BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3459c
Length=139
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610595|ref|NP_217976.1| 30S ribosomal protein S11 [Mycobact... 278 2e-73
gi|31794635|ref|NP_857128.1| 30S ribosomal protein S11 [Mycobact... 276 7e-73
gi|289759622|ref|ZP_06519000.1| LOW QUALITY PROTEIN: 30S ribosom... 252 1e-65
gi|240167781|ref|ZP_04746440.1| 30S ribosomal protein S11 [Mycob... 240 4e-62
gi|118616623|ref|YP_904955.1| 30S ribosomal protein S11 [Mycobac... 237 4e-61
gi|118467427|ref|YP_885904.1| 30S ribosomal protein S11 [Mycobac... 234 3e-60
gi|333991922|ref|YP_004524536.1| 30S ribosomal protein S11 RpsK ... 232 2e-59
gi|120402445|ref|YP_952274.1| 30S ribosomal protein S11 [Mycobac... 231 4e-59
gi|41410329|ref|NP_963165.1| 30S ribosomal protein S11 [Mycobact... 229 1e-58
gi|145225548|ref|YP_001136226.1| 30S ribosomal protein S11 [Myco... 229 1e-58
gi|342861867|ref|ZP_08718512.1| 30S ribosomal protein S11 [Mycob... 228 2e-58
gi|254819219|ref|ZP_05224220.1| 30S ribosomal protein S11 [Mycob... 228 2e-58
gi|15828061|ref|NP_302324.1| 30S ribosomal protein S11 [Mycobact... 228 3e-58
gi|169630851|ref|YP_001704500.1| 30S ribosomal protein S11 [Myco... 227 4e-58
gi|336460706|gb|EGO39596.1| 30S ribosomal protein S11 [Mycobacte... 227 6e-58
gi|333918172|ref|YP_004491753.1| 30S ribosomal protein S11 [Amyc... 225 2e-57
gi|296168683|ref|ZP_06850432.1| 30S ribosomal protein S11 [Mycob... 224 3e-57
gi|108798083|ref|YP_638280.1| 30S ribosomal protein S11 [Mycobac... 224 4e-57
gi|226305368|ref|YP_002765326.1| 30S ribosomal protein S11 [Rhod... 222 1e-56
gi|111023123|ref|YP_706095.1| 30S ribosomal protein S11 [Rhodoco... 222 2e-56
gi|226365622|ref|YP_002783405.1| 30S ribosomal protein S11 [Rhod... 221 4e-56
gi|54022802|ref|YP_117044.1| 30S ribosomal protein S11 [Nocardia... 219 9e-56
gi|296141064|ref|YP_003648307.1| 30S ribosomal protein S11 [Tsuk... 214 4e-54
gi|317505827|ref|ZP_07963672.1| 30S ribosomal protein S11 [Segni... 214 5e-54
gi|296394892|ref|YP_003659776.1| 30S ribosomal protein S11 [Segn... 213 7e-54
gi|343927696|ref|ZP_08767164.1| 30S ribosomal protein S11 [Gordo... 211 4e-53
gi|88854651|ref|ZP_01129317.1| 30S ribosomal protein S11 [marine... 211 4e-53
gi|262203542|ref|YP_003274750.1| 30S ribosomal protein S11 [Gord... 210 6e-53
gi|86739321|ref|YP_479721.1| 30S ribosomal protein S11 [Frankia ... 208 2e-52
gi|111220572|ref|YP_711366.1| 30S ribosomal protein S11 [Frankia... 208 2e-52
gi|326383230|ref|ZP_08204918.1| 30S ribosomal protein S11 [Gordo... 207 3e-52
gi|336179756|ref|YP_004585131.1| 30S ribosomal protein S11 [Fran... 207 5e-52
gi|295838430|ref|ZP_06825363.1| 30S ribosomal protein S11 [Strep... 203 8e-51
gi|284992848|ref|YP_003411402.1| 30S ribosomal protein S11 [Geod... 202 1e-50
gi|302543335|ref|ZP_07295677.1| 30S ribosomal protein S11 [Strep... 202 2e-50
gi|29831495|ref|NP_826129.1| 30S ribosomal protein S11 [Streptom... 202 2e-50
gi|337767602|emb|CCB76313.1| ribosomal protein S11 (BS11) [Strep... 202 2e-50
gi|21223107|ref|NP_628886.1| 30S ribosomal protein S11 [Streptom... 202 2e-50
gi|563204|gb|AAB17599.1| ribosomal protein S11 [Mycobacterium bo... 201 2e-50
gi|324999250|ref|ZP_08120362.1| 30S ribosomal protein S11 [Pseud... 201 4e-50
gi|258651410|ref|YP_003200566.1| 30S ribosomal protein S11 [Naka... 200 6e-50
gi|333026538|ref|ZP_08454602.1| putative 30S ribosomal protein S... 199 1e-49
gi|271962662|ref|YP_003336858.1| 30S ribosomal protein S11 [Stre... 199 1e-49
gi|269955461|ref|YP_003325250.1| 30S ribosomal protein S11 [Xyla... 199 1e-49
gi|331699147|ref|YP_004335386.1| 30S ribosomal protein S11 [Pseu... 198 2e-49
gi|300782637|ref|YP_003762928.1| 30S ribosomal protein S11 [Amyc... 197 3e-49
gi|334336212|ref|YP_004541364.1| 30S ribosomal protein S11 [Isop... 197 4e-49
gi|269128487|ref|YP_003301857.1| 30S ribosomal protein S11 [Ther... 197 6e-49
gi|302524020|ref|ZP_07276362.1| 30S ribosomal protein S11 [Strep... 196 1e-48
gi|329945756|ref|ZP_08293443.1| 30S ribosomal protein S11 [Actin... 195 2e-48
>gi|15610595|ref|NP_217976.1| 30S ribosomal protein S11 [Mycobacterium tuberculosis H37Rv]
gi|15843054|ref|NP_338091.1| 30S ribosomal protein S11 [Mycobacterium tuberculosis CDC1551]
gi|148663324|ref|YP_001284847.1| 30S ribosomal protein S11 [Mycobacterium tuberculosis H37Ra]
60 more sequence titles
Length=139
Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV
Sbjct 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNGVRPPKRRRV
Sbjct 121 SDVTPQPHNGVRPPKRRRV 139
>gi|31794635|ref|NP_857128.1| 30S ribosomal protein S11 [Mycobacterium bovis AF2122/97]
gi|121639379|ref|YP_979603.1| 30S ribosomal protein S11 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224991875|ref|YP_002646564.1| 30S ribosomal protein S11 [Mycobacterium bovis BCG str. Tokyo
172]
13 more sequence titles
Length=139
Score = 276 bits (706), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV
Sbjct 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNGVRPP RRRV
Sbjct 121 SDVTPQPHNGVRPPNRRRV 139
>gi|289759622|ref|ZP_06519000.1| LOW QUALITY PROTEIN: 30S ribosomal protein S11 [Mycobacterium
tuberculosis T85]
gi|289715186|gb|EFD79198.1| LOW QUALITY PROTEIN: 30S ribosomal protein S11 [Mycobacterium
tuberculosis T85]
Length=126
Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/126 (99%), Positives = 126/126 (100%), Gaps = 0/126 (0%)
Query 14 KGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAA 73
+GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAA
Sbjct 1 EGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAA 60
Query 74 QLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRP 133
QLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRP
Sbjct 61 QLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRP 120
Query 134 PKRRRV 139
PKRRRV
Sbjct 121 PKRRRV 126
>gi|240167781|ref|ZP_04746440.1| 30S ribosomal protein S11 [Mycobacterium kansasii ATCC 12478]
Length=142
Score = 240 bits (613), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/142 (94%), Positives = 135/142 (96%), Gaps = 3/142 (2%)
Query 1 MPPAKK---GPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASS 57
MPPAKK G A +KGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASS
Sbjct 1 MPPAKKTASGAAKKGQKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASS 60
Query 58 GHVGFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEV 117
GHVGFKGSRKSTPFAAQLAAENAARKAQ+HGVRKVDVFVKGPGSGRETAIRSLQAAGLEV
Sbjct 61 GHVGFKGSRKSTPFAAQLAAENAARKAQEHGVRKVDVFVKGPGSGRETAIRSLQAAGLEV 120
Query 118 GAISDVTPQPHNGVRPPKRRRV 139
GAISDVTPQPHNGVRPPKRRRV
Sbjct 121 GAISDVTPQPHNGVRPPKRRRV 142
>gi|118616623|ref|YP_904955.1| 30S ribosomal protein S11 [Mycobacterium ulcerans Agy99]
gi|183981108|ref|YP_001849399.1| 30S ribosomal protein S11, RpsK [Mycobacterium marinum M]
gi|152060798|sp|A0PMB5.1|RS11_MYCUA RecName: Full=30S ribosomal protein S11
gi|226708390|sp|B2HCX2.1|RS11_MYCMM RecName: Full=30S ribosomal protein S11
gi|118568733|gb|ABL03484.1| 30S ribosomal protein S11, RpsK [Mycobacterium ulcerans Agy99]
gi|183174434|gb|ACC39544.1| 30S ribosomal protein S11, RpsK [Mycobacterium marinum M]
Length=138
Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/139 (95%), Positives = 133/139 (96%), Gaps = 1/139 (0%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP KK T +KGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV
Sbjct 1 MPP-KKASGTGPKKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 59
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct 60 GFKGSRKSTPFAAQLAAENAARKAQEHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 119
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNGVRPPKRRRV
Sbjct 120 SDVTPQPHNGVRPPKRRRV 138
>gi|118467427|ref|YP_885904.1| 30S ribosomal protein S11 [Mycobacterium smegmatis str. MC2 155]
gi|152060795|sp|A0QSL6.1|RS11_MYCS2 RecName: Full=30S ribosomal protein S11
gi|118168714|gb|ABK69610.1| ribosomal protein S11 [Mycobacterium smegmatis str. MC2 155]
Length=138
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/139 (93%), Positives = 133/139 (96%), Gaps = 1/139 (0%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
M AKKG T+A+KGQKTRRREKKNVPHGAAHIKSTFNNTIV+ITDPQGNVIAWASSGHV
Sbjct 1 MAQAKKG-GTAAKKGQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHV 59
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 60 GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI 119
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 120 SDVTPQPHNGCRPPKRRRV 138
>gi|333991922|ref|YP_004524536.1| 30S ribosomal protein S11 RpsK [Mycobacterium sp. JDM601]
gi|333487890|gb|AEF37282.1| 30S ribosomal protein S11 RpsK [Mycobacterium sp. JDM601]
Length=136
Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/131 (96%), Positives = 128/131 (98%), Gaps = 0/131 (0%)
Query 9 ATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKS 68
AT +KGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKS
Sbjct 6 ATGPKKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKS 65
Query 69 TPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPH 128
TPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPH
Sbjct 66 TPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPH 125
Query 129 NGVRPPKRRRV 139
NG RPPKRRRV
Sbjct 126 NGCRPPKRRRV 136
>gi|120402445|ref|YP_952274.1| 30S ribosomal protein S11 [Mycobacterium vanbaalenii PYR-1]
gi|152060799|sp|A1T518.1|RS11_MYCVP RecName: Full=30S ribosomal protein S11
gi|119955263|gb|ABM12268.1| SSU ribosomal protein S11P [Mycobacterium vanbaalenii PYR-1]
Length=137
Score = 231 bits (588), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 128/139 (93%), Positives = 132/139 (95%), Gaps = 2/139 (1%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
M AKKG A +KGQKTRRREKKNVPHGAAHIKSTFNNTIV+ITDPQGNVIAWASSGHV
Sbjct 1 MAQAKKGGA--PKKGQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHV 58
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct 59 GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 118
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 119 SDVTPQPHNGCRPPKRRRV 137
>gi|41410329|ref|NP_963165.1| 30S ribosomal protein S11 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118462594|ref|YP_883535.1| 30S ribosomal protein S11 [Mycobacterium avium 104]
gi|254776832|ref|ZP_05218348.1| 30S ribosomal protein S11 [Mycobacterium avium subsp. avium ATCC
25291]
gi|59798796|sp|Q73S45.1|RS11_MYCPA RecName: Full=30S ribosomal protein S11
gi|152060793|sp|A0QKU7.1|RS11_MYCA1 RecName: Full=30S ribosomal protein S11
gi|41399163|gb|AAS06781.1| RpsK [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118163881|gb|ABK64778.1| ribosomal protein S11 [Mycobacterium avium 104]
Length=138
Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/125 (99%), Positives = 125/125 (100%), Gaps = 0/125 (0%)
Query 15 GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ 74
GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ
Sbjct 14 GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ 73
Query 75 LAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP 134
LAAENAARKAQ+HGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP
Sbjct 74 LAAENAARKAQEHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP 133
Query 135 KRRRV 139
KRRRV
Sbjct 134 KRRRV 138
>gi|145225548|ref|YP_001136226.1| 30S ribosomal protein S11 [Mycobacterium gilvum PYR-GCK]
