BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3462c
Length=73
Score E
Sequences producing significant alignments: (Bits) Value
gi|148824672|ref|YP_001289426.1| translation initiation factor I... 149 1e-34
gi|325675468|ref|ZP_08155152.1| translation initiation factor IF... 148 3e-34
gi|15610598|ref|NP_217979.1| translation initiation factor IF-1 ... 148 3e-34
gi|289526630|pdb|3I4O|A Chain A, Crystal Structure Of Translatio... 147 4e-34
gi|118472549|ref|YP_885901.1| translation initiation factor IF-1... 147 5e-34
gi|300782633|ref|YP_003762924.1| translation initiation factor I... 147 5e-34
gi|262203545|ref|YP_003274753.1| translation initiation factor I... 147 5e-34
gi|145225550|ref|YP_001136228.1| translation initiation factor I... 147 6e-34
gi|257054493|ref|YP_003132325.1| translation initiation factor I... 147 7e-34
gi|343927699|ref|ZP_08767167.1| translation initiation factor IF... 146 1e-33
gi|324999247|ref|ZP_08120359.1| translation initiation factor IF... 146 1e-33
gi|326383227|ref|ZP_08204915.1| translation initiation factor IF... 146 1e-33
gi|256380572|ref|YP_003104232.1| translation initiation factor I... 145 2e-33
gi|291007972|ref|ZP_06565945.1| translation initiation factor IF... 145 3e-33
gi|336460708|gb|EGO39598.1| translation initiation factor IF-1 [... 145 3e-33
gi|284992851|ref|YP_003411405.1| translation initiation factor I... 144 4e-33
gi|296394895|ref|YP_003659779.1| translation initiation factor I... 144 4e-33
gi|317505824|ref|ZP_07963669.1| translation initiation factor IF... 144 4e-33
gi|237786338|ref|YP_002907043.1| translation initiation factor I... 144 6e-33
gi|258651407|ref|YP_003200563.1| translation initiation factor I... 143 8e-33
gi|145596411|ref|YP_001160708.1| translation initiation factor I... 143 9e-33
gi|225020480|ref|ZP_03709672.1| hypothetical protein CORMATOL_00... 143 1e-32
gi|336326400|ref|YP_004606366.1| translation initiation factor I... 142 1e-32
gi|213964785|ref|ZP_03392984.1| translation initiation factor IF... 142 2e-32
gi|86739318|ref|YP_479718.1| translation initiation factor IF-1 ... 142 2e-32
gi|340795286|ref|YP_004760749.1| translation initiation factor I... 142 2e-32
gi|159039810|ref|YP_001539063.1| translation initiation factor I... 141 3e-32
gi|291298737|ref|YP_003510015.1| translation initiation factor I... 140 4e-32
gi|23492404|dbj|BAC17378.1| putative translation initiation fact... 140 7e-32
gi|255326867|ref|ZP_05367943.1| translation initiation factor IF... 139 1e-31
gi|332669541|ref|YP_004452549.1| translation initiation factor I... 139 1e-31
gi|300742034|ref|ZP_07072055.1| translation initiation factor IF... 139 2e-31
gi|269796231|ref|YP_003315686.1| translation initiation factor 1... 139 2e-31
gi|255324775|ref|ZP_05365889.1| translation initiation factor IF... 138 3e-31
gi|269955458|ref|YP_003325247.1| translation initiation factor I... 138 3e-31
gi|296119328|ref|ZP_06837896.1| translation initiation factor IF... 138 3e-31
gi|256831849|ref|YP_003160576.1| translation initiation factor I... 138 3e-31
gi|161485991|ref|NP_737178.2| translation initiation factor IF-1... 138 3e-31
gi|172040037|ref|YP_001799751.1| translation initiation factor I... 137 4e-31
gi|68536852|ref|YP_251557.1| translation initiation factor IF-1 ... 137 5e-31
gi|19551795|ref|NP_599797.1| translation initiation factor IF-1 ... 137 5e-31
gi|227487078|ref|ZP_03917394.1| translation initiation factor IF... 137 5e-31
gi|50955544|ref|YP_062832.1| translation initiation factor IF-1 ... 137 5e-31
gi|227497204|ref|ZP_03927452.1| initiation factor IF1 [Actinomyc... 137 6e-31
gi|148273772|ref|YP_001223333.1| translation initiation factor I... 137 7e-31
gi|38233154|ref|NP_938921.1| translation initiation factor IF-1 ... 137 7e-31
gi|302330095|gb|ADL20289.1| Translation initiation factor IF-1 [... 137 8e-31
gi|72163021|ref|YP_290678.1| translation initiation factor IF-1 ... 137 8e-31
