVEVAVEAEVTYSESFVFERPIQTVGRRKEAVVRVRLVPGSGKFDLNGRSLEAY  60

Query  60   FPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPAL  119
            FPNKVHQQLIKAPLVTVDR+ES+DIFA L GGGPSGQAGALRLGIARALI+ +PEDRPAL
Sbjct  61   FPNKVHQQLIKAPLVTVDRLESYDIFALLHGGGPSGQAGALRLGIARALIVANPEDRPAL  120

Query  120  KKAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            KKA FLTRDPRATERKKYGLKKARKAPQYSKR
Sbjct  121  KKACFLTRDPRATERKKYGLKKARKAPQYSKR  152


>gi|118468477|ref|YP_885937.1| 30S ribosomal protein S9 [Mycobacterium smegmatis str. MC2 155]
 gi|166229574|sp|A0QSP9.1|RS9_MYCS2 RecName: Full=30S ribosomal protein S9
 gi|118169764|gb|ABK70660.1| ribosomal protein S9 [Mycobacterium smegmatis str. MC2 155]
Length=150

 Score =  241 bits (616),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 120/151 (80%), Positives = 133/151 (89%), Gaps = 1/151 (0%)

Query  1    MTETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYF  60
            MT+ T   +     A P +  +++RPIQTVGRRKEAVVRVRLVPGTG+F+L+GR+LE+YF
Sbjct  1    MTDVTET-EVVTESAEPREPVIIDRPIQTVGRRKEAVVRVRLVPGTGQFNLDGRTLENYF  59

Query  61   PNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALK  120
            PNKVHQQLIKAPLVTVDRV+ FDI+AHL GGGPSGQAGALRL IARALILV PEDRPALK
Sbjct  60   PNKVHQQLIKAPLVTVDRVDQFDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALK  119

Query  121  KAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            KAGFLTRDPRA ERKKYGLKKARKAPQYSKR
Sbjct  120  KAGFLTRDPRAIERKKYGLKKARKAPQYSKR  150


>gi|145225525|ref|YP_001136203.1| 30S ribosomal protein S9 [Mycobacterium gilvum PYR-GCK]
 gi|315445878|ref|YP_004078757.1| 30S ribosomal protein S9P [Mycobacterium sp. Spyr1]
 gi|145218011|gb|ABP47415.1| SSU ribosomal protein S9P [Mycobacterium gilvum PYR-GCK]
 gi|315264181|gb|ADU00923.1| SSU ribosomal protein S9P [Mycobacterium sp. Spyr1]
Length=171

 Score =  241 bits (614),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 122/150 (82%), Positives = 130/150 (87%), Gaps = 3/150 (2%)

Query  2    TETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFP  61
            TET  A    AAP  P    +++RPIQTVGRRKEAVVRVRLVPGTG+F L+GRSLE YFP
Sbjct  25   TETETAADEYAAPREPV---IIDRPIQTVGRRKEAVVRVRLVPGTGQFHLDGRSLESYFP  81

Query  62   NKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKK  121
            NKVHQQLIKAPLV VDR+E FDI+AHL GGGPSGQAGALRL IARALILV PEDRPALK+
Sbjct  82   NKVHQQLIKAPLVLVDRLEQFDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKR  141

Query  122  AGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            AGFLTRDPRA ERKKYGLKKARKAPQYSKR
Sbjct  142  AGFLTRDPRAIERKKYGLKKARKAPQYSKR  171


>gi|120402479|ref|YP_952308.1| 30S ribosomal protein S9 [Mycobacterium vanbaalenii PYR-1]
 gi|119955297|gb|ABM12302.1| SSU ribosomal protein S9P [Mycobacterium vanbaalenii PYR-1]
Length=171

 Score =  240 bits (613),  Expect = 5e-62, Method: Compositional matrix adjust.
 Identities = 117/135 (87%), Positives = 127/135 (95%), Gaps = 0/135 (0%)

Query  17   PAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTV  76
            P +  +++RPIQTVGRRKEAVVRVRLVPGTG+F+L+GR+LE+YFPNKVHQQLIKAPLVTV
Sbjct  37   PREPVIIDRPIQTVGRRKEAVVRVRLVPGTGQFNLDGRTLENYFPNKVHQQLIKAPLVTV  96

Query  77   DRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKK  136
            DRVE FDI+AHL GGGPSGQAGALRL IARALILV PEDRPALKKAGFLTRDPRA ERKK
Sbjct  97   DRVEQFDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKKAGFLTRDPRAIERKK  156

Query  137  YGLKKARKAPQYSKR  151
            YGLKKARKAPQYSKR
Sbjct  157  YGLKKARKAPQYSKR  171


>gi|108798103|ref|YP_638300.1| 30S ribosomal protein S9 [Mycobacterium sp. MCS]
 gi|119867199|ref|YP_937151.1| 30S ribosomal protein S9 [Mycobacterium sp. KMS]
 gi|126433761|ref|YP_001069452.1| 30S ribosomal protein S9 [Mycobacterium sp. JLS]
 6 more sequence titles
 Length=158

 Score =  239 bits (609),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 118/143 (83%), Positives = 128/143 (90%), Gaps = 0/143 (0%)

Query  9    QTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQL  68
            +  AA   P +   ++RPIQTVGRRKEAVVRVRLVPGTGKF+L+GR+LE YFPNKVHQQL
Sbjct  16   EATAADVEPREPVYIDRPIQTVGRRKEAVVRVRLVPGTGKFNLDGRTLEAYFPNKVHQQL  75

Query  69   IKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRD  128
            IKAPLV VDR+ESFD++AHL GGGPSGQAGALRL IARALILV PEDRPALKKAGFLTRD
Sbjct  76   IKAPLVLVDRLESFDVYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKKAGFLTRD  135

Query  129  PRATERKKYGLKKARKAPQYSKR  151
            PRA ERKKYGLKKARKAPQYSKR
Sbjct  136  PRAIERKKYGLKKARKAPQYSKR  158


>gi|342861883|ref|ZP_08718528.1| 30S ribosomal protein S9 [Mycobacterium colombiense CECT 3035]
 gi|342130700|gb|EGT84004.1| 30S ribosomal protein S9 [Mycobacterium colombiense CECT 3035]
Length=179

 Score =  239 bits (609),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 128/179 (72%), Positives = 135/179 (76%), Gaps = 28/179 (15%)

