BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3459c

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610595|ref|NP_217976.1|  30S ribosomal protein S11 [Mycobact...   278    2e-73
gi|31794635|ref|NP_857128.1|  30S ribosomal protein S11 [Mycobact...   276    7e-73
gi|289759622|ref|ZP_06519000.1|  LOW QUALITY PROTEIN: 30S ribosom...   252    1e-65
gi|240167781|ref|ZP_04746440.1|  30S ribosomal protein S11 [Mycob...   240    4e-62
gi|118616623|ref|YP_904955.1|  30S ribosomal protein S11 [Mycobac...   237    4e-61
gi|118467427|ref|YP_885904.1|  30S ribosomal protein S11 [Mycobac...   234    3e-60
gi|333991922|ref|YP_004524536.1|  30S ribosomal protein S11 RpsK ...   232    2e-59
gi|120402445|ref|YP_952274.1|  30S ribosomal protein S11 [Mycobac...   231    4e-59
gi|41410329|ref|NP_963165.1|  30S ribosomal protein S11 [Mycobact...   229    1e-58
gi|145225548|ref|YP_001136226.1|  30S ribosomal protein S11 [Myco...   229    1e-58
gi|342861867|ref|ZP_08718512.1|  30S ribosomal protein S11 [Mycob...   228    2e-58
gi|254819219|ref|ZP_05224220.1|  30S ribosomal protein S11 [Mycob...   228    2e-58
gi|15828061|ref|NP_302324.1|  30S ribosomal protein S11 [Mycobact...   228    3e-58
gi|169630851|ref|YP_001704500.1|  30S ribosomal protein S11 [Myco...   227    4e-58
gi|336460706|gb|EGO39596.1|  30S ribosomal protein S11 [Mycobacte...   227    6e-58
gi|333918172|ref|YP_004491753.1|  30S ribosomal protein S11 [Amyc...   225    2e-57
gi|296168683|ref|ZP_06850432.1|  30S ribosomal protein S11 [Mycob...   224    3e-57
gi|108798083|ref|YP_638280.1|  30S ribosomal protein S11 [Mycobac...   224    4e-57
gi|226305368|ref|YP_002765326.1|  30S ribosomal protein S11 [Rhod...   222    1e-56
gi|111023123|ref|YP_706095.1|  30S ribosomal protein S11 [Rhodoco...   222    2e-56
gi|226365622|ref|YP_002783405.1|  30S ribosomal protein S11 [Rhod...   221    4e-56
gi|54022802|ref|YP_117044.1|  30S ribosomal protein S11 [Nocardia...   219    9e-56
gi|296141064|ref|YP_003648307.1|  30S ribosomal protein S11 [Tsuk...   214    4e-54
gi|317505827|ref|ZP_07963672.1|  30S ribosomal protein S11 [Segni...   214    5e-54
gi|296394892|ref|YP_003659776.1|  30S ribosomal protein S11 [Segn...   213    7e-54
gi|343927696|ref|ZP_08767164.1|  30S ribosomal protein S11 [Gordo...   211    4e-53
gi|88854651|ref|ZP_01129317.1|  30S ribosomal protein S11 [marine...   211    4e-53
gi|262203542|ref|YP_003274750.1|  30S ribosomal protein S11 [Gord...   210    6e-53
gi|86739321|ref|YP_479721.1|  30S ribosomal protein S11 [Frankia ...   208    2e-52
gi|111220572|ref|YP_711366.1|  30S ribosomal protein S11 [Frankia...   208    2e-52
gi|326383230|ref|ZP_08204918.1|  30S ribosomal protein S11 [Gordo...   207    3e-52
gi|336179756|ref|YP_004585131.1|  30S ribosomal protein S11 [Fran...   207    5e-52
gi|295838430|ref|ZP_06825363.1|  30S ribosomal protein S11 [Strep...   203    8e-51
gi|284992848|ref|YP_003411402.1|  30S ribosomal protein S11 [Geod...   202    1e-50
gi|302543335|ref|ZP_07295677.1|  30S ribosomal protein S11 [Strep...   202    2e-50
gi|29831495|ref|NP_826129.1|  30S ribosomal protein S11 [Streptom...   202    2e-50
gi|337767602|emb|CCB76313.1|  ribosomal protein S11 (BS11) [Strep...   202    2e-50
gi|21223107|ref|NP_628886.1|  30S ribosomal protein S11 [Streptom...   202    2e-50
gi|563204|gb|AAB17599.1|  ribosomal protein S11 [Mycobacterium bo...   201    2e-50
gi|324999250|ref|ZP_08120362.1|  30S ribosomal protein S11 [Pseud...   201    4e-50
gi|258651410|ref|YP_003200566.1|  30S ribosomal protein S11 [Naka...   200    6e-50
gi|333026538|ref|ZP_08454602.1|  putative 30S ribosomal protein S...   199    1e-49
gi|271962662|ref|YP_003336858.1|  30S ribosomal protein S11 [Stre...   199    1e-49
gi|269955461|ref|YP_003325250.1|  30S ribosomal protein S11 [Xyla...   199    1e-49
gi|331699147|ref|YP_004335386.1|  30S ribosomal protein S11 [Pseu...   198    2e-49
gi|300782637|ref|YP_003762928.1|  30S ribosomal protein S11 [Amyc...   197    3e-49
gi|334336212|ref|YP_004541364.1|  30S ribosomal protein S11 [Isop...   197    4e-49
gi|269128487|ref|YP_003301857.1|  30S ribosomal protein S11 [Ther...   197    6e-49
gi|302524020|ref|ZP_07276362.1|  30S ribosomal protein S11 [Strep...   196    1e-48
gi|329945756|ref|ZP_08293443.1|  30S ribosomal protein S11 [Actin...   195    2e-48


>gi|15610595|ref|NP_217976.1| 30S ribosomal protein S11 [Mycobacterium tuberculosis H37Rv]
 gi|15843054|ref|NP_338091.1| 30S ribosomal protein S11 [Mycobacterium tuberculosis CDC1551]
 gi|148663324|ref|YP_001284847.1| 30S ribosomal protein S11 [Mycobacterium tuberculosis H37Ra]
 60 more sequence titles
 Length=139

 Score =  278 bits (711),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV
Sbjct  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNGVRPPKRRRV
Sbjct  121  SDVTPQPHNGVRPPKRRRV  139


>gi|31794635|ref|NP_857128.1| 30S ribosomal protein S11 [Mycobacterium bovis AF2122/97]
 gi|121639379|ref|YP_979603.1| 30S ribosomal protein S11 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224991875|ref|YP_002646564.1| 30S ribosomal protein S11 [Mycobacterium bovis BCG str. Tokyo 
172]
 13 more sequence titles
 Length=139

 Score =  276 bits (706),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV
Sbjct  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNGVRPP RRRV
Sbjct  121  SDVTPQPHNGVRPPNRRRV  139


