BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3477

Length=98
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15843089|ref|NP_338126.1|  PE family protein [Mycobacterium tu...   186    1e-45
gi|31794651|ref|NP_857144.1|  PE family protein [Mycobacterium bo...   184    4e-45
gi|240169038|ref|ZP_04747697.1|  hypothetical protein MkanA1_0697...   107    5e-22
gi|342861310|ref|ZP_08717958.1|  hypothetical protein MCOL_20601 ...   104    5e-21
gi|183984754|ref|YP_001853045.1|  PE-PGRS family protein [Mycobac...   101    3e-20
gi|333989643|ref|YP_004522257.1|  PE-PGRS family protein [Mycobac...   100    5e-20
gi|342861305|ref|ZP_08717953.1|  hypothetical protein MCOL_20576 ...  99.4    2e-19
gi|296164186|ref|ZP_06846786.1|  PE family protein [Mycobacterium...  99.0    2e-19
gi|254775399|ref|ZP_05216915.1|  hypothetical protein MaviaA2_121...  99.0    2e-19
gi|254820293|ref|ZP_05225294.1|  hypothetical protein MintA_10211...  97.4    7e-19
gi|296170606|ref|ZP_06852185.1|  PE family protein [Mycobacterium...  97.1    7e-19
gi|183982677|ref|YP_001850968.1|  PE family protein, PE19_1 [Myco...  97.1    8e-19
gi|118618471|ref|YP_906803.1|  PE family protein [Mycobacterium u...  96.7    9e-19
gi|41407605|ref|NP_960441.1|  hypothetical protein MAP1507 [Mycob...  95.1    3e-18
gi|296164779|ref|ZP_06847341.1|  PE family protein [Mycobacterium...  94.7    4e-18
gi|240173303|ref|ZP_04751961.1|  PE family protein [Mycobacterium...  94.7    4e-18
gi|183985086|ref|YP_001853377.1|  PE family protein, PE32 [Mycoba...  94.4    5e-18
gi|118616216|ref|YP_904548.1|  PE-PGRS family protein family prot...  93.6    8e-18
gi|15843234|ref|NP_338271.1|  PE family protein [Mycobacterium tu...  93.6    1e-17
gi|167968541|ref|ZP_02550818.1|  PE family protein [Mycobacterium...  93.2    1e-17
gi|118619370|ref|YP_907702.1|  PE family protein [Mycobacterium u...  92.8    1e-17
gi|342861297|ref|ZP_08717945.1|  hypothetical protein MCOL_20536 ...  91.3    5e-17
gi|118618467|ref|YP_906799.1|  PE family protein [Mycobacterium u...  90.5    8e-17
gi|333991171|ref|YP_004523785.1|  PE-PGRS family protein [Mycobac...  90.1    9e-17
gi|296165761|ref|ZP_06848275.1|  PE family protein [Mycobacterium...  90.1    1e-16
gi|118616707|ref|YP_905039.1|  PPE family protein [Mycobacterium ...  88.6    3e-16
gi|296166686|ref|ZP_06849111.1|  PE family protein [Mycobacterium...  88.6    3e-16
gi|118465345|ref|YP_882101.1|  PE family protein [Mycobacterium a...  88.2    3e-16
gi|183982680|ref|YP_001850971.1|  PE family protein, PE19 [Mycoba...  88.2    3e-16
gi|254775390|ref|ZP_05216906.1|  hypothetical protein MaviaA2_120...  88.2    4e-16
gi|333992874|ref|YP_004525488.1|  PE-PGRS family protein [Mycobac...  87.8    5e-16
gi|240172414|ref|ZP_04751073.1|  PE family protein, PE19_1 [Mycob...  87.8    5e-16
gi|15841256|ref|NP_336293.1|  PE family protein [Mycobacterium tu...  87.4    6e-16
gi|333989636|ref|YP_004522250.1|  PE family protein PE8 [Mycobact...  87.4    7e-16
gi|183984213|ref|YP_001852504.1|  PPE family protein, PE31 [Mycob...  87.4    7e-16
gi|254364620|ref|ZP_04980666.1|  PE family protein [Mycobacterium...  86.7    1e-15
gi|183985090|ref|YP_001853381.1|  PE family protein [Mycobacteriu...  86.7    1e-15
gi|254822878|ref|ZP_05227879.1|  PE family protein [Mycobacterium...  86.3    1e-15
gi|296165770|ref|ZP_06848283.1|  PE family protein [Mycobacterium...  86.3    1e-15
gi|240173524|ref|ZP_04752182.1|  PE family protein, PE19_1 [Mycob...  85.5    3e-15
gi|212596283|gb|ACJ35566.1|  PE5 [Mycobacterium intracellulare AT...  85.5    3e-15
gi|41407612|ref|NP_960448.1|  hypothetical protein MAP1514 [Mycob...  84.3    5e-15
gi|333989806|ref|YP_004522420.1|  PE family protein PE19 [Mycobac...  84.0    8e-15
gi|333990542|ref|YP_004523156.1|  PE-PGRS family protein [Mycobac...  82.8    2e-14
gi|15841261|ref|NP_336298.1|  PE family protein [Mycobacterium tu...  82.0    3e-14
gi|31792979|ref|NP_855472.1|  PE family protein [Mycobacterium bo...  81.6    3e-14
gi|183982664|ref|YP_001850955.1|  PE-PGRS family protein, PE_PGRS...  81.3    5e-14
gi|240172899|ref|ZP_04751558.1|  PE family protein [Mycobacterium...  80.9    5e-14
gi|240172418|ref|ZP_04751077.1|  PE family protein [Mycobacterium...  80.9    5e-14
gi|240170799|ref|ZP_04749458.1|  PE-PGRS family protein [Mycobact...  80.5    7e-14