Query  1    MTETTPAPQTPAAPAGPAQS----------------------------FVLERPIQTVGR  32
            MTETT A + P  P  P  +                            FV +RPIQTVGR
Sbjct  1    MTETTEAVENPENPDTPEVAETVEETVAAAEETEAPVEAAAAPAPAEPFVFDRPIQTVGR  60

Query  33   RKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGG  92
            RKEAVVRVRLVPGTGKF+LNGR+LE YFPNKVHQQLIKAPLVTVDRV+SFDI+A L GGG
Sbjct  61   RKEAVVRVRLVPGTGKFNLNGRTLEGYFPNKVHQQLIKAPLVTVDRVDSFDIYALLHGGG  120

Query  93   PSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            PSGQAGALRLGIARALIL  PEDRP LKKAGFLTRDPRATERKKYGLKKARKAPQYSKR
Sbjct  121  PSGQAGALRLGIARALILAQPEDRPPLKKAGFLTRDPRATERKKYGLKKARKAPQYSKR  179


>gi|336441182|gb|AEI54816.1| 30S ribosomal protein S9 [Mycobacterium franklinii]
Length=173

 Score =  238 bits (606),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 119/140 (85%), Positives = 128/140 (92%), Gaps = 3/140 (2%)

Query  12   AAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKA  71
            AAP GP    V+++PIQTVGRRKEAVVRVRLVPGTGKF L+GRSLE+YFPNKVHQQLIKA
Sbjct  37   AAPRGP---VVIDKPIQTVGRRKEAVVRVRLVPGTGKFHLDGRSLEEYFPNKVHQQLIKA  93

Query  72   PLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRA  131
            PLV+V+RV+S DIFAHL GGGPSGQAGALRL IARALI+V PEDRP LKKAGFLTRDPRA
Sbjct  94   PLVSVNRVDSVDIFAHLTGGGPSGQAGALRLAIARALIIVEPEDRPVLKKAGFLTRDPRA  153

Query  132  TERKKYGLKKARKAPQYSKR  151
             ERKKYGLKKARKAPQYSKR
Sbjct  154  IERKKYGLKKARKAPQYSKR  173


>gi|336441186|gb|AEI54818.1| 30S ribosomal protein S9 [Mycobacterium chelonae]
Length=177

 Score =  237 bits (605),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 117/140 (84%), Positives = 128/140 (92%), Gaps = 3/140 (2%)

Query  12   AAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKA  71
            AAP GP    V+++PIQTVGRRKEAVVRVRLVPGTGKF L+GR+LE+YFPNKVHQQLIKA
Sbjct  41   AAPRGP---VVIDKPIQTVGRRKEAVVRVRLVPGTGKFHLDGRTLEEYFPNKVHQQLIKA  97

Query  72   PLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRA  131
            PLV+V+RV+S DI+AHL GGGPSGQAGALRL IARALI+V PEDRP LKKAGFLTRDPRA
Sbjct  98   PLVSVNRVDSVDIYAHLSGGGPSGQAGALRLAIARALIIVEPEDRPVLKKAGFLTRDPRA  157

Query  132  TERKKYGLKKARKAPQYSKR  151
             ERKKYGLKKARKAPQYSKR
Sbjct  158  IERKKYGLKKARKAPQYSKR  177


>gi|336441184|gb|AEI54817.1| 30S ribosomal protein S9 [Mycobacterium bolletii]
Length=174

 Score =  237 bits (604),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 118/140 (85%), Positives = 128/140 (92%), Gaps = 3/140 (2%)

Query  12   AAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKA  71
            AAP GP    V+++PIQTVGRRKEAVVRVRLVPGTGKF L+GRSLE+YFPNKVHQQLIKA
Sbjct  38   AAPRGP---VVIDKPIQTVGRRKEAVVRVRLVPGTGKFHLDGRSLEEYFPNKVHQQLIKA  94

Query  72   PLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRA  131
            PLV+V+RV+S DI+AHL GGGPSGQAGALRL IARALI+V PEDRP LKKAGFLTRDPRA
Sbjct  95   PLVSVNRVDSVDIYAHLTGGGPSGQAGALRLAIARALIIVEPEDRPVLKKAGFLTRDPRA  154

Query  132  TERKKYGLKKARKAPQYSKR  151
             ERKKYGLKKARKAPQYSKR
Sbjct  155  IERKKYGLKKARKAPQYSKR  174


>gi|336441190|gb|AEI54820.1| 30S ribosomal protein S9 [Mycobacterium massiliense]
Length=175

 Score =  237 bits (604),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 118/140 (85%), Positives = 128/140 (92%), Gaps = 3/140 (2%)

Query  12   AAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKA  71
            AAP GP    V+++PIQTVGRRKEAVVRVRLVPGTGKF L+GRSLE+YFPNKVHQQLIKA
Sbjct  39   AAPRGP---VVIDKPIQTVGRRKEAVVRVRLVPGTGKFHLDGRSLEEYFPNKVHQQLIKA  95

Query  72   PLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRA  131
            PLV+V+RV+S DI+AHL GGGPSGQAGALRL IARALI+V PEDRP LKKAGFLTRDPRA
Sbjct  96   PLVSVNRVDSVDIYAHLTGGGPSGQAGALRLAIARALIIVEPEDRPVLKKAGFLTRDPRA  155

Query  132  TERKKYGLKKARKAPQYSKR  151
             ERKKYGLKKARKAPQYSKR
Sbjct  156  IERKKYGLKKARKAPQYSKR  175


>gi|169630830|ref|YP_001704479.1| 30s ribosomal protein S9 [Mycobacterium abscessus ATCC 19977]
 gi|169242797|emb|CAM63825.1| 30s ribosomal protein S9 [Mycobacterium abscessus]
 gi|336441180|gb|AEI54815.1| 30S ribosomal protein S9 [Mycobacterium abscessus]
Length=175

 Score =  237 bits (604),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 118/140 (85%), Positives = 128/140 (92%), Gaps = 3/140 (2%)

Query  12   AAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKA  71
            AAP GP    V+++PIQTVGRRKEAVVRVRLVPGTGKF L+GRSLE+YFPNKVHQQLIKA
Sbjct  39   AAPRGP---VVIDKPIQTVGRRKEAVVRVRLVPGTGKFHLDGRSLEEYFPNKVHQQLIKA  95

