BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3457c
Length=347
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610593|ref|NP_217974.1| DNA-directed RNA polymerase subunit... 698 0.0
gi|289576193|ref|ZP_06456420.1| DNA-directed RNA polymerase subu... 696 0.0
gi|289555728|ref|ZP_06444938.1| DNA-directed RNA polymerase subu... 695 0.0
gi|240167783|ref|ZP_04746442.1| DNA-directed RNA polymerase subu... 683 0.0
gi|118616625|ref|YP_904957.1| DNA-directed RNA polymerase subuni... 682 0.0
gi|41410331|ref|NP_963167.1| DNA-directed RNA polymerase subunit... 681 0.0
gi|254776830|ref|ZP_05218346.1| DNA-directed RNA polymerase subu... 679 0.0
gi|254819221|ref|ZP_05224222.1| DNA-directed RNA polymerase subu... 678 0.0
gi|326905303|gb|EGE52236.1| DNA-directed RNA polymerase subunit ... 677 0.0
gi|342861869|ref|ZP_08718514.1| DNA-directed RNA polymerase subu... 676 0.0
gi|296168685|ref|ZP_06850434.1| DNA-directed RNA polymerase subu... 676 0.0
gi|15828059|ref|NP_302322.1| DNA-directed RNA polymerase subunit... 673 0.0
gi|254366058|ref|ZP_04982103.1| DNA-directed RNA polymerase (alp... 665 0.0
gi|333991920|ref|YP_004524534.1| DNA-directed RNA polymerase sub... 665 0.0
gi|108798085|ref|YP_638282.1| DNA-directed RNA polymerase subuni... 661 0.0
gi|120402447|ref|YP_952276.1| DNA-directed RNA polymerase subuni... 660 0.0
gi|169630849|ref|YP_001704498.1| DNA-directed RNA polymerase sub... 658 0.0
gi|145225546|ref|YP_001136224.1| DNA-directed RNA polymerase sub... 657 0.0
gi|118469556|ref|YP_885906.1| DNA-directed RNA polymerase subuni... 642 0.0
gi|54022804|ref|YP_117046.1| DNA-directed RNA polymerase subunit... 637 1e-180
gi|262203540|ref|YP_003274748.1| DNA-directed RNA polymerase sub... 634 5e-180
gi|343927694|ref|ZP_08767162.1| DNA-directed RNA polymerase subu... 631 5e-179
gi|296141062|ref|YP_003648305.1| DNA-directed RNA polymerase sub... 629 2e-178
gi|312140889|ref|YP_004008225.1| DNA-directed RNA polymerase alp... 628 5e-178
gi|111023125|ref|YP_706097.1| DNA-directed RNA polymerase subuni... 628 5e-178
gi|226305370|ref|YP_002765328.1| DNA-directed RNA polymerase alp... 627 7e-178
gi|326383232|ref|ZP_08204920.1| DNA-directed RNA polymerase subu... 626 2e-177
gi|333918174|ref|YP_004491755.1| DNA-directed RNA polymerase sub... 612 3e-173
gi|319948695|ref|ZP_08022816.1| DNA-directed RNA polymerase subu... 596 2e-168
gi|324999252|ref|ZP_08120364.1| DNA-directed RNA polymerase subu... 586 1e-165
gi|256380567|ref|YP_003104227.1| DNA-directed RNA polymerase sub... 586 2e-165
gi|331699145|ref|YP_004335384.1| DNA-directed RNA polymerase sub... 585 4e-165
gi|134103231|ref|YP_001108892.1| DNA-directed RNA polymerase sub... 582 3e-164
gi|257054498|ref|YP_003132330.1| DNA-directed RNA polymerase sub... 580 1e-163
gi|300782639|ref|YP_003762930.1| DNA-directed RNA polymerase sub... 575 3e-162
gi|302524022|ref|ZP_07276364.1| DNA-directed RNA polymerase, alp... 570 9e-161
gi|258651412|ref|YP_003200568.1| DNA-directed RNA polymerase sub... 559 3e-157
gi|284992846|ref|YP_003411400.1| DNA-directed RNA polymerase sub... 551 8e-155
gi|334336213|ref|YP_004541365.1| DNA-directed RNA polymerase sub... 543 2e-152
gi|269955462|ref|YP_003325251.1| DNA-directed RNA polymerase sub... 539 3e-151
gi|296394890|ref|YP_003659774.1| DNA-directed RNA polymerase sub... 536 2e-150
gi|317505829|ref|ZP_07963674.1| DNA-directed RNA polymerase [Seg... 535 6e-150
gi|336116819|ref|YP_004571586.1| DNA-directed RNA polymerase sub... 534 7e-150
gi|336319962|ref|YP_004599930.1| DNA-directed RNA polymerase sub... 534 8e-150
gi|332669545|ref|YP_004452553.1| DNA-directed RNA polymerase sub... 532 3e-149
gi|317125840|ref|YP_004099952.1| DNA-directed RNA polymerase sub... 532 4e-149
gi|312199992|ref|YP_004020053.1| DNA-directed RNA polymerase, su... 530 1e-148
gi|172040041|ref|YP_001799755.1| DNA-directed RNA polymerase sub... 530 2e-148
gi|269796227|ref|YP_003315682.1| DNA-directed RNA polymerase sub... 529 2e-148
gi|284033971|ref|YP_003383902.1| DNA-directed RNA polymerase sub... 528 4e-148
>gi|15610593|ref|NP_217974.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium tuberculosis
H37Rv]
gi|15843052|ref|NP_338089.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium tuberculosis
CDC1551]
gi|31794633|ref|NP_857126.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium bovis
AF2122/97]
68 more sequence titles
Length=347
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/347 (100%), Positives = 347/347 (100%), Gaps = 0/347 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK
Sbjct 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL
Sbjct 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
>gi|289576193|ref|ZP_06456420.1| DNA-directed RNA polymerase subunit alpha rpoA [Mycobacterium
tuberculosis K85]
gi|289540624|gb|EFD45202.1| DNA-directed RNA polymerase subunit alpha rpoA [Mycobacterium
tuberculosis K85]
Length=347
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/347 (99%), Positives = 346/347 (99%), Gaps = 0/347 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPIDDLDLTVRSYNCLKREGVH VGELVARTESDLLDIRNFGQKSIDEVKIK
Sbjct 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHIVGELVARTESDLLDIRNFGQKSIDEVKIK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL
Sbjct 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
>gi|289555728|ref|ZP_06444938.1| DNA-directed RNA polymerase subunit alpha rpoA [Mycobacterium
tuberculosis KZN 605]
gi|289440360|gb|EFD22853.1| DNA-directed RNA polymerase subunit alpha rpoA [Mycobacterium
tuberculosis KZN 605]
Length=346
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/346 (99%), Positives = 346/346 (100%), Gaps = 0/346 (0%)
Query 2 LISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLH 61
+ISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLH
Sbjct 1 MISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLH 60
Query 62 EFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNP 121
EFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNP
Sbjct 61 EFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNP 120
Query 122 GMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDAT 181
GMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDAT
Sbjct 121 GMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDAT 180
Query 182 RVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEA 241
RVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEA
Sbjct 181 RVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEA 240
Query 242 DHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKL 301
DHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKL
Sbjct 241 DHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKL 300
Query 302 HQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
HQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL
Sbjct 301 HQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 346
>gi|240167783|ref|ZP_04746442.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium kansasii
ATCC 12478]
Length=347
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/347 (97%), Positives = 346/347 (99%), Gaps = 0/347 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+VLTDNRSQF IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEEVLTDNRSQFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
LHQLGLSLKDSPP+FDPSEVAGYDVATGTWSTEG+YD+QDYAETEQL
Sbjct 301 LHQLGLSLKDSPPTFDPSEVAGYDVATGTWSTEGSYDDQDYAETEQL 347
>gi|118616625|ref|YP_904957.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium ulcerans
Agy99]
gi|183981110|ref|YP_001849401.1| DNA-directed RNA polymerase (alpha chain), RpoA [Mycobacterium
marinum M]
gi|158512379|sp|A0PMB7.1|RPOA_MYCUA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit alpha;
AltName: Full=Transcriptase subunit alpha
gi|118568735|gb|ABL03486.1| DNA-directed RNA polymerase (alpha chain), RpoA [Mycobacterium
ulcerans Agy99]
gi|183174436|gb|ACC39546.1| DNA-directed RNA polymerase (alpha chain), RpoA [Mycobacterium
marinum M]
Length=347
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/347 (98%), Positives = 345/347 (99%), Gaps = 0/347 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+VLTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P M IATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETKNSI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD+QDYAETEQL
Sbjct 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
>gi|41410331|ref|NP_963167.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|118463576|ref|YP_883533.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium avium
104]
gi|61215987|sp|Q73S43.1|RPOA_MYCPA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit alpha;
AltName: Full=Transcriptase subunit alpha
gi|158512444|sp|A0QKU5.1|RPOA_MYCA1 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit alpha;
AltName: Full=Transcriptase subunit alpha
gi|41399165|gb|AAS06783.1| RpoA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118164863|gb|ABK65760.1| DNA-directed RNA polymerase, alpha subunit [Mycobacterium avium
104]
gi|336460704|gb|EGO39594.1| DNA-directed RNA polymerase, alpha subunit [Mycobacterium avium
subsp. paratuberculosis S397]
Length=347
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/347 (97%), Positives = 344/347 (99%), Gaps = 0/347 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+VLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEEVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT IILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTAIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct 121 PELHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
LHQLGLSLKDSPPSFDPS+VAGYDVATGTWSTE AYD+QDYAETEQL
Sbjct 301 LHQLGLSLKDSPPSFDPSQVAGYDVATGTWSTEAAYDDQDYAETEQL 347
>gi|254776830|ref|ZP_05218346.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium avium
subsp. avium ATCC 25291]
Length=347
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/347 (97%), Positives = 343/347 (99%), Gaps = 0/347 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+VLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEEVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT IILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTAIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct 121 PELHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSP E
Sbjct 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPPE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
LHQLGLSLKDSPPSFDPS+VAGYDVATGTWSTE AYD+QDYAETEQL
Sbjct 301 LHQLGLSLKDSPPSFDPSQVAGYDVATGTWSTEAAYDDQDYAETEQL 347
>gi|254819221|ref|ZP_05224222.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium intracellulare
ATCC 13950]
Length=347
