BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3465
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610601|ref|NP_217982.1| dTDP-4-dehydrorhamnose 3,5-epimeras... 416 9e-115
gi|289747298|ref|ZP_06506676.1| dtdp-4-dehydrorhamnose 3,5-epime... 415 2e-114
gi|289759628|ref|ZP_06519006.1| dtdp-4-dehydrorhamnose 3,5-epime... 415 2e-114
gi|340628436|ref|YP_004746888.1| dTDP-4-dehydrorhamnose 3,5-epim... 414 3e-114
gi|148824675|ref|YP_001289429.1| dTDP-4-dehydrorhamnose 3,5-epim... 414 3e-114
gi|289576201|ref|ZP_06456428.1| dTDP-4-dehydrorhamnose 3,5-epime... 414 3e-114
gi|38493079|pdb|1UPI|A Chain A, Mycobacterium Tuberculosis Rmlc ... 410 8e-113
gi|289763647|ref|ZP_06523025.1| dTDP-4-dehydrorhamnose 3,5-epime... 405 2e-111
gi|296168674|ref|ZP_06850423.1| dTDP-4-dehydrorhamnose 3,5-epime... 363 8e-99
gi|240167774|ref|ZP_04746433.1| putative dTDP-4-dehydrorhamnose ... 360 8e-98
gi|2326951|gb|AAB66649.1| RmlC [Mycobacterium tuberculosis] 350 9e-95
gi|183981101|ref|YP_001849392.1| dTDP-4-dehydrorhamnose 3,5-epim... 348 3e-94
gi|254819210|ref|ZP_05224211.1| dTDP-4-dehydrorhamnose 3,5-epime... 347 5e-94
gi|118616616|ref|YP_904948.1| dTDP-4-dehydrorhamnose 3,5-epimera... 347 5e-94
gi|342861858|ref|ZP_08718503.1| dTDP-4-dehydrorhamnose 3,5-epime... 347 7e-94
gi|254776839|ref|ZP_05218355.1| dTDP-4-dehydrorhamnose 3,5-epime... 345 2e-93
gi|118467223|ref|YP_883542.1| dTDP-4-dehydrorhamnose 3,5-epimera... 345 3e-93
gi|41410322|ref|NP_963158.1| RmlC [Mycobacterium avium subsp. pa... 341 3e-92
gi|15828066|ref|NP_302329.1| dTDP-4-dehydrorhamnose 3,5-epimeras... 326 1e-87
gi|108798038|ref|YP_638235.1| dTDP-4-dehydrorhamnose 3,5-epimera... 283 8e-75
gi|333991928|ref|YP_004524542.1| dTDP-4-dehydrorhamnose 35-epime... 283 1e-74
gi|118469056|ref|YP_885893.1| dTDP-4-dehydrorhamnose 3,5-epimera... 276 1e-72
gi|120402375|ref|YP_952204.1| dTDP-4-dehydrorhamnose 3,5-epimera... 253 9e-66
gi|334337853|ref|YP_004543005.1| dTDP-4-dehydrorhamnose 3,5-epim... 249 2e-64
gi|325675109|ref|ZP_08154795.1| dTDP-4-dehydrorhamnose 3,5-epime... 246 1e-63
gi|312137739|ref|YP_004005075.1| dtdp-4-dehydrorhamnose 3,5-epim... 246 2e-63
gi|269957344|ref|YP_003327133.1| dTDP-4-dehydrorhamnose 3,5-epim... 244 4e-63
gi|296130190|ref|YP_003637440.1| dTDP-4-dehydrorhamnose 3,5-epim... 243 1e-62
gi|169630860|ref|YP_001704509.1| dTDP-4-dehydrorhamnose 3,5-epim... 239 2e-61
gi|226303737|ref|YP_002763695.1| dTDP-6-deoxy-D-xylo-4-hexulose ... 239 2e-61
gi|332671010|ref|YP_004454018.1| dTDP-4-dehydrorhamnose 3,5-epim... 234 4e-60
gi|269794231|ref|YP_003313686.1| dTDP-4-dehydrorhamnose 3,5-epim... 234 4e-60
gi|325673208|ref|ZP_08152901.1| dTDP-4-dehydrorhamnose 3,5-epime... 234 6e-60
gi|269219067|ref|ZP_06162921.1| dTDP-4-dehydrorhamnose 3,5-epime... 234 7e-60
gi|315502242|ref|YP_004081129.1| dTDP-4-dehydrorhamnose 3,5-epim... 229 2e-58
gi|302865678|ref|YP_003834315.1| dTDP-4-dehydrorhamnose 3,5-epim... 229 2e-58
gi|297194408|ref|ZP_06911806.1| dTDP-4-dehydrorhamnose 3,5-epime... 228 4e-58
gi|238560602|gb|ACR46366.1| TDP-4-dehydrorhamnose 3,5-epimerase ... 227 7e-58
gi|315654769|ref|ZP_07907674.1| dTDP-4-dehydrorhamnose 3,5-epime... 222 2e-56
gi|315657310|ref|ZP_07910192.1| dTDP-4-dehydrorhamnose 3,5-epime... 222 3e-56
gi|343924256|ref|ZP_08763816.1| dTDP-6-deoxy-D-xylo-4-hexulose 3... 222 3e-56
gi|111225335|ref|YP_716129.1| dTDP-4-dehydrorhamnose 3,5-epimera... 222 3e-56
gi|111021079|ref|YP_704051.1| dTDP-4-dehydrorhamnose 3,5-epimera... 221 5e-56
gi|158056586|emb|CAP11386.1| 3,5-epimerase [Streptomyces olivaceus] 220 8e-56
gi|227875184|ref|ZP_03993326.1| dTDP-4-dehydrorhamnose 3,5-epime... 219 1e-55
gi|298346186|ref|YP_003718873.1| dTDP-4-dehydrorhamnose 3,5-epim... 219 1e-55
gi|226363369|ref|YP_002781151.1| dTDP-6-deoxy-D-xylo-4-hexulose ... 219 2e-55
gi|271962204|ref|YP_003336400.1| dTDP-4-dehydrorhamnose 3,5-epim... 218 3e-55
gi|269978074|ref|ZP_06185024.1| dTDP-4-dehydrorhamnose 3,5-epime... 218 4e-55
gi|326383444|ref|ZP_08205131.1| dTDP-4-dehydrorhamnose 3,5-epime... 218 5e-55
>gi|15610601|ref|NP_217982.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Mycobacterium tuberculosis
H37Rv]
gi|15843060|ref|NP_338097.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
CDC1551]
gi|31794641|ref|NP_857134.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Mycobacterium bovis
AF2122/97]
69 more sequence titles
gi|121639385|ref|YP_979609.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|148663330|ref|YP_001284853.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
H37Ra]
gi|167966768|ref|ZP_02549045.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
H37Ra]
gi|224991881|ref|YP_002646570.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
bovis BCG str. Tokyo 172]
gi|253800510|ref|YP_003033511.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
KZN 1435]
gi|254234056|ref|ZP_04927381.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
C]
gi|254366066|ref|ZP_04982111.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
str. Haarlem]
gi|254552569|ref|ZP_05143016.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289445065|ref|ZP_06434809.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
T46]
gi|289449169|ref|ZP_06438913.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
CPHL_A]
gi|289555735|ref|ZP_06444945.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
KZN 605]
gi|289571698|ref|ZP_06451925.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
T17]
gi|289752189|ref|ZP_06511567.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
T92]
gi|289755598|ref|ZP_06514976.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
EAS054]
gi|297636124|ref|ZP_06953904.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
KZN 4207]
gi|297733124|ref|ZP_06962242.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
KZN R506]
gi|298526949|ref|ZP_07014358.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
94_M4241A]
gi|306777813|ref|ZP_07416150.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu001]
gi|306782531|ref|ZP_07420868.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu002]
gi|306786350|ref|ZP_07424672.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu003]
gi|306790719|ref|ZP_07429041.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu004]
gi|306795248|ref|ZP_07433550.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu005]
gi|306799437|ref|ZP_07437739.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu006]
gi|306805284|ref|ZP_07441952.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu008]
gi|306809469|ref|ZP_07446137.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu007]
gi|306969577|ref|ZP_07482238.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu009]
gi|306973931|ref|ZP_07486592.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu010]
gi|307081640|ref|ZP_07490810.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu011]
gi|307086246|ref|ZP_07495359.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu012]
gi|313660455|ref|ZP_07817335.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
KZN V2475]
gi|81668709|sp|O06330.1|RMLC_MYCTU RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase; AltName:
Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase; AltName:
Full=dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; AltName:
Full=dTDP-L-rhamnose synthase
gi|40889319|pdb|1PM7|A Chain A, Rmlc (Dtdp-6-Deoxy-D-Xylo-4-Hexulose 3,5-Epimerase)
Structure From Mycobacterium Tuberculosis And Inhibitor Design.
The Apo Structure.
gi|40889320|pdb|1PM7|B Chain B, Rmlc (Dtdp-6-Deoxy-D-Xylo-4-Hexulose 3,5-Epimerase)
Structure From Mycobacterium Tuberculosis And Inhibitor Design.