Query  72   PLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRA  131
            PLV+V+RV+S DI+AHL GGGPSGQAGALRL IARALI+V PEDRP LKKAGFLTRDPRA
Sbjct  96   PLVSVNRVDSVDIYAHLTGGGPSGQAGALRLAIARALIIVEPEDRPVLKKAGFLTRDPRA  155

Query  132  TERKKYGLKKARKAPQYSKR  151
             ERKKYGLKKARKAPQYSKR
Sbjct  156  IERKKYGLKKARKAPQYSKR  175


>gi|336441188|gb|AEI54819.1| 30S ribosomal protein S9 [Mycobacterium immunogenum]
Length=173

 Score =  234 bits (596),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 116/140 (83%), Positives = 127/140 (91%), Gaps = 3/140 (2%)

Query  12   AAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKA  71
            AAP GP    ++++PIQTVGRRKEAVVRVRLVPGTGKF L+GRSLE+YFPNKVHQQLIKA
Sbjct  37   AAPRGP---VIIDKPIQTVGRRKEAVVRVRLVPGTGKFHLDGRSLEEYFPNKVHQQLIKA  93

Query  72   PLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRA  131
            PLV+V+R +S DI+AHL GGGPSGQAGALRL IARALI+V PEDRP LKKAGFLTRDPRA
Sbjct  94   PLVSVNRADSVDIYAHLTGGGPSGQAGALRLAIARALIIVEPEDRPVLKKAGFLTRDPRA  153

Query  132  TERKKYGLKKARKAPQYSKR  151
             ERKKYGLKKARKAPQYSKR
Sbjct  154  IERKKYGLKKARKAPQYSKR  173


>gi|326381864|ref|ZP_08203557.1| 30S ribosomal protein S9 [Gordonia neofelifaecis NRRL B-59395]
 gi|326199290|gb|EGD56471.1| 30S ribosomal protein S9 [Gordonia neofelifaecis NRRL B-59395]
Length=173

 Score =  234 bits (596),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 119/150 (80%), Positives = 127/150 (85%), Gaps = 3/150 (2%)

Query  2    TETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFP  61
            TE+    +T A   GP    VL+RPIQTVGRRKEAVVRVRLVPGTG+F LNGR+LEDYFP
Sbjct  27   TESVEVVETEAVTRGP---VVLDRPIQTVGRRKEAVVRVRLVPGTGEFTLNGRTLEDYFP  83

Query  62   NKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKK  121
            NKVHQQLIKAPLVTV+R ++FDI A L GGGPSGQAGALRL IAR LI VSPEDRPALKK
Sbjct  84   NKVHQQLIKAPLVTVERTDAFDIHARLVGGGPSGQAGALRLAIARGLIEVSPEDRPALKK  143

Query  122  AGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            AGFLTRD RA ERKKYGLKKARKA QYSKR
Sbjct  144  AGFLTRDARAVERKKYGLKKARKASQYSKR  173


>gi|262201641|ref|YP_003272849.1| 30S ribosomal protein S9 [Gordonia bronchialis DSM 43247]
 gi|262084988|gb|ACY20956.1| ribosomal protein S9 [Gordonia bronchialis DSM 43247]
Length=161

 Score =  231 bits (590),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 121/150 (81%), Positives = 129/150 (86%), Gaps = 4/150 (2%)

Query  3    ETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNG-RSLEDYFP  61
            +TT     PA   GP    V++RPIQTVGRRKEAVVRVRLVPG+G+F LNG RSLE+YFP
Sbjct  15   DTTAVAAEPAVDRGP---VVIDRPIQTVGRRKEAVVRVRLVPGSGQFTLNGARSLEEYFP  71

Query  62   NKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKK  121
            NKVHQQLIKAPLVTV+RVESFDI A L GGGPSGQAGALRL IARALI V+PEDRPALKK
Sbjct  72   NKVHQQLIKAPLVTVERVESFDIHAKLVGGGPSGQAGALRLAIARALIEVTPEDRPALKK  131

Query  122  AGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            AGFLTRDPRA ERKKYGLKKARKA QYSKR
Sbjct  132  AGFLTRDPRAVERKKYGLKKARKASQYSKR  161


>gi|54022834|ref|YP_117076.1| 30S ribosomal protein S9 [Nocardia farcinica IFM 10152]
 gi|81680277|sp|Q5Z1H9.1|RS9_NOCFA RecName: Full=30S ribosomal protein S9
 gi|54014342|dbj|BAD55712.1| putative ribosomal protein S9 [Nocardia farcinica IFM 10152]
Length=167

 Score =  231 bits (590),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 113/130 (87%), Positives = 123/130 (95%), Gaps = 0/130 (0%)

Query  22   VLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVES  81
            V++RP+QTVGRRKEAVVRVRLVPGTG+F LNGRS+EDYFPNKVHQQL+K+PLVTV+R ES
Sbjct  38   VIDRPVQTVGRRKEAVVRVRLVPGTGQFVLNGRSIEDYFPNKVHQQLVKSPLVTVERTES  97

Query  82   FDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKK  141
            FDI A L GGGPSGQAGALRL IARALI V+PEDRPALK+AGFLTRDPRATERKKYGLKK
Sbjct  98   FDIHARLVGGGPSGQAGALRLAIARALIEVTPEDRPALKRAGFLTRDPRATERKKYGLKK  157

Query  142  ARKAPQYSKR  151
            ARKAPQYSKR
Sbjct  158  ARKAPQYSKR  167


>gi|296138600|ref|YP_003645843.1| 30S ribosomal protein S9 [Tsukamurella paurometabola DSM 20162]
 gi|296026734|gb|ADG77504.1| ribosomal protein S9 [Tsukamurella paurometabola DSM 20162]
Length=167

 Score =  228 bits (582),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 114/148 (78%), Positives = 125/148 (85%), Gaps = 0/148 (0%)

Query  4    TTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNK  63
            T+  P+  A    P    V+ERPIQTVGRRKEAVVRVRL  GTG F LNGR++EDYFPNK
Sbjct  20   TSETPEATAETRAPRGPVVVERPIQTVGRRKEAVVRVRLTAGTGNFVLNGRTIEDYFPNK  79

Query  64   VHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAG  123
            +HQQL+K PLVTV+R+ESFDI A+L GGGPSGQAGALRL IARALI VSPEDRPALK+AG
Sbjct  80   LHQQLVKDPLVTVERLESFDIAANLTGGGPSGQAGALRLAIARALIEVSPEDRPALKRAG  139