gi|315445900|ref|YP_004078779.1| 30S ribosomal protein S11P [Mycobacterium sp. Spyr1]
gi|189040422|sp|A4TEI1.1|RS11_MYCGI RecName: Full=30S ribosomal protein S11
gi|145218034|gb|ABP47438.1| SSU ribosomal protein S11P [Mycobacterium gilvum PYR-GCK]
gi|315264203|gb|ADU00945.1| SSU ribosomal protein S11P [Mycobacterium sp. Spyr1]
Length=136
Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/139 (91%), Positives = 132/139 (95%), Gaps = 3/139 (2%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
M AKKG + +KGQKTRRREKKNVPHGAAHIKSTFNNTIV+ITDPQGNVIAWASSGHV
Sbjct 1 MAQAKKG---APKKGQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHV 57
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct 58 GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 117
Query 121 SDVTPQPHNGVRPPKRRRV 139
+DVTPQPHNG RPPKRRRV
Sbjct 118 ADVTPQPHNGCRPPKRRRV 136
>gi|342861867|ref|ZP_08718512.1| 30S ribosomal protein S11 [Mycobacterium colombiense CECT 3035]
gi|342130684|gb|EGT83988.1| 30S ribosomal protein S11 [Mycobacterium colombiense CECT 3035]
Length=138
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/125 (99%), Positives = 125/125 (100%), Gaps = 0/125 (0%)
Query 15 GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ 74
GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ
Sbjct 14 GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ 73
Query 75 LAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP 134
LAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP
Sbjct 74 LAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP 133
Query 135 KRRRV 139
KRRRV
Sbjct 134 KRRRV 138
>gi|254819219|ref|ZP_05224220.1| 30S ribosomal protein S11 [Mycobacterium intracellulare ATCC
13950]
Length=138
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/125 (99%), Positives = 125/125 (100%), Gaps = 0/125 (0%)
Query 15 GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ 74
GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ
Sbjct 14 GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ 73
Query 75 LAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP 134
LAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP
Sbjct 74 LAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP 133
Query 135 KRRRV 139
KRRRV
Sbjct 134 KRRRV 138
>gi|15828061|ref|NP_302324.1| 30S ribosomal protein S11 [Mycobacterium leprae TN]
gi|221230538|ref|YP_002503954.1| 30S ribosomal protein S11 [Mycobacterium leprae Br4923]
gi|7388114|sp|Q9X7A0.1|RS11_MYCLE RecName: Full=30S ribosomal protein S11
gi|254811035|sp|B8ZSH8.1|RS11_MYCLB RecName: Full=30S ribosomal protein S11
gi|4539114|emb|CAB39835.1| putative 30S ribosomal protein S11 [Mycobacterium leprae]
gi|13093614|emb|CAC30914.1| 30S ribosomal protein S11 [Mycobacterium leprae]
gi|219933645|emb|CAR72056.1| 30S ribosomal protein S11 [Mycobacterium leprae Br4923]
Length=138
Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/139 (90%), Positives = 130/139 (94%), Gaps = 1/139 (0%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP KK A +KGQKTR+REKKN+P+GAAHIKSTFNNTIVTITD QGNVIAWASSGHV
Sbjct 1 MPP-KKANAAGPKKGQKTRKREKKNIPYGAAHIKSTFNNTIVTITDQQGNVIAWASSGHV 59
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HGVRKVDVFV GPGSGRETAIRSLQAAGLEVGAI
Sbjct 60 GFKGSRKSTPFAAQLAAENAARKAQEHGVRKVDVFVMGPGSGRETAIRSLQAAGLEVGAI 119
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 120 SDVTPQPHNGCRPPKRRRV 138
>gi|169630851|ref|YP_001704500.1| 30S ribosomal protein S11 [Mycobacterium abscessus ATCC 19977]
gi|226708389|sp|B1MGA1.1|RS11_MYCA9 RecName: Full=30S ribosomal protein S11
gi|169242818|emb|CAM63846.1| 30S ribosomal protein S11 [Mycobacterium abscessus]
Length=138
Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/139 (90%), Positives = 130/139 (94%), Gaps = 1/139 (0%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
M P K G A +K QKTRRREKKNVPHGAAHIKSTFNNTIV+ITDPQGNVI+WASSGHV
Sbjct 1 MAPKKPG-AAGPKKAQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVISWASSGHV 59
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct 60 GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 119
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 120 SDVTPQPHNGCRPPKRRRV 138
>gi|336460706|gb|EGO39596.1| 30S ribosomal protein S11 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=138
Score = 227 bits (578), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/125 (99%), Positives = 124/125 (99%), Gaps = 0/125 (0%)
Query 15 GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ 74
GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ
Sbjct 14 GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ 73
Query 75 LAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP 134
LAAENAARKAQ+HGVRKVDVFVKGPGSGRETAIRSLQAAGLEV AISDVTPQPHNGVRPP
Sbjct 74 LAAENAARKAQEHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVDAISDVTPQPHNGVRPP 133
Query 135 KRRRV 139
KRRRV
Sbjct 134 KRRRV 138
>gi|333918172|ref|YP_004491753.1| 30S ribosomal protein S11 [Amycolicicoccus subflavus DQS3-9A1]
gi|333480393|gb|AEF38953.1| 30S ribosomal protein S11 [Amycolicicoccus subflavus DQS3-9A1]
Length=137
Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/139 (88%), Positives = 129/139 (93%), Gaps = 2/139 (1%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP K AT +KGQK+RRREKKN+ HG AHIKSTFNNTIV+ITDPQGNVI+WASSGHV
Sbjct 1 MPP--KSRATGGKKGQKSRRREKKNIAHGHAHIKSTFNNTIVSITDPQGNVISWASSGHV 58
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQDHG++KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 59 GFKGSRKSTPFAAQLAAENAARKAQDHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI 118
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 119 SDVTPQPHNGCRPPKRRRV 137