gi|184200285|ref|YP_001854492.1| translation initiation factor I... 136 8e-31
gi|308275776|gb|ADO25675.1| Translation initiation factor IF-1 [... 136 9e-31
>gi|148824672|ref|YP_001289426.1| translation initiation factor IF-1 infA [Mycobacterium tuberculosis
F11]
gi|289576198|ref|ZP_06456425.1| translation initiation factor IF-1 infA [Mycobacterium tuberculosis
K85]
gi|289759625|ref|ZP_06519003.1| translation initiation factor IF-1 [Mycobacterium tuberculosis
T85]
gi|148723199|gb|ABR07824.1| translation initiation factor IF-1 infA [Mycobacterium tuberculosis
F11]
gi|289540629|gb|EFD45207.1| translation initiation factor IF-1 infA [Mycobacterium tuberculosis
K85]
gi|289715189|gb|EFD79201.1| translation initiation factor IF-1 [Mycobacterium tuberculosis
T85]
Length=116
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 44 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 103
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 104 YDLSRGRIVYRYK 116
>gi|325675468|ref|ZP_08155152.1| translation initiation factor IF-1 [Rhodococcus equi ATCC 33707]
gi|325553439|gb|EGD23117.1| translation initiation factor IF-1 [Rhodococcus equi ATCC 33707]
Length=85
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 13 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 72
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 73 YDLSRGRIVYRYK 85
>gi|15610598|ref|NP_217979.1| translation initiation factor IF-1 [Mycobacterium tuberculosis
H37Rv]
gi|15828064|ref|NP_302327.1| translation initiation factor IF-1 [Mycobacterium leprae TN]
gi|15843057|ref|NP_338094.1| translation initiation factor IF-1 [Mycobacterium tuberculosis
CDC1551]
130 more sequence titles
Length=73
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|289526630|pdb|3I4O|A Chain A, Crystal Structure Of Translation Initiation Factor 1
From Mycobacterium Tuberculosis
gi|289526631|pdb|3I4O|B Chain B, Crystal Structure Of Translation Initiation Factor 1
From Mycobacterium Tuberculosis
Length=79
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 7 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 66
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 67 YDLSRGRIVYRYK 79
>gi|118472549|ref|YP_885901.1| translation initiation factor IF-1 [Mycobacterium smegmatis str.
MC2 155]
gi|190359654|sp|A0QSL3.1|IF1_MYCS2 RecName: Full=Translation initiation factor IF-1
gi|118173836|gb|ABK74732.1| translation initiation factor IF-1 [Mycobacterium smegmatis str.
MC2 155]
Length=73
Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/73 (99%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRV+EPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGAIEVEGRVIEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|300782633|ref|YP_003762924.1| translation initiation factor IF-1 [Amycolatopsis mediterranei
U32]
gi|302524016|ref|ZP_07276358.1| translation initiation factor IF-1 [Streptomyces sp. AA4]
gi|331699150|ref|YP_004335389.1| translation initiation factor IF-1 [Pseudonocardia dioxanivorans
CB1190]
gi|299792147|gb|ADJ42522.1| translation initiation factor IF-1 [Amycolatopsis mediterranei
U32]
gi|302432911|gb|EFL04727.1| translation initiation factor IF-1 [Streptomyces sp. AA4]
gi|326953839|gb|AEA27536.1| Translation initiation factor IF-1 [Pseudonocardia dioxanivorans
CB1190]
gi|340524004|gb|AEK39209.1| translation initiation factor IF-1 infA [Amycolatopsis mediterranei
S699]
Length=73
Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/73 (99%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRVVEPLPNAMFR+ELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGAIEVEGRVVEPLPNAMFRVELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|262203545|ref|YP_003274753.1| translation initiation factor IF-1 [Gordonia bronchialis DSM
43247]
gi|262086892|gb|ACY22860.1| translation initiation factor IF-1 [Gordonia bronchialis DSM