The Apo Structure.
gi|118138539|pdb|2IXC|A Chain A, Rmlc M. Tuberculosis With Dtdp-Rhamnose
gi|118138540|pdb|2IXC|B Chain B, Rmlc M. Tuberculosis With Dtdp-Rhamnose
gi|118138541|pdb|2IXC|C Chain C, Rmlc M. Tuberculosis With Dtdp-Rhamnose
gi|118138542|pdb|2IXC|D Chain D, Rmlc M. Tuberculosis With Dtdp-Rhamnose
gi|2104388|emb|CAB08731.1| dTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE RMLC (dTDP-4-KETO-6-DEOXYGLUCOSE
3,5-EPIMERASE) (dTDP-L-RHAMNOSE SYNTHETASE) (THYMIDINE
DIPHOSPHO-4-KETO-RHAMNOSE 3,5-EPIMERASE) [Mycobacterium
tuberculosis H37Rv]
gi|13883404|gb|AAK47911.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
CDC1551]
gi|31620238|emb|CAD95681.1| PROBABLE DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE RMLC (DTDP-4-KETO-6-DEOXYGLUCOSE
3,5-EPIMERASE) (DTDP-L-RHAMNOSE SYNTHETASE)
(THYMIDINE DIPHOSPHO-4-KETORHAMNOSE 3,5-EPIMERASE) [Mycobacterium
bovis AF2122/97]
gi|121495033|emb|CAL73519.1| Probable dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|124599585|gb|EAY58689.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
C]
gi|134151579|gb|EBA43624.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
str. Haarlem]
gi|148507482|gb|ABQ75291.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
H37Ra]
gi|224774996|dbj|BAH27802.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
bovis BCG str. Tokyo 172]
gi|253322013|gb|ACT26616.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
KZN 1435]
gi|289417984|gb|EFD15224.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
T46]
gi|289422127|gb|EFD19328.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
CPHL_A]
gi|289440367|gb|EFD22860.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
KZN 605]
gi|289545452|gb|EFD49100.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
T17]
gi|289692776|gb|EFD60205.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
T92]
gi|289696185|gb|EFD63614.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
EAS054]
gi|298496743|gb|EFI32037.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
94_M4241A]
gi|308213897|gb|EFO73296.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu001]
gi|308324848|gb|EFP13699.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu002]
gi|308329102|gb|EFP17953.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu003]
gi|308332910|gb|EFP21761.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu004]
gi|308336570|gb|EFP25421.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu005]
gi|308340445|gb|EFP29296.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu006]
gi|308344309|gb|EFP33160.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu007]
gi|308348200|gb|EFP37051.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu008]
gi|308352924|gb|EFP41775.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu009]
gi|308356767|gb|EFP45618.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu010]
gi|308360712|gb|EFP49563.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu011]
gi|308364327|gb|EFP53178.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
SUMu012]
gi|323717949|gb|EGB27138.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
CDC1551A]
gi|328460241|gb|AEB05664.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
KZN 4207]
gi|341603406|emb|CCC66087.1| probable dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium
bovis BCG str. Moreau RDJ]
gi|344221301|gb|AEN01932.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Mycobacterium tuberculosis
CTRI-2]
Length=202
Score = 416 bits (1069), Expect = 9e-115, Method: Compositional matrix adjust.
Identities = 202/202 (100%), Positives = 202/202 (100%), Gaps = 0/202 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG
Sbjct 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG
Sbjct 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV
Sbjct 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
Query 181 RASGLLPRWEQTQRFIGEMRGT 202
RASGLLPRWEQTQRFIGEMRGT
Sbjct 181 RASGLLPRWEQTQRFIGEMRGT 202
>gi|289747298|ref|ZP_06506676.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Mycobacterium tuberculosis
02_1987]
gi|289687826|gb|EFD55314.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Mycobacterium tuberculosis
02_1987]
Length=202
Score = 415 bits (1067), Expect = 2e-114, Method: Compositional matrix adjust.
Identities = 201/202 (99%), Positives = 202/202 (100%), Gaps = 0/202 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG
Sbjct 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG
Sbjct 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLV+GAAPSLSDRDAAAPSFEDV
Sbjct 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVNGAAPSLSDRDAAAPSFEDV 180
Query 181 RASGLLPRWEQTQRFIGEMRGT 202
RASGLLPRWEQTQRFIGEMRGT
Sbjct 181 RASGLLPRWEQTQRFIGEMRGT 202
>gi|289759628|ref|ZP_06519006.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Mycobacterium tuberculosis
T85]
gi|294995761|ref|ZP_06801452.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
210]
gi|289715192|gb|EFD79204.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Mycobacterium tuberculosis
T85]
gi|326905311|gb|EGE52244.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
W-148]
gi|339296286|gb|AEJ48397.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
CCDC5079]
gi|339299889|gb|AEJ51999.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
CCDC5180]
Length=202
Score = 415 bits (1066), Expect = 2e-114, Method: Compositional matrix adjust.
Identities = 201/202 (99%), Positives = 202/202 (100%), Gaps = 0/202 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG
Sbjct 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVS+GLAHG
Sbjct 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSDGLAHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV
Sbjct 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
Query 181 RASGLLPRWEQTQRFIGEMRGT 202
RASGLLPRWEQTQRFIGEMRGT
Sbjct 181 RASGLLPRWEQTQRFIGEMRGT 202
>gi|340628436|ref|YP_004746888.1| dTDP-4-dehydrorhamnose 3,5-epimerase RMLC [Mycobacterium canettii
CIPT 140010059]
gi|340006626|emb|CCC45813.1| dTDP-4-dehydrorhamnose 3,5-epimerase RMLC (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase) (thymidine
diphospho-4-keto-rhamnose 3,5-epimerase) [Mycobacterium
canettii CIPT 140010059]
Length=202
Score = 414 bits (1065), Expect = 3e-114, Method: Compositional matrix adjust.
Identities = 201/202 (99%), Positives = 201/202 (99%), Gaps = 0/202 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG
Sbjct 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQLPP QAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG
Sbjct 61 LHFAQLPPGQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV
Sbjct 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
Query 181 RASGLLPRWEQTQRFIGEMRGT 202
RASGLLPRWEQTQRFIGEMRGT
Sbjct 181 RASGLLPRWEQTQRFIGEMRGT 202
>gi|148824675|ref|YP_001289429.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
F11]
gi|148723202|gb|ABR07827.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
F11]
Length=202
Score = 414 bits (1065), Expect = 3e-114, Method: Compositional matrix adjust.
Identities = 201/202 (99%), Positives = 202/202 (100%), Gaps = 0/202 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG
Sbjct 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG
Sbjct 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTV+YLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV
Sbjct 121 FLALQDNSTVIYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
Query 181 RASGLLPRWEQTQRFIGEMRGT 202
RASGLLPRWEQTQRFIGEMRGT
Sbjct 181 RASGLLPRWEQTQRFIGEMRGT 202
>gi|289576201|ref|ZP_06456428.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
K85]
gi|339633470|ref|YP_004725112.1| dTDP-4-dehydrorhamnose 3,5-epimerase RMLC (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) [Mycobacterium africanum GM041182]
gi|289540632|gb|EFD45210.1| dTDP-4-dehydrorhamnose 3,5-epimerase rmlC [Mycobacterium tuberculosis
K85]
gi|339332826|emb|CCC28549.1| dTDP-4-dehydrorhamnose 3,5-epimerase RMLC (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) [Mycobacterium africanum GM041182]
Length=202
Score = 414 bits (1065), Expect = 3e-114, Method: Compositional matrix adjust.
Identities = 201/202 (99%), Positives = 201/202 (99%), Gaps = 0/202 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG
Sbjct 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG
Sbjct 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYLCSAEYNPQREHTICA DPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV
Sbjct 121 FLALQDNSTVMYLCSAEYNPQREHTICAADPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
Query 181 RASGLLPRWEQTQRFIGEMRGT 202
RASGLLPRWEQTQRFIGEMRGT
Sbjct 181 RASGLLPRWEQTQRFIGEMRGT 202
>gi|38493079|pdb|1UPI|A Chain A, Mycobacterium Tuberculosis Rmlc Epimerase (Rv3465)
Length=225
Score = 410 bits (1053), Expect = 8e-113, Method: Compositional matrix adjust.
