BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3448 Length=467 Score E Sequences producing significant alignments: (Bits) Value gi|15610584|ref|NP_217965.1| integral membrane protein [Mycobact... 885 0.0 gi|31794625|ref|NP_857118.1| integral membrane protein [Mycobact... 883 0.0 gi|340628419|ref|YP_004746871.1| putative integral membrane prot... 877 0.0 gi|240167793|ref|ZP_04746452.1| putative integral membrane prote... 349 6e-94 gi|183981121|ref|YP_001849412.1| hypothetical protein MMAR_1101 ... 308 1e-81 gi|118616634|ref|YP_904966.1| hypothetical protein MUL_0859 [Myc... 302 1e-79 gi|342861877|ref|ZP_08718522.1| hypothetical protein MCOL_23425 ... 297 2e-78 gi|296168731|ref|ZP_06850441.1| conserved hypothetical protein [... 260 4e-67 gi|254819228|ref|ZP_05224229.1| hypothetical protein MintA_04841... 256 7e-66 gi|41410338|ref|NP_963174.1| hypothetical protein MAP4240c [Myco... 254 3e-65 gi|336460697|gb|EGO39587.1| type VII secretion integral membrane... 252 1e-64 gi|118466832|ref|YP_883526.1| hypothetical protein MAV_4391 [Myc... 246 5e-63 gi|169630836|ref|YP_001704485.1| hypothetical protein MAB_3757 [... 169 9e-40 gi|54022817|ref|YP_117059.1| hypothetical protein nfa8500 [Nocar... 152 9e-35 gi|226365631|ref|YP_002783414.1| hypothetical protein ROP_62220 ... 145 2e-32 gi|312140880|ref|YP_004008216.1| esx cluster integral membrane p... 125 2e-26 gi|325675482|ref|ZP_08155166.1| hypothetical protein HMPREF0724_... 124 2e-26 gi|296393782|ref|YP_003658666.1| secretion protein snm4 [Segnili... 124 4e-26 gi|262201637|ref|YP_003272845.1| secretion protein snm4 [Gordoni... 113 7e-23 gi|317506955|ref|ZP_07964724.1| secretion protein snm4 [Segnilip... 110 4e-22 gi|343925122|ref|ZP_08764654.1| hypothetical protein GOALK_033_0... 107 3e-21 gi|256380557|ref|YP_003104217.1| secretion protein snm4 [Actinos... 101 3e-19 gi|54022794|ref|YP_117036.1| hypothetical protein nfa8270 [Nocar... 99.8 1e-18 gi|257054508|ref|YP_003132340.1| secretion protein snm4 [Sacchar... 97.1 7e-18 gi|226305379|ref|YP_002765337.1| hypothetical protein RER_18900 ... 96.3 1e-17 gi|302524033|ref|ZP_07276375.1| predicted protein [Streptomyces ... 96.3 1e-17 gi|333991914|ref|YP_004524528.1| hypothetical protein JDM601_327... 95.5 2e-17 gi|229489514|ref|ZP_04383377.1| secretion protein Snm4 [Rhodococ... 94.4 4e-17 gi|300782649|ref|YP_003762940.1| integral membrane protein [Amyc... 89.4 1e-15 gi|254776823|ref|ZP_05218339.1| hypothetical protein MaviaA2_194... 88.2 3e-15 gi|333921709|ref|YP_004495290.1| hypothetical protein AS9A_4056 ... 81.6 3e-13 gi|120402457|ref|YP_952286.1| hypothetical protein Mvan_1446 [My... 79.7 9e-13 gi|134103221|ref|YP_001108882.1| integral membrane protein [Sacc... 79.7 1e-12 gi|254776821|ref|ZP_05218337.1| hypothetical protein MaviaA2_194... 78.6 2e-12 gi|297153986|gb|ADI03698.1| hypothetical protein SBI_00577 [Stre... 77.4 5e-12 gi|120401109|ref|YP_950938.1| hypothetical protein Mvan_0081 [My... 77.4 5e-12 gi|291444830|ref|ZP_06584220.1| conserved hypothetical protein [... 75.9 2e-11 gi|239987847|ref|ZP_04708511.1| hypothetical protein SrosN1_1111... 75.9 2e-11 gi|294812763|ref|ZP_06771406.1| putative integral membrane prote... 72.0 2e-10 gi|344999823|ref|YP_004802677.1| secretion protein snm4 [Strepto... 71.2 3e-10 gi|291298206|ref|YP_003509484.1| secretion protein snm4 [Stackeb... 69.7 1e-09 gi|108798097|ref|YP_638294.1| hypothetical protein Mmcs_1125 [My... 68.6 2e-09 gi|119867193|ref|YP_937145.1| hypothetical protein Mkms_1142 [My... 68.6 2e-09 gi|302544287|ref|ZP_07296629.1| secretion protein Snm4 [Streptom... 68.2 3e-09 gi|118473897|ref|YP_884486.1| transmembrane protein [Mycobacteri... 67.4 5e-09 gi|296138595|ref|YP_003645838.1| secretion protein snm4 [Tsukamu... 67.0 6e-09 gi|315441757|ref|YP_004074636.1| secretion protein snm4 [Mycobac... 67.0 7e-09 gi|329934553|ref|ZP_08284594.1| integral membrane protein [Strep... 66.6 9e-09 gi|297563535|ref|YP_003682509.1| secretion protein snm4 [Nocardi... 66.2 1e-08 gi|289441319|ref|ZP_06431063.1| conserved membrane protein [Myco... 65.5 2e-08 >gi|15610584|ref|NP_217965.1| integral membrane protein [Mycobacterium tuberculosis H37Rv] gi|15843043|ref|NP_338080.1| hypothetical protein MT3554 [Mycobacterium tuberculosis CDC1551] gi|121639369|ref|YP_979593.1| putative integral membrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] 73 more sequence titles Length=467 Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/467 (100%), Positives = 467/467 (100%), Gaps = 0/467 (0%) Query 1 MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALG 60 MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALG Sbjct 1 MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALG 60 Query 61 APALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRL 120 APALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRL Sbjct 61 APALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRL 120 Query 121 SGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIA 180 SGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIA Sbjct 121 SGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIA 180 Query 181 GLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACC 240 GLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACC Sbjct 181 GLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACC 240 Query 241 AVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDDAD 300 AVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDDAD Sbjct 241 AVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDDAD 300 Query 301 ALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGA 360 ALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGA Sbjct 301 ALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGA 360 Query 361 LLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFV 420 LLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFV Sbjct 361 LLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFV 420 Query 421 APALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLTWT 467 APALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLTWT Sbjct 421 APALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLTWT 467 >gi|31794625|ref|NP_857118.1| integral membrane protein [Mycobacterium bovis AF2122/97] gi|31620222|emb|CAD95665.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97] Length=467 Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/467 (99%), Positives = 466/467 (99%), Gaps = 0/467 (0%) Query 1 MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALG 60 MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALG Sbjct 1 MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALG 60 Query 61 APALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRL 120 APALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRL Sbjct 61 APALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRL 120 Query 121 SGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIA 180 SGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIA Sbjct 121 SGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIA 180 Query 181 GLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACC 240 GLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACC Sbjct 181 GLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACC 240 Query 241 AVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDDAD 300 AVVVAAATLVGAITAAPVPAIGSL TLASFGLLEVSARMAVLLAGLSPRLPPALNPDDAD Sbjct 241 AVVVAAATLVGAITAAPVPAIGSLDTLASFGLLEVSARMAVLLAGLSPRLPPALNPDDAD 300 Query 301 ALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGA 360 ALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGA Sbjct 301 ALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGA 360 Query 361 LLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFV 420 LLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFV Sbjct 361 LLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFV 420 Query 421 APALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLTWT 467 APALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLTWT Sbjct 421 APALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLTWT 467 >gi|340628419|ref|YP_004746871.1| putative integral membrane protein [Mycobacterium canettii CIPT 140010059] gi|340006609|emb|CCC45796.1| putative conserved integral membrane protein [Mycobacterium canettii CIPT 140010059] Length=467 Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/467 (99%), Positives = 464/467 (99%), Gaps = 0/467 (0%) Query 1 MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALG 60 MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALG Sbjct 1 MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALG 60 Query 61 APALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRL 120 APALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRL Sbjct 61 APALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRL 120 Query 121 SGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIA 180 SGALAASCITAGGGLMLVRNALGTNVTR+SD TAGVVAAAGLAALLFAVIACRTYRDPIA Sbjct 121 SGALAASCITAGGGLMLVRNALGTNVTRHSDTTAGVVAAAGLAALLFAVIACRTYRDPIA 180 Query 181 GLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACC 240 GLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMR+TGCGGITLTAVACC Sbjct 181 GLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRVTGCGGITLTAVACC 240 Query 241 AVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDDAD 300 AVVVAAA LVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDD D Sbjct 241 AVVVAAAALVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDDTD 300 Query 301 ALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGA 360 ALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGA Sbjct 301 ALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGA 360 Query 361 LLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFV 420 LLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFV Sbjct 361 LLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFV 420 Query 421 APALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLTWT 467 APALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLTWT Sbjct 421 APALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLTWT 467 >gi|240167793|ref|ZP_04746452.1| putative integral membrane protein [Mycobacterium kansasii ATCC 12478] Length=456 Score = 349 bits (895), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 243/464 (53%), Positives = 297/464 (65%), Gaps = 9/464 (1%) Query 1 MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALG 60 M +DPGLRRV VHAG VDL+LPAA+PVA LIP I+DILGDR TA Y L G Sbjct 1 MSAADPGLRRVAVHAGTTVVDLSLPAALPVAALIPPIIDILGDR-IPRDTATGYHLCTPG 59 Query 61 APALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRL 120 L +ATTLA+ IRDGAVLVL +S +PP R DD+AEAV+A L + A C+R RL Sbjct 60 GDRLASATTLAESDIRDGAVLVLSRSVPEPPVQRHDDLAEAVSAVLGSAAHRPCRRAARL 119 Query 121 SGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIA 180 +G++AA +T G +L+ +AL V + A A ALL A IA R +RDPIA Sbjct 120 TGSMAAGVVTGAGSGVLILDALRAGVQHGATAGVAAAAGV--IALLLAGIAHRIHRDPIA 177 Query 181 GLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACC 240 LTLSVIAT+F AVAGLLAVPG PG+ ++AA AA + LA+R+TGCG +TLTAVA C Sbjct 178 ALTLSVIATVFVAVAGLLAVPGAPGMPHAMLAATGAAVAATLAIRVTGCGVVTLTAVAGC 237 Query 241 AVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDDAD 300 A V+A A L G ++AAP I S LAS GLLEV RM++ LAGLSPRLPPA + DD D Sbjct 238 ATVIAVAALAGVLSAAPRYVIASSTALASLGLLEVCGRMSIALAGLSPRLPPAPDHDDGD 297 Query 301 ALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGA 360 LP + L T++ RAD WLTSLLA F+ A IG + A+ T R+ A Sbjct 298 ELPPAEVLATKSMRADNWLTSLLATFSGCAAIGVLVAALTT---QRAVP---LAATTAAL 351 Query 361 LLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFV 420 LLL R L+ I GI T TAF +AA ++HG W+AALTA+LAA AMF GFV Sbjct 352 LLLRARAHRHRTRWLLLVISGIVTGTTAFLIAAANWMQHGVWVAALTAILAAAAMFPGFV 411 Query 421 APALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDL 464 APA+SLSPV R +E LE A +A+ PL W CG + AVR L+L Sbjct 412 APAISLSPVARRGVEALELAAWVAVAPLVCWTCGVFGAVRGLEL 455 >gi|183981121|ref|YP_001849412.1| hypothetical protein MMAR_1101 [Mycobacterium marinum M] gi|183174447|gb|ACC39557.