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/347 (97%), Positives = 343/347 (99%), Gaps = 0/347 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+VLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEEVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT IILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTAIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct 121 PDLHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVETKSSINPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
LHQLGLSLKDSP SFDPS+VAGYDVATGTWSTE AYD+QDYAETEQL
Sbjct 301 LHQLGLSLKDSPASFDPSQVAGYDVATGTWSTEAAYDDQDYAETEQL 347
>gi|326905303|gb|EGE52236.1| DNA-directed RNA polymerase subunit alpha rpoA [Mycobacterium
tuberculosis W-148]
Length=348
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/348 (98%), Positives = 342/348 (99%), Gaps = 1/348 (0%)
Query 1 MLISQRPTLSEDVLT-DNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGV 59
MLISQRPTL + +NRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGV
Sbjct 1 MLISQRPTLFGRTSSPNNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGV 60
Query 60 LHEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVH 119
LHEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVH
Sbjct 61 LHEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVH 120
Query 120 NPGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVD 179
NPGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVD
Sbjct 121 NPGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVD 180
Query 180 ATRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPA 239
ATRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPA
Sbjct 181 ATRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPA 240
Query 240 EADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKI 299
EADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKI
Sbjct 241 EADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKI 300
Query 300 KLHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
KLHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL
Sbjct 301 KLHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 348
>gi|342861869|ref|ZP_08718514.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium colombiense
CECT 3035]
gi|342130686|gb|EGT83990.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium colombiense
CECT 3035]
Length=347
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/347 (96%), Positives = 344/347 (99%), Gaps = 0/347 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+VLTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT IILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTAIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct 121 PDLHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVETKSSINPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
LHQLGLSLKDSPPSFDPS+VAGYDVATGTWS+E +YD+QDYAETEQL
Sbjct 301 LHQLGLSLKDSPPSFDPSQVAGYDVATGTWSSEASYDDQDYAETEQL 347
>gi|296168685|ref|ZP_06850434.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896594|gb|EFG76235.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=347
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/347 (97%), Positives = 341/347 (99%), Gaps = 0/347 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+VLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEEVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTV GVKEDVT IILNLK LVVSSEEDEPVTMYLRKQGPG VTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVAGVKEDVTAIILNLKGLVVSSEEDEPVTMYLRKQGPGAVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P MHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct 121 PEMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
LHQLGLSLKDSPPSFDPS+VAGYDVATGTWSTE AYD+QDYAETEQL
Sbjct 301 LHQLGLSLKDSPPSFDPSQVAGYDVATGTWSTEAAYDDQDYAETEQL 347
>gi|15828059|ref|NP_302322.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium leprae
TN]
gi|221230536|ref|YP_002503952.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium leprae
Br4923]
gi|7388099|sp|Q9X798.1|RPOA_MYCLE RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit alpha;
AltName: Full=Transcriptase subunit alpha
gi|4539112|emb|CAB39833.1| putative DNA-directed RNA polymerase alpha chain [Mycobacterium
leprae]
gi|13093612|emb|CAC30912.1| [alpha] subunit of RNA polymerase [Mycobacterium leprae]
gi|219933643|emb|CAR72054.1| [alpha] subunit of RNA polymerase [Mycobacterium leprae Br4923]
Length=347
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/347 (96%), Positives = 340/347 (98%), Gaps = 0/347 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSED+LTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVTEIILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN
Sbjct 61 HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
PGM IATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETK+SI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
LHQLGLSLKDSP SFDPSEVAGYDV TGTWST+GAYD QDYAETEQL
Sbjct 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347
>gi|254366058|ref|ZP_04982103.1| DNA-directed RNA polymerase (alpha chain) rpoA [Mycobacterium
tuberculosis str. Haarlem]
gi|134151571|gb|EBA43616.1| DNA-directed RNA polymerase (alpha chain) rpoA [Mycobacterium
tuberculosis str. Haarlem]
Length=348
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/332 (99%), Positives = 331/332 (99%), Gaps = 0/332 (0%)
Query 16 DNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTE 75
+ RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTE
Sbjct 17 ETRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTE 76
Query 76 IILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNPGMHIATLNDKGKLE 135
IILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNPGMHIATLNDKGKLE
Sbjct 77 IILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNPGMHIATLNDKGKLE 136
Query 136 VELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILD 195
VELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILD
Sbjct 137 VELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILD 196
Query 196 VETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHIASFALPIDDLD 255
VETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHIASFALPIDDLD
Sbjct 197 VETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHIASFALPIDDLD 256
Query 256 LTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKLHQLGLSLKDSPPSF 315
LTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKLHQLGLSLKDSPPSF
Sbjct 257 LTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKLHQLGLSLKDSPPSF 316
Query 316 DPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
DPSEVAGYDVATGTWSTEGAYDEQDYAETEQL
Sbjct 317 DPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 348
>gi|333991920|ref|YP_004524534.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium sp.
JDM601]
gi|333487888|gb|AEF37280.1| DNA-directed RNA polymerase (alpha chain) RpoA [Mycobacterium
sp. JDM601]
Length=347
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/347 (94%), Positives = 337/347 (98%), Gaps = 0/347 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+V+ DNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEEVVADNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSS+EDEPVTMYLRKQGPG VTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKGLVVSSDEDEPVTMYLRKQGPGAVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P MHIATLNDKGKLEVEL+VERGRGYVPAVQN+ SGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDMHIATLNDKGKLEVELIVERGRGYVPAVQNKVSGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKL+LDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLVLDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
LHQLGLSLKDSP SFDPS+VAGYD ATGTWS + YDEQDYAETEQL
Sbjct 301 LHQLGLSLKDSPASFDPSQVAGYDAATGTWSADTGYDEQDYAETEQL 347
>gi|108798085|ref|YP_638282.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium sp.
MCS]
gi|119867181|ref|YP_937133.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium sp.
KMS]
gi|126433745|ref|YP_001069436.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium sp.
JLS]
6 more sequence titles
Length=350
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/350 (94%), Positives = 339/350 (97%), Gaps = 3/350 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+ + DNRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEETVADNRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P MHIATLNDKGKLEVELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PEMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETKNSI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK
Sbjct 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAY---DEQDYAETEQL 347
LHQLGLSLKDSP +FDPSEVAGYD ATGTW+++ Y D QDYAETEQL
Sbjct 301 LHQLGLSLKDSPATFDPSEVAGYDAATGTWNSDAGYDLEDNQDYAETEQL 350
>gi|120402447|ref|YP_952276.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium vanbaalenii
PYR-1]
gi|158513011|sp|A1T520.1|RPOA_MYCVP RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit alpha;
AltName: Full=Transcriptase subunit alpha
gi|119955265|gb|ABM12270.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium vanbaalenii
PYR-1]
Length=350
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/350 (94%), Positives = 337/350 (97%), Gaps = 3/350 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSEDVL +NRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEDVLAENRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P MHIATLNDKGKLEVELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETKNSI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
AD A FALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK
Sbjct 241 ADQAAHFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAY---DEQDYAETEQL 347
LHQLGLSLKDSP SFDPSEVAGYDVATGTW+++ Y D QDYAETEQL
Sbjct 301 LHQLGLSLKDSPASFDPSEVAGYDVATGTWNSDAGYDLEDNQDYAETEQL 350
>gi|169630849|ref|YP_001704498.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium abscessus
ATCC 19977]
gi|169242816|emb|CAM63844.1| DNA-directed RNA polymerase alpha chain RpoA [Mycobacterium abscessus]
Length=350
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/350 (94%), Positives = 339/350 (97%), Gaps = 3/350 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+ L +NRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEETLAENRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLKSLVVSSEEDEPVTMYLRKQGPG VTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKSLVVSSEEDEPVTMYLRKQGPGAVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P MHIATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTY V+A
Sbjct 121 PDMHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYNVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKL+LDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLVLDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPI+DLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK
Sbjct 241 ADHIASFALPIEDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD---EQDYAETEQL 347
LHQLGLSLKDSP SFDPSEVAGYDVATGTWS G+YD +QD+AETEQL
Sbjct 301 LHQLGLSLKDSPTSFDPSEVAGYDVATGTWSDTGSYDFDGDQDFAETEQL 350
>gi|145225546|ref|YP_001136224.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium gilvum
PYR-GCK]
gi|315445898|ref|YP_004078777.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium sp.