Identities = 200/202 (99%), Positives = 200/202 (99%), Gaps = 0/202 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG
Sbjct 21 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 80
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG
Sbjct 81 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 140
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYL SAEYNPQREHTI ATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV
Sbjct 141 FLALQDNSTVMYLXSAEYNPQREHTIXATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 200
Query 181 RASGLLPRWEQTQRFIGEMRGT 202
RASGLLPRWEQTQRFIGEMRGT
Sbjct 201 RASGLLPRWEQTQRFIGEMRGT 222
>gi|289763647|ref|ZP_06523025.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
GM 1503]
gi|289711153|gb|EFD75169.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium tuberculosis
GM 1503]
Length=205
Score = 405 bits (1041), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 197/197 (100%), Positives = 197/197 (100%), Gaps = 0/197 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG
Sbjct 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG
Sbjct 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV
Sbjct 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
Query 181 RASGLLPRWEQTQRFIG 197
RASGLLPRWEQTQRFIG
Sbjct 181 RASGLLPRWEQTQRFIG 197
>gi|296168674|ref|ZP_06850423.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896583|gb|EFG76224.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=203
Score = 363 bits (932), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 172/200 (86%), Positives = 184/200 (92%), Gaps = 0/200 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MK REL +PGAWEITPTIH DSRGLFFEWLTDHGF FAGH LDVRQ NCSVSSAGVLRG
Sbjct 2 MKVRELAIPGAWEITPTIHGDSRGLFFEWLTDHGFTEFAGHRLDVRQANCSVSSAGVLRG 61
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQLPPSQAKYVTCV GSVFDVVVDIREGSPTFG+WDSVLLDD+DRRTIY+SEGLAHG
Sbjct 62 LHFAQLPPSQAKYVTCVRGSVFDVVVDIREGSPTFGQWDSVLLDDKDRRTIYLSEGLAHG 121
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQD+STVMYLCSAEYNPQRE TICATDP + VDWPLV+GAAP+LSDRDAAAP FE+V
Sbjct 122 FLALQDDSTVMYLCSAEYNPQRERTICATDPAIGVDWPLVNGAAPTLSDRDAAAPMFEEV 181
Query 181 RASGLLPRWEQTQRFIGEMR 200
RA+GLLP W++TQ FI MR
Sbjct 182 RAAGLLPSWQETQAFIAGMR 201
>gi|240167774|ref|ZP_04746433.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
kansasii ATCC 12478]
Length=202
Score = 360 bits (923), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 168/201 (84%), Positives = 185/201 (93%), Gaps = 0/201 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MK RELD+PGAWEITPTIH DSRGLFFEWLT+ GF AFAGH LDVRQ NCSVS+AGVLRG
Sbjct 1 MKVRELDIPGAWEITPTIHGDSRGLFFEWLTERGFSAFAGHRLDVRQANCSVSAAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFA+LPPSQAKYVTCVSGSVFDVVVDIR GSPTFGRWD+V+LDD DRR++Y+SEGLAHG
Sbjct 61 LHFAELPPSQAKYVTCVSGSVFDVVVDIRLGSPTFGRWDAVVLDDVDRRSVYISEGLAHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYLCSAEYNPQREHTICATDPTLA+DWPLVDG A SLSDRDAAAPS ++V
Sbjct 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAIDWPLVDGVAASLSDRDAAAPSLQEV 180
Query 181 RASGLLPRWEQTQRFIGEMRG 201
RASG+LP W T++F+ +RG
Sbjct 181 RASGVLPTWAATRKFVDALRG 201
>gi|2326951|gb|AAB66649.1| RmlC [Mycobacterium tuberculosis]
Length=203
Score = 350 bits (897), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 176/201 (88%), Positives = 180/201 (90%), Gaps = 1/201 (0%)
Query 2 KARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGL 61
+ RELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGL
Sbjct 4 EPRELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGL 63
Query 62 HFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGF 121
HFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQD R IYVS+GLAHGF
Sbjct 64 HFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQD-RNIYVSDGLAHGF 122
Query 122 LALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVR 181
LALQDNSTVMYLCSAEYNPQR+HTICATDPTLA DG PSLSDRDAAAPSFE+
Sbjct 123 LALQDNSTVMYLCSAEYNPQRQHTICATDPTLASIRRWSDGGCPSLSDRDAAAPSFEEDV 182
Query 182 ASGLLPRWEQTQRFIGEMRGT 202
GLLP RFIGEMRGT
Sbjct 183 RRGLLPGGTDVSRFIGEMRGT 203
>gi|183981101|ref|YP_001849392.1| dTDP-4-dehydrorhamnose 3,5-epimerase, RmlC [Mycobacterium marinum
M]
gi|183174427|gb|ACC39537.1| dTDP-4-dehydrorhamnose 3,5-epimerase, RmlC [Mycobacterium marinum
M]
Length=201
Score = 348 bits (893), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 167/202 (83%), Positives = 183/202 (91%), Gaps = 1/202 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+AREL VPGAWEITPTIH DSRG+FFEWLTD GF AF GH DVRQ NCSVSSAGVLRG
Sbjct 1 MQARELKVPGAWEITPTIHGDSRGMFFEWLTDSGFTAFCGHRFDVRQANCSVSSAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFA+LPPSQAKYVTCVSG+VFDVVVDIR GSPTFG+WDSVLLDD+ R+IY+SEGLAHG
Sbjct 61 LHFAELPPSQAKYVTCVSGAVFDVVVDIRLGSPTFGQWDSVLLDDR-HRSIYISEGLAHG 119
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQD STVMY+CSAEYNPQREHTICATDP LA+DWPLVDGA PSLS+RDAAA S ++V
Sbjct 120 FLALQDKSTVMYMCSAEYNPQREHTICATDPELAIDWPLVDGAPPSLSERDAAAGSLDEV 179
Query 181 RASGLLPRWEQTQRFIGEMRGT 202
RASG+LP WE+TQRFI +RGT
Sbjct 180 RASGVLPTWEETQRFIDGLRGT 201
>gi|254819210|ref|ZP_05224211.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium intracellulare
ATCC 13950]
Length=209
Score = 347 bits (890), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 163/200 (82%), Positives = 178/200 (89%), Gaps = 0/200 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
++ REL VPGAWEITP +H DSRG FFEWLTD GFR+FAGH LDVRQ NCSVSSAGVLRG
Sbjct 5 VEVRELKVPGAWEITPAVHGDSRGHFFEWLTDKGFRSFAGHRLDVRQANCSVSSAGVLRG 64
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQ+PPSQAKYVTCV G+VFDVVVDIR GSPTFG+WDSVLLDD + RTIY+SEGL HG
Sbjct 65 LHFAQVPPSQAKYVTCVRGAVFDVVVDIRVGSPTFGQWDSVLLDDTEHRTIYISEGLGHG 124
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYLCSAEYNPQREHTICATDP L +DWPLVDGA P+LSDRDAAAPS +DV
Sbjct 125 FLALQDNSTVMYLCSAEYNPQREHTICATDPALGIDWPLVDGAPPTLSDRDAAAPSLDDV 184
Query 181 RASGLLPRWEQTQRFIGEMR 200
RASGLLP WE+T F+ +R
Sbjct 185 RASGLLPTWEETNAFVEGLR 204
>gi|118616616|ref|YP_904948.1| dTDP-4-dehydrorhamnose 3,5-epimerase, RmlC [Mycobacterium ulcerans
Agy99]
gi|118568726|gb|ABL03477.1| dTDP-4-dehydrorhamnose 3,5-epimerase, RmlC [Mycobacterium ulcerans
Agy99]
Length=201
Score = 347 bits (890), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 166/202 (83%), Positives = 183/202 (91%), Gaps = 1/202 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+AREL VPGAWEITPTIH DSRG+FFEWLTD GF AF GH DVRQ NCSVSSAGVLRG
Sbjct 1 MQARELKVPGAWEITPTIHGDSRGMFFEWLTDSGFTAFCGHRFDVRQANCSVSSAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFA+LPPSQ+KYVTCVSG+VFDVVVDIR GSPTFG+WDSVLLDD+ R+IY+SEGLAHG
Sbjct 61 LHFAELPPSQSKYVTCVSGAVFDVVVDIRLGSPTFGQWDSVLLDDR-HRSIYISEGLAHG 119
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQD STVMY+CSAEYNPQREHTICATDP LA+DWPLVDGA PSLS+RDAAA S ++V
Sbjct 120 FLALQDKSTVMYMCSAEYNPQREHTICATDPELAIDWPLVDGAPPSLSERDAAAGSLDEV 179
Query 181 RASGLLPRWEQTQRFIGEMRGT 202
RASG+LP WE+TQRFI +RGT
Sbjct 180 RASGVLPTWEETQRFIDGLRGT 201
>gi|342861858|ref|ZP_08718503.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium colombiense
CECT 3035]
gi|342130675|gb|EGT83979.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium colombiense
CECT 3035]
Length=201
Score = 347 bits (889), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 166/201 (83%), Positives = 179/201 (90%), Gaps = 0/201 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M REL VPGAWEITP +H DSRG FFEWLTD GFR+FAGH LDVRQ NCSVSSAGVLRG
Sbjct 1 MDVRELKVPGAWEITPAVHGDSRGHFFEWLTDKGFRSFAGHRLDVRQANCSVSSAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFA++PPSQAKYVTCV GSVFDVVVDIR GSPTFG+WDSVLLDD D RTIY+SEGL HG
Sbjct 61 LHFAEVPPSQAKYVTCVRGSVFDVVVDIRVGSPTFGQWDSVLLDDTDHRTIYLSEGLGHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYLCSAEYNPQREHTI ATDP LA+DWPLVDGA P+LSDRDAAAPS E+V
Sbjct 121 FLALQDNSTVMYLCSAEYNPQREHTIRATDPALAIDWPLVDGAPPNLSDRDAAAPSLEEV 180
Query 181 RASGLLPRWEQTQRFIGEMRG 201
RASGLLP W++T+ FI +RG
Sbjct 181 RASGLLPTWDETKAFIDGLRG 201
>gi|254776839|ref|ZP_05218355.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium avium subsp.
avium ATCC 25291]
gi|336460712|gb|EGO39602.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium avium subsp.