43247]
Length=111
Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/73 (98%), Positives = 72/73 (99%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRV+EPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 39 MAKKDGAIEVEGRVIEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 98
Query 61 YDLSRGRIVYRYK 73
YDL RGRIVYRYK
Sbjct 99 YDLGRGRIVYRYK 111
>gi|145225550|ref|YP_001136228.1| translation initiation factor IF-1 [Mycobacterium gilvum PYR-GCK]
gi|296141068|ref|YP_003648311.1| translation initiation factor IF-1 [Tsukamurella paurometabola
DSM 20162]
gi|315445903|ref|YP_004078782.1| bacterial translation initiation factor 1 (bIF-1) [Mycobacterium
sp. Spyr1]
6 more sequence titles
Length=73
Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/73 (99%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDL+RGRIVYRYK
Sbjct 61 YDLTRGRIVYRYK 73
>gi|257054493|ref|YP_003132325.1| translation initiation factor IF-1 [Saccharomonospora viridis
DSM 43017]
gi|333918170|ref|YP_004491751.1| translation initiation factor IF-1 [Amycolicicoccus subflavus
DQS3-9A1]
gi|256584365|gb|ACU95498.1| bacterial translation initiation factor 1 (bIF-1) [Saccharomonospora
viridis DSM 43017]
gi|333480391|gb|AEF38951.1| Translation initiation factor IF-1 [Amycolicicoccus subflavus
DQS3-9A1]
Length=73
Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/73 (98%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRV+EPLPNAMFR+ELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGAIEVEGRVIEPLPNAMFRVELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|343927699|ref|ZP_08767167.1| translation initiation factor IF-1 [Gordonia alkanivorans NBRC
16433]
gi|343762340|dbj|GAA14093.1| translation initiation factor IF-1 [Gordonia alkanivorans NBRC
16433]
Length=73
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/73 (98%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRV+EPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGAIEVEGRVIEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDL+RGRIVYRYK
Sbjct 61 YDLARGRIVYRYK 73
>gi|324999247|ref|ZP_08120359.1| translation initiation factor IF-1 infA [Pseudonocardia sp. P1]
Length=73
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/73 (98%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRVVEPLPNAMFR+ELENGH+VLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGAIEVEGRVVEPLPNAMFRVELENGHRVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|326383227|ref|ZP_08204915.1| translation initiation factor IF-1 [Gordonia neofelifaecis NRRL
B-59395]
gi|326197977|gb|EGD55163.1| translation initiation factor IF-1 [Gordonia neofelifaecis NRRL
B-59395]
Length=73
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/73 (99%), Positives = 72/73 (99%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDL RGRIVYRYK
Sbjct 61 YDLGRGRIVYRYK 73
>gi|256380572|ref|YP_003104232.1| translation initiation factor IF-1 [Actinosynnema mirum DSM 43827]
gi|255924875|gb|ACU40386.1| translation initiation factor IF-1 [Actinosynnema mirum DSM 43827]
Length=73
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/73 (98%), Positives = 72/73 (99%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
M KKDGAIEVEGRVVEPLPNAMFR+ELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MGKKDGAIEVEGRVVEPLPNAMFRVELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|291007972|ref|ZP_06565945.1| translation initiation factor IF-1 [Saccharopolyspora erythraea
NRRL 2338]
Length=73
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/73 (96%), Positives = 72/73 (99%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
M KKDGAIEVEGRV+EPLPNAMFR+ELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MGKKDGAIEVEGRVIEPLPNAMFRVELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|336460708|gb|EGO39598.1| translation initiation factor IF-1 [Mycobacterium avium subsp.