>gi|289759622|ref|ZP_06519000.1| LOW QUALITY PROTEIN: 30S ribosomal protein S11 [Mycobacterium 
tuberculosis T85]
 gi|289715186|gb|EFD79198.1| LOW QUALITY PROTEIN: 30S ribosomal protein S11 [Mycobacterium 
tuberculosis T85]
Length=126

 Score =  252 bits (644),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 125/126 (99%), Positives = 126/126 (100%), Gaps = 0/126 (0%)

Query  14   KGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAA  73
            +GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAA
Sbjct  1    EGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAA  60

Query  74   QLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRP  133
            QLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRP
Sbjct  61   QLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRP  120

Query  134  PKRRRV  139
            PKRRRV
Sbjct  121  PKRRRV  126


>gi|240167781|ref|ZP_04746440.1| 30S ribosomal protein S11 [Mycobacterium kansasii ATCC 12478]
Length=142

 Score =  240 bits (613),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 133/142 (94%), Positives = 135/142 (96%), Gaps = 3/142 (2%)

Query  1    MPPAKK---GPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASS  57
            MPPAKK   G A   +KGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASS
Sbjct  1    MPPAKKTASGAAKKGQKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASS  60

Query  58   GHVGFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEV  117
            GHVGFKGSRKSTPFAAQLAAENAARKAQ+HGVRKVDVFVKGPGSGRETAIRSLQAAGLEV
Sbjct  61   GHVGFKGSRKSTPFAAQLAAENAARKAQEHGVRKVDVFVKGPGSGRETAIRSLQAAGLEV  120

Query  118  GAISDVTPQPHNGVRPPKRRRV  139
            GAISDVTPQPHNGVRPPKRRRV
Sbjct  121  GAISDVTPQPHNGVRPPKRRRV  142


>gi|118616623|ref|YP_904955.1| 30S ribosomal protein S11 [Mycobacterium ulcerans Agy99]
 gi|183981108|ref|YP_001849399.1| 30S ribosomal protein S11, RpsK [Mycobacterium marinum M]
 gi|152060798|sp|A0PMB5.1|RS11_MYCUA RecName: Full=30S ribosomal protein S11
 gi|226708390|sp|B2HCX2.1|RS11_MYCMM RecName: Full=30S ribosomal protein S11
 gi|118568733|gb|ABL03484.1| 30S ribosomal protein S11, RpsK [Mycobacterium ulcerans Agy99]
 gi|183174434|gb|ACC39544.1| 30S ribosomal protein S11, RpsK [Mycobacterium marinum M]
Length=138

 Score =  237 bits (605),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 131/139 (95%), Positives = 133/139 (96%), Gaps = 1/139 (0%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP KK   T  +KGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV
Sbjct  1    MPP-KKASGTGPKKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  59

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct  60   GFKGSRKSTPFAAQLAAENAARKAQEHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  119

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNGVRPPKRRRV
Sbjct  120  SDVTPQPHNGVRPPKRRRV  138


>gi|118467427|ref|YP_885904.1| 30S ribosomal protein S11 [Mycobacterium smegmatis str. MC2 155]
 gi|152060795|sp|A0QSL6.1|RS11_MYCS2 RecName: Full=30S ribosomal protein S11
 gi|118168714|gb|ABK69610.1| ribosomal protein S11 [Mycobacterium smegmatis str. MC2 155]
Length=138

 Score =  234 bits (597),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 128/139 (93%), Positives = 133/139 (96%), Gaps = 1/139 (0%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            M  AKKG  T+A+KGQKTRRREKKNVPHGAAHIKSTFNNTIV+ITDPQGNVIAWASSGHV
Sbjct  1    MAQAKKG-GTAAKKGQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHV  59

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  60   GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI  119

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  120  SDVTPQPHNGCRPPKRRRV  138


>gi|333991922|ref|YP_004524536.1| 30S ribosomal protein S11 RpsK [Mycobacterium sp. JDM601]
 gi|333487890|gb|AEF37282.1| 30S ribosomal protein S11 RpsK [Mycobacterium sp. JDM601]
Length=136

 Score =  232 bits (591),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 125/131 (96%), Positives = 128/131 (98%), Gaps = 0/131 (0%)

Query  9    ATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKS  68
            AT  +KGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKS
Sbjct  6    ATGPKKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKS  65

Query  69   TPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPH  128
            TPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPH
Sbjct  66   TPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPH  125

Query  129  NGVRPPKRRRV  139
            NG RPPKRRRV
Sbjct  126  NGCRPPKRRRV  136


>gi|120402445|ref|YP_952274.1| 30S ribosomal protein S11 [Mycobacterium vanbaalenii PYR-1]
 gi|152060799|sp|A1T518.1|RS11_MYCVP RecName: Full=30S ribosomal protein S11
 gi|119955263|gb|ABM12268.1| SSU ribosomal protein S11P [Mycobacterium vanbaalenii PYR-1]
Length=137

 Score =  231 bits (588),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 128/139 (93%), Positives = 132/139 (95%), Gaps = 2/139 (1%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            M  AKKG A   +KGQKTRRREKKNVPHGAAHIKSTFNNTIV+ITDPQGNVIAWASSGHV
Sbjct  1    MAQAKKGGA--PKKGQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHV  58

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct  59   GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  118

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  119  SDVTPQPHNGCRPPKRRRV  137


>gi|41410329|ref|NP_963165.1| 30S ribosomal protein S11 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118462594|ref|YP_883535.1| 30S ribosomal protein S11 [Mycobacterium avium 104]
 gi|254776832|ref|ZP_05218348.1| 30S ribosomal protein S11 [Mycobacterium avium subsp. avium ATCC 
25291]
 gi|59798796|sp|Q73S45.1|RS11_MYCPA RecName: Full=30S ribosomal protein S11
 gi|152060793|sp|A0QKU7.1|RS11_MYCA1 RecName: Full=30S ribosomal protein S11
 gi|41399163|gb|AAS06781.1| RpsK [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118163881|gb|ABK64778.1| ribosomal protein S11 [Mycobacterium avium 104]
Length=138

 Score =  229 bits (584),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 124/125 (99%), Positives = 125/125 (100%), Gaps = 0/125 (0%)

Query  15   GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ  74
            GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ
Sbjct  14   GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ  73

Query  75   LAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP  134
            LAAENAARKAQ+HGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP
Sbjct  74   LAAENAARKAQEHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP  133

Query  135  KRRRV  139
            KRRRV
Sbjct  134  KRRRV  138


>gi|145225548|ref|YP_001136226.1| 30S ribosomal protein S11 [Mycobacterium gilvum PYR-GCK]
 gi|315445900|ref|YP_004078779.1| 30S ribosomal protein S11P [Mycobacterium sp. Spyr1]
 gi|189040422|sp|A4TEI1.1|RS11_MYCGI RecName: Full=30S ribosomal protein S11
 gi|145218034|gb|ABP47438.1| SSU ribosomal protein S11P [Mycobacterium gilvum PYR-GCK]
 gi|315264203|gb|ADU00945.1| SSU ribosomal protein S11P [Mycobacterium sp. Spyr1]
Length=136