paratuberculosis S397]
Length=201
Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 163/196 (84%), Positives = 176/196 (90%), Gaps = 0/196 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M AREL VPGAWEITPT+H D+RG FFEWLTD GFR+FAGH LDVRQ NCSVS+AGVLRG
Sbjct 1 MSARELKVPGAWEITPTVHGDARGHFFEWLTDKGFRSFAGHRLDVRQANCSVSAAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQ+PPSQAKYVTCV GSVFDVVVDIR GSPTFG+WDSVLLDD + RTIY+SEGL HG
Sbjct 61 LHFAQVPPSQAKYVTCVRGSVFDVVVDIRVGSPTFGQWDSVLLDDAEHRTIYISEGLGHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYLCSAEYNP REHTICATDP L +DWPLV GAAP+LS+RDAAAPS E+V
Sbjct 121 FLALQDNSTVMYLCSAEYNPGREHTICATDPALGIDWPLVAGAAPTLSERDAAAPSLEEV 180
Query 181 RASGLLPRWEQTQRFI 196
RASGLLP W +TQ FI
Sbjct 181 RASGLLPTWAETQAFI 196
>gi|118467223|ref|YP_883542.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium avium 104]
gi|118168510|gb|ABK69407.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium avium 104]
Length=201
Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 162/196 (83%), Positives = 176/196 (90%), Gaps = 0/196 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M AREL +PGAWEITPT+H D+RG FFEWLTD GFR+FAGH LDVRQ NCSVS+AGVLRG
Sbjct 1 MSARELKIPGAWEITPTVHGDARGHFFEWLTDKGFRSFAGHRLDVRQANCSVSAAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQ+PPSQAKYVTCV GSVFDVVVDIR GSPTFG+WDSVLLDD + RTIY+SEGL HG
Sbjct 61 LHFAQVPPSQAKYVTCVRGSVFDVVVDIRVGSPTFGQWDSVLLDDAEHRTIYISEGLGHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYLCSAEYNP REHTICATDP L +DWPLV GAAP+LS+RDAAAPS E+V
Sbjct 121 FLALQDNSTVMYLCSAEYNPGREHTICATDPALGIDWPLVAGAAPTLSERDAAAPSLEEV 180
Query 181 RASGLLPRWEQTQRFI 196
RASGLLP W +TQ FI
Sbjct 181 RASGLLPTWAETQAFI 196
>gi|41410322|ref|NP_963158.1| RmlC [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41399156|gb|AAS06774.1| RmlC [Mycobacterium avium subsp. paratuberculosis K-10]
Length=201
Score = 341 bits (875), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 162/196 (83%), Positives = 175/196 (90%), Gaps = 0/196 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M AREL VPGAWEITPT+H D+RG FFEWLTD GFR+FAGH LDVRQ NCSVS+AGVLRG
Sbjct 1 MSARELKVPGAWEITPTVHGDARGHFFEWLTDKGFRSFAGHRLDVRQANCSVSAAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQ+P SQAKYVTCV GSVFDVVVDIR GSPTFG+WDSVLLDD + RTIY+SEGL HG
Sbjct 61 LHFAQVPLSQAKYVTCVRGSVFDVVVDIRVGSPTFGQWDSVLLDDAEHRTIYISEGLGHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYLCSAEYNP REHTICATDP L +DWPLV GAAP+LS+RDAAAPS E+V
Sbjct 121 FLALQDNSTVMYLCSAEYNPGREHTICATDPALGIDWPLVAGAAPTLSERDAAAPSLEEV 180
Query 181 RASGLLPRWEQTQRFI 196
RASGLLP W +TQ FI
Sbjct 181 RASGLLPTWAETQAFI 196
>gi|15828066|ref|NP_302329.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium leprae TN]
gi|221230543|ref|YP_002503959.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium leprae Br4923]
gi|4539119|emb|CAB39840.1| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium
leprae]
gi|13093620|emb|CAC30920.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium leprae]
gi|219933650|emb|CAR72062.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium leprae Br4923]
Length=202
Score = 326 bits (835), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 150/199 (76%), Positives = 168/199 (85%), Gaps = 0/199 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M +ELD+ GAWEITPTIH DSRG+FFEWLT F AF GH LDVRQ NCSVSSAGVLRG
Sbjct 1 MNVKELDISGAWEITPTIHSDSRGMFFEWLTASRFSAFTGHRLDVRQANCSVSSAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQ+PPSQAKYVTCV+GSVFDVVVDIR GSPTFG W S+ L+D +R+TIY+SE LAHG
Sbjct 61 LHFAQVPPSQAKYVTCVTGSVFDVVVDIRLGSPTFGCWTSITLNDSNRKTIYISESLAHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQDNSTVMYLCSAEYNP REH ICATDP LA+DWP+VDG LS RDA AP+ +D+
Sbjct 121 FLALQDNSTVMYLCSAEYNPAREHAICATDPDLAIDWPVVDGVDTHLSKRDATAPNLDDI 180
Query 181 RASGLLPRWEQTQRFIGEM 199
RASGLLP W++TQ FI +
Sbjct 181 RASGLLPTWDETQNFIANL 199
>gi|108798038|ref|YP_638235.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. MCS]
gi|119867133|ref|YP_937085.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. KMS]
gi|126433699|ref|YP_001069390.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. JLS]
gi|108768457|gb|ABG07179.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. MCS]
gi|119693222|gb|ABL90295.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. KMS]
gi|126233499|gb|ABN96899.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium sp. JLS]
Length=195
Score = 283 bits (725), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 137/190 (73%), Positives = 153/190 (81%), Gaps = 2/190 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M AREL VPGAWEITPT+H DSRG F EW TD F AFAGH LDVRQ NCSVS AGVLRG
Sbjct 1 MSARELAVPGAWEITPTVHADSRGSFMEWFTDREFTAFAGHRLDVRQANCSVSRAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFA +PP QAKYVTCV G+VFDV VDIR GSPTFGRWD+VLLDD+DRR+IY+SEGL H
Sbjct 61 LHFAAVPPGQAKYVTCVRGAVFDVAVDIRVGSPTFGRWDAVLLDDRDRRSIYLSEGLGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQD+STVMYLCS Y+P REHT+ TDP L ++WP DG LSDRDAAAP+ +
Sbjct 121 FLALQDDSTVMYLCSTGYDPAREHTVSPTDPALGIEWPF-DGEL-VLSDRDAAAPTLDQA 178
Query 181 RASGLLPRWE 190
R +GLLP W+
Sbjct 179 RDAGLLPTWD 188
>gi|333991928|ref|YP_004524542.1| dTDP-4-dehydrorhamnose 35-epimerase RmlC [Mycobacterium sp. JDM601]
gi|333487896|gb|AEF37288.1| dTDP-4-dehydrorhamnose 35-epimerase RmlC [Mycobacterium sp. JDM601]
Length=190
Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/191 (70%), Positives = 156/191 (82%), Gaps = 2/191 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M REL VPGAWE+TPT H D+RG+FFEW TD F FAGH D+RQ NCSVS AGVLRG
Sbjct 1 MAFRELAVPGAWELTPTQHADARGVFFEWFTDREFTGFAGHRFDLRQANCSVSRAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
LHFAQ PP QAKYVTCV+GSVFDVVVD+R GSPT+GRWD+VLLD +DRR++Y++ GLAHG
Sbjct 61 LHFAQPPPGQAKYVTCVTGSVFDVVVDVRAGSPTYGRWDAVLLDARDRRSVYIAAGLAHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLALQD+STVMYLCSAEY+PQREHTI ATDP + +DWP +S+RD AP+ +V
Sbjct 121 FLALQDDSTVMYLCSAEYDPQREHTISATDPAIGIDWPADHPLV--VSERDREAPTLAEV 178
Query 181 RASGLLPRWEQ 191
RA+GLLP W+Q
Sbjct 179 RAAGLLPVWDQ 189
>gi|118469056|ref|YP_885893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium smegmatis
str. MC2 155]
gi|310947299|sp|A0QSK5.1|RMLC_MYCS2 RecName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; AltName:
Full=Thymidine diphospho-4-keto-rhamnose 3,5-epimerase; AltName:
Full=dTDP-4-keto-6-deoxyglucose 3,5-epimerase; AltName:
Full=dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; AltName:
Full=dTDP-L-rhamnose synthase
gi|118170343|gb|ABK71239.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium smegmatis
str. MC2 155]
Length=201
Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/200 (67%), Positives = 155/200 (78%), Gaps = 4/200 (2%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M AREL + GAWEITP + DSRGLFFEW TD GF FAGH D+RQ NCSVS+ GVLRG
Sbjct 1 MTARELSIAGAWEITPVLRTDSRGLFFEWFTDAGFTEFAGHQFDMRQANCSVSARGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFAQ+PPSQAKYVTCV G+VFDVVVDIR GSPTFG+WD+VLLDD+DRR+IY+SEGL H