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=460 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 240/468 (52%), Positives = 305/468 (66%), Gaps = 16/468 (3%) Query 4 SDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDR--GASPATAARYQLSALGA 61 S+PGL RV VH+G VDL+LPAA+PVA LIP+IV+ LG R GA+P RYQL LGA Sbjct 5 SEPGLCRVAVHSGTAVVDLSLPAALPVAELIPAIVESLGGRDIGAAPT---RYQLCPLGA 61 Query 62 PALPNATTLAQCGIRDGAVLVLHKSSAQP-PTPRCDDVAEAVAAALDTTARPQCQRTTRL 120 ALP + +LAQ GIRDG VL L + SA+P P P DD AEAV A L + RP +R L Sbjct 62 GALPPSQSLAQSGIRDGTVLSLSRCSAEPAPGPH-DDDAEAVLATLRGSTRPPSRRAKEL 120 Query 121 SGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIA 180 +GAL A + G ++LVR+ALG N R+ ATA V +G+ ALL A +A RT R+P A Sbjct 121 TGALTAGGVGGVGAVLLVRDALG-NTDRHGAATAVVAITSGVLALLVAGMARRTGREPTA 179 Query 181 GLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACC 240 TL+VIAT F AV LLAVPG GV ++++AAM A+ + LA+R+TGCGG+T TAV CC Sbjct 180 VFTLNVIATTFVAVGALLAVPGRLGVPNLMLAAMGASVAAALAIRLTGCGGVTFTAVMCC 239 Query 241 AVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDDAD 300 A+V+AAA L G IT A + +GSL TLA+ LEVSAR+++++AGLSP+LP A ++A Sbjct 240 AIVIAAAALCGVITGAALYVVGSLTTLAALVALEVSARVSMVVAGLSPKLPAAPGSEEAP 299 Query 301 ALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGA 360 L D L TRA RAD WL L F+++A +GA+ + S I L AVTGA Sbjct 300 ELAAPDLLATRAVRADRWLNGLHGGFSSAAALGAVVAVLG-------SQRAIGLTAVTGA 352 Query 361 LLLLRARSA-DTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGF 419 +LLLRAR+ D R L+F I G AF VAA +HGPWIA LTA L A+A+ LGF Sbjct 353 VLLLRARAQVDGRSRLMFLIAGYVAGTAAFAVAAPGLAQHGPWIAILTAALTALALHLGF 412 Query 420 VAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLTWT 467 +AP SP+ R I+ LE A +++PL W CG +SAV L LTWT Sbjct 413 IAPTRPPSPIACRLIDALEFSASASLLPLACWTCGVFSAVGGLGLTWT 460 >gi|118616634|ref|YP_904966.1| hypothetical protein MUL_0859 [Mycobacterium ulcerans Agy99] gi|118568744|gb|ABL03495.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=460 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 240/468 (52%), Positives = 303/468 (65%), Gaps = 16/468 (3%) Query 4 SDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDR--GASPATAARYQLSALGA 61 S+PGL RV VH+G VDL+LPAA+P A LIP+IV+ LG R GA+P RYQL LGA Sbjct 5 SEPGLCRVAVHSGTAVVDLSLPAALPFAELIPAIVESLGGRDIGAAPT---RYQLCPLGA 61 Query 62 PALPNATTLAQCGIRDGAVLVLHKSSAQP-PTPRCDDVAEAVAAALDTTARPQCQRTTRL 120 ALP + +LAQ GIRDG VL L + SA+P P P DD AEAV A L + RP +R L Sbjct 62 GALPPSKSLAQRGIRDGTVLSLSRCSAEPAPGPH-DDDAEAVLATLRGSTRPPSRRAKEL 120 Query 121 SGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIA 180 +GAL A + G ++LVR+ALG N R+ ATA V + + ALL A + RT R+P A Sbjct 121 TGALTAGGVGGVGAVLLVRDALG-NTDRHGAATAVVAITSRVLALLVAGMTRRTGREPTA 179 Query 181 GLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACC 240 TL+VIAT F AV LLAVPG GV ++++AAM A+ + LA+R+TGCGG+T TAV CC Sbjct 180 VFTLNVIATTFVAVGALLAVPGRLGVPNLMLAAMGASVAAALAIRLTGCGGVTFTAVMCC 239 Query 241 AVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDDAD 300 A+V+AAA L G IT A + +GSL TLA+ LEVSAR+++++AGLSP+LP A ++A Sbjct 240 AIVIAAAALCGVITGAALYVVGSLTTLAALVALEVSARVSMVVAGLSPKLPAAPGSEEAP 299 Query 301 ALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGA 360 L D L TRA RAD WL L F+++A A+G VA G R+ I L AVTGA Sbjct 300 ELAAPDLLATRAIRADRWLNGLHGGFSSAA---ALGAVVAVFGSQRA----IGLTAVTGA 352 Query 361 LLLLRAR-SADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGF 419 +LLLRAR D R L+F I G AF VAA +HGPWIA LTA L A+A+ LGF Sbjct 353 VLLLRARAQVDGRSRLMFLIAGYVAGTAAFAVAAPGLAQHGPWIAILTAALTALALHLGF 412 Query 420 VAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLTWT 467 +AP SP+ R I+ LE A +++PL W CG +SAV L LTWT Sbjct 413 IAPTRPPSPIACRLIDALEFSASASLLPLACWTCGVFSAVGGLGLTWT 460 >gi|342861877|ref|ZP_08718522.1| hypothetical protein MCOL_23425 [Mycobacterium colombiense CECT 3035] gi|342130694|gb|EGT83998.1| hypothetical protein MCOL_23425 [Mycobacterium colombiense CECT 3035] Length=451 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 240/463 (52%), Positives = 286/463 (62%), Gaps = 17/463 (3%) Query 8 LRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILG-DRGASPATAARYQLSALGAPALPN 66 +RRV VH G AVD+T+PA VPVA LIPS+VD+LG DR A+RY+LS GA L Sbjct 1 MRRVAVHWGTAAVDITVPAEVPVAALIPSVVDLLGVDR--PDHEASRYRLSVPGASRLDP 58 Query 67 ATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQC----QRTTRLSG 122 + TLAQ I DGA+LVL S A P PR DVAE V+AALD TA P R RL G Sbjct 59 SMTLAQQDIGDGALLVLSLSGAPLPAPRHFDVAEVVSAALDATATPNGGAARARAVRLIG 118 Query 123 ALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIAGL 182 +AA + GGL +VRN L N R AT +AAAG AL+ A IA R YRD AGL Sbjct 119 VVAAMLFSGAGGLAIVRNTLHANGERDVTATVIALAAAGGLALVLAAIAHRRYRDQTAGL 178 Query 183 TLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACCAV 242 LSVIAT A+AG +AVPG G VL+AA AA T+V+AMR++GCG + LTA++ CAV Sbjct 179 ALSVIATASMAIAGFVAVPGAFGASDVLLAAAAAGVTTVVAMRVSGCGTVPLTAMSVCAV 238 Query 243 VVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDDADAL 302 V+A A LVG + AAP+ + S A L S LL V+AR ++ LAGLSPRL + A+ Sbjct 239 VIAVAGLVGVLGAAPLRVVASAAALISVCLLPVAARASIALAGLSPRL------ETAETE 292 Query 303 PTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGALL 362 P R +RA AD WLT LLA + SA G + T +A G R S A +TGALL Sbjct 293 PRDARTRSRAVHADRWLTGLLAGLSISAAAGGVATVLA--GAPRLSC--TAFGTLTGALL 348 Query 363 LLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFVAP 422 LLRAR D RR LVFAI GI+ AT VAA RA GPWIAA T + A AM+ G+ P Sbjct 349 LLRARCGDVRRMLVFAIGGISVSATTLGVAAARATVPGPWIAAATTLAVAAAMYFGWAGP 408 Query 423 ALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLT 465 A SPV LLE LAL AMVPLT W+CG Y+A R +LT Sbjct 409 ARPASPVLRAGAGLLEWLALAAMVPLTCWICGLYAAARGWNLT 451 >gi|296168731|ref|ZP_06850441.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896568|gb|EFG76210.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=454 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 240/459 (53%), Positives = 304/459 (67%), Gaps = 11/459 (2%) Query 11 VTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPA-TAARYQLSALGAPALPNATT 69 +++H+G+ AVDL+LPA +P+A L PSIVD+L R A A TA RY LS G+ AL + T Sbjct 1 MSIHSGSTAVDLSLPAEIPIAVLTPSIVDVLHVRDAGNASTARRYHLSLPGSAALDPSKT 60 Query 70 LAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAV----AAALDTTARPQCQRTTRLSGALA 125 LAQ GI DGAVL+L SSA PP R D AEAV AAA + A + +R TR+ G + Sbjct 61 LAQSGIADGAVLLLGGSSAPPPAVRHHDTAEAVCEALAAAPEPWAAARRRRATRVGGVVT 120 Query 126 ASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIAGLTLS 185 A+C+T G L LVRNAL N R T V AAA + ALL AV+A R YRDP AGL L+ Sbjct 121 AACVTGIGALALVRNALHGNGGRELHTTVAVAAAASVLALLSAVVAHRAYRDPAAGLALN 180 Query 186 VIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACCAVVVA 245 +A F AVAG+LAVPG PG VL+ A AAA T+VLA+R +GCG TLTAV+C A VVA Sbjct 181 AMAAAFAAVAGVLAVPGGPGACKVLLGATAAAVTAVLAIRASGCGLATLTAVSCAATVVA 240 Query 246 AATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDDADALPTT 305 AA LVG IT AP+ AIG+ + L S GLL +AR++V++AGL PRL A PD A T Sbjct 241 AAALVGVITTAPLRAIGAASALVSVGLLGAAARVSVVVAGLFPRL--AATPDTDPAETTG 298 Query 306 DRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGALLLLR 365 + RA+RADAWL+SLLA F+++A +GA+ +A G R S +A +TGALLLLR Sbjct 299 TCVAARAHRADAWLSSLLAGFSSAAAVGAVIGVLA--GAPRLSC--VAFGCITGALLLLR 354 Query 366 ARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFVAPALS 425 AR++D + L FA GI + T F AA HG W+AA T LAA A++LGF AP +S Sbjct 355 ARTSDGAKMLTFAGGGILVLTTTFGAAAMSTPGHGAWVAAATGTLAAAAIYLGFFAPDVS 414 Query 426 LSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDL 464 L P+ +R+++ LE LALIAM PL W+CG Y AVR ++L Sbjct 415 LPPLVHRSVDALEWLALIAMAPLACWICGLYGAVRGMNL 453 >gi|254819228|ref|ZP_05224229.1| hypothetical protein MintA_04841 [Mycobacterium intracellulare ATCC 13950] Length=469 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 232/466 (50%), Positives = 274/466 (59%), Gaps = 15/466 (3%) Query 4 SDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALGAPA 63 SD GL RV VH G DL LPA VPVA LIPS++D LG A A RYQ+S GA A Sbjct 15 SDTGLCRVRVHWGTAVADLALPAGVPVAVLIPSLIDALGVSHAD-QEAVRYQVSIPGASA 73 Query 64 LPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQ----CQRTTR 119 L +TTLAQ I DGAVLVL P PR D+A VAA L+ AR + +R TR Sbjct 74 LDPSTTLAQNRIGDGAVLVLSTPPVPLPAPRYVDIAREVAATLEGPARLRGGAATRRVTR 133 Query 120 LSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPI 179 L GA AA +TA GGL LVRN + R T + +A L AL A +A R YRDPI Sbjct 134 LCGATAAVVLTAVGGLALVRNTFSDSHPRDVGMTGAALGSAALVALGLAAVAHRAYRDPI 193 Query 180 AGLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVAC 239 AGL LSVIAT+F AVAG + VPG P V +VL+AA AAA T+VLAMR++GCG + LTA AC Sbjct 194 AGLALSVIATVFAAVAGFVMVPGGPSVSNVLLAAAAAAVTAVLAMRLSGCGVVALTAAAC 253 Query 240 CAVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDDA 299 A VAAA LVGAITAAPV I S + + S GLL + RM++ LA LSPR D A Sbjct 254 FAAAVAAAALVGAITAAPVHVIASASAVLSLGLLGAAPRMSIALARLSPRF---ATTDFA 310 Query 300 DALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTG 359 D P+ R+ +A RAD WL SL A ++SA +GA T +A G R S +A VT Sbjct 311 DPGPSDSRVPAQAIRADRWLVSLRAGLSSSAGVGAALTVLA--GAPRLSC--MAFGTVTA 366 Query 360 ALLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGF 419 AL LLR RS L FA+ G AT F V R GP +AA TA+ AA Sbjct 367 ALFLLRCRSGAGAGLLSFAVGGTLIAATTFGVTVLRMQMPGPLLAAATALAAAAMYLGLA 426 Query 420 VAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLT 465 P+ SPV R +E+LE LA A+VPL W+ YSAVR L LT Sbjct 427 ATPS---SPVALRCVEVLEWLAWSALVPLACWISELYSAVRGLHLT 469 >gi|41410338|ref|NP_963174.1| hypothetical protein MAP4240c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399172|gb|AAS06790.1| hypothetical protein MAP_4240c [Mycobacterium avium subsp. paratuberculosis K-10] Length=452 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 220/466 (48%), Positives = 278/466 (60%), Gaps = 17/466 (3%) Query 1 MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALG 60 M S GL RV+VH QAVD++LPA + VA LIPS+VD+LG A A RY+LSA G Sbjct 1 MAVSTTGLCRVSVHWETQAVDVSLPAEIAVAELIPSLVDMLG---AGDGGAGRYRLSAAG 57 Query 61 APALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRL 120 A AL +TTLA I DGA+LVL + P PR D+A+ V+AALD TARP Sbjct 58 AAALDPSTTLAHNHIGDGAILVLSRIDVPLPAPRYRDIADTVSAALDATARPGVAVRRVA 117 Query 121 SGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIA 180 A AAS +TAGG L+LVRN V R S T V+ + L L A +A R YRD A Sbjct 118 GAAAAASFVTAGG-LLLVRNTFSAGVVRDSGGTVAVLVSTTLLTLGAAAVAHRGYRDRGA 176 Query 181 GLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACC 240 L L IAT+F +AG +AVPG P + VL+AA AA +V A+ ++GC G L A+AC Sbjct 177 ALALGAIATVFAGLAGFVAVPGAPSLSHVLLAAAAAGLAAVSAIGLSGCCGAGLLALACW 236 Query 241 AVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPAL--NPDD 298 +++A A L G ++ AP+P + S A L S LL ++AR ++ LAGLSPR A P+ Sbjct 237 CLILATAALAGVLSGAPLPTVASAAGLVSLCLLGMAARASLALAGLSPRPATATAGGPEP 296 Query 299 ADALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVT 358 +A ++ RA RAD WLT LLA ++SAT+ A T +A G R + +A T Sbjct 297 GEAW-----VSARARRADRWLTGLLAGLSSSATVAAAVTVLA--GAPR--LCCLAFGTGT 347 Query 359 GALLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLG 418 GALLLLR+R D R+LVFA I T AT F VAA A GPW+AA TA L A A++LG Sbjct 348 GALLLLRSRGGDGTRALVFAAGAIVTTATTFGVAAWSAPLPGPWVAATTATLVAAALYLG 407 Query 419 FVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDL 464 A + SPV R +LLE LAL A+VPLT W+ G Y VR L L Sbjct 408 CA--ARTCSPVLSRAADLLEWLALAALVPLTCWIAGLYGTVRGLTL 451 >gi|336460697|gb|EGO39587.1| type VII secretion integral membrane protein EccD [Mycobacterium avium subsp. paratuberculosis S397] Length=454 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 219/463 (48%), Positives = 277/463 (60%), Gaps = 17/463 (3%) Query 4 SDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALGAPA 63 S GL RV+VH QAVD++LPA + VA LIPS+VD+LG A A RY+LSA GA A Sbjct 6 STTGLCRVSVHWETQAVDVSLPAEIAVAELIPSLVDMLG---AGDGGAGRYRLSAAGAAA 62 Query 64 LPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRLSGA 123 L +TTLA I DGA+LVL + P PR D+A+ V+AALD TARP A Sbjct 63 LDPSTTLAHNHIGDGAILVLSRIDVPLPAPRYRDIADTVSAALDATARPGVAVRRVAGAA 122 Query 124 LAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIAGLT 183 AAS +TAGG L+LVRN V R S T V+ + L L A +A R YRD A L Sbjct 123 AAASFVTAGG-LLLVRNTFSAGVVRDSGGTVAVLVSTTLLTLGAAAVAHRGYRDRGAALA 181 Query 184 LSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACCAVV 243 L IAT+F +AG +AVPG P + VL+AA AA +V A+ ++GC G L A+AC ++ Sbjct 182 LGAIATVFAGLAGFVAVPGAPSLSHVLLAAAAAGLAAVSAIGLSGCCGAGLLALACWCLI 241 Query 244 VAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPAL--NPDDADA 301 +A A L G ++ AP+P + S A L S LL ++AR ++ LAGLSPR A P+ +A Sbjct 242 LATAALAGVLSGAPLPTVASAAGLVSLCLLGMAARASLALAGLSPRPATATAGGPEPGEA 301 Query 302 LPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGAL 361 ++ RA RAD WLT LLA ++SAT+ A T +A G R + +A TGAL Sbjct 302 W-----VSARARRADRWLTGLLAGLSSSATVAAAVTVLA--GAPR--LCCLAFGTGTGAL 352 Query 362 LLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFVA 421 LLLR+R D R+LVFA I T AT F VAA A GPW+AA TA L A A++LG Sbjct 353 LLLRSRGGDGTRALVFAAGAIVTTATTFGVAAWSAPLPGPWVAATTATLVAAALYLGCA- 411 Query 422 PALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDL 464 A + SPV R +LLE LAL A+VPLT W+ G Y VR L L Sbjct 412 -ARTCSPVLSRAADLLEWLALAALVPLTCWIAGLYGTVRGLTL 453 >gi|118466832|ref|YP_883526.1| hypothetical protein MAV_4391 [Mycobacterium avium 104] gi|118168119|gb|ABK69016.1| conserved hypothetical protein [Mycobacterium avium 104] Length=453 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 223/463 (49%), Positives = 281/463 (61%), Gaps = 18/463 (3%) Query 4 SDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALGAPA 63 S GL RV+VH QAVD++LPA + VA LIPS+VD+LG A A RY+LSA GA A Sbjct 6 STTGLCRVSVHWETQAVDVSLPAEIAVAELIPSLVDMLG---AGDGGAGRYRLSAPGAAA 62 Query 64 LPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRLSGA 123 L +TTLA I DGA+LVL + P PR D+A+ V+AALD TARP A Sbjct 63 LDPSTTLAHNHIGDGAILVLSRIDVPLPAPRYRDIADTVSAALDATARPDVAVRRVAGAA 122 Query 124 LAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIAGLT 183 AAS + AGG L LVRN +V S T V+ + L L A +A R YRDP A L Sbjct 123 AAASFVAAGG-LQLVRNTFSASVVPDSGGTVAVLVSTTLLTLGAAAVAHRGYRDPGAALA 181 Query 184 LSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACCAVV 243 L IAT+F +AG +AVPG P + VL+AA AA +V A+ ++GCG L A+AC ++ Sbjct 182 LGAIATVFAGLAGFVAVPGAPSLSHVLLAAAAAGLAAVSAIGLSGCGA-GLLALACWCLI 240 Query 244 VAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPR--LPPALNPDDADA 301 +A A L G ++ AP+PA+ S A L S LL ++AR ++ LAGLSPR PA P+ +A Sbjct 241 LATAALAGVLSGAPLPAVASAAGLVSLCLLGMAARASLALAGLSPRPATAPAGGPEPGEA 300 Query 302 LPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGAL 361 ++ RA RAD WLT LLA ++SAT+GA T +A G R + +A TGAL Sbjct 301 W-----VSARARRADRWLTGLLAGLSSSATVGAAVTVLA--GAPR--LCCLAFGTGTGAL 351 Query 362 LLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFVA 421 LLLR+R D R+LVFA GI T AT F VAA A GPW+AA TA L A A++LG A Sbjct 352 LLLRSRGGDGTRALVFAAGGIVTTATTFGVAAWSAPLPGPWVAATTATLVAAALYLG-CA 410 Query 422 PALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDL 464 P + SPV R +LLE LAL A+VPLT W+ G Y VR L L Sbjct 411 PR-TCSPVLSRAADLLEWLALAALVPLTCWIAGLYGTVRGLTL 452 >gi|169630836|ref|YP_001704485.1| hypothetical protein MAB_3757 [Mycobacterium abscessus ATCC 19977] gi|169242803|emb|CAM63831.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=511 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 174/500 (35%), Positives = 241/500 (49%), Gaps = 53/500 (10%) Query 10 RVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASP-------ATAARYQLSALGAP 62 RV++ A VDL LP +VP+A L+ SIVDI+ P A ++LS G P Sbjct 19 RVSIQAERTQVDLALPTSVPLALLVGSIVDIINQHVGVPELTSPEDAVETHWRLSRPGQP 78 Query 63 ALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRLSG 122 L ++TL + +RDG +L+L +S P P DDV AV+ +A P + R+ G Sbjct 79 PLQMSSTLGELEVRDGDLLILTRSDVAAPDPLFDDVFLAVSTFRTVSAHPWSRNAARILG 138 Query 123 ALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIAGL 182 A G L+R A TN A +A L A+ AV A R Y D +A + Sbjct 139 ASVCGLSALLGATALLR-AGATNPGLLLPIIAVAIA---LVAMTAAVFANRVYDDSLASV 194 Query 183 TLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACCAV 242 LS A F AVAG L VPG G ++A M A S+LAMR TG G +L AVA + Sbjct 195 MLSHCAVGFSAVAGALFVPGKYGAPHAMLALMVAMVVSILAMRATGTGTTSLVAVASASF 254 Query 243 VVAAATLVGAITAAPVPAIGSLATLASFGLLEV--SARMAVLLAGLS-PRLPPALNP--- 296 + AA L + P+ ++G A L S G+ V S R+A++LA L P +P P Sbjct 255 LGFAAALGYVLFEPPIYSLG--AVLGSVGICAVALSPRVAMVLARLPLPPVPTQGAPSRP 312 Query 297 -----------------------DDADALPTTDRLTTRANRADAWLTSLLAAFAASATIG 333 +DA ALP L +A RA A LT L+ +A +G Sbjct 313 EHSTAPIEAIEGLDGLDTEGDDVEDATALPPLPDLREKALRAHAVLTGLVCGTSAVTAVG 372 Query 334 AIGTAV------ATH--GIHRSSMGGIALAAVTGALLLLRARS-ADTRRSLVFAICGITT 384 A+ A+ H G HR + G+ LA + ++LRARS AD +++ + GI Sbjct 373 AMLAALTFSGAGGHHPTGAHR--LSGVVLAGLIALAMMLRARSHADLAQTVAINLGGIAI 430 Query 385 VATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFVAPALSLSPVTYRTIELLECLALIA 444 A AF A + L A+ A A+ LGF+ A SPV RT+E++E +AL Sbjct 431 PAAAFAFVAVAYPTAAVFTTVLAAIAAGSAIALGFLVSARKYSPVARRTVEIIEYIALSL 490 Query 445 MVPLTAWLCGAYSAVRHLDL 464 +VP+ W+CG YSAVR L+L Sbjct 491 IVPIAVWVCGVYSAVRGLNL 510 >gi|54022817|ref|YP_117059.1| hypothetical protein nfa8500 [Nocardia farcinica IFM 10152] gi|54014325|dbj|BAD55695.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=488 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 149/475 (32%), Positives = 221/475 (47%), Gaps = 25/475 (5%) Query 6 PGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILG--------DRGASPATAARYQLS 57 P L RVT+ A VD+ +P VPVA +IPS+VD++ D A + L+ Sbjct 21 PDLARVTILAKHTQVDMAIPVDVPVALVIPSVVDMVAQHSRSNDFDNEGERFEPAEWVLA 80 Query 58 ALGAPALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRT 117 +G P N+ +L + G+RDG +L+L +S PTP DD+ VA A R T Sbjct 81 RIGHPPFSNSLSLGEHGVRDGELLMLESASHTAPTPLFDDIMYNVAIADADHFRGWTPET 140 Query 118 TRLSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFA-VIACRTYR 176 RL+G++ A+ G L L+ + + +G +A A + L+ A ++ R Y Sbjct 141 ARLTGSVLAAVTMLVGCLGLLASPAAM-----PEWVSGSIALAVVILLVVAGMVLSRMYG 195 Query 177 DPIAGLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTA 236 D L L A AG+L VP G +L+ AT++LA R+TG G Sbjct 196 DTATALVLGGCALPAAFTAGMLYVPDHYGWAHLLLGGTLLGATAILAWRVTGVGLALFIG 255 Query 237 VACCAVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGL---------S 287 A AV + A LVG +T P+ AIG++A L ++ R+++LLA L + Sbjct 256 TAAVAVYLVPAALVGLLTDQPLRAIGAVAAALGLAGLSLAPRLSMLLAKLPLPPVPSPGT 315 Query 288 PRLPPALNPDDADALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRS 347 P P +PDD ALPT + L ++ RA +L L+AA GA+ A Sbjct 316 PIDPTEDDPDDHRALPTMEALRVKSERARMYLAGLVAATTLVTAAGAL--AATDPQADDP 373 Query 348 SMGGIALAAVTGALLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALT 407 GIALA V +L+ R+R+ V I G + V A +E + T Sbjct 374 YWQGIALALVCAVVLMFRSRTYAGAEQAVVLIAGGAAIVLIMLVGAAFTMEIPLAVFGAT 433 Query 408 AMLAAVAMFLGFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHL 462 ++ A+ LG + P S +P R +ELLE + A++PL W+ YS VR L Sbjct 434 MLMLVAALILGIIIPNQSATPPMRRGVELLEYAFVAAVLPLVFWVTSLYSLVRGL 488 >gi|226365631|ref|YP_002783414.1| hypothetical protein ROP_62220 [Rhodococcus opacus B4] gi|226244121|dbj|BAH54469.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=490 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 148/475 (32%), Positives = 221/475 (47%), Gaps = 31/475 (6%) Query 10 RVTVHAGAQAVDLTLPAAVPVATLIPSIVDIL--------GDRGASPATAARYQLSALGA 61 R+TV + VD+ +P VP+A L+P IVD + D + + L+ +G Sbjct 25 RITVLSKHSQVDMAVPFGVPLAILVPGIVDTIRTNRSTNDFDDSLEQYEPSEWVLAKIGH 84 Query 62 PALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRLS 121 L TL + GIRDG +LVL A P P DD+ VA A R + + R+ Sbjct 85 SPLSTTLTLHEHGIRDGDLLVLQSVHASAPPPLFDDIMYNVAIADVEGDREWTRGSARVV 144 Query 122 GALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIAG 181 G++AA T G L+ + GT AG AA L L+ + R Y D + Sbjct 145 GSVAAVLGTVVGSFALLWSGAGTE----GFLGAGCAVAAALLFLIAGAVTARVYGDAPSS 200 Query 182 LTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACCA 241 + LS A AG+L VPG G +L+ A T++LA+R+ G G TA++ + Sbjct 201 VVLSGCAVPLSFAAGMLFVPGDLGAAHLLLGLALAGTTAILALRLGGAGLRLFTALSVTS 260 Query 242 VVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDDADA 301 + + A LV + P+ +G+ A+ L SAR+++LLA L LPP P + Sbjct 261 LFGSIAALVATLFGNPIAGVGAGVVAAALIGLAFSARVSILLAKLP--LPPVPAPGTSVD 318 Query 302 -----------LPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATH-GIHRSSM 349 +P+ D L RA RA +LT L+ A A A GA+ +A H G+H Sbjct 319 PSEDDPDDEVTMPSFDSLAQRAARAHKYLTGLVGAMTALAVTGAL---LAAHPGVHDGIF 375 Query 350 G-GIALAAVTGALLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTA 408 G++LA T +L+ R R+ + V I G T+ A A+ + A Sbjct 376 WPGLSLAVATATVLMFRGRTYSSAEQAVPLIAGGVTILVLLLTGAAVAVPDFAIASFAVA 435 Query 409 MLAAV-AMFLGFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHL 462 +L AV + LG +AP + SPV R EL++ + ++VPL W+ G YS +R L Sbjct 436 ILFAVGGLVLGILAPRQTFSPVMRRVAELIDLAVIASIVPLVCWVTGLYSLMRGL 490 >gi|312140880|ref|YP_004008216.1| esx cluster integral membrane protein [Rhodococcus equi 103S] gi|311890219|emb|CBH49537.1| putative esx cluster integral membrane protein [Rhodococcus equi 103S] Length=491 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 153/496 (31%), Positives = 220/496 (45%), Gaps = 73/496 (14%) Query 10 RVTVHAGAQAVDLTLPAAVPVATLIPSIVDIL------------GDRGASPATAARYQLS 57 R+T+ +DL LP +VPV L+P I D++ GDR R+ LS Sbjct 26 RLTILTPHSQIDLALPNSVPVELLVPGIADLVEKHSAANDFDVAGDR----LHPTRWVLS 81 