 Score =  229 bits (584),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 126/139 (91%), Positives = 132/139 (95%), Gaps = 3/139 (2%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            M  AKKG   + +KGQKTRRREKKNVPHGAAHIKSTFNNTIV+ITDPQGNVIAWASSGHV
Sbjct  1    MAQAKKG---APKKGQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHV  57

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct  58   GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  117

Query  121  SDVTPQPHNGVRPPKRRRV  139
            +DVTPQPHNG RPPKRRRV
Sbjct  118  ADVTPQPHNGCRPPKRRRV  136


>gi|342861867|ref|ZP_08718512.1| 30S ribosomal protein S11 [Mycobacterium colombiense CECT 3035]
 gi|342130684|gb|EGT83988.1| 30S ribosomal protein S11 [Mycobacterium colombiense CECT 3035]
Length=138

 Score =  228 bits (581),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 123/125 (99%), Positives = 125/125 (100%), Gaps = 0/125 (0%)

Query  15   GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ  74
            GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ
Sbjct  14   GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ  73

Query  75   LAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP  134
            LAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP
Sbjct  74   LAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP  133

Query  135  KRRRV  139
            KRRRV
Sbjct  134  KRRRV  138


>gi|254819219|ref|ZP_05224220.1| 30S ribosomal protein S11 [Mycobacterium intracellulare ATCC 
13950]
Length=138

 Score =  228 bits (581),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 123/125 (99%), Positives = 125/125 (100%), Gaps = 0/125 (0%)

Query  15   GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ  74
            GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ
Sbjct  14   GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ  73

Query  75   LAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP  134
            LAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP
Sbjct  74   LAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP  133

Query  135  KRRRV  139
            KRRRV
Sbjct  134  KRRRV  138


>gi|15828061|ref|NP_302324.1| 30S ribosomal protein S11 [Mycobacterium leprae TN]
 gi|221230538|ref|YP_002503954.1| 30S ribosomal protein S11 [Mycobacterium leprae Br4923]
 gi|7388114|sp|Q9X7A0.1|RS11_MYCLE RecName: Full=30S ribosomal protein S11
 gi|254811035|sp|B8ZSH8.1|RS11_MYCLB RecName: Full=30S ribosomal protein S11
 gi|4539114|emb|CAB39835.1| putative 30S ribosomal protein S11 [Mycobacterium leprae]
 gi|13093614|emb|CAC30914.1| 30S ribosomal protein S11 [Mycobacterium leprae]
 gi|219933645|emb|CAR72056.1| 30S ribosomal protein S11 [Mycobacterium leprae Br4923]
Length=138

 Score =  228 bits (580),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 125/139 (90%), Positives = 130/139 (94%), Gaps = 1/139 (0%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP KK  A   +KGQKTR+REKKN+P+GAAHIKSTFNNTIVTITD QGNVIAWASSGHV
Sbjct  1    MPP-KKANAAGPKKGQKTRKREKKNIPYGAAHIKSTFNNTIVTITDQQGNVIAWASSGHV  59

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HGVRKVDVFV GPGSGRETAIRSLQAAGLEVGAI
Sbjct  60   GFKGSRKSTPFAAQLAAENAARKAQEHGVRKVDVFVMGPGSGRETAIRSLQAAGLEVGAI  119

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  120  SDVTPQPHNGCRPPKRRRV  138


>gi|169630851|ref|YP_001704500.1| 30S ribosomal protein S11 [Mycobacterium abscessus ATCC 19977]
 gi|226708389|sp|B1MGA1.1|RS11_MYCA9 RecName: Full=30S ribosomal protein S11
 gi|169242818|emb|CAM63846.1| 30S ribosomal protein S11 [Mycobacterium abscessus]
Length=138

 Score =  227 bits (579),  Expect = 4e-58, Method: Compositional matrix adjust.
 Identities = 125/139 (90%), Positives = 130/139 (94%), Gaps = 1/139 (0%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            M P K G A   +K QKTRRREKKNVPHGAAHIKSTFNNTIV+ITDPQGNVI+WASSGHV
Sbjct  1    MAPKKPG-AAGPKKAQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVISWASSGHV  59

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct  60   GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  119

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  120  SDVTPQPHNGCRPPKRRRV  138


>gi|336460706|gb|EGO39596.1| 30S ribosomal protein S11 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=138

 Score =  227 bits (578),  Expect = 6e-58, Method: Compositional matrix adjust.
 Identities = 123/125 (99%), Positives = 124/125 (99%), Gaps = 0/125 (0%)

Query  15   GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ  74
            GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ
Sbjct  14   GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ  73

Query  75   LAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP  134
            LAAENAARKAQ+HGVRKVDVFVKGPGSGRETAIRSLQAAGLEV AISDVTPQPHNGVRPP
Sbjct  74   LAAENAARKAQEHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVDAISDVTPQPHNGVRPP  133

Query  135  KRRRV  139
            KRRRV
Sbjct  134  KRRRV  138


>gi|333918172|ref|YP_004491753.1| 30S ribosomal protein S11 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333480393|gb|AEF38953.1| 30S ribosomal protein S11 [Amycolicicoccus subflavus DQS3-9A1]
Length=137

 Score =  225 bits (573),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 122/139 (88%), Positives = 129/139 (93%), Gaps = 2/139 (1%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  K  AT  +KGQK+RRREKKN+ HG AHIKSTFNNTIV+ITDPQGNVI+WASSGHV
Sbjct  1    MPP--KSRATGGKKGQKSRRREKKNIAHGHAHIKSTFNNTIVSITDPQGNVISWASSGHV  58

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQDHG++KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  59   GFKGSRKSTPFAAQLAAENAARKAQDHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI  118

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  119  SDVTPQPHNGCRPPKRRRV  137


>gi|296168683|ref|ZP_06850432.1| 30S ribosomal protein S11 [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295896592|gb|EFG76233.1| 30S ribosomal protein S11 [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=138

 Score =  224 bits (571),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 119/125 (96%), Positives = 124/125 (99%), Gaps = 0/125 (0%)

Query  15   GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ  74
            GQKTR+REKKN+PHGAAHIKSTFNNTIV+ITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ
Sbjct  14   GQKTRKREKKNIPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ  73

Query  75   LAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP  134
            LAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNG RPP
Sbjct  74   LAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGCRPP  133

Query  135  KRRRV  139
            KRRRV
Sbjct  134  KRRRV  138


>gi|108798083|ref|YP_638280.1| 30S ribosomal protein S11 [Mycobacterium sp. MCS]
 gi|119867179|ref|YP_937131.1| 30S ribosomal protein S11 [Mycobacterium sp. KMS]
 gi|126433743|ref|YP_001069434.1| 30S ribosomal protein S11 [Mycobacterium sp. JLS]
 6 more sequence titles
 Length=138