Query  124  FLTRDPRATERKKYGLKKARKAPQYSKR  151
            FLTRDPRA ERKKYGLKKARKA QYSKR
Sbjct  140  FLTRDPRAVERKKYGLKKARKASQYSKR  167


>gi|343925126|ref|ZP_08764658.1| 30S ribosomal protein S9 [Gordonia alkanivorans NBRC 16433]
 gi|343765057|dbj|GAA11584.1| 30S ribosomal protein S9 [Gordonia alkanivorans NBRC 16433]
Length=179

 Score =  228 bits (582),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 113/131 (87%), Positives = 121/131 (93%), Gaps = 0/131 (0%)

Query  21   FVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVE  80
             V++RPIQTVGRRKEAVVRVRL+PGTG+F LNGRSLE+YFPNKVHQQLIKAPLV V+R E
Sbjct  49   IVIDRPIQTVGRRKEAVVRVRLMPGTGEFKLNGRSLEEYFPNKVHQQLIKAPLVLVERTE  108

Query  81   SFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLK  140
            SFDIFA L GGGPSGQAGALRL IARALI V+P+DRPALKKAGFLTRDPRA ERKKYGLK
Sbjct  109  SFDIFAKLVGGGPSGQAGALRLAIARALIEVTPDDRPALKKAGFLTRDPRAVERKKYGLK  168

Query  141  KARKAPQYSKR  151
            KARKA QYSKR
Sbjct  169  KARKASQYSKR  179


>gi|111023134|ref|YP_706106.1| 30S ribosomal protein S9 [Rhodococcus jostii RHA1]
 gi|110822664|gb|ABG97948.1| 30S ribosomal protein S9 [Rhodococcus jostii RHA1]
Length=178

 Score =  228 bits (580),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 113/139 (82%), Positives = 120/139 (87%), Gaps = 0/139 (0%)

Query  13   APAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAP  72
            A A P    V++RPIQTVGRRKEAVVRVRL PG+G F LNGR++EDYFPNKVHQQLIKAP
Sbjct  40   AAAAPQAPIVIDRPIQTVGRRKEAVVRVRLTPGSGDFKLNGRTIEDYFPNKVHQQLIKAP  99

Query  73   LVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRAT  132
            LVTV+R ESFDI A L GGGPSGQAGALRL IARALI V+PEDRPALK AGFLTRD RA 
Sbjct  100  LVTVERAESFDIVALLHGGGPSGQAGALRLAIARALIEVTPEDRPALKSAGFLTRDARAV  159

Query  133  ERKKYGLKKARKAPQYSKR  151
            ERKKYGLKKARKA QYSKR
Sbjct  160  ERKKYGLKKARKASQYSKR  178


>gi|226365640|ref|YP_002783423.1| 30S ribosomal protein S9 [Rhodococcus opacus B4]
 gi|254766319|sp|C1B057.1|RS9_RHOOB RecName: Full=30S ribosomal protein S9
 gi|226244130|dbj|BAH54478.1| 30S ribosomal protein S9 [Rhodococcus opacus B4]
Length=170

 Score =  227 bits (578),  Expect = 4e-58, Method: Compositional matrix adjust.
 Identities = 113/139 (82%), Positives = 120/139 (87%), Gaps = 0/139 (0%)

Query  13   APAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAP  72
            A A P    V++RPIQTVGRRKEAVVRVRL PG+G F LNGR++EDYFPNKVHQQLIKAP
Sbjct  32   AAAAPQAPIVIDRPIQTVGRRKEAVVRVRLTPGSGDFKLNGRTIEDYFPNKVHQQLIKAP  91

Query  73   LVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRAT  132
            LVTV+R ESFDI A L GGGPSGQAGALRL IARALI V+PEDRPALK AGFLTRD RA 
Sbjct  92   LVTVERAESFDIVALLHGGGPSGQAGALRLAIARALIEVTPEDRPALKSAGFLTRDARAV  151

Query  133  ERKKYGLKKARKAPQYSKR  151
            ERKKYGLKKARKA QYSKR
Sbjct  152  ERKKYGLKKARKASQYSKR  170


>gi|312140873|ref|YP_004008209.1| 30S ribosomal protein s9 rpsi [Rhodococcus equi 103S]
 gi|325675489|ref|ZP_08155173.1| 30S ribosomal protein S9 [Rhodococcus equi ATCC 33707]
 gi|311890212|emb|CBH49530.1| 30S ribosomal protein S9 RpsI [Rhodococcus equi 103S]
 gi|325553460|gb|EGD23138.1| 30S ribosomal protein S9 [Rhodococcus equi ATCC 33707]
Length=168

 Score =  225 bits (573),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 114/150 (76%), Positives = 125/150 (84%), Gaps = 3/150 (2%)

Query  2    TETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFP  61
            +E+  A    AAP  P    V++RP+QTVGRRKEAVVRVRL PGTG+F LNGR+LEDYFP
Sbjct  22   SESEAAEVYEAAPQAP---IVIDRPVQTVGRRKEAVVRVRLTPGTGEFKLNGRTLEDYFP  78

Query  62   NKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKK  121
            NKVHQQLIKAPLV V+R ESFDI A L GGGPSGQAGALRL I+RALI V+ EDRPALK+
Sbjct  79   NKVHQQLIKAPLVLVERAESFDITALLTGGGPSGQAGALRLAISRALIEVTAEDRPALKR  138

Query  122  AGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            AGFLTRD RA ERKKYGLKKARKA QYSKR
Sbjct  139  AGFLTRDARAVERKKYGLKKARKASQYSKR  168


>gi|226305394|ref|YP_002765352.1| 30S ribosomal protein S9 [Rhodococcus erythropolis PR4]
 gi|259495452|sp|C0ZW78.1|RS9_RHOE4 RecName: Full=30S ribosomal protein S9
 gi|226184509|dbj|BAH32613.1| 30S ribosomal protein S9 [Rhodococcus erythropolis PR4]
Length=170

 Score =  221 bits (563),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 109/131 (84%), Positives = 118/131 (91%), Gaps = 0/131 (0%)

Query  21   FVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVE  80
             VL+RP+QTVGRRKEAVVRVR+ PGTG+F LNGR+LEDYFPNKVHQQLIKAPLV V+R E
Sbjct  40   IVLDRPVQTVGRRKEAVVRVRMTPGTGQFKLNGRTLEDYFPNKVHQQLIKAPLVLVERPE  99