>gi|296168683|ref|ZP_06850432.1| 30S ribosomal protein S11 [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896592|gb|EFG76233.1| 30S ribosomal protein S11 [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=138
Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/125 (96%), Positives = 124/125 (99%), Gaps = 0/125 (0%)
Query 15 GQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ 74
GQKTR+REKKN+PHGAAHIKSTFNNTIV+ITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ
Sbjct 14 GQKTRKREKKNIPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHVGFKGSRKSTPFAAQ 73
Query 75 LAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPP 134
LAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNG RPP
Sbjct 74 LAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGCRPP 133
Query 135 KRRRV 139
KRRRV
Sbjct 134 KRRRV 138
>gi|108798083|ref|YP_638280.1| 30S ribosomal protein S11 [Mycobacterium sp. MCS]
gi|119867179|ref|YP_937131.1| 30S ribosomal protein S11 [Mycobacterium sp. KMS]
gi|126433743|ref|YP_001069434.1| 30S ribosomal protein S11 [Mycobacterium sp. JLS]
6 more sequence titles
Length=138
Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 128/139 (93%), Positives = 134/139 (97%), Gaps = 1/139 (0%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP K A+SA+KGQKTRRREKKNVPHGAAHIKSTFNNTIV+ITDPQGNVIAWASSGHV
Sbjct 1 MPPKKAA-ASSAKKGQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHV 59
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVGAI
Sbjct 60 GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 119
Query 121 SDVTPQPHNGVRPPKRRRV 139
+DVTPQPHNG RPPKRRRV
Sbjct 120 ADVTPQPHNGCRPPKRRRV 138
>gi|226305368|ref|YP_002765326.1| 30S ribosomal protein S11 [Rhodococcus erythropolis PR4]
gi|229489326|ref|ZP_04383189.1| 30S ribosomal protein S11 [Rhodococcus erythropolis SK121]
gi|259494632|sp|C0ZW52.1|RS11_RHOE4 RecName: Full=30S ribosomal protein S11
gi|226184483|dbj|BAH32587.1| 30S ribosomal protein S11 [Rhodococcus erythropolis PR4]
gi|229323423|gb|EEN89181.1| 30S ribosomal protein S11 [Rhodococcus erythropolis SK121]
Length=137
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/139 (87%), Positives = 129/139 (93%), Gaps = 2/139 (1%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP K +T +K QKTRRR+KKN+PHGAAHIKSTFNNTIV+ITDP GNVI+WASSGHV
Sbjct 1 MPP--KSRSTGPKKTQKTRRRDKKNIPHGAAHIKSTFNNTIVSITDPAGNVISWASSGHV 58
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAE+AARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 59 GFKGSRKSTPFAAQLAAESAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI 118
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 119 SDVTPQPHNGCRPPKRRRV 137
>gi|111023123|ref|YP_706095.1| 30S ribosomal protein S11 [Rhodococcus jostii RHA1]
gi|123339769|sp|Q0S3E9.1|RS11_RHOSR RecName: Full=30S ribosomal protein S11
gi|110822653|gb|ABG97937.1| 30S ribosomal protein S11 [Rhodococcus jostii RHA1]
Length=137
Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/139 (88%), Positives = 128/139 (93%), Gaps = 2/139 (1%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP +G T +K QK RRR+KKNVPHGAAHIKSTFNNTIV+ITDP GNVI+WASSGHV
Sbjct 1 MPPKSRG--TGPKKTQKARRRDKKNVPHGAAHIKSTFNNTIVSITDPAGNVISWASSGHV 58
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 59 GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI 118
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 119 SDVTPQPHNGCRPPKRRRV 137
>gi|226365622|ref|YP_002783405.1| 30S ribosomal protein S11 [Rhodococcus opacus B4]
gi|312140891|ref|YP_004008227.1| 30S ribosomal protein s11 rpsk [Rhodococcus equi 103S]
gi|325675471|ref|ZP_08155155.1| 30S ribosomal protein S11 [Rhodococcus equi ATCC 33707]
gi|254811039|sp|C1B039.1|RS11_RHOOB RecName: Full=30S ribosomal protein S11
gi|226244112|dbj|BAH54460.1| 30S ribosomal protein S11 [Rhodococcus opacus B4]
gi|311890230|emb|CBH49548.1| 30S ribosomal protein S11 RpsK [Rhodococcus equi 103S]
gi|325553442|gb|EGD23120.1| 30S ribosomal protein S11 [Rhodococcus equi ATCC 33707]
Length=137
Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/139 (88%), Positives = 128/139 (93%), Gaps = 2/139 (1%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP K +T +K QK RRR+KKNVPHGAAHIKSTFNNTIV+ITDP GNVI+WASSGHV
Sbjct 1 MPP--KSRSTGPKKTQKARRRDKKNVPHGAAHIKSTFNNTIVSITDPAGNVISWASSGHV 58
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 59 GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI 118
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 119 SDVTPQPHNGCRPPKRRRV 137
>gi|54022802|ref|YP_117044.1| 30S ribosomal protein S11 [Nocardia farcinica IFM 10152]
gi|59798618|sp|Q5Z1L1.1|RS11_NOCFA RecName: Full=30S ribosomal protein S11
gi|54014310|dbj|BAD55680.1| putative ribosomal protein S11 [Nocardia farcinica IFM 10152]
Length=137
Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 120/139 (87%), Positives = 128/139 (93%), Gaps = 2/139 (1%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP K A+ +K QK+RRR+KKNVPHG AHIKSTFNNTIV+ITDP GNVI+WASSGHV
Sbjct 1 MPP--KSRASGPKKTQKSRRRDKKNVPHGNAHIKSTFNNTIVSITDPNGNVISWASSGHV 58
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 59 GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI 118
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 119 SDVTPQPHNGCRPPKRRRV 137
>gi|296141064|ref|YP_003648307.1| 30S ribosomal protein S11 [Tsukamurella paurometabola DSM 20162]
gi|296029198|gb|ADG79968.1| 30S ribosomal protein S11 [Tsukamurella paurometabola DSM 20162]
Length=137
Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/139 (86%), Positives = 128/139 (93%), Gaps = 2/139 (1%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP + A+ A+KG +RRREKKNVPHG AHIKSTFNNTIV+ITDP GNVI+WASSGHV