Spyr1]
gi|145218032|gb|ABP47436.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium gilvum
PYR-GCK]
gi|315264201|gb|ADU00943.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium sp.
Spyr1]
Length=354
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/354 (93%), Positives = 337/354 (96%), Gaps = 7/354 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+V+ +NRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEEVVAENRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P MHIATLNDKGKLEVELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELN+EAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNIEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
AD A FALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK
Sbjct 241 ADQAAHFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAY-------DEQDYAETEQL 347
LHQLGLSLKDSP SFDPSEVAGYDVATGTW+++ Y D QDYAETEQL
Sbjct 301 LHQLGLSLKDSPASFDPSEVAGYDVATGTWNSDAGYDSGYEADDNQDYAETEQL 354
>gi|118469556|ref|YP_885906.1| DNA-directed RNA polymerase subunit alpha [Mycobacterium smegmatis
str. MC2 155]
gi|158512464|sp|A0QSL8.1|RPOA_MYCS2 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit alpha;
AltName: Full=Transcriptase subunit alpha
gi|118170843|gb|ABK71739.1| DNA-directed RNA polymerase, alpha subunit [Mycobacterium smegmatis
str. MC2 155]
Length=350
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/350 (91%), Positives = 334/350 (96%), Gaps = 3/350 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+ + +NRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEETVAENRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSS++DEPVTMYLRKQGPG VTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKGLVVSSDDDEPVTMYLRKQGPGVVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P MHIATLNDKGKLEVELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLI+DVETKNSISPRDALASAG TLVELFGLARELN ++E IEIGPSPAE
Sbjct 181 TRVEQRTDFDKLIIDVETKNSISPRDALASAGGTLVELFGLARELNADSEHIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK
Sbjct 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAY---DEQDYAETEQL 347
LHQLGLSLKDSP +FDPSEVAGYD ATGTW+++ Y D QDYAETEQL
Sbjct 301 LHQLGLSLKDSPATFDPSEVAGYDAATGTWTSDAGYDLDDNQDYAETEQL 350
>gi|54022804|ref|YP_117046.1| DNA-directed RNA polymerase subunit alpha [Nocardia farcinica
IFM 10152]
gi|61215826|sp|Q5Z1K9.1|RPOA_NOCFA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit alpha;
AltName: Full=Transcriptase subunit alpha
gi|54014312|dbj|BAD55682.1| putative RNA polymerase alpha subunit [Nocardia farcinica IFM
10152]
Length=352
Score = 637 bits (1642), Expect = 1e-180, Method: Compositional matrix adjust.
Identities = 315/352 (90%), Positives = 330/352 (94%), Gaps = 5/352 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTL+E+V+ +NRS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLTEEVIAENRSKFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMY+RKQGPG VTAGDIVPPAGV VHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYVRKQGPGTVTAGDIVPPAGVVVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P MHIATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDMHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+LILDVETKNSIS RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDRLILDVETKNSISARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD-----EQDYAETEQL 347
LH LGLSLKDSP SFDPS V GYD +TGTWS G + EQDYAETEQL
Sbjct 301 LHALGLSLKDSPASFDPSSVVGYDASTGTWSDSGTFSDNDGGEQDYAETEQL 352
>gi|262203540|ref|YP_003274748.1| DNA-directed RNA polymerase subunit alpha [Gordonia bronchialis
DSM 43247]
gi|262086887|gb|ACY22855.1| DNA-directed RNA polymerase, alpha subunit [Gordonia bronchialis
DSM 43247]
Length=350
Score = 634 bits (1636), Expect = 5e-180, Method: Compositional matrix adjust.
Identities = 311/350 (89%), Positives = 334/350 (96%), Gaps = 3/350 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTL+E++L DNRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAA+TSIRIDGVL
Sbjct 1 MLISQRPTLTEEILADNRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAITSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMY+RKQGPG VT DIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYVRKQGPGTVTGADIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+L+LDVETKNSIS RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDRLVLDVETKNSISARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASF+LPI+DL+LTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFSLPIEDLELTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDE---QDYAETEQL 347
LH LGLSLKDSP SFDPS+VAGYD ATGTWS + ++D +D+AETEQL
Sbjct 301 LHALGLSLKDSPASFDPSQVAGYDPATGTWSDDASFDADSGEDFAETEQL 350
>gi|343927694|ref|ZP_08767162.1| DNA-directed RNA polymerase subunit alpha [Gordonia alkanivorans
NBRC 16433]
gi|343762335|dbj|GAA14088.1| DNA-directed RNA polymerase subunit alpha [Gordonia alkanivorans
NBRC 16433]
Length=350
Score = 631 bits (1627), Expect = 5e-179, Method: Compositional matrix adjust.
Identities = 309/350 (89%), Positives = 334/350 (96%), Gaps = 3/350 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTL+E+V+ +NRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAA+TSIRIDGVL
Sbjct 1 MLISQRPTLTEEVIAENRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAITSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSS+EDEPVTMY+RKQGPG VT DIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKGLVVSSDEDEPVTMYVRKQGPGTVTGADIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+L+LDVETKNSIS RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDRLVLDVETKNSISARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASF+LPI+DL+LTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFSLPIEDLELTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDE---QDYAETEQL 347
LH LGLSLKDSP SFDPS+VAGYD ATGTWS + ++D +D+AETEQL
Sbjct 301 LHALGLSLKDSPASFDPSQVAGYDPATGTWSEDASFDADSGEDFAETEQL 350
>gi|296141062|ref|YP_003648305.1| DNA-directed RNA polymerase subunit alpha [Tsukamurella paurometabola
DSM 20162]
gi|296029196|gb|ADG79966.1| DNA-directed RNA polymerase, alpha subunit [Tsukamurella paurometabola
DSM 20162]
Length=352
Score = 629 bits (1622), Expect = 2e-178, Method: Compositional matrix adjust.
Identities = 311/352 (89%), Positives = 334/352 (95%), Gaps = 5/352 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+V++D RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEEVISDARSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSSE+DEPVTMY+RKQGPG VTAGDIVPPA VTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEDDEPVTMYVRKQGPGAVTAGDIVPPASVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+LILDVETKNS++ RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDRLILDVETKNSMTARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIA+F+LPI+DLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIAAFSLPIEDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD-----EQDYAETEQL 347
LH LGL+LKDSP SFDPS+V GYD ATGTWS E ++ +QDYAETEQL
Sbjct 301 LHALGLALKDSPASFDPSQVDGYDPATGTWSDEPSFSGDADGDQDYAETEQL 352
>gi|312140889|ref|YP_004008225.1| DNA-directed RNA polymerase alpha subunit rpoa [Rhodococcus equi
103S]
gi|325675473|ref|ZP_08155157.1| DNA-directed RNA polymerase subunit alpha [Rhodococcus equi ATCC
33707]
gi|311890228|emb|CBH49546.1| DNA-directed RNA polymerase alpha subunit RpoA [Rhodococcus equi
103S]
gi|325553444|gb|EGD23122.1| DNA-directed RNA polymerase subunit alpha [Rhodococcus equi ATCC
33707]
Length=354
Score = 628 bits (1619), Expect = 5e-178, Method: Compositional matrix adjust.
Identities = 312/354 (89%), Positives = 333/354 (95%), Gaps = 7/354 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTL+E+V+ +NRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLTEEVIAENRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMY+RKQGPG VTAGDIVPPAGVTV+N
Sbjct 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYVRKQGPGVVTAGDIVPPAGVTVNN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+LILDVETKNSI+ RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDRLILDVETKNSITARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELV RTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVGRTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWS--TEGAYD-----EQDYAETEQL 347
LH LGL+LKDSP SFDP+ VAGYD ATGTWS G++ +QDYAETEQL
Sbjct 301 LHSLGLALKDSPASFDPTTVAGYDAATGTWSDTDAGSFSDADGTDQDYAETEQL 354
>gi|111023125|ref|YP_706097.1| DNA-directed RNA polymerase subunit alpha [Rhodococcus jostii
RHA1]
gi|226365624|ref|YP_002783407.1| DNA-directed RNA polymerase subunit alpha [Rhodococcus opacus
B4]
gi|119366719|sp|Q0S3E7.1|RPOA_RHOSR RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit alpha;
AltName: Full=Transcriptase subunit alpha
gi|110822655|gb|ABG97939.1| DNA-directed RNA polymerase alpha subunit [Rhodococcus jostii
RHA1]
gi|226244114|dbj|BAH54462.1| DNA-directed RNA polymerase alpha subunit [Rhodococcus opacus
B4]
Length=353
Score = 628 bits (1619), Expect = 5e-178, Method: Compositional matrix adjust.