 Score =  224 bits (570),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 128/139 (93%), Positives = 134/139 (97%), Gaps = 1/139 (0%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP K   A+SA+KGQKTRRREKKNVPHGAAHIKSTFNNTIV+ITDPQGNVIAWASSGHV
Sbjct  1    MPPKKAA-ASSAKKGQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHV  59

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct  60   GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  119

Query  121  SDVTPQPHNGVRPPKRRRV  139
            +DVTPQPHNG RPPKRRRV
Sbjct  120  ADVTPQPHNGCRPPKRRRV  138


>gi|226305368|ref|YP_002765326.1| 30S ribosomal protein S11 [Rhodococcus erythropolis PR4]
 gi|229489326|ref|ZP_04383189.1| 30S ribosomal protein S11 [Rhodococcus erythropolis SK121]
 gi|259494632|sp|C0ZW52.1|RS11_RHOE4 RecName: Full=30S ribosomal protein S11
 gi|226184483|dbj|BAH32587.1| 30S ribosomal protein S11 [Rhodococcus erythropolis PR4]
 gi|229323423|gb|EEN89181.1| 30S ribosomal protein S11 [Rhodococcus erythropolis SK121]
Length=137

 Score =  222 bits (565),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 120/139 (87%), Positives = 129/139 (93%), Gaps = 2/139 (1%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  K  +T  +K QKTRRR+KKN+PHGAAHIKSTFNNTIV+ITDP GNVI+WASSGHV
Sbjct  1    MPP--KSRSTGPKKTQKTRRRDKKNIPHGAAHIKSTFNNTIVSITDPAGNVISWASSGHV  58

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAE+AARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  59   GFKGSRKSTPFAAQLAAESAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI  118

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  119  SDVTPQPHNGCRPPKRRRV  137


>gi|111023123|ref|YP_706095.1| 30S ribosomal protein S11 [Rhodococcus jostii RHA1]
 gi|123339769|sp|Q0S3E9.1|RS11_RHOSR RecName: Full=30S ribosomal protein S11
 gi|110822653|gb|ABG97937.1| 30S ribosomal protein S11 [Rhodococcus jostii RHA1]
Length=137

 Score =  222 bits (565),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 121/139 (88%), Positives = 128/139 (93%), Gaps = 2/139 (1%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  +G  T  +K QK RRR+KKNVPHGAAHIKSTFNNTIV+ITDP GNVI+WASSGHV
Sbjct  1    MPPKSRG--TGPKKTQKARRRDKKNVPHGAAHIKSTFNNTIVSITDPAGNVISWASSGHV  58

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  59   GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI  118

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  119  SDVTPQPHNGCRPPKRRRV  137


>gi|226365622|ref|YP_002783405.1| 30S ribosomal protein S11 [Rhodococcus opacus B4]
 gi|312140891|ref|YP_004008227.1| 30S ribosomal protein s11 rpsk [Rhodococcus equi 103S]
 gi|325675471|ref|ZP_08155155.1| 30S ribosomal protein S11 [Rhodococcus equi ATCC 33707]
 gi|254811039|sp|C1B039.1|RS11_RHOOB RecName: Full=30S ribosomal protein S11
 gi|226244112|dbj|BAH54460.1| 30S ribosomal protein S11 [Rhodococcus opacus B4]
 gi|311890230|emb|CBH49548.1| 30S ribosomal protein S11 RpsK [Rhodococcus equi 103S]
 gi|325553442|gb|EGD23120.1| 30S ribosomal protein S11 [Rhodococcus equi ATCC 33707]
Length=137

 Score =  221 bits (562),  Expect = 4e-56, Method: Compositional matrix adjust.
 Identities = 121/139 (88%), Positives = 128/139 (93%), Gaps = 2/139 (1%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  K  +T  +K QK RRR+KKNVPHGAAHIKSTFNNTIV+ITDP GNVI+WASSGHV
Sbjct  1    MPP--KSRSTGPKKTQKARRRDKKNVPHGAAHIKSTFNNTIVSITDPAGNVISWASSGHV  58

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  59   GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI  118

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  119  SDVTPQPHNGCRPPKRRRV  137


>gi|54022802|ref|YP_117044.1| 30S ribosomal protein S11 [Nocardia farcinica IFM 10152]
 gi|59798618|sp|Q5Z1L1.1|RS11_NOCFA RecName: Full=30S ribosomal protein S11
 gi|54014310|dbj|BAD55680.1| putative ribosomal protein S11 [Nocardia farcinica IFM 10152]
Length=137

 Score =  219 bits (559),  Expect = 9e-56, Method: Compositional matrix adjust.
 Identities = 120/139 (87%), Positives = 128/139 (93%), Gaps = 2/139 (1%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  K  A+  +K QK+RRR+KKNVPHG AHIKSTFNNTIV+ITDP GNVI+WASSGHV
Sbjct  1    MPP--KSRASGPKKTQKSRRRDKKNVPHGNAHIKSTFNNTIVSITDPNGNVISWASSGHV  58

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  59   GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI  118

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  119  SDVTPQPHNGCRPPKRRRV  137


>gi|296141064|ref|YP_003648307.1| 30S ribosomal protein S11 [Tsukamurella paurometabola DSM 20162]
 gi|296029198|gb|ADG79968.1| 30S ribosomal protein S11 [Tsukamurella paurometabola DSM 20162]
Length=137

 Score =  214 bits (544),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 119/139 (86%), Positives = 128/139 (93%), Gaps = 2/139 (1%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  +  A+ A+KG  +RRREKKNVPHG AHIKSTFNNTIV+ITDP GNVI+WASSGHV
Sbjct  1    MPPKSRA-ASGAKKGA-SRRREKKNVPHGHAHIKSTFNNTIVSITDPAGNVISWASSGHV  58

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ++GV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  59   GFKGSRKSTPFAAQLAAENAARKAQENGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI  118

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  119  SDVTPQPHNGCRPPKRRRV  137


>gi|317505827|ref|ZP_07963672.1| 30S ribosomal protein S11 [Segniliparus rugosus ATCC BAA-974]
 gi|316255909|gb|EFV15134.1| 30S ribosomal protein S11 [Segniliparus rugosus ATCC BAA-974]
Length=134

 Score =  214 bits (544),  Expect = 5e-54, Method: Compositional matrix adjust.
 Identities = 117/139 (85%), Positives = 125/139 (90%), Gaps = 5/139 (3%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  +         +K RRREKKNVP+GAAHIKSTFNNTIV+ITDP+GNVIAWASSGHV
Sbjct  1    MPPKNRAAGV-----KKVRRREKKNVPNGAAHIKSTFNNTIVSITDPEGNVIAWASSGHV  55