Sbjct 1 MPPKSRA-ASGAKKGA-SRRREKKNVPHGHAHIKSTFNNTIVSITDPAGNVISWASSGHV 58
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ++GV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 59 GFKGSRKSTPFAAQLAAENAARKAQENGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI 118
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 119 SDVTPQPHNGCRPPKRRRV 137
>gi|317505827|ref|ZP_07963672.1| 30S ribosomal protein S11 [Segniliparus rugosus ATCC BAA-974]
gi|316255909|gb|EFV15134.1| 30S ribosomal protein S11 [Segniliparus rugosus ATCC BAA-974]
Length=134
Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/139 (85%), Positives = 125/139 (90%), Gaps = 5/139 (3%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP + +K RRREKKNVP+GAAHIKSTFNNTIV+ITDP+GNVIAWASSGHV
Sbjct 1 MPPKNRAAGV-----KKVRRREKKNVPNGAAHIKSTFNNTIVSITDPEGNVIAWASSGHV 55
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HG++KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 56 GFKGSRKSTPFAAQLAAENAARKAQEHGLKKVDVFVKGPGSGRETAIRSLQAAGLEVGNI 115
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 116 SDVTPQPHNGCRPPKRRRV 134
>gi|296394892|ref|YP_003659776.1| 30S ribosomal protein S11 [Segniliparus rotundus DSM 44985]
gi|296182039|gb|ADG98945.1| 30S ribosomal protein S11 [Segniliparus rotundus DSM 44985]
Length=134
Score = 213 bits (542), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 116/139 (84%), Positives = 125/139 (90%), Gaps = 5/139 (3%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP + +K RRREKKN+P+GAAHIKSTFNNTIV+ITDP+GNVIAWASSGHV
Sbjct 1 MPPKNRAAGV-----KKVRRREKKNIPNGAAHIKSTFNNTIVSITDPEGNVIAWASSGHV 55
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HG++KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 56 GFKGSRKSTPFAAQLAAENAARKAQEHGLKKVDVFVKGPGSGRETAIRSLQAAGLEVGNI 115
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 116 SDVTPQPHNGCRPPKRRRV 134
>gi|343927696|ref|ZP_08767164.1| 30S ribosomal protein S11 [Gordonia alkanivorans NBRC 16433]
gi|343762337|dbj|GAA14090.1| 30S ribosomal protein S11 [Gordonia alkanivorans NBRC 16433]
Length=135
Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/139 (84%), Positives = 125/139 (90%), Gaps = 4/139 (2%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP + SA + TRRR+KKNVPHG AHIKSTFNNTIV+I+DP GN+I+WASSGHV
Sbjct 1 MPPKSR----SAGPKKGTRRRDKKNVPHGHAHIKSTFNNTIVSISDPSGNIISWASSGHV 56
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 57 GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI 116
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 117 SDVTPQPHNGCRPPKRRRV 135
>gi|88854651|ref|ZP_01129317.1| 30S ribosomal protein S11 [marine actinobacterium PHSC20C1]
gi|88815812|gb|EAR25668.1| 30S ribosomal protein S11 [marine actinobacterium PHSC20C1]
Length=132
Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 105/132 (80%), Positives = 119/132 (91%), Gaps = 3/132 (2%)
Query 8 PATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRK 67
P ++ARK RR+EKKNV G AHIKSTFNNTIVTITDP G V+AW+SSG VGFKGSRK
Sbjct 4 PKSAARK---PRRKEKKNVAVGQAHIKSTFNNTIVTITDPTGAVLAWSSSGVVGFKGSRK 60
Query 68 STPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQP 127
STP+AAQ++AE+AAR+AQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG+I+DVTPQ
Sbjct 61 STPYAAQMSAESAARQAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGSINDVTPQT 120
Query 128 HNGVRPPKRRRV 139
HNG RPPKRRRV
Sbjct 121 HNGCRPPKRRRV 132
>gi|262203542|ref|YP_003274750.1| 30S ribosomal protein S11 [Gordonia bronchialis DSM 43247]
gi|262086889|gb|ACY22857.1| 30S ribosomal protein S11 [Gordonia bronchialis DSM 43247]
Length=135
Score = 210 bits (535), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/139 (84%), Positives = 124/139 (90%), Gaps = 4/139 (2%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP + SA + RRR+KKNVPHG AHIKSTFNNTIV+I+DP GNVI+WASSGHV
Sbjct 1 MPPKSR----SAGPKKGARRRDKKNVPHGTAHIKSTFNNTIVSISDPNGNVISWASSGHV 56
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ+HGV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 57 GFKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI 116
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 117 SDVTPQPHNGCRPPKRRRV 135
>gi|86739321|ref|YP_479721.1| 30S ribosomal protein S11 [Frankia sp. CcI3]
gi|123751488|sp|Q2JFF0.1|RS11_FRASC RecName: Full=30S ribosomal protein S11
gi|86566183|gb|ABD09992.1| SSU ribosomal protein S11P [Frankia sp. CcI3]
Length=134
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/132 (85%), Positives = 120/132 (91%), Gaps = 0/132 (0%)
Query 8 PATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRK 67
P T A +K RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHVGFKGSRK
Sbjct 3 PKTRAAGAKKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPSGNVISWASAGHVGFKGSRK 62
Query 68 STPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQP 127
STPFAAQ+AAENAARKAQ+HG+RKVDVFVKGPGSGRETAIRSLQAAGLEVGAI DVTP P
Sbjct 63 STPFAAQMAAENAARKAQEHGMRKVDVFVKGPGSGRETAIRSLQAAGLEVGAIQDVTPTP 122
Query 128 HNGVRPPKRRRV 139
HNG RPPKRRRV
Sbjct 123 HNGCRPPKRRRV 134
>gi|111220572|ref|YP_711366.1| 30S ribosomal protein S11 [Frankia alni ACN14a]
gi|123143522|sp|Q0RRP5.1|RS11_FRAAA RecName: Full=30S ribosomal protein S11
gi|111148104|emb|CAJ59772.1| 30S ribosomal subunit protein S11 [Frankia alni ACN14a]
Length=134
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/132 (85%), Positives = 120/132 (91%), Gaps = 0/132 (0%)
Query 8 PATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRK 67
P T A +K RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHVGFKGSRK
Sbjct 3 PKTRAAGAKKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGNVISWASAGHVGFKGSRK 62
Query 68 STPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQP 127
STPFAAQ+AAENAARKAQ+HG+RKVDVFVKGPGSGRETAIRSLQAAGLEVGAI DVTP P
Sbjct 63 STPFAAQMAAENAARKAQEHGMRKVDVFVKGPGSGRETAIRSLQAAGLEVGAIQDVTPTP 122
Query 128 HNGVRPPKRRRV 139
HNG RPPKRRRV
Sbjct 123 HNGCRPPKRRRV 134
>gi|326383230|ref|ZP_08204918.1| 30S ribosomal protein S11 [Gordonia neofelifaecis NRRL B-59395]
gi|326197980|gb|EGD55166.1| 30S ribosomal protein S11 [Gordonia neofelifaecis NRRL B-59395]
Length=135
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/139 (84%), Positives = 125/139 (90%), Gaps = 4/139 (2%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP + SA + TRRR+KKNVP G AHIKSTFNNTIV+ITDP+GNVI+WASSGHV
Sbjct 1 MPPKSR----SAGPKKGTRRRDKKNVPLGHAHIKSTFNNTIVSITDPEGNVISWASSGHV 56
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAENAARKAQ++GV+KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 57 GFKGSRKSTPFAAQLAAENAARKAQENGVKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI 116
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 117 SDVTPQPHNGCRPPKRRRV 135
>gi|336179756|ref|YP_004585131.1| 30S ribosomal protein S11 [Frankia symbiont of Datisca glomerata]
gi|334860736|gb|AEH11210.1| 30S ribosomal protein S11 [Frankia symbiont of Datisca glomerata]
Length=134
Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 112/132 (85%), Positives = 120/132 (91%), Gaps = 0/132 (0%)
Query 8 PATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRK 67
P T A +K RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHVGFKGSRK
Sbjct 3 PKTRAAGIKKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPSGNVISWASAGHVGFKGSRK 62
Query 68 STPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQP 127
STPFAAQ+AAENAARKAQ+HG+RKVDVFVKGPGSGRETAIRSLQAAGLEVGAI DVTP P
Sbjct 63 STPFAAQMAAENAARKAQEHGMRKVDVFVKGPGSGRETAIRSLQAAGLEVGAIQDVTPTP 122
Query 128 HNGVRPPKRRRV 139
HNG RPPKRRRV
Sbjct 123 HNGCRPPKRRRV 134
>gi|295838430|ref|ZP_06825363.1| 30S ribosomal protein S11 [Streptomyces sp. SPB74]
gi|302519633|ref|ZP_07271975.1| 30S ribosomal protein S11 [Streptomyces sp. SPB78]
gi|318058102|ref|ZP_07976825.1| 30S ribosomal protein S11 [Streptomyces sp. SA3_actG]
gi|318076045|ref|ZP_07983377.1| 30S ribosomal protein S11 [Streptomyces sp. SA3_actF]
gi|197695772|gb|EDY42705.1| 30S ribosomal protein S11 [Streptomyces sp. SPB74]
gi|302428528|gb|EFL00344.1| 30S ribosomal protein S11 [Streptomyces sp. SPB78]
Length=134
Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 109/139 (79%), Positives = 122/139 (88%), Gaps = 5/139 (3%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP + AT +K RR+EKKNV HG AHIKSTFNNTI++ITDP GNVI+WAS+GHV
Sbjct 1 MPPKGRQGAT-----KKVRRKEKKNVAHGHAHIKSTFNNTIISITDPTGNVISWASAGHV 55
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQ+AAE+AAR+AQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct 56 GFKGSRKSTPFAAQMAAESAARRAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSI 115
Query 121 SDVTPQPHNGVRPPKRRRV 139
DVTP PHNG RPPKRRRV
Sbjct 116 QDVTPTPHNGCRPPKRRRV 134
>gi|284992848|ref|YP_003411402.1| 30S ribosomal protein S11 [Geodermatophilus obscurus DSM 43160]
gi|284066093|gb|ADB77031.1| 30S ribosomal protein S11 [Geodermatophilus obscurus DSM 43160]
Length=135
Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/121 (89%), Positives = 114/121 (95%), Gaps = 0/121 (0%)
Query 19 RRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAE 78
RR+EKKNV HGAAHIKSTFNNTIV+ITDP GNVI+WAS+GHVGFKGSRKSTPFAAQ+AAE
Sbjct 15 RRKEKKNVAHGAAHIKSTFNNTIVSITDPTGNVISWASAGHVGFKGSRKSTPFAAQMAAE 74
Query 79 NAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPKRRR 138
NAARKAQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG I DVTPQPHNG RP KRRR
Sbjct 75 NAARKAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGQIQDVTPQPHNGCRPKKRRR 134
Query 139 V 139
V
Sbjct 135 V 135
>gi|302543335|ref|ZP_07295677.1| 30S ribosomal protein S11 [Streptomyces hygroscopicus ATCC 53653]
gi|345008596|ref|YP_004810950.1| 30S ribosomal protein S11 [Streptomyces violaceusniger Tu 4113]
gi|297159623|gb|ADI09335.1| 30S ribosomal protein S11 [Streptomyces bingchenggensis BCW-1]
gi|302460953|gb|EFL24046.1| 30S ribosomal protein S11 [Streptomyces himastatinicus ATCC 53653]
gi|344034945|gb|AEM80670.1| 30S ribosomal protein S11 [Streptomyces violaceusniger Tu 4113]
Length=134
Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/124 (85%), Positives = 116/124 (94%), Gaps = 0/124 (0%)
Query 16 QKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQL 75
+K RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHVGFKGSRKSTPFAAQ+
Sbjct 11 KKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGNVISWASAGHVGFKGSRKSTPFAAQM 70
Query 76 AAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPK 135
AAE+AAR+AQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I DVTP PHNG RPPK
Sbjct 71 AAESAARRAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSIQDVTPTPHNGCRPPK 130
Query 136 RRRV 139
RRRV
Sbjct 131 RRRV 134
>gi|29831495|ref|NP_826129.1| 30S ribosomal protein S11 [Streptomyces avermitilis MA-4680]
gi|182436601|ref|YP_001824320.1| 30S ribosomal protein S11 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|239990056|ref|ZP_04710720.1| 30S ribosomal protein S11 [Streptomyces roseosporus NRRL 11379]
33 more sequence titles
Length=134
Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/139 (80%), Positives = 123/139 (89%), Gaps = 5/139 (3%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP KG +A+K RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHV
Sbjct 1 MPP--KGRQGAAKK---VRRKEKKNVAHGHAHIKSTFNNTIVSITDPSGNVISWASAGHV 55