Identities = 311/353 (89%), Positives = 333/353 (95%), Gaps = 6/353 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTL+E+V+ DNRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLTEEVIADNRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMY+RKQGPG VTAGDIVPPAGVTV+N
Sbjct 61 HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYVRKQGPGAVTAGDIVPPAGVTVNN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+L+LDVETKNSI+ RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDRLVLDVETKNSITARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELV RTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVGRTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWS--TEGAYDE----QDYAETEQL 347
LH LGL+LKDSP SFDP+ VAGYD ATGTWS G++ + +DYAETEQL
Sbjct 301 LHSLGLALKDSPASFDPTTVAGYDAATGTWSDTDAGSFGDAEGTEDYAETEQL 353
>gi|226305370|ref|YP_002765328.1| DNA-directed RNA polymerase alpha chain [Rhodococcus erythropolis
PR4]
gi|229489661|ref|ZP_04383524.1| DNA-directed RNA polymerase, alpha subunit [Rhodococcus erythropolis
SK121]
gi|226184485|dbj|BAH32589.1| DNA-directed RNA polymerase alpha chain [Rhodococcus erythropolis
PR4]
gi|229323758|gb|EEN89516.1| DNA-directed RNA polymerase, alpha subunit [Rhodococcus erythropolis
SK121]
Length=353
Score = 627 bits (1618), Expect = 7e-178, Method: Compositional matrix adjust.
Identities = 311/353 (89%), Positives = 333/353 (95%), Gaps = 6/353 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTL+E+V+ DNRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLTEEVIADNRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVV+SEEDEPVTMY+RKQGPG VTAGDIVPPAGVTV+N
Sbjct 61 HEFTTVPGVKEDVTDIILNLKGLVVNSEEDEPVTMYVRKQGPGAVTAGDIVPPAGVTVNN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+L+LDVETKNSI+ RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDRLVLDVETKNSITARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELV RTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVGRTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWS--TEGAYDE----QDYAETEQL 347
LH LGLSLKDSP SFDP+ VAGYD ATGTWS G++ + +DYAETEQL
Sbjct 301 LHSLGLSLKDSPASFDPTTVAGYDAATGTWSDTDAGSFGDAEGTEDYAETEQL 353
>gi|326383232|ref|ZP_08204920.1| DNA-directed RNA polymerase subunit alpha [Gordonia neofelifaecis
NRRL B-59395]
gi|326197982|gb|EGD55168.1| DNA-directed RNA polymerase subunit alpha [Gordonia neofelifaecis
NRRL B-59395]
Length=350
Score = 626 bits (1615), Expect = 2e-177, Method: Compositional matrix adjust.
Identities = 306/350 (88%), Positives = 331/350 (95%), Gaps = 3/350 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+V+ +NRS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEEVIAENRSKFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT IILNLK LVVSSEEDEPVTMY+RKQGPG VT DIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTNIILNLKGLVVSSEEDEPVTMYVRKQGPGAVTGADIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLE+ELVVERGRGYVPAVQN+A+GAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKATGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+L+LDVETKNS++ RDALASAGKTLVELFGLARELNVEAEGIEIGPSP E
Sbjct 181 TRVEQRTDFDRLVLDVETKNSMTARDALASAGKTLVELFGLARELNVEAEGIEIGPSPQE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIA+F+LPI+DL+LTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIAAFSLPIEDLELTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDE---QDYAETEQL 347
LH LGL+LKDSP SFDPS+VAGYD ATGTWS + ++D +DYAETEQL
Sbjct 301 LHSLGLALKDSPASFDPSQVAGYDPATGTWSDDASFDTDGGEDYAETEQL 350
>gi|333918174|ref|YP_004491755.1| DNA-directed RNA polymerase subunit alpha [Amycolicicoccus subflavus
DQS3-9A1]
gi|333480395|gb|AEF38955.1| DNA-directed RNA polymerase subunit alpha [Amycolicicoccus subflavus
DQS3-9A1]
Length=353
Score = 612 bits (1578), Expect = 3e-173, Method: Compositional matrix adjust.
Identities = 301/353 (86%), Positives = 330/353 (94%), Gaps = 6/353 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRP L+E+++ D+RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPELTEEIVADSRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMY+RKQGPG VTAGDIVPPAGV VHN
Sbjct 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYVRKQGPGAVTAGDIVPPAGVEVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKG+LE+ELVVERGRGYVPA+QN+A+GAEIGRIP+D+IYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNDKGRLEIELVVERGRGYVPALQNKATGAEIGRIPMDAIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+LI+DVETKNSISPRD++ASAGKTLVELFGL RELNVE+EGIEIGPSP E
Sbjct 181 TRVEQRTDFDRLIVDVETKNSISPRDSVASAGKTLVELFGLCRELNVESEGIEIGPSPQE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIA++A+PI+ LDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIAAYAMPIEQLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWST-----EGAY-DEQDYAETEQL 347
LH LGLSLKDSP FDPS VAGYD +TGTW +G Y EQDYAETEQL
Sbjct 301 LHTLGLSLKDSPGPFDPSAVAGYDASTGTWRDTDADGDGDYAAEQDYAETEQL 353
>gi|319948695|ref|ZP_08022816.1| DNA-directed RNA polymerase subunit alpha [Dietzia cinnamea P4]
gi|319437597|gb|EFV92596.1| DNA-directed RNA polymerase subunit alpha [Dietzia cinnamea P4]
Length=344
Score = 596 bits (1536), Expect = 2e-168, Method: Compositional matrix adjust.
Identities = 291/347 (84%), Positives = 324/347 (94%), Gaps = 3/347 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTL+E+V+++NRS+FV+EPLEPGFGYT+GNSLRRTLLSSIPGAAVTSIRI+GVL
Sbjct 1 MLISQRPTLTEEVVSENRSRFVLEPLEPGFGYTIGNSLRRTLLSSIPGAAVTSIRIEGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSS EDEPVTMYL+KQGPG VTAGDIVPPAGV VHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKGLVVSSVEDEPVTMYLKKQGPGAVTAGDIVPPAGVEVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLN+KG+LE+ELVVERGRGYVPA N+ +G EIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNEKGRLEIELVVERGRGYVPAGLNKDAGHEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRV QRTDFD+L+LDVETKNS++ RDALASAGKTLVELFGLARELN EAEGIEIGPSPAE
Sbjct 181 TRVHQRTDFDRLVLDVETKNSMTARDALASAGKTLVELFGLARELNEEAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIA++ +PIDDLDL+VRSYNCLKREGVHTVGELVAR+ESDLLDIRNFGQKSIDEVK+K
Sbjct 241 ADHIAAYGMPIDDLDLSVRSYNCLKREGVHTVGELVARSESDLLDIRNFGQKSIDEVKVK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
L +LGLSLKD+PP FDP+ VAGYD TGTW+ EG +DYAETEQL
Sbjct 301 LVELGLSLKDAPPGFDPASVAGYDAETGTWTDEGG---EDYAETEQL 344
>gi|324999252|ref|ZP_08120364.1| DNA-directed RNA polymerase subunit alpha [Pseudonocardia sp.
P1]
Length=350
Score = 586 bits (1511), Expect = 1e-165, Method: Compositional matrix adjust.
Identities = 293/350 (84%), Positives = 321/350 (92%), Gaps = 3/350 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRP+L+EDV+T+ RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPSLTEDVVTETRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPG VTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKELVVSSEEDEPVTMYLRKQGPGAVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIA+LNDKG+LEVELVVERGRGYVPA+QN+A+GAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIASLNDKGRLEVELVVERGRGYVPAMQNKATGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKL+LDVE+K SI+PRDALAS+GKTLVELFGLARELNV+AEGIEIGPSP E
Sbjct 181 TRVEQRTDFDKLVLDVESKPSITPRDALASSGKTLVELFGLARELNVDAEGIEIGPSPQE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
AD IA+FA+PI++LDLTVRSYNCLKREG+HTVGELV R+E+DLLDIRNFG KSIDEVK+K
Sbjct 241 ADTIAAFAMPIEELDLTVRSYNCLKREGIHTVGELVGRSEADLLDIRNFGAKSIDEVKMK 300
Query 301 LHQLGLSLKDSPPSFDPSEVA---GYDVATGTWSTEGAYDEQDYAETEQL 347
L LGL+LKDSPP FDPS A G D +G D QDYAETEQL
Sbjct 301 LVGLGLALKDSPPGFDPSAAAAEYGVDGGSGFDPDTFGDDGQDYAETEQL 350
>gi|256380567|ref|YP_003104227.1| DNA-directed RNA polymerase subunit alpha [Actinosynnema mirum
DSM 43827]
gi|255924870|gb|ACU40381.1| DNA-directed RNA polymerase, alpha subunit [Actinosynnema mirum
DSM 43827]
Length=350
Score = 586 bits (1510), Expect = 2e-165, Method: Compositional matrix adjust.