Query 58 ALGAPALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRT 117 +G+P L A+TL + G+ DG +LV A PP P DDV VA A A P R Sbjct 82 RVGSPPLSPASTLQEHGVLDGELLVFDSVEASPPPPLFDDVMYNVAVADTGHAHPWTPRI 141 Query 118 TRLSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVA-----AAGLAALLFAVIAC 172 RL+G+ A G +L+R ATA V+ A +A L+ +A Sbjct 142 ARLTGSAIAVAAATAGAFVLLRT---------EGATASVIGAVAAFAMVVAFLVAGAVAG 192 Query 173 RTYRDPIAGLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGI 232 R Y D A LTL A AG L VPG L+ + A +V+A+R G G Sbjct 193 RVYDDAGAALTLGAAALPIAFAAGALFVPGDDLPPDTLLGLVMVGACAVVALRAAGVGHA 252 Query 233 TLTAVACCAVVVAAATLVGAITAAPVPAIGS-LATLASFGLLEVSARMAVLLAGLSPRLP 291 T A +++ + A LV +T ++G+ L A FGL+ + R+A++LA L LP Sbjct 253 VFTTAASVSLLGSLAALVAVLTDQSTRSVGAMLVGGALFGLV-FAPRIAMMLAKLP--LP 309 Query 292 P-----------ALNPDDADALPTTDRLTTRANRADAWLTSLLAAFAASATIGAI--GTA 338 P +PDDA +LP+ + RA A +LT L+A + GA+ Sbjct 310 PVPAPGTSLDPTEEDPDDARSLPSFATVERRAEHARRYLTGLVAGWTLLTVTGALLASAP 369 Query 339 VATHGIHRSSMGGIALAAVTGALLLLRARSADTRRSLVFAICGITTVATAFTVAADRALE 398 A+ GI+ G +LA +L+ R R+ + V I G + V VA Sbjct 370 SASDGIYWP---GTSLAVAAATVLMFRGRTYSSAEQAVPLISGGSAVLMLLAVA------ 420 Query 399 HGPWIAALTAMLAAVAMF------------LGFVAPALSLSPVTYRTIELLECLALIAMV 446 A+ AA+ +F LG V P + SPV R E+++ A+ A+V Sbjct 421 -----TAVVVPSAALPLFATTALLVVAALVLGVVVPQRTFSPVQRRAAEIVDYAAISAVV 475 Query 447 PLTAWLCGAYSAVRHL 462 PL W+ G + AVR L Sbjct 476 PLACWVSGLFVAVRGL 491 >gi|325675482|ref|ZP_08155166.1| hypothetical protein HMPREF0724_12948 [Rhodococcus equi ATCC 33707] gi|325553453|gb|EGD23131.1| hypothetical protein HMPREF0724_12948 [Rhodococcus equi ATCC 33707] Length=489 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 153/496 (31%), Positives = 220/496 (45%), Gaps = 73/496 (14%) Query 10 RVTVHAGAQAVDLTLPAAVPVATLIPSIVDIL------------GDRGASPATAARYQLS 57 R+T+ +DL LP +VPV L+P I D++ GDR R+ LS Sbjct 24 RLTILTPHSQIDLALPNSVPVELLVPGIADLVEKHSAANDFDVAGDR----LHPTRWVLS 79 Query 58 ALGAPALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRT 117 +G+P L A+TL + G+ DG +LV A PP P DDV VA A A P R Sbjct 80 RVGSPPLSPASTLQEHGVLDGELLVFDSVEASPPPPLFDDVMYNVAVADTGHAHPWTPRI 139 Query 118 TRLSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVA-----AAGLAALLFAVIAC 172 RL+G+ A G +L+R ATA V+ A +A L+ +A Sbjct 140 ARLTGSAIAVAAATAGAFVLLRT---------EGATASVIGAVAAFAMVVAFLVAGAVAG 190 Query 173 RTYRDPIAGLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGI 232 R Y D A LTL A AG L VPG L+ + A +V+A+R G G Sbjct 191 RVYDDAGAALTLGAAALPIAFAAGALFVPGDDLPPDTLLGLVMVGACAVVALRAAGVGHA 250 Query 233 TLTAVACCAVVVAAATLVGAITAAPVPAIGS-LATLASFGLLEVSARMAVLLAGLSPRLP 291 T A +++ + A LV +T ++G+ L A FGL+ + R+A++LA L LP Sbjct 251 VFTTAASVSLLGSLAALVAVLTDQSTRSVGAMLVGGALFGLV-FAPRIAMMLAKLP--LP 307 Query 292 P-----------ALNPDDADALPTTDRLTTRANRADAWLTSLLAAFAASATIGAI--GTA 338 P +PDDA +LP+ + RA A +LT L+A + GA+ Sbjct 308 PVPAPGTSLDPTEEDPDDARSLPSFATVERRAEHARRYLTGLVAGWTLLTVTGALLASAP 367 Query 339 VATHGIHRSSMGGIALAAVTGALLLLRARSADTRRSLVFAICGITTVATAFTVAADRALE 398 A+ GI+ G +LA +L+ R R+ + V I G + V VA Sbjct 368 SASDGIYWP---GTSLAVAAATVLMFRGRTYSSAEQAVPLISGGSAVLMLLAVA------ 418 Query 399 HGPWIAALTAMLAAVAMF------------LGFVAPALSLSPVTYRTIELLECLALIAMV 446 A+ AA+ +F LG V P + SPV R E+++ A+ A+V Sbjct 419 -----TAVVVPSAALPLFATTALLVVAALVLGVVVPQRTFSPVQRRAAEIVDYAAIAAVV 473 Query 447 PLTAWLCGAYSAVRHL 462 PL W+ G + AVR L Sbjct 474 PLACWVSGLFVAVRGL 489 >gi|296393782|ref|YP_003658666.1| secretion protein snm4 [Segniliparus rotundus DSM 44985] gi|296180929|gb|ADG97835.1| secretion protein snm4 [Segniliparus rotundus DSM 44985] Length=502 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 137/500 (28%), Positives = 221/500 (45%), Gaps = 52/500 (10%) Query 5 DPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDI-------LGDRGASPATAARYQLS 57 +P L RV V G D+ LP+ VPVA LIP +V + LG G+ ++ L Sbjct 15 EPALCRVAVLGGNAQFDVGLPSEVPVAVLIPDLVALIQTRVPNLGGEGSQNEARNQWTLG 74 Query 58 ALGAPALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTAR---PQC 114 +G +P TLA+ G+ DG +L+L +A+ DDV +AVA R P Sbjct 75 RVGQAPIPLTKTLAEAGVHDGDLLILRAVAAEESPLLFDDVIDAVARVNQHAFRHWGPNA 134 Query 115 QRTTRLSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFA----VI 170 R ++ + AS A L+ + ++ +R+ D + V+ + L F VI Sbjct 135 ARYLGMATLVVASFFAA--RLLFLYGSVAHE-SRFEDFLSPVLLI--VWGLFFHIAGWVI 189 Query 171 ACRTYRDPIAG-LTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGC 229 R ++ IA L + IF V ++ VPG G+ S+ A A ++++ R++ Sbjct 190 GRRYHQHTIANVLCWCGLPFIFFGV--MVCVPGPIGLSSIWAACAVAFVFAIISSRVSLS 247 Query 230 GGITLTAVACCAVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPR 289 G + TAVA A++V A +G+ + ++ +++ + LA L Sbjct 248 GMVQHTAVATLALLVGLAYADMDYFGHSTQVVGAALVCMAIFIISSASKFTIALAKLP-- 305 Query 290 LPP------ALNPDDAD--------------ALPTTDRLTTRANRADAWLTSLLAAFAAS 329 LPP A++ ++ D ALP L RA A+ +LT L+ A + Sbjct 306 LPPVPTAGQAVDAEEIDLHPSVEGIGAIGAMALPNAKDLEQRAKAANNYLTGLVIASSLV 365 Query 330 ATIGAIGTAVATHGIHRSSMGGIALAAVTGALLLLRARS-ADTRRSLVFAICGITTVATA 388 A GA+ A T G L + +L+LR RS D ++ V + G Sbjct 366 AIGGALAAARPT---AEYPWQGPLLGVIVAIVLVLRGRSFTDLVQASVMIVSGFLLFVAL 422 Query 389 FTVAADRALEHGPWIA---ALTAMLAAVA-MFLGFVAPALSLSPVTYRTIELLECLALIA 444 LEH PWIA + +L ++A + +G + P + SPV R E+ E + Sbjct 423 LYAGGRGTLEHQPWIALALGVALVLFSIAFLIIGVIVPNQTYSPVMRRAGEVFEYTLIAL 482 Query 445 MVPLTAWLCGAYSAVRHLDL 464 + PL W+ G YSAVR+++L Sbjct 483 IFPLVFWIMGLYSAVRNIEL 502 >gi|262201637|ref|YP_003272845.1| secretion protein snm4 [Gordonia bronchialis DSM 43247] gi|262084984|gb|ACY20952.1| secretion protein snm4 [Gordonia bronchialis DSM 43247] Length=515 Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 145/505 (29%), Positives = 222/505 (44%), Gaps = 59/505 (11%) Query 2 PTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAA--------- 52 PT +P L RV+V G +D+ LPAA+P+A L+ +V + R S A Sbjct 26 PTIEPALVRVSVLGGNTQLDVALPAAIPLAGLMGDLVAQIESRNPSHHDADDPDADPAGP 85 Query 53 --------RYQLSALGAPALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAA 104 R+ L+ +G LP +L++ GIRDG +L+L + DDV +AVA Sbjct 86 ERRHDRQNRWALALVGREPLPLNRSLSESGIRDGDLLLLTSTRTGESPVLFDDVVDAVAK 145 Query 105 ALDTTARPQCQRTTRLSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAA 164 ++ + R G A + + G R +D T V AGL A Sbjct 146 LNESQFVNWSATSARYVGYGLALLASV-------AASAGVAAFRRTDETLWVAGLAGLLA 198 Query 165 LLF---AVIACRTYRDPIAGLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSV 221 L + I R YRDP++ +S+ A VAG+L PG G V + ++ Sbjct 199 LALITASTIVSRYYRDPLSATIVSLCAMPAVFVAGMLITPGGFGAPHVTLGFALTLLAAI 258 Query 222 LAMRITGCGGITLTAVACCAVVVAAATLVGAITAAPVPAIGSLATLASFGLLEV--SARM 279 ++ R+TG G IT +A+ A + GA+ A + + GLL + + R Sbjct 259 VSYRLTGVGPITHSALTSAA--IGGVLGCGALILVDAAVSDVAAVVTAAGLLVIALAPRA 316 Query 280 AVLLAGLSPRLPP------ALNPDD--------------ADALPTTDRLTTRANRADAWL 319 ++LA L LPP A++ +D A ALP + L R+ A+++L Sbjct 317 TIVLAKLP--LPPVPTAGAAIDIEDVAPRPTIEGIGAIGAMALPKANALERRSFVANSYL 374 Query 320 TSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGALLLLRARS-ADTRRSLVFA 378 T ++ F + A+ TA G + A AA+ GA+L LR RS +D ++ Sbjct 375 TGIVVGFTCVTVVAAVLTAAPLGGFDAKTT---AYAAIVGAVLCLRGRSHSDLFQAATLI 431 Query 379 ICGITTVATAFTVAADRALEHGPWIA-ALTAMLAAVAMFLGFVAPALSLSPVTYRTIELL 437 I G T+ T T A +H P I L ++ A+ G +AP SPV R +E+L Sbjct 432 IGGALTLITLITGLA-FGDDHWPLIGFGLAVLVLCGALVFGVIAPTQEFSPVIRRAVEIL 490 Query 438 ECLALIAMVPLTAWLCGAYSAVRHL 462 E L + +VPL W+ Y VR + Sbjct 491 EYLLVTTIVPLLLWILDLYRIVREI 515 >gi|317506955|ref|ZP_07964724.1| secretion protein snm4 [Segniliparus rugosus ATCC BAA-974] gi|316254713|gb|EFV14014.1| secretion protein snm4 [Segniliparus rugosus ATCC BAA-974] Length=503 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 135/506 (27%), Positives = 223/506 (45%), Gaps = 58/506 (11%) Query 5 DPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDI-------LGDRGASPATAARYQLS 57 +P L RV V G D+ LPA VPVA LIP +V + LG G+ ++ L Sbjct 10 EPALCRVAVLGGNAQFDVGLPAEVPVAVLIPDLVALIQTRVPNLGGEGSQNEARNQWTLG 69 Query 58 ALGAPALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTAR---PQC 114 +G +P TLA+ G+ DG +L+L +A+ DDV +AV+ R P Sbjct 70 RVGQAPIPLTKTLAEAGVYDGDLLILRAVAAEESPLLFDDVIDAVSRVNQHAFRHWGPNA 129 Query 115 QRTTRLSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAV----I 170 R ++ + AS A L+ + ++ + +R+ D A V+ + + F V I Sbjct 130 ARYLGMATLVVASFFAA--RLLFLYGSV-PHESRFEDFLAPVLCI--VWGVFFHVSGWII 184 Query 171 ACRTYRDPIAG-LTLSVIATIFGAVAGLLAVPG------VPGVHSVLVAAMAAAATSVLA 223 R ++ I+ L + IF V +++VPG V G+ SV A ++++ Sbjct 185 GRRYHQHAISNVLCWCGVPFIFFGV--MVSVPGDTSKANVWGLSSVWAACTVTFVIAIIS 242 Query 224 MRITGCGGITLTAVACCAVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLL 283 RI+ G + TA+A +++ A I +G+ A+ ++ ++ A+ L Sbjct 243 SRISTSGTVLHTAIATFTLLLGLAYADMDIFHHSYQVVGAALVCAAIFIISAGSKFAIAL 302 Query 284 AGLSPRLPP------ALNPDDAD--------------ALPTTDRLTTRANRADAWLTSLL 323 A L LPP A++ ++ D ALP L RA ++ +LT L+ Sbjct 303 AKLP--LPPVPTAGQAVDAEEIDLHPSVEGIGAIGAMALPNAKDLEQRAKASNHYLTGLV 360 Query 324 AAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGALLLLRARS-ADTRRSLVFAICGI 382 AS+ I G A G LA + +L+LR RS D ++ V G Sbjct 361 ---IASSLIAIGGALAAARPTAAYPWQGPVLATIVAIVLVLRGRSFTDLVQASVMIGSGF 417 Query 383 TTVATAFTVAADRALEHGPWIA---ALTAMLAAVA-MFLGFVAPALSLSPVTYRTIELLE 438 +L++ PWIA + +L ++A + +G V P + SPV R E+ E Sbjct 418 FLFVALIYGGGRGSLQNQPWIALALGVALVLFSIAFLIIGVVVPNQTYSPVMRRAGEVFE 477 Query 439 CLALIAMVPLTAWLCGAYSAVRHLDL 464 + + PL W+ G YSAVR++++ Sbjct 478 YTLIAFIFPLVFWIMGLYSAVRNIEI 503 >gi|343925122|ref|ZP_08764654.1| hypothetical protein GOALK_033_01130 [Gordonia alkanivorans NBRC 16433] gi|343765053|dbj|GAA11580.1| hypothetical protein GOALK_033_01130 [Gordonia alkanivorans NBRC 16433] Length=514 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 153/513 (30%), Positives = 218/513 (43%), Gaps = 81/513 (15%) Query 5 DPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIV------------------DILGDRGA 46 +P L RV+V G +D+ LPA +P+A LI +V D G RG Sbjct 28 EPQLVRVSVLGGNTQLDVGLPAGIPIAGLIGDLVAQIESRNPTRHDPDDPDADSRG-RGR 86 Query 47 SPATAARYQLSALGAPALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAAL 106 R+ L+ +G LP +L++ GIRDG +L+L + DDV +AVA Sbjct 87 PHDRQNRWTLALVGQEPLPLHRSLSESGIRDGDLLLLTSTRTDESPVLFDDVVDAVARL- 145 Query 107 DTTARPQCQRTTRLSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALL 166 ++ G A S G L LV + S +G + +GL+ L Sbjct 146 ---------NESQFVGWTATSARYVGHALALVAAVVAAAGLAASRIDSGALWLSGLSGLA 196 Query 167 F------AVIACRTYRDPIAGLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATS 220 A I R YRD ++ LSV A V G++ PG G + + T+ Sbjct 197 VIGLVTAATIVARYYRDQLSSTILSVCAAPMAFVTGMILTPGSYGAAHLTLGFALTLVTA 256 Query 221 VLAMRITGCGGITLTAVACCAVVVA----AATLVGAIT---AAPVPAIGSLATLASFGLL 273 V+ R+T G +AV AV+ A A L+ A T AA + A+G L L+ Sbjct 257 VITYRMTAVGATAHSAVTGAAVLGALGCGARLLLDADTSDVAAVMAAVGLL-------LI 309 Query 274 EVSARMAVLLAGLSPRLPP------ALNPDD--------------ADALPTTDRLTTRAN 313 +S R+ +LLA L LPP A++ D A ALP D L R+ Sbjct 310 GLSPRLTILLAKLP--LPPVPTAGAAIDIKDIEPQPSIEGIGAIGATALPKADALERRSY 367 Query 314 RADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGALLLLRARS-ADTR 372 A+A+LT ++ A I A+ TA G S A AA+ G +L LR RS +D Sbjct 368 IANAYLTGIVGGLTAIVAISAVLTAAPLAGFEWKSA---AYAAIIGVVLCLRGRSHSDLF 424 Query 373 