Sbjct 61 VHFAQVPPSQAKYVTCVRGAVFDVVVDIRVGSPTFGQWDAVLLDDKDRRSIYISEGLGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
FLAL D+STVMYLCSA Y PQREHT+ TD ++WP V LSDRDA APS +
Sbjct 121 FLALDDDSTVMYLCSAPYAPQREHTVRPTD--FGIEWPEVPELI--LSDRDAQAPSLAEA 176
Query 181 RASGLLPRWEQTQRFIGEMR 200
+A+G+LP W Q F+ +R
Sbjct 177 QAAGVLPTWADCQAFVETLR 196
>gi|120402375|ref|YP_952204.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium vanbaalenii
PYR-1]
gi|119955193|gb|ABM12198.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mycobacterium vanbaalenii
PYR-1]
Length=207
Score = 253 bits (647), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 135/208 (65%), Positives = 155/208 (75%), Gaps = 12/208 (5%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M REL +PGAWEITP +H D+RG FFEW TD GF A GH LD+RQ NCSVS AGVLRG
Sbjct 1 MNVRELTIPGAWEITPVVHTDARGAFFEWFTDAGFTAITGHRLDLRQANCSVSRAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFAQLPPSQAKYV+CV G+V DVVVDIR GSPTFGRWD+V+LDD+ R++Y+SEGL H
Sbjct 61 VHFAQLPPSQAKYVSCVRGAVVDVVVDIRVGSPTFGRWDAVVLDDETHRSVYLSEGLGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPS--------LSDRDA 172
FLAL D+S V YLCSA Y+P REHTI DP L +DW A PS LSDRD
Sbjct 121 FLALHDDSVVTYLCSAGYDPAREHTIDPLDPALEIDW----NAWPSRAADGELILSDRDR 176
Query 173 AAPSFEDVRASGLLPRWEQTQRFIGEMR 200
AAPS E R SGLLP WEQT++F+ +R
Sbjct 177 AAPSLEQARTSGLLPTWEQTKKFVDGLR 204
>gi|334337853|ref|YP_004543005.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Isoptericola variabilis
225]
gi|334108221|gb|AEG45111.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Isoptericola variabilis
225]
Length=205
Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/204 (59%), Positives = 144/204 (71%), Gaps = 4/204 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+ REL VPGA+EITP D RG+F EW F GH LD++Q NCSVSSAGVLRG
Sbjct 1 MQYRELAVPGAFEITPKQFGDPRGVFLEWFKAAAFEEALGHPLDLQQANCSVSSAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PP QAKYVTC G+V DVVVDIR GSPTFGRWDSVLLDD DRR IY+ EGL H
Sbjct 61 IHFADVPPGQAKYVTCAKGAVLDVVVDIRVGSPTFGRWDSVLLDDTDRRAIYLGEGLGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLV--DGA--APSLSDRDAAAPS 176
F+AL+D STVMY+CS YNP REH + DP + +DWP DG+ +P LS++D AAP+
Sbjct 121 FMALEDGSTVMYMCSTGYNPGREHGVHPLDPAIGIDWPTTARDGSPLSPLLSEKDEAAPT 180
Query 177 FEDVRASGLLPRWEQTQRFIGEMR 200
++ A GLLP E ++ +R
Sbjct 181 LDEAAAQGLLPTAEAVDEYVRSLR 204
>gi|325675109|ref|ZP_08154795.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus equi ATCC 33707]
gi|325554070|gb|EGD23746.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus equi ATCC 33707]
Length=201
Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 117/195 (60%), Positives = 147/195 (76%), Gaps = 4/195 (2%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M REL VPGAWEITP D RG+F EW D GF A G +LD+ Q NCSVS+AGVLRG
Sbjct 4 MDYRELKVPGAWEITPRQFGDHRGVFLEWFKDPGFSANVGRTLDLAQANCSVSAAGVLRG 63
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PP QAKYVTCV G++ DVVVD+R GSPTFG+WDSVLLDD DRR +++SEGL HG
Sbjct 64 IHFADVPPGQAKYVTCVRGAILDVVVDLRVGSPTFGQWDSVLLDDVDRRAVFISEGLGHG 123
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLV--DGAAP--SLSDRDAAAPS 176
FL+L+D+STV+YLCS Y P REH + DP + +DWP+V DG++ +LSD+D AAP+
Sbjct 124 FLSLEDDSTVIYLCSTGYAPDREHEVSPLDPGIGIDWPVVGRDGSSLQWTLSDKDLAAPT 183
Query 177 FEDVRASGLLPRWEQ 191
+ R +GLLP + +
Sbjct 184 LQQARDAGLLPVYRE 198
>gi|312137739|ref|YP_004005075.1| dtdp-4-dehydrorhamnose 3,5-epimerase rmlc [Rhodococcus equi 103S]
gi|311887078|emb|CBH46387.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Rhodococcus equi 103S]
Length=198
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 117/195 (60%), Positives = 147/195 (76%), Gaps = 4/195 (2%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M REL VPGAWEITP D RG+F EW D GF A G +LD+ Q NCSVS+AGVLRG
Sbjct 1 MDYRELKVPGAWEITPRQFGDHRGVFLEWFKDPGFSANVGRTLDLAQANCSVSAAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PP QAKYVTCV G++ DVVVD+R GSPTFG+WDSVLLDD DRR +++SEGL HG
Sbjct 61 IHFADVPPGQAKYVTCVRGAILDVVVDLRVGSPTFGQWDSVLLDDVDRRAVFISEGLGHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLV--DGAAP--SLSDRDAAAPS 176
FL+L+D+STV+YLCS Y P REH + DP + +DWP+V DG++ +LSD+D AAP+
Sbjct 121 FLSLEDDSTVIYLCSTGYAPDREHEVSPLDPGIGIDWPVVGRDGSSLQWTLSDKDLAAPT 180
Query 177 FEDVRASGLLPRWEQ 191
+ R +GLLP + +
Sbjct 181 LQQARDAGLLPVYRE 195
>gi|269957344|ref|YP_003327133.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylanimonas cellulosilytica
DSM 15894]
gi|269306025|gb|ACZ31575.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Xylanimonas cellulosilytica
DSM 15894]
Length=205
Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 120/205 (59%), Positives = 142/205 (70%), Gaps = 4/205 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M R L + GAWE+TP D RG+F EW F GH +D+RQ N SVS+AGVLRG
Sbjct 1 MDIRALKIEGAWELTPRQFGDDRGVFLEWFKGDAFAEAVGHGIDLRQANLSVSAAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PPSQAKYVTCV G+V DVVVDIR GSPT+G+WDSVLLDD DRR IY+SEGL H
Sbjct 61 VHFADVPPSQAKYVTCVKGAVLDVVVDIRVGSPTYGQWDSVLLDDVDRRAIYLSEGLGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLV--DGA--APSLSDRDAAAPS 176
F +L+D STV YLCSA Y P REH I DP + + WP DG+ AP LSD+DAAAP+
Sbjct 121 FCSLEDGSTVTYLCSAPYAPGREHGIHPLDPEIGIVWPTTGRDGSPLAPLLSDKDAAAPT 180
Query 177 FEDVRASGLLPRWEQTQRFIGEMRG 201
+ R GLLP W+ Q F +RG
Sbjct 181 LAEAREQGLLPTWDAVQEFRASLRG 205
>gi|296130190|ref|YP_003637440.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulomonas flavigena
DSM 20109]
gi|296022005|gb|ADG75241.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulomonas flavigena
DSM 20109]
Length=210
Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 115/204 (57%), Positives = 143/204 (71%), Gaps = 4/204 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M REL VPGAWEITP H D RG+F E+ F GH+ D++Q NCSVS+AGVLRG
Sbjct 1 MHYRELSVPGAWEITPKQHGDPRGVFLEYFKGGPFAEATGHAFDLQQANCSVSAAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PP QAKYVTC G+V DVVVDIR GSPTFGRWD+VLLDD DRR IY+ EGL H
Sbjct 61 IHFADVPPGQAKYVTCAKGAVLDVVVDIRVGSPTFGRWDTVLLDDTDRRAIYLGEGLGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLV--DGA--APSLSDRDAAAPS 176
F++L+D+STV+YLCS Y P REH I DP + + WP DG+ P LS++D AAP+
Sbjct 121 FMSLEDDSTVLYLCSTGYAPGREHGIHPLDPEIGITWPTTARDGSPLTPQLSEKDTAAPT 180
Query 177 FEDVRASGLLPRWEQTQRFIGEMR 200
+ RA+GLLP + ++ +R
Sbjct 181 LAEARAAGLLPDAAVVEEYVQGLR 204
>gi|169630860|ref|YP_001704509.1| dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Mycobacterium abscessus
ATCC 19977]
gi|169242827|emb|CAM63855.1| DTDP-4-dehydrorhamnose 3,5-epimerase RmlC [Mycobacterium abscessus]
Length=205
Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/205 (59%), Positives = 145/205 (71%), Gaps = 4/205 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MK REL VPG++EITP H DSRG+F E GH +++Q NCSVS+AG LRG
Sbjct 1 MKIRELSVPGSFEITPVQHHDSRGVFLELFKGPALAEAIGHPFELQQANCSVSAAGSLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PP QAKYVTC++GSV+DVVVDIR GSPTFG WD+VLLD +DRR +YV EG+ HG