Identities = 292/351 (84%), Positives = 321/351 (92%), Gaps = 5/351 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRP+LSE+ +++ RS+FVIEPLEPGFGYTLGNS+RRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPSLSEEAVSETRSRFVIEPLEPGFGYTLGNSIRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPG VTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKELVVSSEEDEPVTMYLRKQGPGAVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLN KGKLE+ELVVERGRGYVPAVQN+ +GAEIGRIPVDSIYSPV+KVTYKV+A
Sbjct 121 PDLHIATLNGKGKLEIELVVERGRGYVPAVQNKQAGAEIGRIPVDSIYSPVMKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVE+K SI+PRDA+ASAGKTLVELFGLARELNV+AEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVESKPSITPRDAVASAGKTLVELFGLARELNVDAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
AD IA+FA+PI+DLDLTVRSYNCLKREG+HTVGELV+R+E+DLLDIRNFG KSIDEVK+K
Sbjct 241 ADTIAAFAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKMK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDE----QDYAETEQL 347
L LGL+LKDSPP FDPS A A G W + + D QDYAETEQL
Sbjct 301 LVGLGLALKDSPPGFDPSAAASDYPAEG-WGADSSVDSHDDGQDYAETEQL 350
>gi|331699145|ref|YP_004335384.1| DNA-directed RNA polymerase subunit alpha [Pseudonocardia dioxanivorans
CB1190]
gi|326953834|gb|AEA27531.1| DNA-directed RNA polymerase subunit alpha [Pseudonocardia dioxanivorans
CB1190]
Length=347
Score = 585 bits (1508), Expect = 4e-165, Method: Compositional matrix adjust.
Identities = 294/348 (85%), Positives = 321/348 (93%), Gaps = 2/348 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTL+ED +T+ RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLTEDSVTETRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPG VTAGDIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKELVVSSEEDEPVTMYLRKQGPGPVTAGDIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKG+LEVELVVERGRGYVPA+QN+A+GAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNDKGRLEVELVVERGRGYVPAMQNKATGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKL+LDVETK SI+PRDALASAGKTLVELFGLARELNV+AEGIEIGPSP E
Sbjct 181 TRVEQRTDFDKLVLDVETKPSITPRDALASAGKTLVELFGLARELNVDAEGIEIGPSPQE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
AD IA+FA+PI++LDLTVRSYNCLKREG+HTVGELV R+E+DLLDIRNFG KSIDEVK+K
Sbjct 241 ADTIAAFAMPIEELDLTVRSYNCLKREGIHTVGELVGRSEADLLDIRNFGAKSIDEVKMK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDE-QDYAETEQL 347
L LGL+LKDSPP FDPS A D + + + D+ QDYAETEQL
Sbjct 301 LVGLGLALKDSPPGFDPS-AAAVDYGSDGFDPDTFGDDGQDYAETEQL 347
>gi|134103231|ref|YP_001108892.1| DNA-directed RNA polymerase subunit alpha [Saccharopolyspora
erythraea NRRL 2338]
gi|291007977|ref|ZP_06565950.1| DNA-directed RNA polymerase subunit alpha [Saccharopolyspora
erythraea NRRL 2338]
gi|158513554|sp|A4FPJ2.1|RPOA_SACEN RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit alpha;
AltName: Full=Transcriptase subunit alpha
gi|133915854|emb|CAM05967.1| DNA-directed RNA polymerase, alpha subunit [Saccharopolyspora
erythraea NRRL 2338]
Length=359
Score = 582 bits (1500), Expect = 3e-164, Method: Compositional matrix adjust.
Identities = 291/360 (81%), Positives = 322/360 (90%), Gaps = 14/360 (3%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRP+L+E+ + + RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTS+RIDGVL
Sbjct 1 MLISQRPSLAEEAVAETRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSLRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTT+PGVKEDVT++ILNLK LVVSSEEDEPVTMYLRKQGPGEVTA DIVPPAGVTVHN
Sbjct 61 HEFTTIPGVKEDVTDVILNLKELVVSSEEDEPVTMYLRKQGPGEVTAADIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLN KGKLE+ELVVERGRGYVPAVQN+ +GAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNGKGKLEIELVVERGRGYVPAVQNKQTGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETK SI+PRDA+ASAG+TLVELFGLARELNV+AEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLILDVETKPSITPRDAVASAGRTLVELFGLARELNVDAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
AD IA++A+PI+DLDLTVRSYNCLKREG+HTVGELV+R+E+DLLDIRNFG KSIDEVK+K
Sbjct 241 ADTIAAYAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKLK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTE-------------GAYDEQDYAETEQL 347
L LGLSLKDSPP FDPS A + G W++E G D QDYAETEQL
Sbjct 301 LVGLGLSLKDSPPGFDPSAAAAEYPSEG-WASETETVGGLGRVEDNGYDDGQDYAETEQL 359
>gi|257054498|ref|YP_003132330.1| DNA-directed RNA polymerase subunit alpha [Saccharomonospora
viridis DSM 43017]
gi|256584370|gb|ACU95503.1| DNA-directed RNA polymerase subunit alpha [Saccharomonospora
viridis DSM 43017]
Length=358
Score = 580 bits (1495), Expect = 1e-163, Method: Compositional matrix adjust.
Identities = 289/358 (81%), Positives = 318/358 (89%), Gaps = 11/358 (3%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRPTLSE+ + + RS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPTLSEETVNETRSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEF+TVPGVKEDVTEIILNLK LVVSSEEDEPVTMYLRKQGPGEVTA DIVPP+GVTVHN
Sbjct 61 HEFSTVPGVKEDVTEIILNLKELVVSSEEDEPVTMYLRKQGPGEVTAADIVPPSGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIA+LN KGKLE+ELVVERGRGYVPA+QN+ +GAEIGRIP+DSIYSPVLKVTYKV+A
Sbjct 121 PDLHIASLNGKGKLEIELVVERGRGYVPALQNKQAGAEIGRIPIDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKL+LDVETK SI+PRDA+ASAGKTLVELFGLARELNV+AEGIEIGPSP E
Sbjct 181 TRVEQRTDFDKLVLDVETKPSITPRDAVASAGKTLVELFGLARELNVDAEGIEIGPSPQE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
AD IA++A+PI+DLDLTVRSYNCLKREG+HTVGELV+R+E+DLLDIRNFG KSIDEVK+K
Sbjct 241 ADTIAAYAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKMK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAY-----------DEQDYAETEQL 347
L LGL+LKDSPP FDP+ A GT T GA D QDYAETEQL
Sbjct 301 LAGLGLTLKDSPPGFDPTAAASTYGGAGTSQTWGAQPSTGLPDTGHDDGQDYAETEQL 358
>gi|300782639|ref|YP_003762930.1| DNA-directed RNA polymerase subunit alpha [Amycolatopsis mediterranei
U32]
gi|299792153|gb|ADJ42528.1| DNA-directed RNA polymerase subunit alpha [Amycolatopsis mediterranei
U32]
gi|340524010|gb|AEK39215.1| DNA-directed RNA polymerase subunit alpha [Amycolatopsis mediterranei
S699]
Length=356
Score = 575 bits (1482), Expect = 3e-162, Method: Compositional matrix adjust.
Identities = 289/357 (81%), Positives = 317/357 (89%), Gaps = 11/357 (3%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRP L E+ + + RS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPALGEETVNETRSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPGEVTA DIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKELVVSSEEDEPVTMYLRKQGPGEVTAADIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIA+LN KGKLE+ELVVERGRGYVPA+QN+ +GAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIASLNGKGKLEIELVVERGRGYVPALQNKQAGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETK SI+PRDA+ASAGKTLVELFGLARELNV+AEGIEIGPSP E
Sbjct 181 TRVEQRTDFDKLILDVETKPSITPRDAVASAGKTLVELFGLARELNVDAEGIEIGPSPQE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
AD IA++A+PI+DLDLTVRSYNCLKREG+HTVGELV+R+E+DLLDIRNFG KSIDEVK+K
Sbjct 241 ADTIAAYAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKLK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWS----------TEGAYDEQDYAETEQL 347
L LGL+LKDSPP FDP+ A G WS ++G D QDYAETEQL
Sbjct 301 LVGLGLALKDSPPGFDPTAAAASYDGEG-WSEGVGGIADGISDGHDDGQDYAETEQL 356
>gi|302524022|ref|ZP_07276364.1| DNA-directed RNA polymerase, alpha subunit [Streptomyces sp.
AA4]
gi|302432917|gb|EFL04733.1| DNA-directed RNA polymerase, alpha subunit [Streptomyces sp.
AA4]
Length=357
Score = 570 bits (1470), Expect = 9e-161, Method: Compositional matrix adjust.