paratuberculosis S397]
Length=73
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/73 (99%), Positives = 72/73 (99%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
Y LSRGRIVYRYK
Sbjct 61 YGLSRGRIVYRYK 73
>gi|284992851|ref|YP_003411405.1| translation initiation factor IF-1 [Geodermatophilus obscurus
DSM 43160]
gi|284066096|gb|ADB77034.1| translation initiation factor IF-1 [Geodermatophilus obscurus
DSM 43160]
Length=73
Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/73 (95%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRVVEPLPNAMFR+EL+NGH+VLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGAIEVEGRVVEPLPNAMFRVELQNGHRVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDL+RGRIVYRYK
Sbjct 61 YDLTRGRIVYRYK 73
>gi|296394895|ref|YP_003659779.1| translation initiation factor IF-1 [Segniliparus rotundus DSM
44985]
gi|296182042|gb|ADG98948.1| translation initiation factor IF-1 [Segniliparus rotundus DSM
44985]
Length=73
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/73 (96%), Positives = 72/73 (99%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRVVEPLPNA FR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGAIEVEGRVVEPLPNATFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|317505824|ref|ZP_07963669.1| translation initiation factor IF-1 [Segniliparus rugosus ATCC
BAA-974]
gi|316255906|gb|EFV15131.1| translation initiation factor IF-1 [Segniliparus rugosus ATCC
BAA-974]
Length=76
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/73 (96%), Positives = 72/73 (99%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIEVEGRVVEPLPNA FR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 4 MAKKDGAIEVEGRVVEPLPNATFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSP 63
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 64 YDLSRGRIVYRYK 76
>gi|237786338|ref|YP_002907043.1| translation initiation factor IF-1 [Corynebacterium kroppenstedtii
DSM 44385]
gi|237759250|gb|ACR18500.1| translation initiation factor IF-1 [Corynebacterium kroppenstedtii
DSM 44385]
Length=73
Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/73 (95%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKK+GAIEVEGR+VEPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKEGAIEVEGRIVEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|258651407|ref|YP_003200563.1| translation initiation factor IF-1 [Nakamurella multipartita
DSM 44233]
gi|258554632|gb|ACV77574.1| translation initiation factor IF-1 [Nakamurella multipartita
DSM 44233]
Length=73
Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/73 (95%), Positives = 72/73 (99%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
M KKDGAIEVEGRVVEPLPNAMFR+ELENGH+VLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MGKKDGAIEVEGRVVEPLPNAMFRVELENGHRVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDL+RGRIVYRYK
Sbjct 61 YDLTRGRIVYRYK 73
>gi|145596411|ref|YP_001160708.1| translation initiation factor IF-1 [Salinispora tropica CNB-440]
gi|145305748|gb|ABP56330.1| bacterial translation initiation factor 1 (bIF-1) [Salinispora
tropica CNB-440]
Length=153
Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/73 (92%), Positives = 71/73 (98%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
M KKDGAIE+EGRV+EPLPNAMFR+EL NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 81 MPKKDGAIEIEGRVIEPLPNAMFRVELANGHKVLAHISGKMRQHYIRILPEDRVVVELSP 140
Query 61 YDLSRGRIVYRYK 73
YDL+RGRIVYRYK
Sbjct 141 YDLTRGRIVYRYK 153
>gi|225020480|ref|ZP_03709672.1| hypothetical protein CORMATOL_00487 [Corynebacterium matruchotii
ATCC 33806]
gi|305680139|ref|ZP_07402949.1| translation initiation factor IF-1 [Corynebacterium matruchotii
ATCC 14266]
gi|334564585|ref|ZP_08517576.1| translation initiation factor IF-1 [Corynebacterium bovis DSM
20582]
gi|224946869|gb|EEG28078.1| hypothetical protein CORMATOL_00487 [Corynebacterium matruchotii
ATCC 33806]
gi|305660759|gb|EFM50256.1| translation initiation factor IF-1 [Corynebacterium matruchotii
ATCC 14266]
Length=73
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/73 (94%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKK+GAIEVEGR+VEPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKEGAIEVEGRIVEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDL+RGRIVYRYK
Sbjct 61 YDLTRGRIVYRYK 73
>gi|336326400|ref|YP_004606366.1| translation initiation factor IF-1 [Corynebacterium resistens
DSM 45100]
gi|336102382|gb|AEI10202.1| translation initiation factor IF-1 [Corynebacterium resistens
DSM 45100]
Length=76