Query  81   SFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLK  140
            SFDI A L GGGPSGQAGALRL IARALI V+P+DRPALK+AGFLTRD RA ERKKYGLK
Sbjct  100  SFDIIALLHGGGPSGQAGALRLAIARALIEVTPDDRPALKRAGFLTRDARAVERKKYGLK  159

Query  141  KARKAPQYSKR  151
            KARKA QYSKR
Sbjct  160  KARKASQYSKR  170


>gi|333921703|ref|YP_004495284.1| 30S ribosomal protein S9 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333483924|gb|AEF42484.1| 30S ribosomal protein S9 [Amycolicicoccus subflavus DQS3-9A1]
Length=197

 Score =  221 bits (562),  Expect = 4e-56, Method: Compositional matrix adjust.
 Identities = 111/129 (87%), Positives = 118/129 (92%), Gaps = 0/129 (0%)

Query  23   LERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESF  82
            L+RPIQTVGRRKEAVVRVRL+PG+G F LNGRSLE YFPNKVHQQ+IKAPLVTVDR  +F
Sbjct  69   LDRPIQTVGRRKEAVVRVRLLPGSGDFKLNGRSLEAYFPNKVHQQIIKAPLVTVDREVAF  128

Query  83   DIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKA  142
            DI A L GGGPSGQAGALRL IARALI V+P+DRPALKKAGFLTRD RATERKKYGLKKA
Sbjct  129  DIHARLHGGGPSGQAGALRLAIARALIEVTPDDRPALKKAGFLTRDARATERKKYGLKKA  188

Query  143  RKAPQYSKR  151
            RKAPQYSKR
Sbjct  189  RKAPQYSKR  197


>gi|229489395|ref|ZP_04383258.1| ribosomal protein S9 [Rhodococcus erythropolis SK121]
 gi|229323492|gb|EEN89250.1| ribosomal protein S9 [Rhodococcus erythropolis SK121]
Length=161

 Score =  220 bits (561),  Expect = 4e-56, Method: Compositional matrix adjust.
 Identities = 109/131 (84%), Positives = 118/131 (91%), Gaps = 0/131 (0%)

Query  21   FVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVE  80
             VL+RP+QTVGRRKEAVVRVR+ PGTG+F LNGR+LEDYFPNKVHQQLIKAPLV V+R E
Sbjct  31   IVLDRPVQTVGRRKEAVVRVRMAPGTGQFKLNGRTLEDYFPNKVHQQLIKAPLVLVERPE  90

Query  81   SFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLK  140
            SFDI A L GGGPSGQAGALRL IARALI V+P+DRPALK+AGFLTRD RA ERKKYGLK
Sbjct  91   SFDIIALLHGGGPSGQAGALRLAIARALIEVTPDDRPALKRAGFLTRDARAVERKKYGLK  150

Query  141  KARKAPQYSKR  151
            KARKA QYSKR
Sbjct  151  KARKASQYSKR  161


>gi|291003847|ref|ZP_06561820.1| 30S ribosomal protein S9 [Saccharopolyspora erythraea NRRL 2338]
Length=162

 Score =  211 bits (538),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 109/152 (72%), Positives = 119/152 (79%), Gaps = 4/152 (2%)

Query  4    TTPAPQTPAAPAGPAQSFVLE----RPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDY  59
            T PA + PA    P    +      RP+QTVGRRKEAVVRVRLVPG G F LNG+SLE Y
Sbjct  11   TAPADEAPAVEDAPVAEDIAPVPAGRPVQTVGRRKEAVVRVRLVPGNGGFKLNGKSLEQY  70

Query  60   FPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPAL  119
            FPNKVHQQLIK PLVTV+RVESFD+ A L GGGPSGQAGALR+ IARAL+ +  +DRPAL
Sbjct  71   FPNKVHQQLIKEPLVTVERVESFDVAATLRGGGPSGQAGALRMAIARALVELDADDRPAL  130

Query  120  KKAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            KKAG LTRD R  ERKKYGLKKARKAPQYSKR
Sbjct  131  KKAGMLTRDSREKERKKYGLKKARKAPQYSKR  162


>gi|333991908|ref|YP_004524522.1| 30S ribosomal protein S9 RpsI [Mycobacterium sp. JDM601]
 gi|333487876|gb|AEF37268.1| ribosomal protein S9 RpsI [Mycobacterium sp. JDM601]
Length=168

 Score =  211 bits (537),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 122/154 (80%), Positives = 134/154 (88%), Gaps = 3/154 (1%)

Query  1    MTETTPAPQTPAAPAGPAQSFV---LERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLE  57
            +TE   A +T A  A  A ++    L RPIQTVGRRKEAVVRVRLVPGTGKF+L+GR+LE
Sbjct  15   VTEAVEADETVAVQADAAPAYEPHDLGRPIQTVGRRKEAVVRVRLVPGTGKFNLDGRTLE  74

Query  58   DYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRP  117
             YFPNKVHQQLIKAPLVTVDR++SFD++AHL GGGPSGQAGALRL +ARALILV PEDRP
Sbjct  75   AYFPNKVHQQLIKAPLVTVDRLDSFDVYAHLDGGGPSGQAGALRLALARALILVQPEDRP  134

Query  118  ALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
             LKKAGFLTRDPRATERKKYGLKKARKAPQYSKR
Sbjct  135  VLKKAGFLTRDPRATERKKYGLKKARKAPQYSKR  168


>gi|300782658|ref|YP_003762949.1| 30S ribosomal protein S9 [Amycolatopsis mediterranei U32]
 gi|299792172|gb|ADJ42547.1| small subunit ribosomal protein S9 [Amycolatopsis mediterranei 
U32]
 gi|340524029|gb|AEK39234.1| 30S ribosomal protein S9 [Amycolatopsis mediterranei S699]
Length=187

 Score =  211 bits (537),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 104/124 (84%), Positives = 113/124 (92%), Gaps = 0/124 (0%)

Query  28   QTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAH  87
            QTVGRRKEAVVRVR+VPGTG+F LNGR+LE+YFPNKVHQQLIK PLV V++ +SFDIFA+
Sbjct  64   QTVGRRKEAVVRVRVVPGTGQFKLNGRTLEEYFPNKVHQQLIKDPLVLVEKPDSFDIFAN  123