Identities = 290/360 (81%), Positives = 316/360 (88%), Gaps = 16/360 (4%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRP L E+ + + RS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPALGEETVNETRSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPGEVTA DIVPPAGVTVHN
Sbjct 61 HEFTTVPGVKEDVTDIILNLKELVVSSEEDEPVTMYLRKQGPGEVTAADIVPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIA+LN KGKLE+ELVVERGRGYVPA+QN+ +GAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIASLNGKGKLEIELVVERGRGYVPALQNKQAGAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETK SI+ RDA+ASAGKTLVELFGLARELNV+AEGIEIGPSP E
Sbjct 181 TRVEQRTDFDKLILDVETKPSITARDAVASAGKTLVELFGLARELNVDAEGIEIGPSPQE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
AD IA++A+PI+DLDLTVRSYNCLKREG+HTVGELV+R+E+DLLDIRNFG KSIDEVK+K
Sbjct 241 ADTIAAYAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKLK 300
Query 301 LHQLGLSLKDSPPSFDPSEVA-GYDVATGTWSTEGAY------------DEQDYAETEQL 347
L LGL+LKDSPP FDPS A YD G +EG D QDYAETEQL
Sbjct 301 LVGLGLALKDSPPGFDPSAAATSYD---GEGWSEGVAGIGGGISDDGHDDGQDYAETEQL 357
>gi|258651412|ref|YP_003200568.1| DNA-directed RNA polymerase subunit alpha [Nakamurella multipartita
DSM 44233]
gi|258554637|gb|ACV77579.1| DNA-directed RNA polymerase, alpha subunit [Nakamurella multipartita
DSM 44233]
Length=360
Score = 559 bits (1440), Expect = 3e-157, Method: Compositional matrix adjust.
Identities = 279/362 (78%), Positives = 312/362 (87%), Gaps = 17/362 (4%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRP+L+E+ + DNRS+F+IEPLEPGFGYTLGNSLRRTLLSSIPGA+VTSIR+DGVL
Sbjct 1 MLISQRPSLTEEPVADNRSRFIIEPLEPGFGYTLGNSLRRTLLSSIPGASVTSIRVDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKED+TE+ILNLK LVVSSE+DEPVTMYLRKQGPG+VTA DI PPAGVTVHN
Sbjct 61 HEFTTVPGVKEDITELILNLKELVVSSEDDEPVTMYLRKQGPGDVTAADIAPPAGVTVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
+ +ATL KGKLE+ELVVERGRGYVPA N+ GAEIGRIPVDSIYSPVLKVTY+V+A
Sbjct 121 SDLKLATLTKKGKLEIELVVERGRGYVPASPNKVVGAEIGRIPVDSIYSPVLKVTYRVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKL+LDVETK SI+PRDALASAG TLVELFGLARELNV+AEGIEIGPSPAE
Sbjct 181 TRVEQRTDFDKLVLDVETKPSITPRDALASAGTTLVELFGLARELNVDAEGIEIGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
ADHIA+F LPI+++DLTVRSYNCLKREG+HTVGELV+RTE+DLLDIRNFGQKSIDEVKIK
Sbjct 241 ADHIAAFGLPIEEMDLTVRSYNCLKREGIHTVGELVSRTEADLLDIRNFGQKSIDEVKIK 300
Query 301 LHQLGLSLKDSPPSFDPSEVA---------------GYDVATGTWSTEGAYDEQDYAETE 345
L +GL+LKDSP FDP+ A GY G T D+ DYAETE
Sbjct 301 LAGMGLALKDSPAGFDPAAAALSYGDTDWNDDTDDSGYGSLAGLGGT--PQDDTDYAETE 358
Query 346 QL 347
Q+
Sbjct 359 QI 360
>gi|284992846|ref|YP_003411400.1| DNA-directed RNA polymerase subunit alpha [Geodermatophilus obscurus
DSM 43160]
gi|284066091|gb|ADB77029.1| DNA-directed RNA polymerase, alpha subunit [Geodermatophilus
obscurus DSM 43160]
Length=358
Score = 551 bits (1419), Expect = 8e-155, Method: Compositional matrix adjust.
Identities = 272/358 (76%), Positives = 308/358 (87%), Gaps = 11/358 (3%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLI+QRPTL+E+ +++ RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRI+G L
Sbjct 1 MLIAQRPTLTEETISEQRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIEGTL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVTEIILNLK LVVSS+ DEPVTMYLRKQGPGEVTA DI PPAGV VHN
Sbjct 61 HEFTTVPGVKEDVTEIILNLKGLVVSSDSDEPVTMYLRKQGPGEVTAADIAPPAGVEVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLN KG+LE+ELVVERGRGYVPA QN+ G EIGRIPVDSIYSPVLKVTY V+A
Sbjct 121 PELHIATLNGKGRLEIELVVERGRGYVPAPQNKQPGQEIGRIPVDSIYSPVLKVTYAVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+L++DVETK SI+PRDA+ASAG TLVELFGL RELN++AEGIE+GPSPAE
Sbjct 181 TRVEQRTDFDRLVVDVETKPSIAPRDAIASAGSTLVELFGLLRELNIDAEGIEVGPSPAE 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
A IA+F++PI+D+DLTVRSYNCLKREGVHTVGELV R+E+DLLDIRNFG KSIDEVK+K
Sbjct 241 AADIANFSMPIEDMDLTVRSYNCLKREGVHTVGELVTRSEADLLDIRNFGAKSIDEVKMK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEG-----------AYDEQDYAETEQL 347
L +GL+LKDSPP F P+ V YD T + +G YD+ Y ETEQL
Sbjct 301 LAAMGLALKDSPPGFIPTSVESYDEGYETDAYQGHGEFAAGYDQVQYDDGTYQETEQL 358
>gi|334336213|ref|YP_004541365.1| DNA-directed RNA polymerase subunit alpha [Isoptericola variabilis
225]
gi|334106581|gb|AEG43471.1| DNA-directed RNA polymerase subunit alpha [Isoptericola variabilis
225]
Length=338
Score = 543 bits (1399), Expect = 2e-152, Method: Compositional matrix adjust.
Identities = 272/342 (80%), Positives = 303/342 (89%), Gaps = 5/342 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLI+QRPTL+E+V++++RS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLIAQRPTLTEEVISEHRSRFSIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEF+TVPGVKEDVTEIILN+K++VVSSE DEPV MYLRKQG G VTA DIVPPAGV VHN
Sbjct 61 HEFSTVPGVKEDVTEIILNIKNIVVSSENDEPVVMYLRKQGAGVVTAADIVPPAGVEVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLE+EL VERGRGYV A QN+++ AEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNDKGKLEIELTVERGRGYVSAAQNKSAEAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLI+DVETK +ISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSP +
Sbjct 181 TRVEQRTDFDKLIVDVETKAAISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPTD 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
+ A ALPI++L+LT+RSYNCLKREG+H VGELVAR+E+DLLDIRNFG KSI+EVK K
Sbjct 241 SALAADLALPIEELNLTIRSYNCLKREGIHQVGELVARSEADLLDIRNFGAKSINEVKEK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAY-DEQDY 341
L +LGLSLKDSP FDPS A Y G E AY DEQ Y
Sbjct 301 LAELGLSLKDSPLDFDPSGAAYY----GGGDDEAAYTDEQQY 338
>gi|269955462|ref|YP_003325251.1| DNA-directed RNA polymerase subunit alpha [Xylanimonas cellulosilytica
DSM 15894]
gi|269304143|gb|ACZ29693.1| DNA-directed RNA polymerase, alpha subunit [Xylanimonas cellulosilytica
DSM 15894]
Length=334
Score = 539 bits (1388), Expect = 3e-151, Method: Compositional matrix adjust.
Identities = 270/339 (80%), Positives = 301/339 (89%), Gaps = 6/339 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLI+QRPTL+E+V+++NR++F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLIAQRPTLTEEVISENRTRFAIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVTEIILN+K+LVVSSE DEPV MYLRKQG G VTA DIVPPAGV VHN
Sbjct 61 HEFTTVPGVKEDVTEIILNIKNLVVSSENDEPVVMYLRKQGAGAVTAADIVPPAGVEVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLE+EL VERGRGYV A QN++ AEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNDKGKLEIELTVERGRGYVSAAQNKSLDAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLI+DVETK +I+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSP +
Sbjct 181 TRVEQRTDFDKLIVDVETKPAITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPTD 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
+ A ALPI++L+LT+RSYNCLKREG+H VGELVAR+E+DLLDIRNFG KSI+EVK K
Sbjct 241 SALAADLALPIEELNLTIRSYNCLKREGIHQVGELVARSEADLLDIRNFGAKSINEVKEK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQ 339
L +LGL+LKDSP FDPS + YD T AYDEQ
Sbjct 301 LAELGLALKDSPLDFDPS-ASFYDGGDDT-----AYDEQ 333
>gi|296394890|ref|YP_003659774.1| DNA-directed RNA polymerase subunit alpha [Segniliparus rotundus
DSM 44985]
gi|296182037|gb|ADG98943.1| DNA-directed RNA polymerase, alpha subunit [Segniliparus rotundus
DSM 44985]
Length=350
Score = 536 bits (1381), Expect = 2e-150, Method: Compositional matrix adjust.