Sbjct 61 IHFADVPPGQAKYVTCLTGSVYDVVVDIRVGSPTFGAWDAVLLDPRDRRAVYVPEGVGHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPL--VDGAAPSL--SDRDAAAPS 176
FLAL+D+STV+YLCSA Y P REH I DPT+ + WP DG SL S++D AAPS
Sbjct 121 FLALEDDSTVVYLCSAGYAPGREHGIDPLDPTVGIQWPTRRPDGTELSLLVSEKDGAAPS 180
Query 177 FEDVRASGLLPRWEQTQRFIGEMRG 201
D R SGLLP + Q F+ + G
Sbjct 181 LLDARDSGLLPDAAEVQAFLDGLSG 205
>gi|226303737|ref|YP_002763695.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus erythropolis
PR4]
gi|226182852|dbj|BAH30956.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus erythropolis
PR4]
Length=197
Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/192 (58%), Positives = 141/192 (74%), Gaps = 4/192 (2%)
Query 4 RELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHF 63
REL VPGAWE TP D RG+F EW + GF G +LD++Q NCSVS+AGVLRG+HF
Sbjct 5 RELKVPGAWEFTPKQFGDDRGVFLEWFREPGFSEITGRTLDLQQANCSVSAAGVLRGIHF 64
Query 64 AQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLA 123
A +PP QAKYVTCV G++ D+ VD+R GSPTFG+WDSVLLDD DRR I++SEGL H FL+
Sbjct 65 ADVPPGQAKYVTCVKGAILDIAVDLRVGSPTFGQWDSVLLDDVDRRAIFLSEGLGHAFLS 124
Query 124 LQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAP----SLSDRDAAAPSFED 179
L+DNSTV+YLCS Y P+REH + DP +A+DWP V + +LS +D AAPS +D
Sbjct 125 LEDNSTVVYLCSTGYAPEREHEVHPLDPDIAIDWPTVGRSGEPLNITLSAKDTAAPSLQD 184
Query 180 VRASGLLPRWEQ 191
++GLLP + +
Sbjct 185 AVSAGLLPTFGE 196
>gi|332671010|ref|YP_004454018.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulomonas fimi ATCC
484]
gi|332340048|gb|AEE46631.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Cellulomonas fimi ATCC
484]
Length=206
Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 118/204 (58%), Positives = 138/204 (68%), Gaps = 4/204 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+ REL VPGA EITP D RG+F EW F GH L + Q NCSVS+AGVLRG
Sbjct 1 MQVRELSVPGALEITPRQFADDRGVFLEWFAGAAFGEAVGHDLTLAQANCSVSAAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PP QAKYVTC G+V DVVVDIR GSPTFG+WDSVLLDD DRR IYV EGL H
Sbjct 61 IHFADVPPGQAKYVTCARGAVLDVVVDIRVGSPTFGQWDSVLLDDVDRRAIYVPEGLGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLV--DG--AAPSLSDRDAAAPS 176
F++L+D+STV+YLCSA Y P REH + D LA+ WP DG P LS +DA APS
Sbjct 121 FMSLEDDSTVLYLCSAPYAPGREHGVHPLDADLAIAWPTQGRDGRPLTPLLSPKDAEAPS 180
Query 177 FEDVRASGLLPRWEQTQRFIGEMR 200
D +A GLLP + F+ +R
Sbjct 181 LADAQAQGLLPVAADVEAFVAGLR 204
>gi|269794231|ref|YP_003313686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sanguibacter keddieii DSM
10542]
gi|269096416|gb|ACZ20852.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Sanguibacter keddieii DSM
10542]
Length=204
Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 115/204 (57%), Positives = 142/204 (70%), Gaps = 4/204 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+ R+L VPGAWEITP D RG+F EW F AGH+L + Q N SVS+AGVLRG
Sbjct 1 MEFRQLSVPGAWEITPKQFGDPRGVFLEWFKGAPFAEEAGHALALAQANLSVSAAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PP QAKYVTC G+V DVVVDIR GSPT+G+WDSVLLDD DRR IY+SEGL H
Sbjct 61 IHFADVPPGQAKYVTCARGAVLDVVVDIRVGSPTYGQWDSVLLDDVDRRAIYLSEGLGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLV--DGAAP--SLSDRDAAAPS 176
FL+L+D+STV+YLCSA Y P REH I DP + +DWP DG+ LS++D+ AP+
Sbjct 121 FLSLEDDSTVLYLCSAPYAPGREHGIHPLDPEIGIDWPTTARDGSPLQYELSEKDSVAPT 180
Query 177 FEDVRASGLLPRWEQTQRFIGEMR 200
+ SGLLP + F+ +R
Sbjct 181 LAEALQSGLLPSANEVAEFVAGLR 204
>gi|325673208|ref|ZP_08152901.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus equi ATCC 33707]
gi|325556043|gb|EGD25712.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus equi ATCC 33707]
Length=209
Score = 234 bits (597), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 109/203 (54%), Positives = 143/203 (71%), Gaps = 4/203 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+ REL + GAWE+TP D RG+F EW + F GH LD++Q NCSVS+AGVLRG
Sbjct 3 MEYRELAISGAWEVTPKQFGDDRGVFLEWFKEPTFSEAVGHPLDLQQANCSVSAAGVLRG 62
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PP QAKYVTC+ G+V DVVVDIR GSPTFG+WDSVLLDD DRR +Y+SEGL H
Sbjct 63 IHFADVPPGQAKYVTCLKGAVLDVVVDIRVGSPTFGKWDSVLLDDVDRRAVYLSEGLGHA 122
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPS----LSDRDAAAPS 176
FL+L+D+STV+YLCS+ Y P REH I DP + ++WP + + LS++D APS
Sbjct 123 FLSLEDSSTVVYLCSSGYAPGREHGINPLDPAIGIEWPKLSRSGQPLEFVLSEKDCEAPS 182
Query 177 FEDVRASGLLPRWEQTQRFIGEM 199
+ S LLP ++ + ++ E+
Sbjct 183 LAEAGTSRLLPSYDDIKEYLDEL 205
>gi|269219067|ref|ZP_06162921.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral taxon
848 str. F0332]
gi|269211214|gb|EEZ77554.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Actinomyces sp. oral taxon
848 str. F0332]
Length=203
Score = 234 bits (596), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 112/203 (56%), Positives = 140/203 (69%), Gaps = 4/203 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+ REL +PGAWEITP D RG+F E F GH LD+RQ N SVS AG +RG
Sbjct 1 MQIRELKIPGAWEITPKQFPDDRGVFLEAYKSSAFEKAVGHRLDLRQANVSVSKAGTVRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PPSQAKYV C G+V D +DIR GSPTFG+WDSVLLDD DRR IY+SEGL H
Sbjct 61 IHFADVPPSQAKYVVCPRGAVLDFAIDIRVGSPTFGQWDSVLLDDVDRRAIYLSEGLGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLV--DGAAPS--LSDRDAAAPS 176
F+AL+D+STVMY+CSAEY P REH + P +A+D+P DG+ LS++D AAP+
Sbjct 121 FIALEDDSTVMYMCSAEYAPGREHGVSPVCPEVALDFPKTGRDGSPLELLLSEKDTAAPN 180
Query 177 FEDVRASGLLPRWEQTQRFIGEM 199
+ R SGLLP W+ Q ++ +
Sbjct 181 LAEARESGLLPTWDAVQAYLATL 203
>gi|315502242|ref|YP_004081129.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora sp. L5]
gi|315408861|gb|ADU06978.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora sp. L5]
Length=202
Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/195 (56%), Positives = 136/195 (70%), Gaps = 3/195 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MK R L + GAWE+TP H D+RGLF EW G L + Q N SVS+ GV+RG
Sbjct 1 MKIRPLSIEGAWEVTPRRHGDARGLFLEWYRFDRLAEAVGRPLRLAQANLSVSARGVVRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PP QAKYVTCV G+V DVVVD+R GSPT+GRW++V LDD DRR +Y++EGL HG
Sbjct 61 IHFADVPPGQAKYVTCVRGAVLDVVVDVRAGSPTYGRWEAVRLDDTDRRAVYLAEGLGHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
F AL D++T+ YLCSA YNP EHT+ DP L +DWP A P LS+RDAAAP +
Sbjct 121 FCALTDDATLSYLCSATYNPAAEHTVHPLDPDLGIDWP---AATPLLSERDAAAPRLAEA 177
Query 181 RASGLLPRWEQTQRF 195
RA+GLLP ++ + F
Sbjct 178 RAAGLLPGYDACRSF 192
>gi|302865678|ref|YP_003834315.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora aurantiaca
ATCC 27029]
gi|302568537|gb|ADL44739.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Micromonospora aurantiaca
ATCC 27029]
Length=202
Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/195 (56%), Positives = 136/195 (70%), Gaps = 3/195 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MK R L + GAWE+TP H D+RGLF EW G L + Q N SVS+ GV+RG
Sbjct 1 MKIRPLSIEGAWEVTPRRHGDARGLFLEWYRFDRLAEAVGRPLRLAQANLSVSARGVVRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PP QAKYVTCV G+V DVVVD+R GSPT+GRW++V LDD DRR +Y++EGL HG