Query  88   LGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQ  147
            L GGG SGQAGALRL IARALI V  +DRPALKKAGFLTRD RATERKKYGLKKARKAPQ
Sbjct  124  LHGGGVSGQAGALRLAIARALIEVDADDRPALKKAGFLTRDARATERKKYGLKKARKAPQ  183

Query  148  YSKR  151
            YSKR
Sbjct  184  YSKR  187


>gi|134103209|ref|YP_001108870.1| 30S ribosomal protein S9 [Saccharopolyspora erythraea NRRL 2338]
 gi|166229599|sp|A4FPH0.1|RS9_SACEN RecName: Full=30S ribosomal protein S9
 gi|133915832|emb|CAM05945.1| 30S ribosomal protein S9 [Saccharopolyspora erythraea NRRL 2338]
Length=153

 Score =  211 bits (536),  Expect = 4e-53, Method: Compositional matrix adjust.
 Identities = 109/152 (72%), Positives = 119/152 (79%), Gaps = 4/152 (2%)

Query  4    TTPAPQTPAAPAGPAQSFVLE----RPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDY  59
            T PA + PA    P    +      RP+QTVGRRKEAVVRVRLVPG G F LNG+SLE Y
Sbjct  2    TAPADEAPAVEDAPVAEDIAPVPAGRPVQTVGRRKEAVVRVRLVPGNGGFKLNGKSLEQY  61

Query  60   FPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPAL  119
            FPNKVHQQLIK PLVTV+RVESFD+ A L GGGPSGQAGALR+ IARAL+ +  +DRPAL
Sbjct  62   FPNKVHQQLIKEPLVTVERVESFDVAATLRGGGPSGQAGALRMAIARALVELDADDRPAL  121

Query  120  KKAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            KKAG LTRD R  ERKKYGLKKARKAPQYSKR
Sbjct  122  KKAGMLTRDSREKERKKYGLKKARKAPQYSKR  153


>gi|302524042|ref|ZP_07276384.1| ribosomal protein S9 [Streptomyces sp. AA4]
 gi|302432937|gb|EFL04753.1| ribosomal protein S9 [Streptomyces sp. AA4]
Length=162

 Score =  210 bits (534),  Expect = 6e-53, Method: Compositional matrix adjust.
 Identities = 103/124 (84%), Positives = 113/124 (92%), Gaps = 0/124 (0%)

Query  28   QTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAH  87
            QTVGRRKEAVVRVR+VPGTG+F LNG+SLE YFPNKVHQQLI+ PLVTV++ +SFDIFA+
Sbjct  39   QTVGRRKEAVVRVRVVPGTGEFKLNGKSLEQYFPNKVHQQLIREPLVTVEKPDSFDIFAN  98

Query  88   LGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQ  147
            L GGG SGQAGALRL IARAL+ V  +DRPALKKAGFLTRD RATERKKYGLKKARKAPQ
Sbjct  99   LKGGGISGQAGALRLAIARALVEVDADDRPALKKAGFLTRDARATERKKYGLKKARKAPQ  158

Query  148  YSKR  151
            YSKR
Sbjct  159  YSKR  162


>gi|284992834|ref|YP_003411388.1| 30S ribosomal protein S9 [Geodermatophilus obscurus DSM 43160]
 gi|284066079|gb|ADB77017.1| ribosomal protein S9 [Geodermatophilus obscurus DSM 43160]
Length=139

 Score =  209 bits (532),  Expect = 1e-52, Method: Compositional matrix adjust.
 Identities = 101/127 (80%), Positives = 112/127 (89%), Gaps = 0/127 (0%)

Query  25   RPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDI  84
            RP+QTVGRRKEA+VRVRL+PGTG+F LNGR++E+YFPNKVHQQLI+ P VTV+R E +D+
Sbjct  13   RPVQTVGRRKEAIVRVRLLPGTGQFRLNGRTIEEYFPNKVHQQLIREPFVTVERTEQYDV  72

Query  85   FAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARK  144
               L GGG SGQAGALRL IARALI V  EDRPALKKAGFLTRDPR TERKKYGLKKARK
Sbjct  73   VGILRGGGVSGQAGALRLAIARALIAVEAEDRPALKKAGFLTRDPRVTERKKYGLKKARK  132

Query  145  APQYSKR  151
            APQYSKR
Sbjct  133  APQYSKR  139


>gi|257054516|ref|YP_003132348.1| 30S ribosomal protein S9P [Saccharomonospora viridis DSM 43017]
 gi|256584388|gb|ACU95521.1| SSU ribosomal protein S9P [Saccharomonospora viridis DSM 43017]
Length=162

 Score =  208 bits (529),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 101/124 (82%), Positives = 110/124 (89%), Gaps = 0/124 (0%)

Query  28   QTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAH  87
            QTVGRRKEAVVRVR+VPGTG+F LNG+SLE YFPNKVHQQLI+ PLVTV++ ESFD+ A 
Sbjct  39   QTVGRRKEAVVRVRMVPGTGEFRLNGKSLEQYFPNKVHQQLIREPLVTVEKAESFDVHAR  98

Query  88   LGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQ  147
            L GGG SGQAGALRL IARAL  +  +DRPALKKAGFLTRD RATERKKYGLKKARKAPQ
Sbjct  99   LHGGGISGQAGALRLAIARALAEIDSDDRPALKKAGFLTRDARATERKKYGLKKARKAPQ  158

Query  148  YSKR  151
            YSKR
Sbjct  159  YSKR  162


>gi|331699124|ref|YP_004335363.1| 30S ribosomal protein S9 [Pseudonocardia dioxanivorans CB1190]
 gi|326953813|gb|AEA27510.1| ribosomal protein S9 [Pseudonocardia dioxanivorans CB1190]
Length=201

 Score =  207 bits (526),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 101/132 (77%), Positives = 114/132 (87%), Gaps = 0/132 (0%)

Query  20   SFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRV  79
            + +++RPIQTVGRRKEAVVRVRLV G+GKF LNG+ LE YFPNK+HQQLI+ PLVTV++ 
Sbjct  70   AVLIDRPIQTVGRRKEAVVRVRLVAGSGKFTLNGKPLETYFPNKLHQQLIREPLVTVEKT  129

Query  80   ESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGL  139
            E FDIFA+L GGG SGQAGALRL IARAL+    EDRP LK+AGFLTRD R TERKKYGL
Sbjct  130  ERFDIFANLHGGGISGQAGALRLAIARALVEADSEDRPPLKRAGFLTRDARVTERKKYGL  189