RSLVFAICGITTVATAFTVAADRALEHGPW---IAALTAMLAAVAMFLGFVAPALSLSPV 429 ++ + I G V T+ A A G W AL ++ A+ G VAP SPV Sbjct 425 QAAILIIGGSLVV---LTLLAGLAFGDGRWPIISFALGGVVLVAALVFGVVAPHQDFSPV 481 Query 430 TYRTIELLECLALIAMVPLTAWLCGAYSAVRHL 462 R E+ E + + +VPL WL Y VR + Sbjct 482 MRRWAEIGEYILVALIVPLLLWLLDLYRIVREI 514 >gi|256380557|ref|YP_003104217.1| secretion protein snm4 [Actinosynnema mirum DSM 43827] gi|255924860|gb|ACU40371.1| secretion protein snm4 [Actinosynnema mirum DSM 43827] Length=464 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 131/484 (28%), Positives = 212/484 (44%), Gaps = 59/484 (12%) Query 8 LRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQ---LSALGAPAL 64 RVTV A +D+ LPA V VA L+P ++D+ + A+P R+ L+ LG L Sbjct 8 FSRVTVVAPRTRIDVALPADVAVADLLPMLLDM--AKEATPDGGVRHGGWCLAKLGDSPL 65 Query 65 PNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRLSGAL 124 TLA G+ DG +L L K + PP P DDV +A+A + + RP + T R G + Sbjct 66 DPGRTLASLGVVDGELLQLRKRNENPPPPLYDDVVDAIAESDPDSYRPWTKETARKYGHI 125 Query 125 AASCITA------------GGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIAC 172 A + A GGG L + A VVA Sbjct 126 AGALGLAAAAVAVLLAGPVGGGTSLAAAISAGIAAIVAIAAGTVVA-------------- 171 Query 173 RTYRDPIAGLTLSVIATI-FGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGG 231 R+Y G+ + ++ VAGL AVPG G+ ++L+A++ + +A+ + G G Sbjct 172 RSYSATGTGVLIVAAGSLPMAYVAGLYAVPGPVGMANLLLASVLVLIFAAVAILLIGRGI 231 Query 232 ITLTAVACCAVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLP 291 A A + A A L+G P+ I + + S L R+ + LA +LP Sbjct 232 TVFIAAATAGALSAVAFLIGLFVEHPMVGIAAATSAVSLAALSALPRLTIQLA----KLP 287 Query 292 PALNPDDADAL------PTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIH 345 + P +A+ L P + R A +LT ++ + A + A+ A Sbjct 288 LPMVPTNAEDLKEDTGFPEYAVIERRTANAHEYLTGMIIGCGSVAALFAVIAA------G 341 Query 346 RSSMGGIALAAVTGALLLLRARS-ADTRRSL------VFAICGITTVATAFTVAADRALE 398 ++ G LA V +LLLR R+ A+ +++ +FA G+ + DR L Sbjct 342 DGTVFGPILAIVVTLVLLLRGRAYANGAQAVALLVSGMFAGAGVLVGWLVQSSPGDRLL- 400 Query 399 HGPWIAALTAMLAAVAMFLGFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSA 458 ++ ++ AV++ LG + P SPV RT+++LE + + A++PL + Y Sbjct 401 ---FVFGALILVGAVSLVLGVIFPQQKFSPVLRRTVDVLEAILIAAVLPLALAVMDMYVV 457 Query 459 VRHL 462 +R L Sbjct 458 MRQL 461 >gi|54022794|ref|YP_117036.1| hypothetical protein nfa8270 [Nocardia farcinica IFM 10152] gi|54014302|dbj|BAD55672.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=493 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 147/496 (30%), Positives = 224/496 (46%), Gaps = 49/496 (9%) Query 4 SDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDR---------GASPATAARY 54 ++P L RV+V G VD+ LPA VP+AT + +V ++ R GA+P + Sbjct 12 AEPELCRVSVIGGNTQVDVGLPATVPIATFMRDLVALIESRNPDPVDSEEGAAPLETQHW 71 Query 55 QLSALGAPALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQC 114 L+ LG A+P + TL + + DG +LVL +A+ DDV +AV+ Sbjct 72 TLARLGRDAIPPSRTLTEAEVYDGELLVLRSVTAKESPALFDDVIDAVSRLTAEDHHSWS 131 Query 115 QRTTRLSGALAASCITA---GGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIA 171 R+ R +G A+C+T GL V G + A + AGLAA+ AVIA Sbjct 132 PRSARWTG--LAACVTVVLLALGLFAVGRGHGGGL-----AAPFLATGAGLAAVAAAVIA 184 Query 172 CRTYRDPIAG--LTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGC 229 R Y D + L+L+ + FG A L VPG G +++ + +V R TG Sbjct 185 VRKYDDRLTALWLSLTALLLFFGGAA--LFVPGELGSPHLMLGCSVSLVIAVGLYRATGV 242 Query 230 GGITLTAVACCAVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPR 289 G A A+ A LV + P+P I + + LL + R+A + A L Sbjct 243 GATLCAAAVTLALFGGVAALVRMVWDTPLPRIAVGLLVGAIILLSMIPRLAAVAARLP-- 300 Query 290 LPP------ALNPDDADALPTTD--------------RLTTRANRADAWLTSLLAAFAAS 329 +PP A++P D + PT + L RA A+ + T ++ A Sbjct 301 VPPVPTAGAAIDPADHEQRPTIEGIGAIGATALPSAVGLGERARAANQYQTGMVIGAAVV 360 Query 330 ATIGAIGTAVATHGIHRSSMGGIALAAVTGALLLLRARS-ADTRRSLVFAICGITTVATA 388 A +GA+GTA + G+ LA +T +L LR R+ AD ++ + G + +A Sbjct 361 AAVGALGTA---DPLGHVRWQGLTLAVITAIILCLRGRAFADLVQAGTLIVAGASVIAGL 417 Query 389 FTVAADRALEHGPWIAALTAMLAAVAMFLGFVAPALSLSPVTYRTIELLECLALIAMVPL 448 T A L LAA + G + P + ++PVT R E+ E L + A++PL Sbjct 418 LTALAFGDSGLWLLSGGLLLALAAAVVAFGVIGPHIEITPVTRRAGEIFEYLLICAIIPL 477 Query 449 TAWLCGAYSAVRHLDL 464 WL G YS R+L+L Sbjct 478 ALWLLGIYSMARNLNL 493 >gi|257054508|ref|YP_003132340.1| secretion protein snm4 [Saccharomonospora viridis DSM 43017] gi|256584380|gb|ACU95513.1| secretion protein snm4 [Saccharomonospora viridis DSM 43017] Length=464 Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 133/477 (28%), Positives = 205/477 (43%), Gaps = 41/477 (8%) Query 8 LRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAAR---YQLSALGAPAL 64 RVTV A +D+ LPA V VA L+P ++++ + SP AR + L+ LG L Sbjct 8 FSRVTVVAPRTRIDVALPADVAVADLMPMLLEMA--KEVSPDGGARHGGWALAKLGDAPL 65 Query 65 PNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRLSGAL 124 + TLA GI DG +L L K + PP P DDV +A+A A + RP + T + G + Sbjct 66 DPSRTLASLGIVDGELLQLRKRNENPPPPLYDDVVDAIAEAEPDSFRPWTKETAQRIGHV 125 Query 125 AAS-------CITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRD 177 A GG + N L + TAGV A LA + + Y Sbjct 126 AGGLALFCAALALFFGGPLYGGNGLAVAI------TAGVAA---LACVAVGATLAKAYNA 176 Query 178 PIAGLTLSVIATI-FGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTA 236 P G+ ++ + V+G VP ++L+A+ + + + G G T A Sbjct 177 PATGVVIAAAGGLPLAFVSGFYIVPDGTIRANLLLASALVVVVAAACILLMGAGITTFIA 236 Query 237 VACCAVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLS-PRLPPALN 295 A V A L+ + A P P I + A+ + + R + LA L P +P Sbjct 237 AATAGVFGVIAFLIATLIAHPAPGIAAGVAAAALAGISMLPRATIWLAKLPLPHVPSTAE 296 Query 296 PDDAD-ALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIAL 354 D P + + A ++T LL + + A+ TA + + GI Sbjct 297 ELKEDTGYPDYSSIERKTKAAHNYMTGLLIGSGSVTAVAAMITATS------GDIWGILT 350 Query 355 AAVTGALLLLRARS-ADTRRSLVFAICGITTVATAF------TVAADRALEHGPWIAALT 407 A V +LLLRAR+ A+ +++ G+ + A A DR L W+ Sbjct 351 AVVATLVLLLRARTYANGSQAVALLTTGMASAAGILLGWMWTEEANDRVL----WVFGTI 406 Query 408 AMLAAVAMFLGFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDL 464 +L A A+ LG V P +P R +E+ E + A++PL + G YS +RHLD+ Sbjct 407 LLLGAAALVLGVVFPNQRFTPPMRRAVEIFEAACIAAVLPLALAVMGLYSTLRHLDI 463 >gi|226305379|ref|YP_002765337.1| hypothetical protein RER_18900 [Rhodococcus erythropolis PR4] gi|226184494|dbj|BAH32598.1| hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=500 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 147/481 (31%), Positives = 217/481 (46%), Gaps = 46/481 (9%) Query 10 RVTVHAGAQAVDLTLPAAVPVATLIPSIVDIL--------GDRGASPATAARYQLSALGA 61 R+TV + VDL +P VP+A +IP IVD + D A + LS +G Sbjct 38 RLTVLSAHSQVDLAVPLRVPLAVVIPGIVDTIVNHSNFNEFDHSAEQFEPVDWTLSKVGR 97 Query 62 PALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRLS 121 L +L + GIRDG +LVL + P P DD+ VAA R T R+ Sbjct 98 APLAPTLSLHEHGIRDGELLVLAAADTAAPPPLFDDIMYTVAATDADIYRRWTPITARIV 157 Query 122 GALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAA--AGLAALLF---AVIACRTYR 176 G+ AA G++ A G+ +L+ AV+A R Y Sbjct 158 GSSAALVAAL------------VAALALVLGDTGLIGAVCGGVTSLVLTVAAVVAARVYG 205 Query 177 DPIAGLTLSVIATIFGAVAGLLAVPG-VPGVHSVLVAAMAAAATSVLAMRITGCGGITLT 235 D + +TL A V+G L VPG V H +L +A AAA T ++ +R+ G G T Sbjct 206 DTASSITLGCTAVPLAFVSGALCVPGTVLSAHLLLGSAFAAAVT-LICLRLCGAGLAVFT 264 Query 236 AVACC-----AVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLS-PR 289 A+ A TL A TA + S A+ +L +AR+++L A L P Sbjct 265 ALLVVLLAAVGTFAVATTLPEARTAT----VSSAVIAAALIVLTFTARLSMLFARLPLPP 320 Query 290 LPPALNP--DDADALPTTD-----RLTTRANRADAWLTSLLAAFAASATIGAIGTAVATH 342 +P NP DD D LP + LT RA RA ++LT L+ A + A A+ A + Sbjct 321 VPTPSNPLDDDRDGLPEPELPGLTELTERAGRARSYLTGLIVATSVVALTAAVALAWSWP 380 Query 343 GIHRSSMGGIALAAVTGALLLLRARS-ADTRRSLVFAICGITTVATAFTVAADRALEHGP 401 G +ALA T +L+ R R+ A +++ GI+ V A +H Sbjct 381 G-QGIVWPNLALAFATAVVLMFRGRTYAGAHQAVPLISAGISVVLALLGGMAWTHRDHAL 439 Query 402 WIAALTAMLAAVAMFLGFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRH 461 + A+T + +++ LG +AP + SPV R ELL+ A+ A+VPL W+ G ++ +R Sbjct 440 VVFAITMTVLLLSLILGILAPQNTFSPVMRRAAELLDLAAIAAIVPLICWVSGLFALMRG 499 Query 462 L 462 L Sbjct 500 L 500 >gi|302524033|ref|ZP_07276375.1| predicted protein [Streptomyces sp. AA4] gi|302432928|gb|EFL04744.1| predicted protein [Streptomyces sp. AA4] Length=466 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 134/491 (28%), Positives = 209/491 (43%), Gaps = 51/491 (10%) Query 1 MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAAR---YQLS 57 M T RVTV A +D+ LPA V VA L+P ++++ + +P AR + L+ Sbjct 1 MATGTTVFSRVTVVAPTTRIDVALPADVAVADLLPMLLEM--AKEVTPDGGARHGGWALA 58 Query 58 ALGAPALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRT 117 LG L + TLA G+ DG +L L K + PP P DDV +A+A A T RP + T Sbjct 59 KLGDAPLDPSRTLASLGVVDGELLQLRKRNENPPPPMYDDVVDAIAEADPDTFRPWTKET 118 Query 118 TRLSGALAASCITAGGGLMLVRNALGTNV--TRYSDATAGVVAAAGLAALLFAVIAC--- 172 R G A GGL L +AL + Y + G A GL A IAC Sbjct 119 ARRFG-------HAAGGLALFFSALALFFSGSLYGGSALGPAIAGGLGA-----IACVAV 166 Query 173 -----RTYRDPIAGLTLSVIATI-FGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRI 226 + Y+ G+ ++ + V+G VPG+ ++L+ A+ S + + + Sbjct 167 GATLAKAYQAEATGVLIASAGGLPLAFVSGFYIVPGLSVRANLLLGAVLVLIVSAVCILV 226 Query 227 TGCGGITLTAVACCAVVVAAATLVGA-ITAAPVPAIGSLATLASFGLLEVSARMAVLLAG 285 G A A V A A LV +T+A ++ + + G + R + LA Sbjct 227 VSAGIRVFIATATAGVFGALAFLVATLVTSADTASVAAGTVAVALGCISFLPRATIWLAK 286 Query 286 LS-PRLPPALNPDDADA-LPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHG 343 L P +P D+ P + R A ++T L+ GA A Sbjct 287 LPLPYVPSTAEELKEDSGFPDYQAIEQRTAVAHDYMTGLMIG------CGATTAVAAILA 340 Query 344 IHRSSMGGIALAAVTGALLLLRARS-ADTRRSLVFAICGITTVA------TAFTVAADRA 396 ++ GI L + +LLLRAR+ A+ +++ G+ A F+ A++ Sbjct 341 ATAPNVFGIILGVIATLVLLLRARAYANGAQAIALLTTGMVAAAGILLGWLFFSATAEQR 400 Query 397 LEH--GPWIAALTAMLAAVAMFLGFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCG 454 L + G I A L +F P SP RT+E++E + + ++PL + Sbjct 401 LLYVFGALILIAAAALVVGVVF-----PDQRFSPPLRRTVEIIEAICIAVVLPLALGVMD 455 Query 455 AYSAVRHLDLT 465 YS +RHL+L Sbjct 456 LYSTLRHLNLK 466 >gi|333991914|ref|YP_004524528.1| hypothetical protein JDM601_3274 [Mycobacterium sp. JDM601] gi|333487882|gb|AEF37274.