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HG++KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  56   GFKGSRKSTPFAAQLAAENAARKAQEHGLKKVDVFVKGPGSGRETAIRSLQAAGLEVGNI  115

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  116  SDVTPQPHNGCRPPKRRRV  134


>gi|296394892|ref|YP_003659776.1| 30S ribosomal protein S11 [Segniliparus rotundus DSM 44985]
 gi|296182039|gb|ADG98945.1| 30S ribosomal protein S11 [Segniliparus rotundus DSM 44985]
Length=134

 Score =  213 bits (542),  Expect = 7e-54, Method: Compositional matrix adjust.
 Identities = 116/139 (84%), Positives = 125/139 (90%), Gaps = 5/139 (3%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  +         +K RRREKKN+P+GAAHIKSTFNNTIV+ITDP+GNVIAWASSGHV
Sbjct  1    MPPKNRAAGV-----KKVRRREKKNIPNGAAHIKSTFNNTIVSITDPEGNVIAWASSGHV  55

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HG++KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  56   GFKGSRKSTPFAAQLAAENAARKAQEHGLKKVDVFVKGPGSGRETAIRSLQAAGLEVGNI  115

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  116  SDVTPQPHNGCRPPKRRRV  134


>gi|343927696|ref|ZP_08767164.1| 30S ribosomal protein S11 [Gordonia alkanivorans NBRC 16433]
 gi|343762337|dbj|GAA14090.1| 30S ribosomal protein S11 [Gordonia alkanivorans NBRC 16433]
Length=135

 Score =  211 bits (536),  Expect = 4e-53, Method: Compositional matrix adjust.
 Identities = 116/139 (84%), Positives = 125/139 (90%), Gaps = 4/139 (2%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  +    SA   + TRRR+KKNVPHG AHIKSTFNNTIV+I+DP GN+I+WASSGHV
Sbjct  1    MPPKSR----SAGPKKGTRRRDKKNVPHGHAHIKSTFNNTIVSISDPSGNIISWASSGHV  56

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  57   GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI  116

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  117  SDVTPQPHNGCRPPKRRRV  135


>gi|88854651|ref|ZP_01129317.1| 30S ribosomal protein S11 [marine actinobacterium PHSC20C1]
 gi|88815812|gb|EAR25668.1| 30S ribosomal protein S11 [marine actinobacterium PHSC20C1]
Length=132

 Score =  211 bits (536),  Expect = 4e-53, Method: Compositional matrix adjust.
 Identities = 105/132 (80%), Positives = 119/132 (91%), Gaps = 3/132 (2%)

Query  8    PATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRK  67
            P ++ARK    RR+EKKNV  G AHIKSTFNNTIVTITDP G V+AW+SSG VGFKGSRK
Sbjct  4    PKSAARK---PRRKEKKNVAVGQAHIKSTFNNTIVTITDPTGAVLAWSSSGVVGFKGSRK  60

Query  68   STPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQP  127
            STP+AAQ++AE+AAR+AQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG+I+DVTPQ 
Sbjct  61   STPYAAQMSAESAARQAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGSINDVTPQT  120

Query  128  HNGVRPPKRRRV  139
            HNG RPPKRRRV
Sbjct  121  HNGCRPPKRRRV  132


>gi|262203542|ref|YP_003274750.1| 30S ribosomal protein S11 [Gordonia bronchialis DSM 43247]
 gi|262086889|gb|ACY22857.1| 30S ribosomal protein S11 [Gordonia bronchialis DSM 43247]
Length=135

 Score =  210 bits (535),  Expect = 6e-53, Method: Compositional matrix adjust.
 Identities = 116/139 (84%), Positives = 124/139 (90%), Gaps = 4/139 (2%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  +    SA   +  RRR+KKNVPHG AHIKSTFNNTIV+I+DP GNVI+WASSGHV
Sbjct  1    MPPKSR----SAGPKKGARRRDKKNVPHGTAHIKSTFNNTIVSISDPNGNVISWASSGHV  56

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  57   GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI  116

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  117  SDVTPQPHNGCRPPKRRRV  135


>gi|86739321|ref|YP_479721.1| 30S ribosomal protein S11 [Frankia sp. CcI3]
 gi|123751488|sp|Q2JFF0.1|RS11_FRASC RecName: Full=30S ribosomal protein S11
 gi|86566183|gb|ABD09992.1| SSU ribosomal protein S11P [Frankia sp. CcI3]
Length=134

 Score =  208 bits (530),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 112/132 (85%), Positives = 120/132 (91%), Gaps = 0/132 (0%)

Query  8    PATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRK  67
            P T A   +K RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHVGFKGSRK
Sbjct  3    PKTRAAGAKKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPSGNVISWASAGHVGFKGSRK  62

Query  68   STPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQP  127
            STPFAAQ+AAENAARKAQ+HG+RKVDVFVKGPGSGRETAIRSLQAAGLEVGAI DVTP P
Sbjct  63   STPFAAQMAAENAARKAQEHGMRKVDVFVKGPGSGRETAIRSLQAAGLEVGAIQDVTPTP  122

Query  128  HNGVRPPKRRRV  139
            HNG RPPKRRRV
Sbjct  123  HNGCRPPKRRRV  134


>gi|111220572|ref|YP_711366.1| 30S ribosomal protein S11 [Frankia alni ACN14a]
 gi|123143522|sp|Q0RRP5.1|RS11_FRAAA RecName: Full=30S ribosomal protein S11
 gi|111148104|emb|CAJ59772.1| 30S ribosomal subunit protein S11 [Frankia alni ACN14a]
Length=134

 Score =  208 bits (529),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 112/132 (85%), Positives = 120/132 (91%), Gaps = 0/132 (0%)

Query  8    PATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRK  67
            P T A   +K RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHVGFKGSRK
Sbjct  3    PKTRAAGAKKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGNVISWASAGHVGFKGSRK  62

Query  68   STPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQP  127
            STPFAAQ+AAENAARKAQ+HG+RKVDVFVKGPGSGRETAIRSLQAAGLEVGAI DVTP P
Sbjct  63   STPFAAQMAAENAARKAQEHGMRKVDVFVKGPGSGRETAIRSLQAAGLEVGAIQDVTPTP  122

Query  128  HNGVRPPKRRRV  139
            HNG RPPKRRRV
Sbjct  123  HNGCRPPKRRRV  134


>gi|326383230|ref|ZP_08204918.1| 30S ribosomal protein S11 [Gordonia neofelifaecis NRRL B-59395]
 gi|326197980|gb|EGD55166.1| 30S ribosomal protein S11 [Gordonia neofelifaecis NRRL B-59395]
Length=135

 Score =  207 bits (528),  Expect = 3e-52, Method: Compositional matrix adjust.
 Identities = 116/139 (84%), Positives = 125/139 (90%), Gaps = 4/139 (2%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  +    SA   + TRRR+KKNVP G AHIKSTFNNTIV+ITDP+GNVI+WASSGHV
Sbjct  1    MPPKSR----SAGPKKGTRRRDKKNVPLGHAHIKSTFNNTIVSITDPEGNVISWASSGHV  56