Query  140  KKARKAPQYSKR  151
            KKARKAPQYSKR
Sbjct  190  KKARKAPQYSKR  201


>gi|258651417|ref|YP_003200573.1| 30S ribosomal protein S9 [Nakamurella multipartita DSM 44233]
 gi|258554642|gb|ACV77584.1| ribosomal protein S9 [Nakamurella multipartita DSM 44233]
Length=174

 Score =  206 bits (525),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 100/129 (78%), Positives = 113/129 (88%), Gaps = 0/129 (0%)

Query  23   LERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESF  82
            ++RP+QTVGRRKEA+VR+RL+PGTG+F LNGR L+ YFPNKVHQQLIK PLVTV++ E +
Sbjct  46   MDRPVQTVGRRKEAIVRIRLLPGTGEFTLNGRPLDSYFPNKVHQQLIKEPLVTVEKAEIY  105

Query  83   DIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKA  142
            D+ A L GGG +GQAGALRL IARALI V   DRPALKKAGFLTRD RATERKKYGLKKA
Sbjct  106  DVIARLHGGGVTGQAGALRLAIARALIEVDETDRPALKKAGFLTRDARATERKKYGLKKA  165

Query  143  RKAPQYSKR  151
            RKAPQYSKR
Sbjct  166  RKAPQYSKR  174


>gi|319948368|ref|ZP_08022510.1| 30S ribosomal protein S9 [Dietzia cinnamea P4]
 gi|319437966|gb|EFV92944.1| 30S ribosomal protein S9 [Dietzia cinnamea P4]
Length=180

 Score =  205 bits (521),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 102/126 (81%), Positives = 109/126 (87%), Gaps = 0/126 (0%)

Query  26   PIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIF  85
            P Q VGRRKEAV RVRL+PG+G+F LNGRSLEDYFPNKVHQQL+K+PLV V+R E FDI 
Sbjct  55   PAQAVGRRKEAVARVRLLPGSGQFTLNGRSLEDYFPNKVHQQLVKSPLVLVEREEQFDIV  114

Query  86   AHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKA  145
            A L GGGPSGQAGALRL IARAL   SP+DRPALKKAGFLTRD RA ERKK GLKKARKA
Sbjct  115  ALLHGGGPSGQAGALRLAIARALTQYSPDDRPALKKAGFLTRDARAVERKKAGLKKARKA  174

Query  146  PQYSKR  151
            PQYSKR
Sbjct  175  PQYSKR  180


>gi|296392778|ref|YP_003657662.1| 30S ribosomal protein S9 [Segniliparus rotundus DSM 44985]
 gi|296179925|gb|ADG96831.1| ribosomal protein S9 [Segniliparus rotundus DSM 44985]
Length=186

 Score =  202 bits (515),  Expect = 9e-51, Method: Compositional matrix adjust.
 Identities = 107/149 (72%), Positives = 116/149 (78%), Gaps = 2/149 (1%)

Query  3    ETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPN  62
            ET  A   PA    P + F  E  I TVGRRKEAVVR+RL  GTGKF LNGRSLE+YFPN
Sbjct  40   ETQGAGSAPAREKAPLREFTEE--IITVGRRKEAVVRLRLSLGTGKFTLNGRSLENYFPN  97

Query  63   KVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKA  122
            +VHQQL+K+PLV  DR  S D+ A L GGG SGQAGALRL ++RALI  SPEDRPALK A
Sbjct  98   RVHQQLVKSPLVHADREGSVDVRATLHGGGISGQAGALRLALSRALIEASPEDRPALKVA  157

Query  123  GFLTRDPRATERKKYGLKKARKAPQYSKR  151
            GFLTRD RATERKKYGLKKARKAPQYSKR
Sbjct  158  GFLTRDARATERKKYGLKKARKAPQYSKR  186


>gi|340795255|ref|YP_004760718.1| 30S ribosomal protein S9 [Corynebacterium variabile DSM 44702]
 gi|340535165|gb|AEK37645.1| 30S ribosomal protein S9 [Corynebacterium variabile DSM 44702]
Length=170

 Score =  197 bits (501),  Expect = 5e-49, Method: Compositional matrix adjust.
 Identities = 97/137 (71%), Positives = 112/137 (82%), Gaps = 0/137 (0%)

Query  15   AGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLV  74
            A PA + + E PIQTVGRRKEAVVR+R+V G+G+F  NGR+LEDYFPNK+HQQLIKAPLV
Sbjct  34   ATPAVADLYEGPIQTVGRRKEAVVRIRMVAGSGQFTCNGRTLEDYFPNKLHQQLIKAPLV  93

Query  75   TVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATER  134
             +DR   FD   +L GGGPSGQAGA+RL I+RAL   +PE+R ALKKAGFLTRD RA ER
Sbjct  94   LLDRENQFDFQVNLKGGGPSGQAGAMRLAISRALNKYNPEERAALKKAGFLTRDARAVER  153

Query  135  KKYGLKKARKAPQYSKR  151
            KK GL KAR+APQYSKR
Sbjct  154  KKAGLHKARRAPQYSKR  170


>gi|68536834|ref|YP_251539.1| 30S ribosomal protein S9 [Corynebacterium jeikeium K411]
 gi|260579193|ref|ZP_05847083.1| 30S ribosomal protein S9 [Corynebacterium jeikeium ATCC 43734]
 gi|68264433|emb|CAI37921.1| 30S ribosomal protein S9 [Corynebacterium jeikeium K411]
 gi|258602679|gb|EEW15966.1| 30S ribosomal protein S9 [Corynebacterium jeikeium ATCC 43734]
Length=186

 Score =  196 bits (499),  Expect = 7e-49, Method: Compositional matrix adjust.
 Identities = 98/134 (74%), Positives = 109/134 (82%), Gaps = 0/134 (0%)

Query  18   AQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVD  77
            A+  V E  IQTVGRRKEAVVRVR+VPG+G+F  NGRSLEDYFPNK+HQQLIKAPLV +D
Sbjct  53   AEPVVFEGTIQTVGRRKEAVVRVRMVPGSGEFLCNGRSLEDYFPNKLHQQLIKAPLVLLD  112