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=396 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 151/470 (33%), Positives = 204/470 (44%), Gaps = 81/470 (17%) Query 1 MPTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDIL-GDRGASPATAARYQLSAL 59 M +D GLRRV V+A A DL LPAAVPVA L+ ++VD++ G G PA+ L Sbjct 1 MAGADSGLRRVAVYADAGHADLALPAAVPVALLVGAVVDLVSGTDGPQPASGPTGPL--- 57 Query 60 GAPALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTR 119 P P LAQ G +PP LD Sbjct 58 --PLRPY--RLAQPG--------------RPP--------------LDG----------- 74 Query 120 LSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPI 179 S L I G L+L R R+ D V A A A +R Sbjct 75 -SKTLGQQGICDGAVLVLTRADDVAPEPRFDDPAEQVAAGA--------RAATHPWRPAA 125 Query 180 AGLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVAC 239 LT ++ A+ VAG +AVPG PG +VL+A AA +V+A+ +GC G T + C Sbjct 126 RRLTAALAASGLAGVAGFVAVPGEPGAPNVLLAMAAAGTVAVMAVPSSGCAGTTRAMLCC 185 Query 240 CAVVVAAATLVGAITAA---PVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNP 296 A +V A + G + AA V A+G++A GL+ V+ R+A+L AGLS R Sbjct 186 LAGLVMLAAVAGTVCAATGVSVQALGAVAAAGGLGLIRVAGRIAMLGAGLSQR------- 238 Query 297 DDADALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATH--GIHRSSMGGIAL 354 PT + A A L L+A A+ +GA G A G+ + Sbjct 239 ------PT----ASHAVAAHDLLCGLIAGATAAVVLGAAGVAAGEPVAGLPGPVGVAFVV 288 Query 355 AAVTGALLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVA 414 AA LL R+ + + + + A + A D A H PW A + + A Sbjct 289 AAGAALLLRARSHTDGAQIATLLAGGAAAMGIAVLSAALDEA-PHRPWPAVVAVAASGAA 347 Query 415 MFLGFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDL 464 + LGF AP SP+ R E+LE +AL A+VPL WLCG Y AVR L+L Sbjct 348 VVLGFTAPI--RSPLARRGAEVLESMALGALVPLACWLCGLYGAVRGLNL 395 >gi|229489514|ref|ZP_04383377.1| secretion protein Snm4 [Rhodococcus erythropolis SK121] gi|229323611|gb|EEN89369.1| secretion protein Snm4 [Rhodococcus erythropolis SK121] Length=488 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 143/489 (30%), Positives = 214/489 (44%), Gaps = 62/489 (12%) Query 10 RVTVHAGAQAVDLTLPAAVPVATLIPSIVDIL--------GDRGASPATAARYQLSALGA 61 R+TV + VDL +P VP+ +IP IVD + D + LS +G Sbjct 26 RLTVLSAHSQVDLAVPLRVPLTVVIPGIVDTIVNHSNFNEFDHTTEQFEPVDWTLSKVGR 85 Query 62 PALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRLS 121 L +L + GIRDG +LVL S P P DD+ VAA R T R+ Sbjct 86 APLAPTLSLHEHGIRDGELLVLEASDTAAPPPLFDDIMYTVAATDADVYRRWTPVTARIV 145 Query 122 GALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAA--AGLAALLF---AVIACRTYR 176 G+ AA G++ A G+ +L+ AV+A R Y Sbjct 146 GSTAALVAAL------------VAALALVLGDTGLIGAVCGGVTSLVLTVAAVVAARVYG 193 Query 177 DPIAGLTLSVIATIFGAVAGLLAVPG-VPGVHSVLVAAMAAAATSVLAMRITGCGGITLT 235 D + +TL + V+G L VPG V H +L +A AAA T ++ R+ G G T Sbjct 194 DSASSVTLGCASVPLAFVSGALCVPGTVLSAHLLLGSAFAAAVT-LICFRLCGAGLAVFT 252 Query 236 -------------AVACCAVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVL 282 AV AT+ GA+ AA + +L +AR+++L Sbjct 253 ALLVVLLAAVGTFAVTTTLPEARTATVSGAVIAA------------ALIVLTFTARLSML 300 Query 283 LAGLS-PRLPPALNP--DDADALPTTD-----RLTTRANRADAWLTSLLAAFAASATIGA 334 A L P +P NP DD D LP + L RA RA ++LT L+ A + A + A Sbjct 301 FARLPLPPVPTPSNPLDDDRDGLPEPELPGLTELAERAGRARSYLTGLIVATSVVALVAA 360 Query 335 IGTAVATHGIHRSSMGGIALAAVTGALLLLRARS-ADTRRSLVFAICGITTVATAFTVAA 393 + A + G +ALA T +L+ R R+ A ++++ GI+ + A Sbjct 361 VALAWSWPG-QGIVWPNLALAFATAVVLMFRGRTYAGAQQAVPLIAAGISVILVLLGDMA 419 Query 394 DRALEHGPWIAALTAMLAAVAMFLGFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLC 453 +H + A+T + +A+ LG +AP + SPV R ELL+ A+ A+VPL W+ Sbjct 420 WTHRDHALVVFAITMTVLLLALILGILAPQNTFSPVMRRAAELLDLAAIAAIVPLICWVS 479 Query 454 GAYSAVRHL 462 G ++ +R L Sbjct 480 GLFALMRGL 488 >gi|300782649|ref|YP_003762940.1| integral membrane protein [Amycolatopsis mediterranei U32] gi|299792163|gb|ADJ42538.1| integral membrane protein [Amycolatopsis mediterranei U32] gi|340524020|gb|AEK39225.1| integral membrane protein [Amycolatopsis mediterranei S699] Length=454 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 118/468 (26%), Positives = 203/468 (44%), Gaps = 27/468 (5%) Query 11 VTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAAR---YQLSALGAPALPNA 67 +TV A + +D+ LPA V VA L+P ++D+ + +P AR + L+ LG L + Sbjct 1 MTVVAPSTRIDVALPADVAVADLLPMLLDM--AKETAPDGGARHGGWALAKLGDAPLDPS 58 Query 68 TTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRLSGALAAS 127 TLA G+ DG +L L K + PP P DDV +A+A + + RP + T G +A Sbjct 59 RTLASLGVVDGELLQLRKRNENPPPPLYDDVVDAIAESSPDSFRPWTKETANRFGHVAGG 118 Query 128 CITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYR-DPIAGLTLSV 186 + L + G+ + A +A + + Y+ +P L + Sbjct 119 LALFAAAVALFMS--GSFYGGSALGAAIAGGIGAVACVAIGATLAKGYQAEPTGVLIAAA 176 Query 187 IATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACCAVVVAA 246 V+G VPG+ ++L+ A+ + + + + G G T A A A Sbjct 177 GGLPLAFVSGFYIVPGLSLRANLLLGAVLVIIVASVCIMVIGAGITTFIAAATAGTFGAL 236 Query 247 ATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLS-PRLPPALNPDDADA-LPT 304 A L G + A P I + + + + R + LA L P +P D+ P Sbjct 237 AFLFGTLVAHPAAGIAAGTVAVALACISILPRATIWLAKLPLPHVPSNAEELKEDSGFPD 296 Query 305 TDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGALLLL 364 + R A ++T L+ GA A GI L V +LLL Sbjct 297 YRAIERRTAIAHNYMTGLMVG------CGATVAVSAIIAASAPGTFGIILGVVATLVLLL 350 Query 365 RARS-ADTRRSLVFAICGI---TTVATAFTVAA---DRALEHGPWIAALTAMLAAVAMFL 417 RAR+ A+ +++ G+ T +A + ++A +R L ++ + +LAA A+ + Sbjct 351 RARAYANGSQAIALLTTGLVSATGIAVGWLISASAQNRLL----YVFGVLILLAAGALVV 406 Query 418 GFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDLT 465 G + P SP RT+E++E + + +++PL + Y+ +RHL+ Sbjct 407 GVIFPNQRFSPPLRRTVEIIEAICIASVLPLALGVMDLYTTLRHLNFK 454 >gi|254776823|ref|ZP_05218339.1| hypothetical protein MaviaA2_19451 [Mycobacterium avium subsp. avium ATCC 25291] Length=149 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 80/154 (52%), Positives = 94/154 (62%), Gaps = 6/154 (3%) Query 311 RANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGALLLLRARSAD 370 RA RAD WLT LLA ++SAT+ A T +A G R +A TGALLLLR+R D Sbjct 1 RARRADRWLTGLLAGLSSSATVAAAVTVLA--GAPRLCC--LAFGTGTGALLLLRSRGGD 56 Query 371 TRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLGFVAPALSLSPVT 430 R+LVFA GI T AT F V A RA GPW+AA TA L A A++LG A + SPV Sbjct 57 GTRALVFAAGGIVTTATTFAVVAWRAPLPGPWVAATTATLVAAALYLG--CAARTCSPVL 114 Query 431 YRTIELLECLALIAMVPLTAWLCGAYSAVRHLDL 464 R +LLE LAL A+VPLT W+ G Y VR L L Sbjct 115 SRAADLLEWLALAALVPLTCWIAGLYGTVRGLTL 148 >gi|333921709|ref|YP_004495290.1| hypothetical protein AS9A_4056 [Amycolicicoccus subflavus DQS3-9A1] gi|333483930|gb|AEF42490.1| hypothetical protein AS9A_4056 [Amycolicicoccus subflavus DQS3-9A1] Length=459 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 142/473 (31%), Positives = 207/473 (44%), Gaps = 42/473 (8%) Query 16 GAQAVDLTLPAAVPVATLIPSIVDILGDRGASP------ATAARYQLSALGAPALPNATT 69 G VDL LP +VP+ ++P + +I+ R + P A+AA++ LS LG L + Sbjct 3 GHTQVDLALPDSVPLLLILPRLSEIVHCRASGPDTPSTTASAAQWTLSRLGEGPLDLDLS 62 Query 70 LAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRLSGALAASCI 129 LA+ G+R G VLVL PP P DDV EAVA + +A T L+ S + Sbjct 63 LARLGVRSGEVLVLSPVGEAPPAPLFDDVIEAVA---EHSAPKDATWTVGRGRKLSYSAM 119 Query 130 TAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIAG-LTLSVIA 188 + A + A AGV + L AL AV A R +G L LS I Sbjct 120 LGAALAASLVLATSEPLAHLQLALAGVFLSPVLFAL--AVAAQRHCGATASGVLLLSAIP 177 Query 189 TIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACCAVVVAAAT 248 +VA L +PG G ++ A ++L +R L AV V A Sbjct 178 VAAASVAHL--IPGNMGAPHLIAGGAVGATMALLGLRTFPLAAALLLPAFGTAVTVGFAA 235 Query 249 LVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNP----DDADALPT 304 ++ + I + A+ + + R+A+L A L +PP P D ADA+ Sbjct 236 MLNLVAGLGPATIAATLIAATPFAVAAAPRLAMLGARLP--IPPVPAPGTALDVADAIHE 293 Query 305 TDR-------LTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGG------ 351 L +A A+ ++T ++ AT+ A+G A A + M G Sbjct 294 DGSNDTPHVTLCQKAQAAERFVTGVI------ATVTAVGAASAIVIASLAVMSGELPLPL 347 Query 352 IALAAVTGALLLLRARS-ADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAML 410 L A+ A L LR RS A T +L+ G +A + +AA + + P + L A+L Sbjct 348 AILTAIVAAALSLRGRSIAATVPALLVTGTG-AFMAVSVLIAATLSAQVPPDLLFLAAIL 406 Query 411 AAVAMF-LGFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHL 462 V F G +AP S +P+ YR EL E L A+VP+ W G YSA+R L Sbjct 407 VLVLAFVFGTLAPGRSYTPLQYRLAELTEYGLLAAIVPVACWALGVYSAIRGL 459 >gi|120402457|ref|YP_952286.1| hypothetical protein Mvan_1446 [Mycobacterium vanbaalenii PYR-1] gi|119955275|gb|ABM12280.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=447 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 146/467 (32%), Positives = 206/467 (45%), Gaps = 58/467 (12%) Query 8 LRRVTVHA----GAQAVDLTLPAAVPVATLIPSIVD-ILGDRGASPATAARYQLSALGAP 62 LRRV VHA A A DL LPA P+A L+PSIVD + G P ++QL+ Sbjct 28 LRRVAVHALGPREAAAADLVLPAEQPLAELVPSIVDTVFG----GPVGPRQWQLATPAGV 83 Query 63 ALPNATTLAQCGIRDGAVLVLHKSSAQPP----TPRCDDVAEAVAAALDTTARPQCQRTT 118 L ++ +L + DG V+VL + PP T C VA+A A T R Sbjct 84 PLDSSMSLRDNVVEDGDVIVLTTARVPPPRLLPTDPCAVVADA--AEKGTPGR----GVN 137 Query 119 RLSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDP 178 R +GA A + L+ A T+ + AA L+ +P Sbjct 138 RAAGA--AGIVACAVALVWSGTAAPTHWHLWC--------AAALSGSAAVGAVAAARAEP 187 Query 179 IAGLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVA 238 LS A +F AGLLAV P +VL+A+ A SVL +R+ + LTA Sbjct 188 ELTALLSTAAVVFATAAGLLAVRSAPWPATVLLASSAGFCMSVLLLRLVADRAL-LTAFT 246 Query 239 CCAVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDD 298 AA + + A+PV G+ S L V+ ++AV+ AG P+ Sbjct 247 AAGGAATAAAGLANLAASPV-TAGAALAALSTAALSVAPKLAVVTAG----------PEP 295 Query 299 ADALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVT 358 A A T LT L+A ++A+A G + A S++ AA Sbjct 296 AAAHST--------------LTGLVAGWSATAAAGGVTVAAVAGPAESSTILAALFAADL 341 Query 359 GALLLLRARS-ADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFL 417 G LL+LR RS R + G ++ AFTV A H PW+ A A+L +A+ Sbjct 342 GGLLVLRTRSHVVVHRRIALGAAGSVSLLAAFTVTVVAAPVHAPWLCACAAVLCVLAVR- 400 Query 418 GFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHLDL 464 G +PA S +P+ +R I++ E AL+A+VPL W+ G Y VR L L Sbjct 401 GAGSPA-SPNPLAHRMIQVTEYAALVALVPLAFWVSGIYGLVRQLSL 446 >gi|134103221|ref|YP_001108882.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338] gi|291003831|ref|ZP_06561804.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338] gi|133915844|emb|CAM05957.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338] Length=481 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 126/488 (26%), Positives = 205/488 (43%), Gaps = 44/488 (9%) Query 8 LRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQ---LSALGAPAL 64 RVTV A +DL LPA V VA L+P ++++ R A+P +R+ L+ L L Sbjct 8 FSRVTVVAPTTRIDLALPADVSVADLLPMLLEM--AREATPDGGSRHGGWCLAKLSGDEL 65 Query 65 PNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRLSGAL 124 + TLA GI DG +L L + S PP P DDV +A+A A + RP + T + G + Sbjct 66 DPSQTLASLGIVDGDMLQLRRRSDNPPPPLYDDVVDALAEAEPGSYRPWTKETAQKLGHI 125 Query 125 AASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAV---------IACRTY 175 + + + D+T +V A + AV + R Y Sbjct 126 SGVLGLVAAAAAIGVAGPAGMLHPELDSTLAMVYQIVAAVVGVAVAILATGVGSMVTRAY 185 Query 176 RDPIAGLTLSVIATIFG----AVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGG 231 A T +VIA G V G VPG +L+A+ + +++ + G G Sbjct 186 G---ASTTGTVIAAAGGLPMAFVGGFNIVPGSSLAPRLLLASALVLIFAAISIMVIGAGI 242 Query 232 ITLTAVACCAVVVAAATLVGAITAAPVP-------AIGSLATLASFGLLEVSARMAVLLA 284 +T A A V+A + + A VP I + A + + R+ + LA Sbjct 243 VTFIAAAT----VSAFGTIAFVIATLVPRAETHAAGIAAGAAAVGLAGISLLPRITIQLA 298 Query 285 GLS-PRLP-PALNPDDADALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATH 342 L P +P A + + P ++ + A ++T L+ +A IGAI +A Sbjct 299 KLPLPHVPGSAEDLKEDQGFPDYRQIERQTGLAHRYMTGLIIGCGLTAAIGAILSAAG-- 356 Query 343 GIHRSSMGGIALAAVTGALLLLRARSADTRRSLVFAICGITTVATAFTVAADRALEHGP- 401 ++ G ++AV A+LLLR R+ + + A + + P Sbjct 357 ----PAVWGPLMSAVVSAVLLLRGRNYANGSQAIALLLCGLLAALGVGIGLIVQVALSPL 412 Query 402 ---WIAALTAMLAAVAMFLGFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSA 458 W+ +L +A+ G V P SPV R +++LE + + ++PL + Y A Sbjct 413 WVAWVFPPLLLLGVLALVFGVVFPNRRFSPVQRRMVDILEAVLIALVLPLAFGVMDLYMA 472 Query 459 VRHLDLTW 466 VR L+L + Sbjct 473 VRDLNLNF 480 >gi|254776821|ref|ZP_05218337.1| hypothetical protein MaviaA2_19441 [Mycobacterium avium subsp. avium ATCC 25291] Length=146 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/92 (53%), Positives = 60/92 (66%), Gaps = 3/92 (3%) Query 22 LTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALGAPALPNATTLAQCGIRDGAVL 81 ++LPA + VA LIPS+VD+LG A A RY+LSA GA AL +TTLA I DGA+L Sbjct 1 MSLPAEIAVAELIPSLVDMLG---AGDGGAGRYRLSAPGAAALDPSTTLAHNHIGDGAIL 57 Query 82 VLHKSSAQPPTPRCDDVAEAVAAALDTTARPQ 113 VL + P PR D+A+ V+AALD TA P Sbjct 58 VLSRIDVPLPAPRYRDIADTVSAALDATAGPD 89 >gi|297153986|gb|ADI03698.1| hypothetical protein SBI_00577 [Streptomyces bingchenggensis BCW-1] Length=466 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 139/481 (29%), Positives = 203/481 (43%), Gaps = 55/481 (11%) Query 10 RVTVHAGAQAVDLTLPAAVPVATLIPSIVDILG-DRGASPATAARYQLSALGAPALPNAT 68 R+TV A A++VDL +P+ VPVA L+P+++ G D G + L LG + Sbjct 11 RLTVRAPAKSVDLAVPSDVPVADLLPAVLGYGGEDLGEDGVDHGGWVLQRLGGGPMDEER 70 Query 69 TLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTT-ARPQC---QRTTRLSGAL 124 TL +RDG L L + P DD+ VA DT +RP + + RL L Sbjct 71 TLDSYDLRDGETLYLRPRTEALPEAHLDDL---VAGISDTMRSRPYGWTPEASRRLLLGL 127 Query 125 AASCITAGGGLMLVRNAL---GTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIAG 181 A + +TAG LV AL V A G++ AG A A R D AG Sbjct 128 AVTVLTAG----LVVLALPGGSVGVRAVCAAVTGLLLVAGAGA------ASRAVGDAGAG 177 Query 182 LTLSVIATIFGAVAGLLAVPG--VPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVAC 239 TL +A + A AG L +PG + G H A + +LA + G GG + A Sbjct 178 ATLGFMAAPYLAFAGWL-LPGGDITGAH-----ANEVVGSRLLASCVAGAGGAIVVLAAV 231 Query 240 CAVVVAA-ATLVGAITAAPVPAIGSLATLASFGLLEVSARMAVLLAGLSPRLPPALNPDD 298 A T V A+ A + A LA + + A AV+L P L ++ Sbjct 232 AAYAALFLGTGVVAVFGAITGTLMITADLAPHHVAGIIALAAVVLGAFVPSLSFRMSGLK 291 Query 299 ADALPTTDR-------------LTTRANRADAWLTSLLAAFAAS--ATIGAIGTAVATHG 343 LPT + + R AD W++SL A A+ A +GA+ Sbjct 292 VPPLPTNAQQLQEGIEPHPTAAVAGRTALADGWMSSLYGAVGATCAACLGALA------- 344 Query 344 IHRSSMGGIALAAVTGALLLLRARS-ADTRRSLVFAICGITTVATAFTVAAD-RALEHGP 401 +++ + V LL+L AR +T + L + G+ + V A+ A + P Sbjct 345 -WYANLPSVLTVVVLSLLLMLHARGLGNTWQRLSLTLPGVAGLLLLILVGAESYAPDRRP 403 Query 402 WIAALTAMLAAVAMFLGFVAPALSLSPVTYRTIELLECLALIAMVPLTAWLCGAYSAVRH 461 +AA L AV + + P L P R E+L L ++++PL W G YSA+R Sbjct 404 LVAAGLLGLTAVIAIVSWTVPGRRLVPYWGRAAEILHYLMALSLLPLVLWALGVYSALRG 463 Query 462 L 462 L Sbjct 464 L 464 >gi|120401109|ref|YP_950938.1| hypothetical protein Mvan_0081 [Mycobacterium vanbaalenii PYR-1] gi|119953927|gb|ABM10932.1| protein of unknown function DUF571 [Mycobacterium vanbaalenii PYR-1] Length=508 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 145/515 (29%), Positives = 217/515 (43%), Gaps = 84/515 (16%) Query 6 PGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGA-SPATA-ARYQLSALG--- 60 P RVT+ G + DL LP+A P+ T + V +L D A +P A + A G Sbjct 18 PTTTRVTILTGRRMTDLVLPSAAPIETYVDETVSVLADILADTPENVLADFDFKAQGVWS 77 Query 61 -----APALPNATTLAQCGIRDGAVL-VLHKSSAQPPTPRCDDVAEAVAAALDTTARPQC 114 AP + +L G+ DG++L V+ S + P +DV +A+A LD T P+ Sbjct 78 FARPGAPPIKLTESLDDAGVVDGSLLTVVSVSRTERYRPLVEDVIDAIAV-LDET--PEF 134 Query 115 QRT--TRLSG------ALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALL 166 R+ R G A +C+ +L ++ G + + A A V AGL Sbjct 135 DRSALYRFVGLILPLAAFMVACVA-----ILSWSSTGRD---WWWAVALGVLGAGLMG-- 184 Query 167 FAVIACRTYR--DPIAGLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAM 224 +V+A YR D L +S + T+ GAV +LAVP GV S+ +A A VL M Sbjct 185 GSVLAQNRYRHLDMAESLLVSSLVTLVGAV--VLAVPLPEGVDSLGAPQVAGAGALVLLM 242 Query 225 RITGCGGITLTA-VACCAVVVAAATLVGAITAAP-----VPAIGSLATLASFGLLEVS-- 276 + GG A VA V+A A + A+ VPA G++A FGL+ V+ Sbjct 243 VLATRGGPRRRAEVAAFLAVIALALTIAAVAFGYGWNDWVPA-GAIA----FGLIVVTNA 297 Query 277 ARMAVLLAGLSPRLPP-------ALNPDDADALPTTD--------------------RLT 309 A++ V +A ++ LPP N + D + TTD RLT Sbjct 298 AKLTVAVARIA--LPPIPAPGETVTNDELLDPVTTTDASEESETWQAIIASVPSSAARLT 355 Query 310 TRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGALLLLRARSA 369 R+ A L L+A A G+I V H S + +A + L R+R Sbjct 356 ERSRLAKRLLIGFLSAGALILAAGSIAVVVQGHFFLHSMI----VAGLVTMLCGFRSRLY 411 Query 370 DTRRSLVFAICGITTVATAFTVAADRALEHGPWI--AALTAMLAAVAMFLGFVAPALSLS 427 R + V T V W+ A TA+ + +G +S Sbjct 412 AERWCAWALMAAAVAVPTGVVVRLCLWYPERAWLLLAIYTALALLAVIVIGASEGVRRIS 471 Query 428 PVTYRTIELLECLALIAMVPLTAWLCGAYSAVRHL 462 PVT R +ELL+ + A++P+ W+ G Y +R+L Sbjct 472 PVTKRILELLDGATIAAVIPMLLWIAGVYDVLRNL 506 >gi|291444830|ref|ZP_06584220.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291347777|gb|EFE74681.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length=447 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/133 (40%), Positives = 71/133 (54%), Gaps = 7/133 (5%) Query 3 TSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGAS-PATAARYQLSALGA 61 TS L RVT+ + D+ LP+ P+ L+P I+ +L DR AS P T QL Sbjct 2 TSRSELSRVTLVGERRRADIVLPSDTPIGQLLPDILQLLDDRAASRPLT---RQLITSDG 58 Query 62 PALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTA---RPQCQRTT 118 ALP+ +TLA G+ DGAVL L ++ A PP P DV + VA LD A RP +R + Sbjct 59 SALPHDSTLASAGVSDGAVLRLVRTHAAPPAPVVHDVTDQVADHLDLQAWRWRPAARRVS 118 Query 119 RLSGALAASCITA 131 + +A S I A Sbjct 119 AGASTVAFSVIAA 131 >gi|239987847|ref|ZP_04708511.1| hypothetical protein SrosN1_11115 [Streptomyces roseosporus NRRL 11379] Length=447 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/133 (40%), Positives = 71/133 (54%), Gaps = 7/133 (5%) Query 3 TSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGAS-PATAARYQLSALGA 61 TS L RVT+ + D+ LP+ P+ L+P I+ +L DR AS P T QL Sbjct 2 TSRSELSRVTLVGERRRADIVLPSDTPIGQLLPDILQLLDDRAASRPLT---RQLITSDG 58 Query 62 PALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTA---RPQCQRTT 118 ALP+ +TLA G+ DGAVL L ++ A PP P DV + VA LD A RP +R + Sbjct 59 SALPHDSTLASAGVSDGAVLRLVRTHAAPPAPVVHDVTDQVADHLDLQAWRWRPAARRVS 118 Query 119 RLSGALAASCITA 131 + +A S I A Sbjct 119 AGASTVAFSVIAA 131 >gi|294812763|ref|ZP_06771406.1| putative integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|326441286|ref|ZP_08216020.1| hypothetical protein SclaA2_09471 [Streptomyces clavuligerus ATCC 27064] gi|294325362|gb|EFG07005.1| putative integral membrane protein [Streptomyces clavuligerus ATCC 27064] Length=460 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/121 (41%), Positives = 65/121 (54%), Gaps = 7/121 (5%) Query 2 PTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGAS-PATAARYQLSALG 60 PTS L RVT+ + D+ LPA P+ L+P I+ +L DR A P T QL+ Sbjct 6 PTSRTQLSRVTLVGERRRADIVLPADTPIGRLLPDILQLLDDRAADRPLT---RQLTTSD 62 Query 61 APALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTA---RPQCQRT 117 LP+ +TLA G+ DGAVL L ++ A PP P DV + VA LD A RP +R Sbjct 63 GSVLPHDSTLASAGVADGAVLRLVRTHAAPPAPVVHDVTDLVADDLDLRAWRWRPAARRV 122 Query 118 T 118 + Sbjct 123 S 123 >gi|344999823|ref|YP_004802677.1| secretion protein snm4 [Streptomyces sp. SirexAA-E] gi|344315449|gb|AEN10137.1| secretion protein snm4 [Streptomyces sp. SirexAA-E] Length=446 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/106 (45%), Positives = 63/106 (60%), Gaps = 4/106 (3%) Query 3 TSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGAS-PATAARYQLSALGA 61 TS L RVT+ + D+ LP+ P+ L+P I+ +L DR AS P T R L++ G+ Sbjct 2 TSRAELSRVTLVGERRRADIVLPSDTPIGQLLPDILQLLDDRVASRPLT--RQLLTSDGS 59 Query 62 PALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALD 107 ALP+ +TLA GI DGAVL L +S + PP P DV + VA LD Sbjct 60 -ALPHDSTLASSGISDGAVLRLVRSHSAPPAPVVHDVTDQVADDLD 104 >gi|291298206|ref|YP_003509484.1| secretion protein snm4 [Stackebrandtia nassauensis DSM 44728] gi|290567426|gb|ADD40391.1| secretion protein snm4 [Stackebrandtia nassauensis DSM 44728] Length=465 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 132/506 (27%), Positives = 197/506 (39%), Gaps = 88/506 (17%) Query 2 PTSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASP---------ATAA 52 P + GL RVTV A +D+ LP VP+A + D+L ASP Sbjct 3 PITATGLCRVTVVAPHTRMDVALPVHVPIAEIQ---ADLLLQAAASPNGEFFVNDGVKGG 59 Query 53 RYQLSALGAPALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARP 112 + L+ LG P L + AQ + DG L ++ P DDV +A+A A A Sbjct 60 GWTLARLGEPPLNPDLSPAQLKLTDGEELYFRLAADTAPATVFDDVIDAIATAASHRAGK 119 Query 113 QCQRTTRLSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIAC 172 T+R G + + AGG L T T +V +AG+ AL+ Sbjct 120 WQPSTSRKVGLVTGTLALAGG--------LVTAATMAGGLAGSIVLSAGVVALVACWALA 171 Query 173 RTYRDPIAGLTLSVIATIFGAVAG-LLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGG 231 R + A + L +I G G +L +P A ++ G Sbjct 172 RAFEQHHAAVLLGLIGVGCGLFGGAILLIP---------------------AAEMSDLGA 210 Query 232 ITLTAVACCAVVVAAATLVGAITAAP------VPAIGSLATLASFGLLEV---------- 275 + L A C VV +A + A +AP V G + A LEV Sbjct 211 VHLLAGGCVGVVYSALAGLAAERSAPLFHSAAVACTGLILGTALRTWLEVPTQAAAATVA 270 Query 276 -------------SARMAVLLAGLSPRLPPALNPDDADALPTTDRL--TTRANRADAWLT 320 S R+A L PR P L D L T D R+ RAD +L+ Sbjct 271 VLALAAIPMLPMLSYRLAQLPMPDIPRTPQQLRAD----LETLDGELALKRSARADDYLS 326 Query 321 SLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGALLLLRARSADT-RRSLVFAI 379 LL A A IG ++ G ++ L A+ ++LL+AR T R+ L + Sbjct 327 GLLGACAL-----MIGVSLPWLG-AAETVSAFILCALLAFVVLLKARDFSTLRQRLPLIV 380 Query 380 CGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMF---LGFVAPALSLSPVTYRTIEL 436 G+ V +A LE G + + L A A F V +SPV RT ++ Sbjct 381 AGLVGVG-CLALAGGLWLEDGWRLGIVGGGLIAFAAFTILFSLVVAGKRISPVWGRTGDI 439 Query 437 LECLALIAMVPLTAWLCGAYSAVRHL 462 ++ + +A++P+T W+ AY +R++ Sbjct 440 VQIILTLAVLPITLWVWDAYWWIRNI 465 >gi|108798097|ref|YP_638294.1| hypothetical protein Mmcs_1125 [Mycobacterium sp. MCS] gi|108768516|gb|ABG07238.1| conserved hypothetical protein [Mycobacterium sp. MCS] Length=443 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 140/442 (32%), Positives = 196/442 (45%), Gaps = 49/442 (11%) Query 7 GLRRVTVHAG-AQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALGAPALP 65 L V+VHA AVDL LPA +PVA+LIP IV + GA T AR++L+ L L Sbjct 14 NLCHVSVHADDVGAVDLALPARLPVASLIPDIVRL---AGADTGTPARWELATLCGTVLD 70 Query 66 NATTLAQCGIRDGAVLVLHKSSAQPPTPRCD--DVAEAVAAALDTTARPQCQ-RTTRLSG 122 A L +RDG VL+L S A PR D DV AV A +A PQ R R+ Sbjct 71 EAVPLQDQDVRDGDVLLL--SPALSRVPRFDRPDVVTAVLA----SAPPQGDTRALRVIV 124 Query 123 ALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIAGL 182 + A+ A GL R+A + + G A A V P+ L Sbjct 125 GVIAAAAGALAGLAGQRSASLITLGMLACLVGGTAVAMSRAGRGMWVCG------PLGWL 178 Query 183 TLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACCAV 242 T+ + + G LAVPG V L+ AAA+ S++ +R+ G ++ A CA Sbjct 179 TV-----LLAGLCGALAVPGALDVPHALLGVAAAASVSLVLLRLR-VGSPVVSTAAACAG 232 Query 243 VVAAATLVGAITAAPVPAIGSLATLASFGLLEVSA-RMAVLLAGL--SPRLPPALNPDDA 299 ++ AA + GA+ P +A A R++VLL+GL +P L L PD A Sbjct 233 LLCAAVMSGAVVWQVSPHSAGVALALLALGALSLAPRLSVLLSGLAPAPSLTDELLPDAA 292 Query 300 DALPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTG 359 RL L L+ A+A IG A+ R + G A V G Sbjct 293 HRAAAGHRL----------LVGLVIGICAAACIGTAVVAIGGLSGARHWLSGTAFCVVAG 342 Query 360 ALLLLRAR---SADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMF 416 A +LLR+R + R +L + G ++ AF VAA R +GPW AA+ + Sbjct 343 AAMLLRSRCYAAGACRWALTLS--GSCSLTAAFVVAAMR---YGPWAAAVAVCAGVTVIV 397 Query 417 LGFVAPALSLSPVTYRTIELLE 438 +P SP+ R++E+LE Sbjct 398 --RESPG-KPSPLAARSVEVLE 416 >gi|119867193|ref|YP_937145.1| hypothetical protein Mkms_1142 [Mycobacterium sp. KMS] gi|119693282|gb|ABL90355.