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/73 (92%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKK+GAIEVEGR++EPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 4 MAKKEGAIEVEGRIIEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSP 63
Query 61 YDLSRGRIVYRYK 73
YDL+RGRIVYRYK
Sbjct 64 YDLTRGRIVYRYK 76
>gi|213964785|ref|ZP_03392984.1| translation initiation factor IF-1 [Corynebacterium amycolatum
SK46]
gi|213952321|gb|EEB63704.1| translation initiation factor IF-1 [Corynebacterium amycolatum
SK46]
Length=76
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/73 (95%), Positives = 72/73 (99%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKK+GAIEVEGRVVEPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 4 MAKKEGAIEVEGRVVEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSP 63
Query 61 YDLSRGRIVYRYK 73
YDL RGRIVYRYK
Sbjct 64 YDLERGRIVYRYK 76
>gi|86739318|ref|YP_479718.1| translation initiation factor IF-1 [Frankia sp. CcI3]
gi|111220569|ref|YP_711363.1| translation initiation factor IF-1 [Frankia alni ACN14a]
gi|158317768|ref|YP_001510276.1| translation initiation factor IF-1 [Frankia sp. EAN1pec]
11 more sequence titles
Length=73
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/73 (94%), Positives = 72/73 (99%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
M KKDGAIE+EGRVVEPLPNAMFR+EL+NGH+VLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MPKKDGAIEIEGRVVEPLPNAMFRVELQNGHRVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|340795286|ref|YP_004760749.1| translation initiation factor IF-1 [Corynebacterium variabile
DSM 44702]
gi|340535196|gb|AEK37676.1| translation initiation factor IF-1 [Corynebacterium variabile
DSM 44702]
Length=73
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/73 (92%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKK+GAIEVEG++VEPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKEGAIEVEGKIVEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDL+RGRIVYRYK
Sbjct 61 YDLTRGRIVYRYK 73
>gi|159039810|ref|YP_001539063.1| translation initiation factor IF-1 [Salinispora arenicola CNS-205]
gi|238061098|ref|ZP_04605807.1| translation initiation factor IF-1 [Micromonospora sp. ATCC 39149]
gi|302869947|ref|YP_003838584.1| translation initiation factor IF-1 [Micromonospora aurantiaca
ATCC 27029]
8 more sequence titles
Length=73
Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/73 (92%), Positives = 71/73 (98%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
M KKDGAIE+EGRV+EPLPNAMFR+EL NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MPKKDGAIEIEGRVIEPLPNAMFRVELANGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDL+RGRIVYRYK
Sbjct 61 YDLTRGRIVYRYK 73
>gi|291298737|ref|YP_003510015.1| translation initiation factor IF-1 [Stackebrandtia nassauensis
DSM 44728]
gi|290567957|gb|ADD40922.1| translation initiation factor IF-1 [Stackebrandtia nassauensis
DSM 44728]
Length=73
Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/73 (92%), Positives = 71/73 (98%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
M KKDGAIE+EGRV+EPLPNAMFR+EL NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MPKKDGAIEIEGRVIEPLPNAMFRVELTNGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRY+
Sbjct 61 YDLSRGRIVYRYR 73
>gi|23492404|dbj|BAC17378.1| putative translation initiation factor IF-1 [Corynebacterium
efficiens YS-314]
Length=119
Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/70 (95%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 4 KDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 63
K+GAIEVEGRVVEPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL
Sbjct 50 KEGAIEVEGRVVEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 109
Query 64 SRGRIVYRYK 73
+RGRIVYRYK
Sbjct 110 TRGRIVYRYK 119
>gi|255326867|ref|ZP_05367943.1| translation initiation factor IF-1 [Rothia mucilaginosa ATCC
25296]
gi|283457573|ref|YP_003362156.1| translation initiation factor 1 [Rothia mucilaginosa DY-18]
gi|311111948|ref|YP_003983170.1| translation initiation factor IF-1 [Rothia dentocariosa ATCC
17931]
gi|255296084|gb|EET75425.1| translation initiation factor IF-1 [Rothia mucilaginosa ATCC
25296]
gi|283133571|dbj|BAI64336.1| translation initiation factor 1 [Rothia mucilaginosa DY-18]
gi|310943442|gb|ADP39736.1| translation initiation factor IF-1 [Rothia dentocariosa ATCC
17931]
Length=73
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/73 (92%), Positives = 70/73 (96%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDG IE+EG VVE LPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGVIEIEGSVVEALPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|332669541|ref|YP_004452549.1| translation initiation factor IF-1 [Cellulomonas fimi ATCC 484]