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQ+AAE+AAR+AQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct 56 GFKGSRKSTPFAAQMAAESAARRAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSI 115
Query 121 SDVTPQPHNGVRPPKRRRV 139
DVTP PHNG RPPKRRRV
Sbjct 116 QDVTPTPHNGCRPPKRRRV 134
>gi|337767602|emb|CCB76313.1| ribosomal protein S11 (BS11) [Streptomyces cattleya NRRL 8057]
Length=134
Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/139 (80%), Positives = 122/139 (88%), Gaps = 5/139 (3%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP KG A+K RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHV
Sbjct 1 MPP--KGRQAGAKK---VRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGNVISWASAGHV 55
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQ+AAE+AAR+AQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct 56 GFKGSRKSTPFAAQMAAESAARRAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSI 115
Query 121 SDVTPQPHNGVRPPKRRRV 139
DVTP PHNG RPPKRRRV
Sbjct 116 QDVTPTPHNGCRPPKRRRV 134
>gi|21223107|ref|NP_628886.1| 30S ribosomal protein S11 [Streptomyces coelicolor A3(2)]
gi|289769689|ref|ZP_06529067.1| 30S ribosomal protein S11 [Streptomyces lividans TK24]
gi|291451887|ref|ZP_06591277.1| 30S ribosomal protein S11 [Streptomyces albus J1074]
8 more sequence titles
Length=134
Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/139 (80%), Positives = 123/139 (89%), Gaps = 5/139 (3%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP KG +A+K RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHV
Sbjct 1 MPP--KGRQGAAKK---VRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGNVISWASAGHV 55
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQ+AAE+AAR+AQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct 56 GFKGSRKSTPFAAQMAAESAARRAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSI 115
Query 121 SDVTPQPHNGVRPPKRRRV 139
DVTP PHNG RPPKRRRV
Sbjct 116 QDVTPTPHNGCRPPKRRRV 134
>gi|563204|gb|AAB17599.1| ribosomal protein S11 [Mycobacterium bovis]
gi|1589488|prf||2211287E ribosomal protein S11
Length=140
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/104 (98%), Positives = 101/104 (98%), Gaps = 0/104 (0%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVI WASSGHV
Sbjct 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIGWASSGHV 60
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRE 104
FKGSRKSTPFAAQLAAEN ARKAQDHGVRKVDVFVKGPGSGRE
Sbjct 61 VFKGSRKSTPFAAQLAAENPARKAQDHGVRKVDVFVKGPGSGRE 104
>gi|324999250|ref|ZP_08120362.1| 30S ribosomal protein S11 [Pseudonocardia sp. P1]
Length=135
Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/142 (81%), Positives = 121/142 (86%), Gaps = 10/142 (7%)
Query 1 MPPAKKGPATSARKG---QKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASS 57
MPP AR+G +K RRREKKNV HG AHIKSTFNNTIV+ITDP G VIAWASS
Sbjct 1 MPP-------RARQGTGPKKVRRREKKNVAHGHAHIKSTFNNTIVSITDPTGAVIAWASS 53
Query 58 GHVGFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEV 117
GHVG KGSRKSTPFAAQLAAENAARKA +HG++K DVFVKGPGSGRETAIRSLQAAGLEV
Sbjct 54 GHVGLKGSRKSTPFAAQLAAENAARKAMEHGMKKCDVFVKGPGSGRETAIRSLQAAGLEV 113
Query 118 GAISDVTPQPHNGVRPPKRRRV 139
G I+DVTPQPHNG RPPKRRRV
Sbjct 114 GTINDVTPQPHNGCRPPKRRRV 135
>gi|258651410|ref|YP_003200566.1| 30S ribosomal protein S11 [Nakamurella multipartita DSM 44233]
gi|258554635|gb|ACV77577.1| ribosomal protein S11 [Nakamurella multipartita DSM 44233]
Length=136
Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/140 (80%), Positives = 124/140 (89%), Gaps = 5/140 (3%)
Query 1 MPP-AKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGH 59
MPP +++G A +K RR+EKKNV HG AHIKSTFNNTIV+ITDP G VI+WAS+GH
Sbjct 1 MPPKSRQGSAAV----KKIRRKEKKNVSHGHAHIKSTFNNTIVSITDPTGAVISWASAGH 56
Query 60 VGFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGA 119
VGFKGSRKSTPFAAQ+AAENAAR+A +HG+RKVDVFVKGPGSGRETAIRSLQAAGLEVGA
Sbjct 57 VGFKGSRKSTPFAAQMAAENAARQAIEHGMRKVDVFVKGPGSGRETAIRSLQAAGLEVGA 116
Query 120 ISDVTPQPHNGVRPPKRRRV 139
ISDVTPQ HNG RPPKRRRV
Sbjct 117 ISDVTPQAHNGTRPPKRRRV 136
>gi|333026538|ref|ZP_08454602.1| putative 30S ribosomal protein S11 [Streptomyces sp. Tu6071]
gi|332746390|gb|EGJ76831.1| putative 30S ribosomal protein S11 [Streptomyces sp. Tu6071]
Length=122
Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/121 (86%), Positives = 114/121 (95%), Gaps = 0/121 (0%)
Query 19 RRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAE 78
RR+EKKNV HG AHIKSTFNNTI++ITDP GNVI+WAS+GHVGFKGSRKSTPFAAQ+AAE
Sbjct 2 RRKEKKNVAHGHAHIKSTFNNTIISITDPTGNVISWASAGHVGFKGSRKSTPFAAQMAAE 61
Query 79 NAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPKRRR 138
+AAR+AQ+HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I DVTP PHNG RPPKRRR
Sbjct 62 SAARRAQEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSIQDVTPTPHNGCRPPKRRR 121
Query 139 V 139
V
Sbjct 122 V 122
>gi|271962662|ref|YP_003336858.1| 30S ribosomal protein S11 [Streptosporangium roseum DSM 43021]
gi|270505837|gb|ACZ84115.1| ribosomal protein S11 [Streptosporangium roseum DSM 43021]
Length=134
Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/124 (85%), Positives = 115/124 (93%), Gaps = 0/124 (0%)
Query 16 QKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQL 75
+K RR+EKKNV HG AHIKSTFNNTIV+ITDP GNVI+WAS+GHVGFKGSRKSTPFAAQ+
Sbjct 11 KKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPSGNVISWASAGHVGFKGSRKSTPFAAQM 70
Query 76 AAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPK 135
AAENAAR+A +HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I DVTP PHNG RPPK
Sbjct 71 AAENAARRAMEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSIQDVTPVPHNGCRPPK 130
Query 136 RRRV 139
RRRV
Sbjct 131 RRRV 134
>gi|269955461|ref|YP_003325250.1| 30S ribosomal protein S11 [Xylanimonas cellulosilytica DSM 15894]