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=437 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 136/440 (31%), Positives = 195/440 (45%), Gaps = 45/440 (10%) Query 7 GLRRVTVHAG-AQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALGAPALP 65 L V+VHA AVDL LPA +PVA+LIP IV + GA T AR++L+ L L Sbjct 8 NLCHVSVHADDVGAVDLALPARLPVASLIPDIVRL---AGADTGTPARWELATLCGTVLD 64 Query 66 NATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQ-RTTRLSGAL 124 A L +RDG VL+L + ++ P DV AV A +A PQ R R+ + Sbjct 65 EAVPLQDQDVRDGDVLLLSPALSRVPRFDRPDVVTAVLA----SAPPQGDTRALRVIVGV 120 Query 125 AASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTYRDPIAGLTL 184 A+ A GL R+A + + G A A V P+ LT+ Sbjct 121 IAAAAGALAGLAGQRSASLITLGMLACLVGGTAVAMSRAGRGMWVCG------PLGWLTV 174 Query 185 SVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGGITLTAVACCAVVV 244 + + G LAVPG V L+ AAA+ S++ +R+ G ++ A CA ++ Sbjct 175 -----LLAGLCGALAVPGALDVPHALLGVAAAASVSLVLLRLR-VGSPVVSTAAACAGLL 228 Query 245 AAATLVGAITAAPVPAIGSLATLASFGLLEVSA-RMAVLLAGL--SPRLPPALNPDDADA 301 AA + GA+ P +A A R++VLL+GL +P L L PD A Sbjct 229 CAAVMSGAVVWQVSPHSAGVALALLALGALSLAPRLSVLLSGLAPAPSLTDELLPDAAHR 288 Query 302 LPTTDRLTTRANRADAWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGAL 361 RL L L+ A+A IG A+ R + G A V GA Sbjct 289 AAAGHRL----------LVGLVIGICAAACIGTAVVAIGGLSGARHWLSGTAFCVVAGAA 338 Query 362 LLLRAR---SADTRRSLVFAICGITTVATAFTVAADRALEHGPWIAALTAMLAAVAMFLG 418 +LLR+R + R +L + G ++ AF VAA R +GPW AA+ + Sbjct 339 MLLRSRCYAAGACRWALTLS--GSCSLTAAFVVAAMR---YGPWAAAVAVCAGVTVIV-- 391 Query 419 FVAPALSLSPVTYRTIELLE 438 +P SP+ R++E+LE Sbjct 392 RESPG-KPSPLAARSVEVLE 410 >gi|302544287|ref|ZP_07296629.1| secretion protein Snm4 [Streptomyces hygroscopicus ATCC 53653] gi|302461905|gb|EFL24998.1| secretion protein Snm4 [Streptomyces himastatinicus ATCC 53653] Length=451 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/120 (39%), Positives = 64/120 (54%), Gaps = 7/120 (5%) Query 3 TSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGAS-PATAARYQLSALGA 61 TS L RVT+ + D+ LP+ P+ L+P I+ +L DR AS P T QL Sbjct 7 TSRAQLSRVTLVGERRRADIVLPSDTPIGQLLPDILQLLDDRAASRPMT---RQLITSDG 63 Query 62 PALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTA---RPQCQRTT 118 ALP+ +TL+ + DGAVL L ++ + PP P DV + VA LD A RP +R + Sbjct 64 SALPHDSTLSSAEVADGAVLRLVRAHSAPPAPVVHDVTDLVADDLDLQAWRWRPATRRIS 123 >gi|118473897|ref|YP_884486.1| transmembrane protein [Mycobacterium smegmatis str. MC2 155] gi|118175184|gb|ABK76080.1| probable conserved transmembrane protein [Mycobacterium smegmatis str. MC2 155] Length=510 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 131/510 (26%), Positives = 196/510 (39%), Gaps = 69/510 (13%) Query 6 PGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDR----------GASPATAARYQ 55 P RVT+ G + DL LPA P+ T I V L + G + + Sbjct 18 PSTTRVTILTGKRMTDLVLPATAPIETYIDETVSFLAELLEDAPKDVLAGFNFGEQGVWA 77 Query 56 LSALGAPALPNATTLAQCGIRDGAVLVL-HKSSAQPPTPRCDDVAEAVAAALDTT---AR 111 + GAP L +L G+ DG++L L S + P +DV +A+A LD + R Sbjct 78 FARPGAPPLKADESLDDAGVVDGSLLTLVSVSRTERYRPLVEDVIDAIAV-LDESPVFDR 136 Query 112 PQCQRTTRLSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIA 171 + ++ + A+ IT + R+ G + +AA Sbjct 137 TALKHFVAIALPIVATIITVATLIAWTRSGHGWWWAVALGVLGLGLLGGSMAA------K 190 Query 172 CRTYRDPIAGLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGG 231 R ++ L GL AVP GV + +A AA VL + + GG Sbjct 191 SRYNSLDMSESLLLAATPALAGAVGL-AVPLPRGVDGLGAPQLAGAAAVVLLLTLATRGG 249 Query 232 -------ITLTAVACCAVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVS--ARMAVL 282 + AV AV AAA G VPA G++A FGL+ V+ A++ V Sbjct 250 PRKRAEVASFVAVTSIAVT-AAAIAFGYGWQEWVPA-GAIA----FGLIVVTNAAKLTVA 303 Query 283 LAGLS-PRLP-------------PALNPDD-ADALPTTD-----------RLTTRANRAD 316 +A ++ P +P P + PD DA PT RL R+ Sbjct 304 VARIALPPIPAPGEHVSNDELLDPVVTPDSIDDASPTWQAIIASVPESAARLQERSQLTR 363 Query 317 AWLTSLLAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGALLLLRARSADTRRSLV 376 L L+A A T+GAI V H S + + + G R+R R Sbjct 364 QLLIGFLSAGALILTVGAIAVVVQGHFFVHSMIVASLVTVICG----FRSRLYAERWCAW 419 Query 377 FAICGITTVATAFTVAADRALEHGPWIA-ALTAMLAAVAMFL-GFVAPALSLSPVTYRTI 434 + V T + WI + MLA +A+ + G +SPVT R + Sbjct 420 ALLAATVAVPTGLMIKLSMWWPDSAWIVMGIYTMLALIALIVVGATDGVRRVSPVTKRIL 479 Query 435 ELLECLALIAMVPLTAWLCGAYSAVRHLDL 464 EL + A+ A++PL W+ G Y +R+L L Sbjct 480 ELFDGAAIAAVIPLLLWIAGVYDLLRNLRL 509 >gi|296138595|ref|YP_003645838.1| secretion protein snm4 [Tsukamurella paurometabola DSM 20162] gi|296026729|gb|ADG77499.1| secretion protein snm4 [Tsukamurella paurometabola DSM 20162] Length=497 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 85/245 (35%), Positives = 120/245 (49%), Gaps = 17/245 (6%) Query 8 LRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDR--GASPATAAR-YQLSALGAPAL 64 L RV+V G VD++LP P LIP +V + GDR G + + AR ++L+ +G L Sbjct 15 LSRVSVLCGGAQVDVSLPLQTPTEVLIPELVRLFGDRISGTAESAWARPWRLAPVGGDPL 74 Query 65 PNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTRLSGAL 124 P T + GI +G +LVL + A PP DDV + A LDT R ++ + G + Sbjct 75 PGPQTPSDAGITEGDLLVLFVAEAPPPPAVFDDVFDTAATDLDTGLR-WNEKAAMIVGLM 133 Query 125 AASCITAGGGLMLVRNALGTNVTRYSDATAGVVAA----AGLAALLF--AVIACRTYRD- 177 + T + +R L + G + A AG A LL A A R R+ Sbjct 134 VLAGATLATAAVALRLGLAPRGESGARPAVGAIFAQLWTAGGALLLLVGAGTAVRRMRES 193 Query 178 -PIAGLTLSVIATIFGAVAGLLAVP----GVPGVHSVLVAAMAAAATSVLAMRITGCGGI 232 P+ L+ AT+ A AG LAVP G G L+A +AAA T+V+A+RITG G + Sbjct 194 GPVP-TALAACATVLSAAAGALAVPLGMDGRYGPPHALLAVVAAAVTAVVALRITGRGAV 252 Query 233 TLTAV 237 AV Sbjct 253 VHIAV 257 >gi|315441757|ref|YP_004074636.1| secretion protein snm4 [Mycobacterium sp. Spyr1] gi|315260060|gb|ADT96801.1| secretion protein snm4 [Mycobacterium sp. Spyr1] Length=486 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 133/506 (27%), Positives = 207/506 (41%), Gaps = 76/506 (15%) Query 11 VTVHAGAQAVDLTLPAAVPVATLIPSIVDILGD--RGASPATAARYQLSALG-------- 60 +T+ G + DL LP+A P+ T + V +LGD P A + +A G Sbjct 1 MTILTGRRMTDLVLPSAAPIETYVDETVAVLGDILSDTPPDVLAGFDFTAQGVWSFARPG 60 Query 61 APALPNATTLAQCGIRDGAVL-VLHKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRTTR 119 AP + +L G+ DG++L V+ S + P +DV +A+A LD T + R Sbjct 61 APPIKLTDSLDDAGVVDGSLLTVVSVSRTERYRPLVEDVIDAIAV-LDETPEFDRRALYR 119 Query 120 LSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTY--RD 177 G L + L V L + T A + G L + ++ R Y D Sbjct 120 FVG-LVLPLVAL---LTTVMAVLSWSSTGRDWWWAAALGVLGTGLLGGSALSQRRYGNLD 175 Query 178 PIAGLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGG------ 231 L +S + + GAV +LAVP GV S+ +A + +L M + GG Sbjct 176 MAESLLVSALVMLTGAV--VLAVPLPDGVESLGAPQVAGSGALILLMVLATRGGPHRRAE 233 Query 232 ITLTAVACCAVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVS--ARMAVLLAGLSPR 289 + + AA G A VPA G++A FGL+ V+ A+M V +A ++ Sbjct 234 VAAFLAVVALALTFAAVAYGYGWNAWVPA-GAIA----FGLIVVTNAAKMTVAVARIA-- 286 Query 290 LPPALNPDDA-------DALPTTD--------------------RLTTRANRADAWLTSL 322 LPP P ++ D + TTD RLT R+ A L Sbjct 287 LPPIPAPGESVTNDELLDPVATTDASEESETWQAIIASVPDSAARLTERSRLAKRLLIGF 346 Query 323 LAAFAASATIGAIGTAVATHGIHRSSMGGIALAAVTGALLLLRARSADTRRSLVFAICGI 382 L+A A +G++ V H S + +A + L R+R R + Sbjct 347 LSAGALILVLGSVFVVVQGHFFVHSMI----VAGLVTMLAGFRSRLYVERWCAWALMAAA 402 Query 383 TTVATAFTVAA-----DRALEHGPWIAALTAMLAAVAMF-LGFVAPALSLSPVTYRTIEL 436 + + V DRA W+ + + AAVA+ +G +SPVT R +EL Sbjct 403 VAIPSGIAVRMSLWYPDRAW----WVLGIYTVAAAVALIVMGATDGVRRISPVTKRILEL 458 Query 437 LECLALIAMVPLTAWLCGAYSAVRHL 462 L+ + A++PL W+ G Y +R+L Sbjct 459 LDGATIAAVIPLLLWISGVYDVLRNL 484 >gi|329934553|ref|ZP_08284594.1| integral membrane protein [Streptomyces griseoaurantiacus M045] gi|329305375|gb|EGG49231.1| integral membrane protein [Streptomyces griseoaurantiacus M045] Length=451 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/133 (39%), Positives = 70/133 (53%), Gaps = 7/133 (5%) Query 3 TSDPGLRRVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGAS-PATAARYQLSALGA 61 TS L RVT+ + D+ LP+ P+ L+P I+ +L DR AS P T QL Sbjct 7 TSRAQLSRVTLVGERRRADIVLPSDTPIGQLLPDILQLLDDRAASRPMT---RQLITSDG 63 Query 62 PALPNATTLAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALDTTA---RPQCQRTT 118 LP+ TL+ G+ DGAVL L ++ A PP P DV + VA LD A RP +R T Sbjct 64 SVLPHDATLSSEGVPDGAVLQLVRAHAAPPAPVVHDVTDQVADDLDLRAWRWRPAARRAT 123 Query 119 RLSGALAASCITA 131 + +A + +TA Sbjct 124 AGTATVAFAVVTA 136 >gi|297563535|ref|YP_003682509.1| secretion protein snm4 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847983|gb|ADH70003.1| secretion protein snm4 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=441 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/98 (43%), Positives = 59/98 (61%), Gaps = 2/98 (2%) Query 10 RVTVHAGAQAVDLTLPAAVPVATLIPSIVDILGDRGASPATAARYQLSALGAPALPNATT 69 RVT+ + VD LPA+ PV L+P ++D+LGD+ +PA R+ ++A G L TT Sbjct 6 RVTLVGEERRVDAVLPASEPVGALMPEVLDLLGDQVENPAK-LRHLVTASGI-VLEGDTT 63 Query 70 LAQCGIRDGAVLVLHKSSAQPPTPRCDDVAEAVAAALD 107 LA+ I DGAVL L ++ P P +V EAV+ ALD Sbjct 64 LAERQITDGAVLRLVRAEEPVPAPVVHEVPEAVSMALD 101 >gi|289441319|ref|ZP_06431063.1| conserved membrane protein [Mycobacterium tuberculosis T46] gi|289414238|gb|EFD11478.1| conserved membrane protein [Mycobacterium tuberculosis T46] Length=511 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 139/508 (28%), Positives = 213/508 (42%), Gaps = 79/508 (15%) Query 11 VTVHAGAQAVDLTLPAAVPVATLIPSIV------------DILGDRGASPATAARYQLSA 58 VT+ G + DL LPAAVP+ T I V D+LG G + + Sbjct 25 VTILTGRRMTDLVLPAAVPMETYIDDTVAVLSEVLEDTPADVLG--GFDFTAQGVWAFAR 82 Query 59 LGAPALPNATTLAQCGIRDGAVLVL-HKSSAQPPTPRCDDVAEAVAAALDTTARPQCQRT 117 G+P L +L G+ DG++L L S + P +DV +A+A LD + P+ RT Sbjct 83 PGSPPLKLDQSLDDAGVVDGSLLTLVSVSRTERYRPLVEDVIDAIAV-LDES--PEFDRT 139 Query 118 --TRLSGALAASCITAGGGLMLVRNALGTNVTRYSDATAGVVAAAGLAALLFAVIACRTY 175 R GA A +TA M +R T + + G++ G+A L+ + +A R Y Sbjct 140 ALNRFVGA-AIPLLTAPVIGMAMRAWWETGRSLWWPLAIGIL---GIAVLVGSFVANRFY 195 Query 176 RDPIAGLTLSVIATIFGAVAGLLAVPGVPGVHSVLVAAMAAAATSVLAMRITGCGG---- 231 + L V + A A LAVP GV+S+ +A AAT+VL + + GG Sbjct 196 QSGHLAEYLLVTTYLLIATAAALAVPLPRGVNSLGAPQVAGAATAVLFLTLMTRGGPRKR 255 Query 232 --ITLTAVACCAVVVAAATLVGAITAAPVPAIGSLATLASFGLLEVS--ARMAVLLAGLS 287 + AV V+AAA G VPA G +FGL V+ A++ V +A ++ Sbjct 256 HELASFAVITAIAVIAAAAAFGYGYQDWVPAGG-----IAFGLFIVTNAAKLTVSVARIA 310 Query 288 -PRLP-PALNPDDADAL-------------PTTD-----------RLTTRANRADAWLTS 321 P +P P D+ + L PT RLT R+ A Sbjct 311 LPPIPVPGETVDNEELLDPVATPEATSEETPTWQAIIASVPASAVRLTERSKLAK----Q 366 Query 322 LLAAFAASATI----GAIGTAVATHG-IHRSSMGGIALAAVTGALLLLRARSADTRRSLV 376 LL + S T+ GAI V H +H + G+ + V G R+R R Sbjct 367 LLIGYVTSGTLILAAGAIAVVVRGHFFVHSLVVAGL-ITTVCG----FRSRLYAERWCAW 421 Query 377 FAICGITTVATAFTVAADRALEHGPWI--AALTAMLAAVAMFLGFVAPALSLSPVTYRTI 434 + + T T H W+ + + + +G +A +SPV RT+ Sbjct 422 ALLAATVAIPTGLTAKLIIWYPHYAWLLLSVYLTVALVALVVVGSMAHVRRVSPVVKRTL 481 Query 435 ELLECLALIAMVPLTAWLCGAYSAVRHL 462 EL++ + A++P+ W+ G Y VR++ Sbjct 482 ELIDGAMIAAIIPMLLWITGVYDTVRNI 509 Lambda K H 0.323 0.132 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 985619960136 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40