gi|336319958|ref|YP_004599926.1| translation initiation factor IF-1 [Cellvibrio gilvus ATCC 13127]
gi|332338579|gb|AEE45162.1| translation initiation factor IF-1 [Cellulomonas fimi ATCC 484]
gi|336103539|gb|AEI11358.1| translation initiation factor IF-1 [Cellvibrio gilvus ATCC 13127]
Length=73
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/73 (92%), Positives = 69/73 (95%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDG IE+EG VVE LPNAMFR+EL NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGVIEIEGSVVEALPNAMFRVELTNGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|300742034|ref|ZP_07072055.1| translation initiation factor IF-1 [Rothia dentocariosa M567]
gi|300381219|gb|EFJ77781.1| translation initiation factor IF-1 [Rothia dentocariosa M567]
Length=73
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/73 (91%), Positives = 70/73 (96%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDG IE+EG V+E LPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGVIEIEGSVIEALPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|269796231|ref|YP_003315686.1| translation initiation factor 1 [Sanguibacter keddieii DSM 10542]
gi|296130466|ref|YP_003637716.1| translation initiation factor IF-1 [Cellulomonas flavigena DSM
20109]
gi|269098416|gb|ACZ22852.1| bacterial translation initiation factor 1 (bIF-1) [Sanguibacter
keddieii DSM 10542]
gi|296022281|gb|ADG75517.1| translation initiation factor IF-1 [Cellulomonas flavigena DSM
20109]
Length=73
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/73 (92%), Positives = 69/73 (95%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDG IE+EG VVE LPNAMFR+EL NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGVIEIEGSVVEALPNAMFRVELANGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|255324775|ref|ZP_05365889.1| translation initiation factor IF-1 [Corynebacterium tuberculostearicum
SK141]
gi|311740034|ref|ZP_07713868.1| translation initiation factor IF-1 [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255298250|gb|EET77553.1| translation initiation factor IF-1 [Corynebacterium tuberculostearicum
SK141]
gi|311305107|gb|EFQ81176.1| translation initiation factor IF-1 [Corynebacterium pseudogenitalium
ATCC 33035]
Length=87
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/70 (92%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 4 KDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 63
K+GAIEVEGR++EPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL
Sbjct 18 KEGAIEVEGRIIEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 77
Query 64 SRGRIVYRYK 73
+RGRIVYRYK
Sbjct 78 TRGRIVYRYK 87
>gi|269955458|ref|YP_003325247.1| translation initiation factor IF-1 [Xylanimonas cellulosilytica
DSM 15894]
gi|334336209|ref|YP_004541361.1| translation initiation factor IF-1 [Isoptericola variabilis 225]
gi|269304139|gb|ACZ29689.1| translation initiation factor IF-1 [Xylanimonas cellulosilytica
DSM 15894]
gi|334106577|gb|AEG43467.1| translation initiation factor IF-1 [Isoptericola variabilis 225]
Length=73
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/73 (91%), Positives = 69/73 (95%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDG IE+EG V+E LPNAMFR+EL NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGVIEIEGSVIEALPNAMFRVELANGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|296119328|ref|ZP_06837896.1| translation initiation factor IF-1 [Corynebacterium ammoniagenes
DSM 20306]
gi|295967720|gb|EFG80977.1| translation initiation factor IF-1 [Corynebacterium ammoniagenes
DSM 20306]
Length=80
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/70 (93%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 4 KDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 63
K+GAIEVEGR+VEPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL
Sbjct 11 KEGAIEVEGRIVEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 70
Query 64 SRGRIVYRYK 73
+RGRIVYRYK
Sbjct 71 TRGRIVYRYK 80
>gi|256831849|ref|YP_003160576.1| translation initiation factor IF-1 [Jonesia denitrificans DSM
20603]
gi|256685380|gb|ACV08273.1| translation initiation factor IF-1 [Jonesia denitrificans DSM
20603]
Length=73
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/73 (91%), Positives = 69/73 (95%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDG IE+EG VVE LPNAMFR+EL NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGVIEIEGTVVEALPNAMFRVELANGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDL+RGRIVYRYK