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAENAARKAQ++GV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  57   GFKGSRKSTPFAAQLAAENAARKAQENGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI  116

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  117  SDVTPQPHNGCRPPKRRRV  135


>gi|336179756|ref|YP_004585131.1| 30S ribosomal protein S11 [Frankia symbiont of Datisca glomerata]
 gi|334860736|gb|AEH11210.1| 30S ribosomal protein S11 [Frankia symbiont of Datisca glomerata]
Length=134

 Score =  207 bits (526),  Expect = 5e-52, Method: Compositional matrix adjust.
 Identities = 112/132 (85%), Positives = 120/132 (91%), Gaps = 0/132 (0%)

Query  8    PATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRK  67
            P T A   +K RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHVGFKGSRK
Sbjct  3    PKTRAAGIKKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPSGNVISWASAGHVGFKGSRK  62

Query  68   STPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQP  127
            STPFAAQ+AAENAARKAQ+HG+RKVDVFVKGPGSGRETAIRSLQAAGLEVGAI DVTP P
Sbjct  63   STPFAAQMAAENAARKAQEHGMRKVDVFVKGPGSGRETAIRSLQAAGLEVGAIQDVTPTP  122

Query  128  HNGVRPPKRRRV  139
            HNG RPPKRRRV
Sbjct  123  HNGCRPPKRRRV  134


>gi|295838430|ref|ZP_06825363.1| 30S ribosomal protein S11 [Streptomyces sp. SPB74]
 gi|302519633|ref|ZP_07271975.1| 30S ribosomal protein S11 [Streptomyces sp. SPB78]
 gi|318058102|ref|ZP_07976825.1| 30S ribosomal protein S11 [Streptomyces sp. SA3_actG]
 gi|318076045|ref|ZP_07983377.1| 30S ribosomal protein S11 [Streptomyces sp. SA3_actF]
 gi|197695772|gb|EDY42705.1| 30S ribosomal protein S11 [Streptomyces sp. SPB74]
 gi|302428528|gb|EFL00344.1| 30S ribosomal protein S11 [Streptomyces sp. SPB78]
Length=134

 Score =  203 bits (516),  Expect = 8e-51, Method: Compositional matrix adjust.
 Identities = 109/139 (79%), Positives = 122/139 (88%), Gaps = 5/139 (3%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  +  AT     +K RR+EKKNV HG AHIKSTFNNTI++ITDP GNVI+WAS+GHV
Sbjct  1    MPPKGRQGAT-----KKVRRKEKKNVAHGHAHIKSTFNNTIISITDPTGNVISWASAGHV  55

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQ+AAE+AAR+AQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct  56   GFKGSRKSTPFAAQMAAESAARRAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSI  115

Query  121  SDVTPQPHNGVRPPKRRRV  139
             DVTP PHNG RPPKRRRV
Sbjct  116  QDVTPTPHNGCRPPKRRRV  134


>gi|284992848|ref|YP_003411402.1| 30S ribosomal protein S11 [Geodermatophilus obscurus DSM 43160]
 gi|284066093|gb|ADB77031.1| 30S ribosomal protein S11 [Geodermatophilus obscurus DSM 43160]
Length=135

 Score =  202 bits (515),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 107/121 (89%), Positives = 114/121 (95%), Gaps = 0/121 (0%)

Query  19   RRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAE  78
            RR+EKKNV HGAAHIKSTFNNTIV+ITDP GNVI+WAS+GHVGFKGSRKSTPFAAQ+AAE
Sbjct  15   RRKEKKNVAHGAAHIKSTFNNTIVSITDPTGNVISWASAGHVGFKGSRKSTPFAAQMAAE  74

Query  79   NAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPKRRR  138
            NAARKAQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG I DVTPQPHNG RP KRRR
Sbjct  75   NAARKAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGQIQDVTPQPHNGCRPKKRRR  134

Query  139  V  139
            V
Sbjct  135  V  135


>gi|302543335|ref|ZP_07295677.1| 30S ribosomal protein S11 [Streptomyces hygroscopicus ATCC 53653]
 gi|345008596|ref|YP_004810950.1| 30S ribosomal protein S11 [Streptomyces violaceusniger Tu 4113]
 gi|297159623|gb|ADI09335.1| 30S ribosomal protein S11 [Streptomyces bingchenggensis BCW-1]
 gi|302460953|gb|EFL24046.1| 30S ribosomal protein S11 [Streptomyces himastatinicus ATCC 53653]
 gi|344034945|gb|AEM80670.1| 30S ribosomal protein S11 [Streptomyces violaceusniger Tu 4113]
Length=134

 Score =  202 bits (513),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 105/124 (85%), Positives = 116/124 (94%), Gaps = 0/124 (0%)

Query  16   QKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQL  75
            +K RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHVGFKGSRKSTPFAAQ+
Sbjct  11   KKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGNVISWASAGHVGFKGSRKSTPFAAQM  70

Query  76   AAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPK  135
            AAE+AAR+AQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I DVTP PHNG RPPK
Sbjct  71   AAESAARRAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSIQDVTPTPHNGCRPPK  130

Query  136  RRRV  139
            RRRV
Sbjct  131  RRRV  134


>gi|29831495|ref|NP_826129.1| 30S ribosomal protein S11 [Streptomyces avermitilis MA-4680]
 gi|182436601|ref|YP_001824320.1| 30S ribosomal protein S11 [Streptomyces griseus subsp. griseus 
NBRC 13350]
 gi|239990056|ref|ZP_04710720.1| 30S ribosomal protein S11 [Streptomyces roseosporus NRRL 11379]
 33 more sequence titles
 Length=134

 Score =  202 bits (513),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 111/139 (80%), Positives = 123/139 (89%), Gaps = 5/139 (3%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  KG   +A+K    RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHV
Sbjct  1    MPP--KGRQGAAKK---VRRKEKKNVAHGHAHIKSTFNNTIVSITDPSGNVISWASAGHV  55

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQ+AAE+AAR+AQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct  56   GFKGSRKSTPFAAQMAAESAARRAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSI  115

Query  121  SDVTPQPHNGVRPPKRRRV  139
             DVTP PHNG RPPKRRRV
Sbjct  116  QDVTPTPHNGCRPPKRRRV  134


>gi|337767602|emb|CCB76313.1| ribosomal protein S11 (BS11) [Streptomyces cattleya NRRL 8057]
Length=134

 Score =  202 bits (513),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 111/139 (80%), Positives = 122/139 (88%), Gaps = 5/139 (3%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  KG    A+K    RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHV
Sbjct  1    MPP--KGRQAGAKK---VRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGNVISWASAGHV  55

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQ+AAE+AAR+AQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct  56   GFKGSRKSTPFAAQMAAESAARRAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSI  115