Sbjct 61 IHFADVPPGQAKYVTCVRGAVLDVVVDVRAGSPTYGRWEAVRLDDTDRRAVYLTEGLGHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
F AL D++T+ YLCSA YNP EHT+ DP L +DWP A P LS+RDAAAP +
Sbjct 121 FCALTDDATLSYLCSATYNPAAEHTVHPLDPDLGIDWP---AATPLLSERDAAAPRLAEA 177
Query 181 RASGLLPRWEQTQRF 195
RA+GLLP ++ + F
Sbjct 178 RAAGLLPGYDACRSF 192
>gi|297194408|ref|ZP_06911806.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces pristinaespiralis
ATCC 25486]
gi|197718783|gb|EDY62691.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces pristinaespiralis
ATCC 25486]
Length=210
Score = 228 bits (581), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/196 (56%), Positives = 136/196 (70%), Gaps = 2/196 (1%)
Query 4 RELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHF 63
R+L + GAW P I DSRG F EW + F AGH L + Q NCSVSS G LRG+HF
Sbjct 13 RQLSITGAWVHEPKIFPDSRGSFHEWFKEGDFAKAAGHGLRLAQANCSVSSRGTLRGVHF 72
Query 64 AQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLA 123
A +PPSQAKYV CV G+V DVVVDIR GSPTFG+W++V LDD D R++Y+SEGL H F+A
Sbjct 73 ADVPPSQAKYVKCVRGTVLDVVVDIRVGSPTFGKWEAVRLDDVDHRSVYLSEGLGHAFMA 132
Query 124 LQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRAS 183
L D++TV+YLCS Y P+REH I DP L ++WP P LSD+DAAAPS +
Sbjct 133 LTDDATVVYLCSEGYAPEREHGIDPLDPGLGIEWP--QDITPVLSDKDAAAPSLAEAERQ 190
Query 184 GLLPRWEQTQRFIGEM 199
GLLPR+E+ + + E+
Sbjct 191 GLLPRYEECRAYYAEL 206
>gi|238560602|gb|ACR46366.1| TDP-4-dehydrorhamnose 3,5-epimerase [Streptomyces peucetius ATCC
27952]
Length=199
Score = 227 bits (579), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 106/197 (54%), Positives = 137/197 (70%), Gaps = 2/197 (1%)
Query 4 RELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHF 63
R+L + GAW P I DSRG F EW F AGH L++ Q NCSVSS G LRG+HF
Sbjct 2 RQLSIAGAWVHEPKIFPDSRGSFHEWFRAPEFTEAAGHGLNLAQANCSVSSRGTLRGIHF 61
Query 64 AQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLA 123
A +PPSQAKYV CV G+V DV+VDIR GSPTFG+W++V LDD D ++Y+SEGL H F+A
Sbjct 62 ADVPPSQAKYVKCVRGAVLDVIVDIRVGSPTFGQWEAVRLDDADHHSVYLSEGLGHAFMA 121
Query 124 LQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRAS 183
L D++TV+YLCS Y+P REH I DP L ++WP +G P LS++D AAP+ + +A
Sbjct 122 LTDDATVVYLCSEGYSPGREHGITPLDPELGIEWP--EGITPLLSEKDEAAPTLAEAKAQ 179
Query 184 GLLPRWEQTQRFIGEMR 200
GLLP +E Q + ++R
Sbjct 180 GLLPSYEDCQAYYAQLR 196
>gi|315654769|ref|ZP_07907674.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii ATCC
51333]
gi|315490730|gb|EFU80350.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii ATCC
51333]
Length=205
Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/203 (53%), Positives = 136/203 (67%), Gaps = 4/203 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+ REL + GAWEITP D RG F E F GH L++ Q NCS+S AGV+RG
Sbjct 1 MEYRELKIAGAWEITPKQFPDERGAFMEMYKMGEFAEVVGHPLNLVQANCSISKAGVVRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA++PPSQAKYV C G+V D VDIR GSPTFG+WDSVLL+ + RR IY+SEGL H
Sbjct 61 IHFAEVPPSQAKYVMCPRGAVLDFAVDIRVGSPTFGQWDSVLLEGEHRRAIYLSEGLGHC 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPS----LSDRDAAAPS 176
F+AL+DNSTV+YLCS YNP EH + DP +A+ WP D A LS++D AAPS
Sbjct 121 FVALEDNSTVVYLCSEGYNPGHEHGVSPVDPEVALKWPDHDLAGRPLEVILSEKDTAAPS 180
Query 177 FEDVRASGLLPRWEQTQRFIGEM 199
+ R GLLP +++T ++ +
Sbjct 181 LTEAREQGLLPDYQETLDYVASL 203
>gi|315657310|ref|ZP_07910192.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315491782|gb|EFU81391.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length=205
Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/203 (53%), Positives = 137/203 (68%), Gaps = 4/203 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+ REL + GAWEITP D RG F E F GH L++ Q NCS+S AGV+RG
Sbjct 1 MEYRELKIAGAWEITPKQFPDERGAFMEMYKMGEFAEVVGHPLNLVQANCSISKAGVVRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA++PPSQAKYV C G+V D VDIR GSPTFG+WDSVLL+ + RR IY+SEGL H
Sbjct 61 IHFAEVPPSQAKYVMCPRGAVLDFAVDIRVGSPTFGQWDSVLLEGEHRRAIYLSEGLGHC 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPS----LSDRDAAAPS 176
F+AL+D+STV+YLCS YNP REH + DP +A+ WP D A LS++D AAPS
Sbjct 121 FVALEDDSTVVYLCSEGYNPGREHGVSPVDPEVALKWPDHDLAGRPLEVILSEKDTAAPS 180
Query 177 FEDVRASGLLPRWEQTQRFIGEM 199
+ R GLLP +++T ++ +
Sbjct 181 LTEAREQGLLPDYQETLDYVASL 203
>gi|343924256|ref|ZP_08763816.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Gordonia alkanivorans
NBRC 16433]
gi|343765825|dbj|GAA10742.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Gordonia alkanivorans
NBRC 16433]
Length=208
Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/205 (55%), Positives = 135/205 (66%), Gaps = 4/205 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MK R L + GAWE+TP H D+RGLF E GH D+ QVN SVS+AGVLRG
Sbjct 1 MKVRPLTIDGAWELTPVQHGDARGLFAEAFKGDLLAEVIGHRFDLAQVNLSVSAAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PP QAKYVTC +G++ DV+VDIR GSPTFG +D+VLLDD DRR +Y+SEGL H
Sbjct 61 VHFADVPPGQAKYVTCATGAILDVIVDIRVGSPTFGTYDTVLLDDVDRRAVYLSEGLGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPL--VDGA--APSLSDRDAAAPS 176
F AL DNSTV YLCS YNP EH I DP L ++WP DG+ LS++D AAP
Sbjct 121 FCALADNSTVTYLCSTGYNPSGEHGINPLDPELGIEWPTHARDGSPLEYELSEKDTAAPG 180
Query 177 FEDVRASGLLPRWEQTQRFIGEMRG 201
+ R SGLLP + F+ + G
Sbjct 181 LTEARESGLLPDHDDVTAFLRGLAG 205
>gi|111225335|ref|YP_716129.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Frankia alni ACN14a]
gi|111152867|emb|CAJ64614.1| dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose
3,5-epimerase) (dTDP-L-rhamnose synthetase) [Frankia alni
ACN14a]
Length=208
Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/201 (55%), Positives = 132/201 (66%), Gaps = 2/201 (0%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+ EL VP AW TP H DSRG F EW GH L + Q N SVS AG LRG
Sbjct 1 MEISELSVPDAWVFTPRQHSDSRGTFLEWFRSDALAEVVGHPLTLSQANHSVSRAGTLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+H+AQ+PPSQAKYVTCV G V D VVDIR GSPTFG + +VLLDD DRR +YVSEGL H
Sbjct 61 VHYAQVPPSQAKYVTCVRGRVLDCVVDIRTGSPTFGTFAAVLLDDVDRRGLYVSEGLGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
F+AL D++ + YLCS Y P REH + DP LA+ WP D P LS++DAAAPS ++
Sbjct 121 FMALTDDAAISYLCSTPYTPGREHGVDPLDPDLALPWP--DDLTPLLSEKDAAAPSLKEA 178
Query 181 RASGLLPRWEQTQRFIGEMRG 201
++GLLP + + F E+R
Sbjct 179 ESAGLLPTYRDCRAFYDELRA 199
>gi|111021079|ref|YP_704051.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus jostii RHA1]
gi|110820609|gb|ABG95893.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodococcus jostii RHA1]
Length=195
Score = 221 bits (563), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/193 (55%), Positives = 135/193 (70%), Gaps = 4/193 (2%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+ R+L VPGAWEITP D RG+F EW F A GHSL++ Q NCSVS+AGVLRG
Sbjct 1 MEYRKLKVPGAWEITPRQFGDDRGVFLEWFKGSEFEAAVGHSLELAQANCSVSAAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HF PP QAKYVTCV G+ DV+VD+R GSP FG+WDSVL+DD DRR +Y+ G+ H
Sbjct 61 IHFTDNPPGQAKYVTCVKGAFLDVIVDLRVGSPMFGQWDSVLIDDADRRAVYLPAGVGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLV--DGAAPS--LSDRDAAAPS 176
L+L+D STVMYLCS EY P +H + DP L +DWP V DG+ + LS++D+AAPS