Query  78   RVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKY  137
            R   FDI A+L GGGPSGQAGA RL IARAL   +P +R  LK+AGFLTRD RA ERKK 
Sbjct  113  RENQFDIQANLNGGGPSGQAGAFRLAIARALNKYNPAERTDLKRAGFLTRDARAVERKKA  172

Query  138  GLKKARKAPQYSKR  151
            GL KAR+APQYSKR
Sbjct  173  GLHKARRAPQYSKR  186


>gi|291298449|ref|YP_003509727.1| 30S ribosomal protein S9 [Stackebrandtia nassauensis DSM 44728]
 gi|290567669|gb|ADD40634.1| ribosomal protein S9 [Stackebrandtia nassauensis DSM 44728]
Length=154

 Score =  196 bits (498),  Expect = 9e-49, Method: Compositional matrix adjust.
 Identities = 99/151 (66%), Positives = 119/151 (79%), Gaps = 0/151 (0%)

Query  1    MTETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYF  60
            MT   PAP +  A    A +  ++RP+QTVGRRK A+VR RLVPGTGKF LNG++LE YF
Sbjct  4    MTPAVPAPTSVPAAPPVAPAIPVDRPVQTVGRRKRAIVRTRLVPGTGKFILNGKTLEGYF  63

Query  61   PNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALK  120
            P+KVHQQ++  PLVT +R E++D+ A+L GGG +GQAGALRLGIARALI + PE R  LK
Sbjct  64   PSKVHQQIVAEPLVTTERSETYDVIANLKGGGVTGQAGALRLGIARALIELEPESRGPLK  123

Query  121  KAGFLTRDPRATERKKYGLKKARKAPQYSKR  151
            +AG+LTRDPR  E KKYGLKKARKAPQYSKR
Sbjct  124  RAGYLTRDPREKESKKYGLKKARKAPQYSKR  154


>gi|225020503|ref|ZP_03709695.1| hypothetical protein CORMATOL_00510 [Corynebacterium matruchotii 
ATCC 33806]
 gi|224946892|gb|EEG28101.1| hypothetical protein CORMATOL_00510 [Corynebacterium matruchotii 
ATCC 33806]
Length=177

 Score =  196 bits (497),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 96/128 (75%), Positives = 108/128 (85%), Gaps = 0/128 (0%)

Query  24   ERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFD  83
            E PIQTVGRRK A+VRVR+V GTG+F  NGR+LE+YFPNK+HQQLIKAPLV +DR   FD
Sbjct  50   EGPIQTVGRRKRAIVRVRMVEGTGQFVCNGRTLEEYFPNKLHQQLIKAPLVLIDRDGQFD  109

Query  84   IFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKAR  143
            I A+L GGGP+GQAGA RL IARAL + +P DRPALKKAGFLTRD RA ERKK GL KAR
Sbjct  110  IHANLTGGGPTGQAGAFRLAIARALNIYNPADRPALKKAGFLTRDARAVERKKAGLHKAR  169

Query  144  KAPQYSKR  151
            +APQYSKR
Sbjct  170  RAPQYSKR  177


>gi|336326383|ref|YP_004606349.1| 30S ribosomal protein S9 [Corynebacterium resistens DSM 45100]
 gi|336102365|gb|AEI10185.1| 30S ribosomal protein S9 [Corynebacterium resistens DSM 45100]
Length=179

 Score =  196 bits (497),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 98/130 (76%), Positives = 109/130 (84%), Gaps = 0/130 (0%)

Query  22   VLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVES  81
            V + PIQTVGRRKEAVVRVRLV G+G+F  NGRSLEDYFPNK+HQQLIKAPLV ++R   
Sbjct  50   VFDGPIQTVGRRKEAVVRVRLVAGSGEFTCNGRSLEDYFPNKLHQQLIKAPLVLLEREGQ  109

Query  82   FDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKK  141
            FDI A+L GGGPSGQAGA+RL IARAL   +PE+R  LKKAGFLTRD RA ERKK GL K
Sbjct  110  FDIQANLQGGGPSGQAGAMRLAIARALNKYNPEERTELKKAGFLTRDARAVERKKAGLHK  169

Query  142  ARKAPQYSKR  151
            AR+APQYSKR
Sbjct  170  ARRAPQYSKR  179


>gi|305679646|ref|ZP_07402456.1| ribosomal protein S9 [Corynebacterium matruchotii ATCC 14266]
 gi|305660266|gb|EFM49763.1| ribosomal protein S9 [Corynebacterium matruchotii ATCC 14266]
Length=177

 Score =  194 bits (493),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 95/128 (75%), Positives = 108/128 (85%), Gaps = 0/128 (0%)

Query  24   ERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFD  83
            E PIQTVGRRK A+VRVR+V G+G+F  NGR+LE+YFPNK+HQQLIKAPLV +DR   FD
Sbjct  50   EGPIQTVGRRKRAIVRVRMVEGSGQFVCNGRTLEEYFPNKLHQQLIKAPLVLIDRDGQFD  109

Query  84   IFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKAR  143
            I A+L GGGP+GQAGA RL IARAL + +P DRPALKKAGFLTRD RA ERKK GL KAR
Sbjct  110  IHANLTGGGPTGQAGAFRLAIARALNIYNPADRPALKKAGFLTRDARAVERKKAGLHKAR  169

Query  144  KAPQYSKR  151
            +APQYSKR
Sbjct  170  RAPQYSKR  177


>gi|158317759|ref|YP_001510267.1| 30S ribosomal protein S9 [Frankia sp. EAN1pec]
 gi|158113164|gb|ABW15361.1| ribosomal protein S9 [Frankia sp. EAN1pec]
Length=135

 Score =  192 bits (488),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 104/124 (84%), Gaps = 0/124 (0%)

Query  28   QTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAH  87
            +  GRRKEAVVRVRL+PGTG ++LNGR LE+YFPNKVHQQL+  PL T++R ES+D+ A 
Sbjct  12   RATGRRKEAVVRVRLIPGTGNWNLNGRKLEEYFPNKVHQQLVNEPLKTLERAESYDVVAR  71

Query  88   LGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQ  147
            L GGG SGQAGALRL IARALI+V  E RP LKKAGFLTRD R  ERKKYGLKKARKAPQ
Sbjct  72   LHGGGVSGQAGALRLAIARALIVVDEEARPTLKKAGFLTRDARVKERKKYGLKKARKAPQ  131

Query  148  YSKR  151
            YSKR
Sbjct  132  YSKR  135



Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128896424032


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40