Sbjct 61 YDLTRGRIVYRYK 73
>gi|161485991|ref|NP_737178.2| translation initiation factor IF-1 [Corynebacterium efficiens
YS-314]
gi|259506745|ref|ZP_05749645.1| translation initiation factor IF-1 [Corynebacterium efficiens
YS-314]
gi|29427494|sp|Q8FS36.2|IF1_COREF RecName: Full=Translation initiation factor IF-1
gi|259165686|gb|EEW50240.1| translation initiation factor IF-1 [Corynebacterium efficiens
YS-314]
Length=72
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/70 (95%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 4 KDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 63
K+GAIEVEGRVVEPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL
Sbjct 3 KEGAIEVEGRVVEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 62
Query 64 SRGRIVYRYK 73
+RGRIVYRYK
Sbjct 63 TRGRIVYRYK 72
>gi|172040037|ref|YP_001799751.1| translation initiation factor IF-1 [Corynebacterium urealyticum
DSM 7109]
gi|171851341|emb|CAQ04317.1| translation initiation factor IF-1 [Corynebacterium urealyticum
DSM 7109]
Length=72
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/70 (93%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 4 KDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 63
K+GAIEVEGR++EPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL
Sbjct 3 KEGAIEVEGRIIEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 62
Query 64 SRGRIVYRYK 73
SRGRIVYRYK
Sbjct 63 SRGRIVYRYK 72
>gi|68536852|ref|YP_251557.1| translation initiation factor IF-1 [Corynebacterium jeikeium
K411]
gi|68264451|emb|CAI37939.1| translation initiation factor IF-1 [Corynebacterium jeikeium
K411]
Length=75
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/70 (93%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 4 KDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 63
K+GAIEVEGR+VEPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL
Sbjct 6 KEGAIEVEGRIVEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 65
Query 64 SRGRIVYRYK 73
+RGRIVYRYK
Sbjct 66 TRGRIVYRYK 75
>gi|19551795|ref|NP_599797.1| translation initiation factor IF-1 [Corynebacterium glutamicum
ATCC 13032]
gi|62389450|ref|YP_224852.1| translation initiation factor IF-1 [Corynebacterium glutamicum
ATCC 13032]
gi|145294731|ref|YP_001137552.1| translation initiation factor IF-1 [Corynebacterium glutamicum
R]
19 more sequence titles
Length=72
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/70 (93%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 4 KDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 63
K+GAIEVEGR+VEPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL
Sbjct 3 KEGAIEVEGRIVEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 62
Query 64 SRGRIVYRYK 73
+RGRIVYRYK
Sbjct 63 TRGRIVYRYK 72
>gi|227487078|ref|ZP_03917394.1| translation initiation factor IF-1 [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227093152|gb|EEI28464.1| translation initiation factor IF-1 [Corynebacterium glucuronolyticum
ATCC 51867]
Length=79
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/70 (93%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 4 KDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 63
K+GAIEVEGR+VEPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL
Sbjct 10 KEGAIEVEGRIVEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 69
Query 64 SRGRIVYRYK 73
+RGRIVYRYK
Sbjct 70 TRGRIVYRYK 79
>gi|50955544|ref|YP_062832.1| translation initiation factor IF-1 [Leifsonia xyli subsp. xyli
str. CTCB07]
gi|59797533|sp|Q6AD17.1|IF1_LEIXX RecName: Full=Translation initiation factor IF-1
gi|50952026|gb|AAT89727.1| translation initiation factor IF-1 [Leifsonia xyli subsp. xyli
str. CTCB07]
Length=73
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/73 (88%), Positives = 69/73 (95%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDG IE+EG V+E LPNAMFR+EL NGHKVLAHISGKMRQHYIRILPEDRV+VELSP
Sbjct 1 MAKKDGVIEIEGSVIEALPNAMFRVELTNGHKVLAHISGKMRQHYIRILPEDRVIVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDL+RGRIVYRYK
Sbjct 61 YDLTRGRIVYRYK 73
>gi|227497204|ref|ZP_03927452.1| initiation factor IF1 [Actinomyces urogenitalis DSM 15434]
gi|320533217|ref|ZP_08033931.1| translation initiation factor IF-1 [Actinomyces sp. oral taxon
171 str. F0337]
gi|325068055|ref|ZP_08126728.1| translation initiation factor IF-1 [Actinomyces oris K20]
10 more sequence titles
Length=73
Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/73 (92%), Positives = 68/73 (94%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDG IEVEG VVE LPNAMFR+EL NGH VLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGVIEVEGSVVEALPNAMFRVELSNGHVVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|148273772|ref|YP_001223333.1| translation initiation factor IF-1 [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|170780762|ref|YP_001709094.1| translation initiation factor IF-1 [Clavibacter michiganensis
subsp. sepedonicus]
gi|190359591|sp|A5CU84.1|IF1_CLAM3 RecName: Full=Translation initiation factor IF-1
gi|190359592|sp|B0RB68.1|IF1_CLAMS RecName: Full=Translation initiation factor IF-1
gi|147831702|emb|CAN02671.1| translation initiation factor IF-1 [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|169155330|emb|CAQ00433.1| translation initiation factor IF-1 [Clavibacter michiganensis
subsp. sepedonicus]
Length=73
Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/73 (90%), Positives = 69/73 (95%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDG IE+EG VVE LPNAMFR+EL NGHKVLAHISGKMRQHYIRILPEDRV+VELSP
Sbjct 1 MAKKDGVIEIEGGVVEALPNAMFRVELSNGHKVLAHISGKMRQHYIRILPEDRVIVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDL+RGRIVYRYK
Sbjct 61 YDLTRGRIVYRYK 73
>gi|38233154|ref|NP_938921.1| translation initiation factor IF-1 [Corynebacterium diphtheriae
NCTC 13129]
gi|227505242|ref|ZP_03935291.1| translation initiation factor IF-1 [Corynebacterium striatum
ATCC 6940]
gi|48428195|sp|P61685.1|IF1_CORDI RecName: Full=Translation initiation factor IF-1
gi|38199413|emb|CAE49056.1| translation initiation factor IF-1 [Corynebacterium diphtheriae]
gi|227198141|gb|EEI78189.1| translation initiation factor IF-1 [Corynebacterium striatum
ATCC 6940]
Length=72
Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 64/70 (92%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 4 KDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 63
K+GAIEVEGR++EPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL
Sbjct 3 KEGAIEVEGRIIEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 62
Query 64 SRGRIVYRYK 73
+RGRIVYRYK
Sbjct 63 TRGRIVYRYK 72
>gi|302330095|gb|ADL20289.1| Translation initiation factor IF-1 [Corynebacterium pseudotuberculosis
1002]
gi|341824204|gb|AEK91725.1| Translation initiation factor IF-1 [Corynebacterium pseudotuberculosis
PAT10]
Length=98
Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/70 (92%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 4 KDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 63
K+GAIEVEGR++EPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL
Sbjct 29 KEGAIEVEGRIIEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 88
Query 64 SRGRIVYRYK 73
+RGRIVYRYK
Sbjct 89 NRGRIVYRYK 98
>gi|72163021|ref|YP_290678.1| translation initiation factor IF-1 [Thermobifida fusca YX]
gi|119371136|sp|Q47LL7.1|IF1_THEFY RecName: Full=Translation initiation factor IF-1
gi|71916753|gb|AAZ56655.1| bacterial translation initiation factor 1 (bIF-1) [Thermobifida
fusca YX]
Length=73
Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/73 (88%), Positives = 70/73 (96%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDGAIE+EG V+E LPNAMFR+EL+NGHKVLAHISGKMR HYIRILP+DRVVVELSP
Sbjct 1 MAKKDGAIEIEGTVIESLPNAMFRVELDNGHKVLAHISGKMRMHYIRILPDDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDL+RGRIVYRYK
Sbjct 61 YDLTRGRIVYRYK 73
>gi|184200285|ref|YP_001854492.1| translation initiation factor IF-1 [Kocuria rhizophila DC2201]
gi|183580515|dbj|BAG28986.1| translation initiation factor IF-1 [Kocuria rhizophila DC2201]
Length=73
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/73 (91%), Positives = 68/73 (94%), Gaps = 0/73 (0%)
Query 1 MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
MAKKDG IE+EG VVE LPNA FR+EL NGHKVLAHISGKMRQHYIRILPEDRVVVELSP
Sbjct 1 MAKKDGVIEIEGTVVEALPNASFRVELTNGHKVLAHISGKMRQHYIRILPEDRVVVELSP 60
Query 61 YDLSRGRIVYRYK 73
YDLSRGRIVYRYK
Sbjct 61 YDLSRGRIVYRYK 73
>gi|308275776|gb|ADO25675.1| Translation initiation factor IF-1 [Corynebacterium pseudotuberculosis
I19]
Length=96
Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/70 (92%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 4 KDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 63
K+GAIEVEGR++EPLPNAMFR+EL+NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL
Sbjct 27 KEGAIEVEGRIIEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDL 86
Query 64 SRGRIVYRYK 73
+RGRIVYRYK
Sbjct 87 NRGRIVYRYK 96
Lambda K H
0.322 0.141 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131942442484
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40