Query  121  SDVTPQPHNGVRPPKRRRV  139
             DVTP PHNG RPPKRRRV
Sbjct  116  QDVTPTPHNGCRPPKRRRV  134


>gi|21223107|ref|NP_628886.1| 30S ribosomal protein S11 [Streptomyces coelicolor A3(2)]
 gi|289769689|ref|ZP_06529067.1| 30S ribosomal protein S11 [Streptomyces lividans TK24]
 gi|291451887|ref|ZP_06591277.1| 30S ribosomal protein S11 [Streptomyces albus J1074]
 8 more sequence titles
 Length=134

 Score =  202 bits (513),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 111/139 (80%), Positives = 123/139 (89%), Gaps = 5/139 (3%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  KG   +A+K    RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHV
Sbjct  1    MPP--KGRQGAAKK---VRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGNVISWASAGHV  55

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQ+AAE+AAR+AQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct  56   GFKGSRKSTPFAAQMAAESAARRAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSI  115

Query  121  SDVTPQPHNGVRPPKRRRV  139
             DVTP PHNG RPPKRRRV
Sbjct  116  QDVTPTPHNGCRPPKRRRV  134


>gi|563204|gb|AAB17599.1| ribosomal protein S11 [Mycobacterium bovis]
 gi|1589488|prf||2211287E ribosomal protein S11
Length=140

 Score =  201 bits (512),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 101/104 (98%), Positives = 101/104 (98%), Gaps = 0/104 (0%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVI WASSGHV
Sbjct  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIGWASSGHV  60

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRE  104
             FKGSRKSTPFAAQLAAEN ARKAQDHGVRKVDVFVKGPGSGRE
Sbjct  61   VFKGSRKSTPFAAQLAAENPARKAQDHGVRKVDVFVKGPGSGRE  104


>gi|324999250|ref|ZP_08120362.1| 30S ribosomal protein S11 [Pseudonocardia sp. P1]
Length=135

 Score =  201 bits (510),  Expect = 4e-50, Method: Compositional matrix adjust.
 Identities = 114/142 (81%), Positives = 121/142 (86%), Gaps = 10/142 (7%)

Query  1    MPPAKKGPATSARKG---QKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASS  57
            MPP        AR+G   +K RRREKKNV HG AHIKSTFNNTIV+ITDP G VIAWASS
Sbjct  1    MPP-------RARQGTGPKKVRRREKKNVAHGHAHIKSTFNNTIVSITDPTGAVIAWASS  53

Query  58   GHVGFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEV  117
            GHVG KGSRKSTPFAAQLAAENAARKA +HG++K DVFVKGPGSGRETAIRSLQAAGLEV
Sbjct  54   GHVGLKGSRKSTPFAAQLAAENAARKAMEHGMKKCDVFVKGPGSGRETAIRSLQAAGLEV  113

Query  118  GAISDVTPQPHNGVRPPKRRRV  139
            G I+DVTPQPHNG RPPKRRRV
Sbjct  114  GTINDVTPQPHNGCRPPKRRRV  135


>gi|258651410|ref|YP_003200566.1| 30S ribosomal protein S11 [Nakamurella multipartita DSM 44233]
 gi|258554635|gb|ACV77577.1| ribosomal protein S11 [Nakamurella multipartita DSM 44233]
Length=136

 Score =  200 bits (508),  Expect = 6e-50, Method: Compositional matrix adjust.
 Identities = 112/140 (80%), Positives = 124/140 (89%), Gaps = 5/140 (3%)

Query  1    MPP-AKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGH  59
            MPP +++G A      +K RR+EKKNV HG AHIKSTFNNTIV+ITDP G VI+WAS+GH
Sbjct  1    MPPKSRQGSAAV----KKIRRKEKKNVSHGHAHIKSTFNNTIVSITDPTGAVISWASAGH  56

Query  60   VGFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGA  119
            VGFKGSRKSTPFAAQ+AAENAAR+A +HG+RKVDVFVKGPGSGRETAIRSLQAAGLEVGA
Sbjct  57   VGFKGSRKSTPFAAQMAAENAARQAIEHGMRKVDVFVKGPGSGRETAIRSLQAAGLEVGA  116

Query  120  ISDVTPQPHNGVRPPKRRRV  139
            ISDVTPQ HNG RPPKRRRV
Sbjct  117  ISDVTPQAHNGTRPPKRRRV  136


>gi|333026538|ref|ZP_08454602.1| putative 30S ribosomal protein S11 [Streptomyces sp. Tu6071]
 gi|332746390|gb|EGJ76831.1| putative 30S ribosomal protein S11 [Streptomyces sp. Tu6071]
Length=122

 Score =  199 bits (507),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 103/121 (86%), Positives = 114/121 (95%), Gaps = 0/121 (0%)

Query  19   RRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAE  78
            RR+EKKNV HG AHIKSTFNNTI++ITDP GNVI+WAS+GHVGFKGSRKSTPFAAQ+AAE
Sbjct  2    RRKEKKNVAHGHAHIKSTFNNTIISITDPTGNVISWASAGHVGFKGSRKSTPFAAQMAAE  61

Query  79   NAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPKRRR  138
            +AAR+AQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I DVTP PHNG RPPKRRR
Sbjct  62   SAARRAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSIQDVTPTPHNGCRPPKRRR  121

Query  139  V  139
            V
Sbjct  122  V  122


>gi|271962662|ref|YP_003336858.1| 30S ribosomal protein S11 [Streptosporangium roseum DSM 43021]
 gi|270505837|gb|ACZ84115.1| ribosomal protein S11 [Streptosporangium roseum DSM 43021]
Length=134

 Score =  199 bits (506),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 105/124 (85%), Positives = 115/124 (93%), Gaps = 0/124 (0%)

Query  16   QKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQL  75
            +K RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHVGFKGSRKSTPFAAQ+
Sbjct  11   KKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPSGNVISWASAGHVGFKGSRKSTPFAAQM  70

Query  76   AAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPK  135
            AAENAAR+A +HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I DVTP PHNG RPPK
Sbjct  71   AAENAARRAMEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSIQDVTPVPHNGCRPPK  130

Query  136  RRRV  139
            RRRV
Sbjct  131  RRRV  134


>gi|269955461|ref|YP_003325250.1| 30S ribosomal protein S11 [Xylanimonas cellulosilytica DSM 15894]
 gi|269304142|gb|ACZ29692.1| ribosomal protein S11 [Xylanimonas cellulosilytica DSM 15894]
Length=135

 Score =  199 bits (505),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 110/139 (80%), Positives = 122/139 (88%), Gaps = 4/139 (2%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  +  A +    +K RR++KKNVP G AHIKSTFNNTIV+ITDP G VIAWAS+GHV
Sbjct  1    MPPKTRAAAGT----RKPRRKDKKNVPLGQAHIKSTFNNTIVSITDPTGAVIAWASAGHV  56