Sbjct 121 ILSLEDASTVMYLCSIEYTPALDHDLHPLDPELGIDWPTVGRDGSPLTFQLSEKDSAAPS 180
Query 177 FEDVRASGLLPRW 189
+ +G+LP +
Sbjct 181 LQQALDAGVLPTF 193
>gi|158056586|emb|CAP11386.1| 3,5-epimerase [Streptomyces olivaceus]
Length=201
Score = 220 bits (561), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 102/195 (53%), Positives = 134/195 (69%), Gaps = 2/195 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
MK L + GAWE P D+RGLF EW GH L+++Q N SVSSAGV+RG
Sbjct 1 MKVNPLGIEGAWEFVPQQFGDARGLFLEWYKAERMAEAVGHPLNLKQGNLSVSSAGVVRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA +PP QAKYVTCV G+V D++VD+R GSPTFG+W++V LDD+DR+ +Y+SEGL HG
Sbjct 61 IHFADVPPGQAKYVTCVRGAVLDIIVDVRVGSPTFGKWEAVRLDDKDRKAVYLSEGLGHG 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDV 180
F AL D++TV YLCS Y P+RE T+ DP + ++WP VDG P LS +DA P+
Sbjct 121 FCALTDDATVTYLCSEGYAPERERTVYPLDPEIGIEWP-VDG-EPELSAKDAQGPTLAQA 178
Query 181 RASGLLPRWEQTQRF 195
R +G+LP +E+ F
Sbjct 179 REAGILPVYEECVAF 193
>gi|227875184|ref|ZP_03993326.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris ATCC
35243]
gi|227844089|gb|EEJ54256.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris ATCC
35243]
Length=204
Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/203 (54%), Positives = 134/203 (67%), Gaps = 4/203 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+ REL VPGAWEITP D RG F E F GH L + Q NCS+S AGV+RG
Sbjct 1 MEYRELKVPGAWEITPKQFPDERGAFMEMYKLGEFAKVVGHPLSLVQANCSISKAGVVRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA++PPSQAKYV C G+V D VDIR GSPTFG WDSVLL+ + RR IY+SEGL H
Sbjct 61 IHFAEVPPSQAKYVMCPRGAVLDFAVDIRVGSPTFGAWDSVLLEGEHRRAIYLSEGLGHC 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPS----LSDRDAAAPS 176
F+AL+D+STV+YLCS YNP REH + DP + + +P D A LS++D AAPS
Sbjct 121 FVALEDDSTVVYLCSEGYNPGREHGVSPVDPEVGLVFPDKDLAGRPLKVLLSEKDTAAPS 180
Query 177 FEDVRASGLLPRWEQTQRFIGEM 199
+ R GLLP ++ T +I +
Sbjct 181 LAEAREQGLLPEYQATLDYIASL 203
>gi|298346186|ref|YP_003718873.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii ATCC
43063]
gi|298236247|gb|ADI67379.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus curtisii ATCC
43063]
Length=205
Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/203 (53%), Positives = 135/203 (67%), Gaps = 4/203 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+ REL + GAWEITP D RG F E F GH L++ Q NCS+S AGV+RG
Sbjct 1 MEYRELKIAGAWEITPKQFPDERGAFMEMYKMGEFAEVVGHPLNLVQANCSISKAGVVRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA++PPSQAKYV C G+V D VDIR GSPTFG+WDSVLL+ + RR IY+SEGL H
Sbjct 61 IHFAEVPPSQAKYVMCPRGAVLDFAVDIRVGSPTFGQWDSVLLEGEHRRAIYLSEGLGHC 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPS----LSDRDAAAPS 176
F+AL+DNSTV+YLCS YNP REH + DP +A+ WP D A LS++D AAPS
Sbjct 121 FVALEDNSTVVYLCSEGYNPGREHGVSPVDPEVALKWPDHDLAGRPLEVILSEKDTAAPS 180
Query 177 FEDVRASGLLPRWEQTQRFIGEM 199
+ R LLP ++ T ++ +
Sbjct 181 LVEAREQDLLPDYQATLDYVASL 203
>gi|226363369|ref|YP_002781151.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus opacus
B4]
gi|226241858|dbj|BAH52206.1| dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase [Rhodococcus opacus
B4]
Length=193
Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/191 (56%), Positives = 132/191 (70%), Gaps = 4/191 (2%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+ REL VPGAWEITP D RG+F EW F A GH LD+ Q NCSVS+AGVLRG
Sbjct 1 MEYRELKVPGAWEITPRQFGDDRGVFLEWFKGSEFEAAVGHPLDLAQANCSVSAAGVLRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+H+ PP QAKYVTCV G+ DV+VD+R GSP FG+WDSVL+DD DRR +Y+ G+ H
Sbjct 61 IHYTDNPPGQAKYVTCVKGAFLDVIVDLRVGSPMFGQWDSVLIDDVDRRAVYLPAGVGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLV--DGAAPS--LSDRDAAAPS 176
L+L+D STVMYLCS EY P +H + DP L +DWP V DG+ + LS++D+AAPS
Sbjct 121 ILSLEDASTVMYLCSIEYTPALDHDLHPLDPDLGIDWPTVGRDGSPLTFQLSEKDSAAPS 180
Query 177 FEDVRASGLLP 187
+ +G LP
Sbjct 181 LQQAIDAGALP 191
>gi|271962204|ref|YP_003336400.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptosporangium roseum
DSM 43021]
gi|270505379|gb|ACZ83657.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Streptosporangium roseum
DSM 43021]
Length=216
Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/182 (59%), Positives = 127/182 (70%), Gaps = 2/182 (1%)
Query 6 LDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQ 65
L + G W TP IH D RG F E GH LD+ QVNCSVS GVLRG+HFA
Sbjct 4 LSIDGTWCHTPRIHADPRGSFLESYRAADLEESVGHRLDLAQVNCSVSRRGVLRGIHFAD 63
Query 66 LPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQ 125
+PP QAKYVTCVSG+V DVVVDIR GSPTFGRW++VLLDD+ RR +YV+EGL HGFL L
Sbjct 64 VPPGQAKYVTCVSGAVLDVVVDIRVGSPTFGRWETVLLDDESRRGLYVAEGLGHGFLTLS 123
Query 126 DNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRASGL 185
+ +TV+YLCS + P REH I DP L +DWP G P LSD+DAAAP+ ++ +GL
Sbjct 124 EQATVVYLCSRPFTPGREHGIHPLDPALGIDWPA--GVEPLLSDKDAAAPTLKEALDAGL 181
Query 186 LP 187
LP
Sbjct 182 LP 183
>gi|269978074|ref|ZP_06185024.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris 28-1]
gi|269933583|gb|EEZ90167.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Mobiluncus mulieris 28-1]
Length=204
Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/203 (53%), Positives = 133/203 (66%), Gaps = 4/203 (1%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M+ REL VPGAWEITP D RG F E F GH L + Q NCS+S AGV+RG
Sbjct 1 MEYRELKVPGAWEITPKQFPDERGAFMEMYKLGEFAKVVGHPLSLVQANCSISKAGVVRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HFA++PPSQAKYV C G+V D VDIR GSPTFG WDSVLL+ + RR IY+SEGL H
Sbjct 61 IHFAEVPPSQAKYVMCPRGAVLDFAVDIRVGSPTFGAWDSVLLEGEHRRAIYLSEGLGHC 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPS----LSDRDAAAPS 176
F+AL+D+STV+YLCS YNP REH + DP + + +P D LS++D AAPS
Sbjct 121 FVALEDDSTVVYLCSEGYNPGREHGVSPVDPEVGLVFPDKDLQGRPLKVLLSEKDTAAPS 180
Query 177 FEDVRASGLLPRWEQTQRFIGEM 199
+ R GLLP ++ T +I +
Sbjct 181 LAEAREQGLLPEYQATLDYIASL 203
>gi|326383444|ref|ZP_08205131.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gordonia neofelifaecis
NRRL B-59395]
gi|326197850|gb|EGD55037.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Gordonia neofelifaecis
NRRL B-59395]
Length=203
Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/200 (56%), Positives = 132/200 (66%), Gaps = 4/200 (2%)
Query 1 MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRG 60
M R L + GAW TP H D RGLF E GH LD+ QVN SVS+AGV+RG
Sbjct 1 MDVRPLTIDGAWAFTPVQHGDGRGLFLEAFKADVVAETIGHRLDLAQVNTSVSAAGVIRG 60
Query 61 LHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHG 120
+HF+ +PP QAKYVTC +G+V DVVVDIR GSPTFGRWD+VLLDD DRR +Y+SEGL H
Sbjct 61 VHFSDVPPGQAKYVTCSAGAVLDVVVDIRVGSPTFGRWDAVLLDDLDRRAVYLSEGLGHA 120
Query 121 FLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLV--DGAAPS--LSDRDAAAPS 176
F +LQD STV YLCS Y P EH I DP + + WP V DG+ LS++DAAAPS
Sbjct 121 FCSLQDGSTVTYLCSTGYRPGAEHGIDPMDPEIGIAWPKVARDGSPLEFVLSEKDAAAPS 180
Query 177 FEDVRASGLLPRWEQTQRFI 196
R SGLLP + + F+
Sbjct 181 LVQARESGLLPELDVVREFL 200
Lambda K H
0.321 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 220408776486
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40