gi|269304142|gb|ACZ29692.1| ribosomal protein S11 [Xylanimonas cellulosilytica DSM 15894]
Length=135
Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/139 (80%), Positives = 122/139 (88%), Gaps = 4/139 (2%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP + A + +K RR++KKNVP G AHIKSTFNNTIV+ITDP G VIAWAS+GHV
Sbjct 1 MPPKTRAAAGT----RKPRRKDKKNVPLGQAHIKSTFNNTIVSITDPTGAVIAWASAGHV 56
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAE+AAR+AQ+HGV+KVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct 57 GFKGSRKSTPFAAQLAAESAARRAQEHGVKKVDVFVKGPGSGRETAIRSLQATGLEVGSI 116
Query 121 SDVTPQPHNGVRPPKRRRV 139
DVTPQ HNGVRPPKRRRV
Sbjct 117 QDVTPQAHNGVRPPKRRRV 135
>gi|331699147|ref|YP_004335386.1| 30S ribosomal protein S11 [Pseudonocardia dioxanivorans CB1190]
gi|326953836|gb|AEA27533.1| 30S ribosomal protein S11 [Pseudonocardia dioxanivorans CB1190]
Length=135
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/139 (82%), Positives = 122/139 (88%), Gaps = 4/139 (2%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP +G A +K RR+EKKNV HG AHIKSTFNNTIV+ITDP G VIAWAS+GHV
Sbjct 1 MPPRTRGAAGP----KKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGAVIAWASAGHV 56
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQ+AAENAARKA +HG++KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 57 GFKGSRKSTPFAAQMAAENAARKAAEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI 116
Query 121 SDVTPQPHNGVRPPKRRRV 139
SDVTPQPHNG RPPKRRRV
Sbjct 117 SDVTPQPHNGCRPPKRRRV 135
>gi|300782637|ref|YP_003762928.1| 30S ribosomal protein S11 [Amycolatopsis mediterranei U32]
gi|299792151|gb|ADJ42526.1| small subunit ribosomal protein S11 [Amycolatopsis mediterranei
U32]
gi|340524008|gb|AEK39213.1| 30S ribosomal protein S11 [Amycolatopsis mediterranei S699]
Length=135
Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/139 (81%), Positives = 121/139 (88%), Gaps = 4/139 (2%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP + +A +K RR+EKKNV HG AHIKSTFNNTIV+ITDP G VIAWASSGHV
Sbjct 1 MPPKSR----TAAGAKKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGAVIAWASSGHV 56
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQ+AAENAARKA +HG++KVDVFVKGPGSGRETAIRSLQAAGLEVG I
Sbjct 57 GFKGSRKSTPFAAQMAAENAARKAAEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGTI 116
Query 121 SDVTPQPHNGVRPPKRRRV 139
DVTPQPHNG RPPKRRRV
Sbjct 117 QDVTPQPHNGCRPPKRRRV 135
>gi|334336212|ref|YP_004541364.1| 30S ribosomal protein S11 [Isoptericola variabilis 225]
gi|334106580|gb|AEG43470.1| 30S ribosomal protein S11 [Isoptericola variabilis 225]
Length=135
Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/139 (79%), Positives = 121/139 (88%), Gaps = 4/139 (2%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP + A S +K RR++KKNVP G AHIKSTFNNTIV+ITDP G VI+WAS+GHV
Sbjct 1 MPPKTRATAGS----RKPRRKDKKNVPVGQAHIKSTFNNTIVSITDPSGAVISWASAGHV 56
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQLAAE+AAR+AQ+HGV+KVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct 57 GFKGSRKSTPFAAQLAAESAARRAQEHGVKKVDVFVKGPGSGRETAIRSLQATGLEVGSI 116
Query 121 SDVTPQPHNGVRPPKRRRV 139
DVTPQ HNG RPPKRRRV
Sbjct 117 QDVTPQAHNGCRPPKRRRV 135
>gi|269128487|ref|YP_003301857.1| 30S ribosomal protein S11 [Thermomonospora curvata DSM 43183]
gi|268313445|gb|ACY99819.1| ribosomal protein S11 [Thermomonospora curvata DSM 43183]
Length=133
Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 109/139 (79%), Positives = 119/139 (86%), Gaps = 6/139 (4%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP K A +K RR+EKKN+ HG AHIKSTFNNTIV+ITDPQGNVI+WAS+GHV
Sbjct 1 MPPRSKVGA------KKVRRKEKKNIAHGHAHIKSTFNNTIVSITDPQGNVISWASAGHV 54
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTPFAAQ AAE AAR+A +HG+RKVDVFVKGPGSGRETAIRSLQA GLEVG+I
Sbjct 55 GFKGSRKSTPFAAQQAAEAAARRAMEHGMRKVDVFVKGPGSGRETAIRSLQATGLEVGSI 114
Query 121 SDVTPQPHNGVRPPKRRRV 139
DVTP PHNG RPPKRRRV
Sbjct 115 QDVTPVPHNGCRPPKRRRV 133
>gi|302524020|ref|ZP_07276362.1| 30S ribosomal protein S11 [Streptomyces sp. AA4]
gi|302432915|gb|EFL04731.1| 30S ribosomal protein S11 [Streptomyces sp. AA4]
Length=134
Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/124 (88%), Positives = 115/124 (93%), Gaps = 0/124 (0%)
Query 16 QKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQL 75
+K RR+EKKNV HG AHIKSTFNNTIV+ITDP G VIAWASSGHVGFKGSRKSTPFAAQ+
Sbjct 11 KKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPTGAVIAWASSGHVGFKGSRKSTPFAAQM 70
Query 76 AAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPK 135
AAENAARKA +HG++KVDVFVKGPGSGRETAIRSLQAAGLEVG I DVTPQPHNG RPPK
Sbjct 71 AAENAARKAAEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGTIQDVTPQPHNGCRPPK 130
Query 136 RRRV 139
RRRV
Sbjct 131 RRRV 134
>gi|329945756|ref|ZP_08293443.1| 30S ribosomal protein S11 [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328528204|gb|EGF55182.1| 30S ribosomal protein S11 [Actinomyces sp. oral taxon 170 str.
F0386]
Length=133
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/139 (76%), Positives = 121/139 (88%), Gaps = 6/139 (4%)
Query 1 MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHV 60
MPP + A +KTRR+++KNV HG A+IKSTFNNTIV++TDPQG VIAW SSG V
Sbjct 1 MPPKTRAAA------RKTRRKDRKNVTHGHAYIKSTFNNTIVSLTDPQGAVIAWCSSGQV 54
Query 61 GFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAI 120
GFKGSRKSTP+AAQLAAE+AAR+AQ+HG++KVDVFVKGPGSGRETAIRSLQAAGLEVG+I
Sbjct 55 GFKGSRKSTPYAAQLAAESAARRAQEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGSI 114
Query 121 SDVTPQPHNGVRPPKRRRV 139
+DVTPQ NG RPPKRRRV
Sbjct 115 TDVTPQAFNGCRPPKRRRV 133
Lambda K H
0.313 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131443546824
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40