Identities = 273/352 (78%), Positives = 306/352 (87%), Gaps = 7/352 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRP L+E+V+ + RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPVLTEEVVGEYRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTT+ GVKEDVTEI+LN+K L VSS EDEP T+YLRKQGPG VTA DIV PAGVT+
Sbjct 61 HEFTTIAGVKEDVTEIVLNVKGLEVSSVEDEPATLYLRKQGPGPVTAADIVAPAGVTITK 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P HIATLNDKGKLE+ELVVERGRGYVPAVQN+ SGAEIGRIPVDSIYSPVLKVTY+V+A
Sbjct 121 PETHIATLNDKGKLEMELVVERGRGYVPAVQNKDSGAEIGRIPVDSIYSPVLKVTYQVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+LILDVETK+SI+PRDA+ASAGKTLVELFGLARELN+ AEGIEIG A
Sbjct 181 TRVEQRTDFDRLILDVETKSSITPRDAVASAGKTLVELFGLARELNLAAEGIEIGSVAAA 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
++IAS LPI+DL LTVRSYNCLKREGVHT+GELVAR+ESDLLDIRNFGQKSIDEVK+K
Sbjct 241 TNNIASLGLPIEDLHLTVRSYNCLKREGVHTIGELVARSESDLLDIRNFGQKSIDEVKLK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDE-----QDYAETEQL 347
L+ LGL+LKDSP +FDPS + +D G W + D +D+AETE L
Sbjct 301 LYTLGLALKDSPANFDPSNI-DFD-EDGAWDGDDDQDTEDLDGEDFAETEDL 350
>gi|317505829|ref|ZP_07963674.1| DNA-directed RNA polymerase [Segniliparus rugosus ATCC BAA-974]
gi|316255911|gb|EFV15136.1| DNA-directed RNA polymerase [Segniliparus rugosus ATCC BAA-974]
Length=350
Score = 535 bits (1377), Expect = 6e-150, Method: Compositional matrix adjust.
Identities = 262/320 (82%), Positives = 294/320 (92%), Gaps = 0/320 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRP L+E+V+++ RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLISQRPVLTEEVVSEYRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTT+ GVKEDVTEI+LN+K L VSS EDEP T+YLRKQGPG VTA DIV P+GVT+
Sbjct 61 HEFTTIAGVKEDVTEIVLNVKGLEVSSVEDEPATLYLRKQGPGPVTAADIVAPSGVTITK 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P HIATLNDKGKLE+ELVVERGRGYVPAVQN+ SGAEIGRIPVDSIYSPVLKVTY+V+A
Sbjct 121 PDTHIATLNDKGKLEMELVVERGRGYVPAVQNKDSGAEIGRIPVDSIYSPVLKVTYQVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+LILDVE+K+SI+PRDA+ASAGKTLVELFGLARELN+ AEGIEIG A
Sbjct 181 TRVEQRTDFDRLILDVESKSSITPRDAVASAGKTLVELFGLARELNLAAEGIEIGAVAAS 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
++IAS ALPI+DL LTVRSYNCLKREGVHT+GELVAR+ESDLLDIRNFGQKSIDEVK+K
Sbjct 241 TNNIASLALPIEDLHLTVRSYNCLKREGVHTIGELVARSESDLLDIRNFGQKSIDEVKLK 300
Query 301 LHQLGLSLKDSPPSFDPSEV 320
L+ LGL+LKDSP +FDPS +
Sbjct 301 LYTLGLALKDSPANFDPSNI 320
>gi|336116819|ref|YP_004571586.1| DNA-directed RNA polymerase subunit alpha [Microlunatus phosphovorus
NM-1]
gi|334684598|dbj|BAK34183.1| DNA-directed RNA polymerase subunit alpha [Microlunatus phosphovorus
NM-1]
Length=341
Score = 534 bits (1376), Expect = 7e-150, Method: Compositional matrix adjust.
Identities = 269/346 (78%), Positives = 299/346 (87%), Gaps = 6/346 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLI+QRPTLSEDVL+D RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSI+IDG L
Sbjct 1 MLIAQRPTLSEDVLSDYRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIKIDGNL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEF+T+ GV EDVTEIILNLK LVVSSEEDEPVTMYLRK G G VTA DI PPAGV VHN
Sbjct 61 HEFSTIEGVVEDVTEIILNLKGLVVSSEEDEPVTMYLRKAGAGAVTAADIAPPAGVEVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLN+ G+LE+ELVVERGRGYV AVQN+A AEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PELHIATLNENGRLEMELVVERGRGYVSAVQNKAIDAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+LILDVETK ++ PRDA+ASAG+TLVELFGLARELNVEAEGIEIGPSP +
Sbjct 181 TRVEQRTDFDRLILDVETKPALQPRDAVASAGRTLVELFGLARELNVEAEGIEIGPSPID 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
A ALP++DL+LTVRSYNCLKREG+HTV ELV+R+E DLLDIRNFG KSIDEVK+K
Sbjct 241 EQLAADLALPVEDLNLTVRSYNCLKREGIHTVSELVSRSEQDLLDIRNFGSKSIDEVKLK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQ 346
LH++GLSLKDS P FDP A G + D+ DY+ETEQ
Sbjct 301 LHEMGLSLKDSAPGFDPLS------AIGRYDDLDEDDDADYSETEQ 340
>gi|336319962|ref|YP_004599930.1| DNA-directed RNA polymerase subunit alpha [Cellvibrio gilvus
ATCC 13127]
gi|336103543|gb|AEI11362.1| DNA-directed RNA polymerase, alpha subunit [Cellvibrio gilvus
ATCC 13127]
Length=336
Score = 534 bits (1376), Expect = 8e-150, Method: Compositional matrix adjust.
Identities = 273/346 (79%), Positives = 302/346 (88%), Gaps = 11/346 (3%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLI+QRPTL+E+V+++NRS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLIAQRPTLTEEVISENRSRFSIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEF+TVPGVKEDVTEIILN+K+LVVSSE DEPV MYLRKQGPG V+A DIVPPAGV VHN
Sbjct 61 HEFSTVPGVKEDVTEIILNIKNLVVSSENDEPVVMYLRKQGPGLVSAADIVPPAGVEVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +H+ATLNDKGKLE+EL VERGRGYV A QN+A AEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHLATLNDKGKLEIELTVERGRGYVSANQNKAYDAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLI+DVETK +ISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSP +
Sbjct 181 TRVEQRTDFDKLIVDVETKAAISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPTD 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
A A ALPI+DL LT+RSYNCLKREG+HTVGELVAR+E+DLLDIRNFG KSI EVK K
Sbjct 241 AALAADLALPIEDLQLTIRSYNCLKREGIHTVGELVARSEADLLDIRNFGAKSITEVKEK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQ 346
L +LGL+LKDSP FDP++ A Y DE D+ E EQ
Sbjct 301 LAELGLNLKDSPLDFDPTQSAYY-----------GDDEGDFVEDEQ 335
>gi|332669545|ref|YP_004452553.1| DNA-directed RNA polymerase subunit alpha [Cellulomonas fimi
ATCC 484]
gi|332338583|gb|AEE45166.1| DNA-directed RNA polymerase, alpha subunit [Cellulomonas fimi
ATCC 484]
Length=336
Score = 532 bits (1371), Expect = 3e-149, Method: Compositional matrix adjust.
Identities = 272/346 (79%), Positives = 300/346 (87%), Gaps = 11/346 (3%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLI+QRPTL+E+V+++NRS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLIAQRPTLTEEVISENRSRFSIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEF+TVPGVKEDVTEIILN+K+LVVSSE DEPV MYLRKQG G VTA DIVPPAGV VHN
Sbjct 61 HEFSTVPGVKEDVTEIILNIKNLVVSSENDEPVVMYLRKQGSGVVTAADIVPPAGVEVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +H+ATLNDKGKLE+EL VERGRGYV A QN++ AEIGRIPVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHLATLNDKGKLEIELTVERGRGYVSAAQNKSFEAEIGRIPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLI+DVETK +ISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSP +
Sbjct 181 TRVEQRTDFDKLIVDVETKAAISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPTD 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
A A ALPI+DL LT+RSYNCLKREG+HTVGELVAR+E+DLLDIRNFG KSI EVK K
Sbjct 241 AALAADLALPIEDLQLTIRSYNCLKREGIHTVGELVARSEADLLDIRNFGAKSITEVKEK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQ 346
L +LGL+LKDSP FDP+ A Y DE D+ E EQ
Sbjct 301 LAELGLTLKDSPLDFDPTASAYY-----------GEDEGDFVEDEQ 335
>gi|317125840|ref|YP_004099952.1| DNA-directed RNA polymerase subunit alpha [Intrasporangium calvum
DSM 43043]
gi|315589928|gb|ADU49225.1| DNA-directed RNA polymerase subunit alpha [Intrasporangium calvum
DSM 43043]
Length=341
Score = 532 bits (1370), Expect = 4e-149, Method: Compositional matrix adjust.