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAE+AAR+AQ+HGV+KVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct  57   GFKGSRKSTPFAAQLAAESAARRAQEHGVKKVDVFVKGPGSGRETAIRSLQATGLEVGSI  116

Query  121  SDVTPQPHNGVRPPKRRRV  139
             DVTPQ HNGVRPPKRRRV
Sbjct  117  QDVTPQAHNGVRPPKRRRV  135


>gi|331699147|ref|YP_004335386.1| 30S ribosomal protein S11 [Pseudonocardia dioxanivorans CB1190]
 gi|326953836|gb|AEA27533.1| 30S ribosomal protein S11 [Pseudonocardia dioxanivorans CB1190]
Length=135

 Score =  198 bits (503),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 113/139 (82%), Positives = 122/139 (88%), Gaps = 4/139 (2%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  +G A      +K RR+EKKNV HG AHIKSTFNNTIV+ITDP G VIAWAS+GHV
Sbjct  1    MPPRTRGAAGP----KKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGAVIAWASAGHV  56

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQ+AAENAARKA +HG++KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  57   GFKGSRKSTPFAAQMAAENAARKAAEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI  116

Query  121  SDVTPQPHNGVRPPKRRRV  139
            SDVTPQPHNG RPPKRRRV
Sbjct  117  SDVTPQPHNGCRPPKRRRV  135


>gi|300782637|ref|YP_003762928.1| 30S ribosomal protein S11 [Amycolatopsis mediterranei U32]
 gi|299792151|gb|ADJ42526.1| small subunit ribosomal protein S11 [Amycolatopsis mediterranei 
U32]
 gi|340524008|gb|AEK39213.1| 30S ribosomal protein S11 [Amycolatopsis mediterranei S699]
Length=135

 Score =  197 bits (502),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 112/139 (81%), Positives = 121/139 (88%), Gaps = 4/139 (2%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  +    +A   +K RR+EKKNV HG AHIKSTFNNTIV+ITDP G VIAWASSGHV
Sbjct  1    MPPKSR----TAAGAKKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGAVIAWASSGHV  56

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQ+AAENAARKA +HG++KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct  57   GFKGSRKSTPFAAQMAAENAARKAAEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI  116

Query  121  SDVTPQPHNGVRPPKRRRV  139
             DVTPQPHNG RPPKRRRV
Sbjct  117  QDVTPQPHNGCRPPKRRRV  135


>gi|334336212|ref|YP_004541364.1| 30S ribosomal protein S11 [Isoptericola variabilis 225]
 gi|334106580|gb|AEG43470.1| 30S ribosomal protein S11 [Isoptericola variabilis 225]
Length=135

 Score =  197 bits (502),  Expect = 4e-49, Method: Compositional matrix adjust.
 Identities = 109/139 (79%), Positives = 121/139 (88%), Gaps = 4/139 (2%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  +  A S    +K RR++KKNVP G AHIKSTFNNTIV+ITDP G VI+WAS+GHV
Sbjct  1    MPPKTRATAGS----RKPRRKDKKNVPVGQAHIKSTFNNTIVSITDPSGAVISWASAGHV  56

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQLAAE+AAR+AQ+HGV+KVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct  57   GFKGSRKSTPFAAQLAAESAARRAQEHGVKKVDVFVKGPGSGRETAIRSLQATGLEVGSI  116

Query  121  SDVTPQPHNGVRPPKRRRV  139
             DVTPQ HNG RPPKRRRV
Sbjct  117  QDVTPQAHNGCRPPKRRRV  135


>gi|269128487|ref|YP_003301857.1| 30S ribosomal protein S11 [Thermomonospora curvata DSM 43183]
 gi|268313445|gb|ACY99819.1| ribosomal protein S11 [Thermomonospora curvata DSM 43183]
Length=133

 Score =  197 bits (500),  Expect = 6e-49, Method: Compositional matrix adjust.
 Identities = 109/139 (79%), Positives = 119/139 (86%), Gaps = 6/139 (4%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  K  A      +K RR+EKKN+ HG AHIKSTFNNTIV+ITDPQGNVI+WAS+GHV
Sbjct  1    MPPRSKVGA------KKVRRKEKKNIAHGHAHIKSTFNNTIVSITDPQGNVISWASAGHV  54

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTPFAAQ AAE AAR+A +HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct  55   GFKGSRKSTPFAAQQAAEAAARRAMEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSI  114

Query  121  SDVTPQPHNGVRPPKRRRV  139
             DVTP PHNG RPPKRRRV
Sbjct  115  QDVTPVPHNGCRPPKRRRV  133


>gi|302524020|ref|ZP_07276362.1| 30S ribosomal protein S11 [Streptomyces sp. AA4]
 gi|302432915|gb|EFL04731.1| 30S ribosomal protein S11 [Streptomyces sp. AA4]
Length=134

 Score =  196 bits (498),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 108/124 (88%), Positives = 115/124 (93%), Gaps = 0/124 (0%)

Query  16   QKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQL  75
            +K RR+EKKNV HG AHIKSTFNNTIV+ITDP G VIAWASSGHVGFKGSRKSTPFAAQ+
Sbjct  11   KKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGAVIAWASSGHVGFKGSRKSTPFAAQM  70

Query  76   AAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPK  135
            AAENAARKA +HG++KVDVFVKGPGSGRETAIRSLQAAGLEVG I DVTPQPHNG RPPK
Sbjct  71   AAENAARKAAEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGTIQDVTPQPHNGCRPPK  130

Query  136  RRRV  139
            RRRV
Sbjct  131  RRRV  134


>gi|329945756|ref|ZP_08293443.1| 30S ribosomal protein S11 [Actinomyces sp. oral taxon 170 str. 
F0386]
 gi|328528204|gb|EGF55182.1| 30S ribosomal protein S11 [Actinomyces sp. oral taxon 170 str. 
F0386]
Length=133

 Score =  195 bits (496),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 105/139 (76%), Positives = 121/139 (88%), Gaps = 6/139 (4%)

Query  1    MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV  60
            MPP  +  A      +KTRR+++KNV HG A+IKSTFNNTIV++TDPQG VIAW SSG V
Sbjct  1    MPPKTRAAA------RKTRRKDRKNVTHGHAYIKSTFNNTIVSLTDPQGAVIAWCSSGQV  54

Query  61   GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI  120
            GFKGSRKSTP+AAQLAAE+AAR+AQ+HG++KVDVFVKGPGSGRETAIRSLQAAGLEVG+I
Sbjct  55   GFKGSRKSTPYAAQLAAESAARRAQEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGSI  114

Query  121  SDVTPQPHNGVRPPKRRRV  139
            +DVTPQ  NG RPPKRRRV
Sbjct  115  TDVTPQAFNGCRPPKRRRV  133



Lambda     K      H
   0.313    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131443546824


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40