Identities = 269/347 (78%), Positives = 299/347 (87%), Gaps = 6/347 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLI+QRP LSE+V+ DNRS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLIAQRPVLSEEVVADNRSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVTE+ILN+K LVVSSE DEPV MYLRKQGPG VTAGDI PPAGV VHN
Sbjct 61 HEFTTVPGVKEDVTEMILNIKGLVVSSEHDEPVVMYLRKQGPGVVTAGDITPPAGVEVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P + IATLNDKGKLE+EL VERGRGYV A QN++ EIGRIPVDSIYSPVL VTYKV+A
Sbjct 121 PDLAIATLNDKGKLEMELTVERGRGYVSAQQNKSGDQEIGRIPVDSIYSPVLAVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLI+DVETKNS++PRDA+AS+GKTLVELFGLARELNVEAEGI++GPSP +
Sbjct 181 TRVEQRTDFDKLIVDVETKNSMTPRDAMASSGKTLVELFGLARELNVEAEGIDMGPSPTD 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
A A ALPI+DLDLTVRSYNCLKREG+HTVGELV R+E+DLLDIRNFG KSIDEVK K
Sbjct 241 AALAADLALPIEDLDLTVRSYNCLKREGIHTVGELVGRSEADLLDIRNFGAKSIDEVKAK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347
L +GL+LKDSPP FDPS + + E D++ + E EQL
Sbjct 301 LVGMGLALKDSPPGFDPSALV------DNYGDEDYNDDESFVEDEQL 341
>gi|312199992|ref|YP_004020053.1| DNA-directed RNA polymerase, subunit alpha [Frankia sp. EuI1c]
gi|311231328|gb|ADP84183.1| DNA-directed RNA polymerase, alpha subunit [Frankia sp. EuI1c]
Length=350
Score = 530 bits (1366), Expect = 1e-148, Method: Compositional matrix adjust.
Identities = 261/349 (75%), Positives = 298/349 (86%), Gaps = 3/349 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLI+QRPTL+E+ + + RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGA+VTSIRIDGVL
Sbjct 1 MLIAQRPTLAEEPIAEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGASVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEF+TVPGVKEDVT++ILNLK LVVSS+ DEP MYLRKQGPGEVTA DI PPAGV VHN
Sbjct 61 HEFSTVPGVKEDVTDVILNLKELVVSSDNDEPTVMYLRKQGPGEVTAADIAPPAGVEVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +H+AT+NDKGKLE+EL VERGRGYV A QN+ G EIGRIP+DSIYSPVLKVTYKV+A
Sbjct 121 PELHLATINDKGKLEIELTVERGRGYVSAAQNKQPGQEIGRIPIDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLI+DVETK SISPRDA+ASAGKTLV LFGLA+ELN EAEG++IGPS +
Sbjct 181 TRVEQRTDFDKLIVDVETKPSISPRDAMASAGKTLVGLFGLAQELNAEAEGVDIGPSAQD 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
A A ALPI+++DLTVRSYNCLKREG+HT+GELV+R+E+DLLDIRNFGQKSIDEVK K
Sbjct 241 AQLAADLALPIEEMDLTVRSYNCLKREGIHTIGELVSRSEADLLDIRNFGQKSIDEVKTK 300
Query 301 LHQLGLSLKDSPPSFDPSEVA---GYDVATGTWSTEGAYDEQDYAETEQ 346
L +GL LKDSPP FDP + G D + +S D +Y ETEQ
Sbjct 301 LGAMGLQLKDSPPGFDPRQAVDTYGTDTYSPPFSAGHDDDGSEYVETEQ 349
>gi|172040041|ref|YP_001799755.1| DNA-directed RNA polymerase subunit alpha [Corynebacterium urealyticum
DSM 7109]
gi|171851345|emb|CAQ04321.1| DNA-directed RNA polymerase, alpha subunit [Corynebacterium urealyticum
DSM 7109]
Length=337
Score = 530 bits (1364), Expect = 2e-148, Method: Compositional matrix adjust.
Identities = 264/344 (77%), Positives = 301/344 (88%), Gaps = 8/344 (2%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLISQRP LSE+ + D+RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTS+RIDGVL
Sbjct 1 MLISQRPELSEEFIDDSRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSLRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDV++IILN+KSLV+SS+ DEPVTMYLRK+G G VT DI PAGV VHN
Sbjct 61 HEFTTVPGVKEDVSDIILNIKSLVLSSDFDEPVTMYLRKEGAGAVTGADIETPAGVEVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
+HIATLN++GKL++ELVVERGRGYVPA S EIGRIPVD IYSPVLKV+YKV+A
Sbjct 121 KDLHIATLNEQGKLDIELVVERGRGYVPAA---TSTDEIGRIPVDQIYSPVLKVSYKVEA 177
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLILDVETK+S+S RDA+ASAGKTLVELFGLA+ELN+EAEGIEIGPSP E
Sbjct 178 TRVEQRTDFDKLILDVETKSSMSARDAMASAGKTLVELFGLAQELNIEAEGIEIGPSPQE 237
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
++HIA++ +PI+DLD +VRSYNCLKRE +HTVGEL ARTESDLLDIRNFGQKSI+EVK+K
Sbjct 238 SEHIAAYNMPIEDLDFSVRSYNCLKREEIHTVGELAARTESDLLDIRNFGQKSINEVKVK 297
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTW-STEGAYDEQDYAE 343
L LGL+LKDSP FD S++ GYD TG W TEG +D AE
Sbjct 298 LAGLGLALKDSPEGFDLSDIEGYDAETGEWVETEG----EDIAE 337
>gi|269796227|ref|YP_003315682.1| DNA-directed RNA polymerase subunit alpha [Sanguibacter keddieii
DSM 10542]
gi|269098412|gb|ACZ22848.1| DNA-directed RNA polymerase subunit alpha [Sanguibacter keddieii
DSM 10542]
Length=334
Score = 529 bits (1363), Expect = 2e-148, Method: Compositional matrix adjust.
Identities = 266/324 (83%), Positives = 293/324 (91%), Gaps = 0/324 (0%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLI+QRPTL+E+V++++RS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct 1 MLIAQRPTLTEEVISESRSRFSIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEFTTVPGVKEDVTEIILN+K+LVVSSE DEPV MYLRKQG G VTA DIVPPAGV VHN
Sbjct 61 HEFTTVPGVKEDVTEIILNVKNLVVSSENDEPVVMYLRKQGSGVVTAADIVPPAGVEVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P +HIATLNDKGKLE+EL VERGRGYV A QN++ AEIGR+PVDSIYSPVLKVTYKV+A
Sbjct 121 PDLHIATLNDKGKLEIELTVERGRGYVSAQQNKSFDAEIGRVPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFDKLI+DVETK +ISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSP +
Sbjct 181 TRVEQRTDFDKLIVDVETKQAISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPTD 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
A A ALPI+DL LT+RSYNCLKREG+H VGELVAR+E+DLLDIRNFG KSI+EVK K
Sbjct 241 AALAADLALPIEDLQLTIRSYNCLKREGIHAVGELVARSEADLLDIRNFGAKSINEVKDK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYD 324
L +LGLSLKDSP FDP+ YD
Sbjct 301 LAELGLSLKDSPLDFDPTTADYYD 324
>gi|284033971|ref|YP_003383902.1| DNA-directed RNA polymerase subunit alpha [Kribbella flavida
DSM 17836]
gi|283813264|gb|ADB35103.1| DNA-directed RNA polymerase, alpha subunit [Kribbella flavida
DSM 17836]
Length=341
Score = 528 bits (1361), Expect = 4e-148, Method: Compositional matrix adjust.
Identities = 256/346 (74%), Positives = 302/346 (88%), Gaps = 6/346 (1%)
Query 1 MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
MLI+QRPTL+E+V+ ++RS+FVIEPLEPGFGYTLGNS+RRTLLSSIPGAAVTSI++DGVL
Sbjct 1 MLIAQRPTLTEEVVGEHRSRFVIEPLEPGFGYTLGNSIRRTLLSSIPGAAVTSIKVDGVL 60
Query 61 HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
HEF+TV GVKED T++ILNLK LVVSSE DEPVTMYLRKQGPG+VTA DI PPAGV VHN
Sbjct 61 HEFSTVAGVKEDATQLILNLKDLVVSSEHDEPVTMYLRKQGPGDVTAADIAPPAGVEVHN 120
Query 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
P + IATLN+KG+LE+ELVVERGRGYV A+QN+++ AEIGR+PVDSIYSPVLKVTYKV+A
Sbjct 121 PDLKIATLNEKGRLEMELVVERGRGYVSAIQNKSADAEIGRMPVDSIYSPVLKVTYKVEA 180
Query 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
TRVEQRTDFD+L++DVETK S+ PRDA+ASAGKTLVELFGLARELNVEAEGI+IGPSP +
Sbjct 181 TRVEQRTDFDRLVVDVETKPSMLPRDAVASAGKTLVELFGLARELNVEAEGIDIGPSPVD 240
Query 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300
A ALP++DL LTVRSYNCLKREG+HTVGEL++R+E DLLDIRNFG KSIDEVK+K
Sbjct 241 EQMAADLALPVEDLQLTVRSYNCLKREGIHTVGELISRSEQDLLDIRNFGSKSIDEVKLK 300
Query 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQ 346
L ++GLSLKDSPP FD A + + +++ +AETEQ
Sbjct 301 LAEMGLSLKDSPPGFD------LRAAAEAYGDDAEDEDESFAETEQ 340
Lambda K H
0.313 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 639159047676
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40