>gi|15843089|ref|NP_338126.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|57117110|ref|YP_177975.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121639395|ref|YP_979619.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 75 more sequence titles
 Length=98

 Score =  186 bits (471),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 97/98 (99%), Positives = 98/98 (100%), Gaps = 0/98 (0%)

Query  1   VSFTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAAT  60
           +SFTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAAT
Sbjct  1   MSFTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAAT  60

Query  61  YQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98
           YQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG
Sbjct  61  YQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98


>gi|31794651|ref|NP_857144.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|31620248|emb|CAD95691.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=98

 Score =  184 bits (467),  Expect = 4e-45, Method: Compositional matrix adjust.
 Identities = 96/98 (98%), Positives = 97/98 (99%), Gaps = 0/98 (0%)

Query  1   VSFTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAAT  60
           +SFTAQPEMLAAAAGELRSLGATLK SNAAAAVPTTGVVPPAADEVSLLLATQFRTHAAT
Sbjct  1   MSFTAQPEMLAAAAGELRSLGATLKVSNAAAAVPTTGVVPPAADEVSLLLATQFRTHAAT  60

Query  61  YQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98
           YQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG
Sbjct  61  YQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98


>gi|240169038|ref|ZP_04747697.1| hypothetical protein MkanA1_06979 [Mycobacterium kansasii ATCC 
12478]
Length=99

 Score =  107 bits (267),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 57/84 (68%), Positives = 65/84 (78%), Gaps = 0/84 (0%)

Query  3   FTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQ  62
            TAQP++LAAAA  L S+GA L A N+AAA PTTGV+PPAADEVS L+A QF  HAATYQ
Sbjct  4   LTAQPDVLAAAAANLGSVGAALSAGNSAAAAPTTGVLPPAADEVSALVAVQFAAHAATYQ  63

Query  63  TASAKAAVIHEQFVTTLATSASSY  86
             SA+AA IH+Q V TLA SA SY
Sbjct  64  AVSARAAGIHDQLVATLAASAGSY  87


>gi|342861310|ref|ZP_08717958.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
 gi|342131210|gb|EGT84491.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score =  104 bits (259),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 66/99 (67%), Positives = 74/99 (75%), Gaps = 1/99 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE LAAAAG L+++G+TL A NAAAA PTTGVVP AADEVS L A QF  H  
Sbjct  1   MSFVTTQPEALAAAAGNLQTIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHGQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98
            YQ  SA+AA IHE FV TL+TS+ SYA TEAANA  TG
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSYAVTEAANAAATG  99


>gi|183984754|ref|YP_001853045.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183178080|gb|ACC43190.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=99

 Score =  101 bits (252),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 57/92 (62%), Positives = 63/92 (69%), Gaps = 0/92 (0%)

Query  4   TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQT  63
           T+ PE L AAA  L S+GA + A NAAA  P TGVVP AADEVS L A  F  H A YQT
Sbjct  5   TSAPEALTAAALNLHSVGAGMSAGNAAAMAPITGVVPAAADEVSALTAAHFAAHGAMYQT  64

Query  64  ASAKAAVIHEQFVTTLATSASSYADTEAANAV  95
            SA+A  IHE FVTTL  S  SYA+TEAANA+
Sbjct  65  LSAQAQAIHEMFVTTLQASGGSYAETEAANAI  96


>gi|333989643|ref|YP_004522257.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333485611|gb|AEF35003.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score =  100 bits (250),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 56/87 (65%), Positives = 65/87 (75%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE LAAAAG L+++G+ L A NAAA+ PTTGVVP AADEVS L A QF THA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSALNAQNAAASAPTTGVVPAAADEVSALTAAQFATHAT  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQ+ +A+AA IHE FV TL  SA SY
Sbjct  61  LYQSVAAQAAAIHEMFVATLNGSAESY  87


>gi|342861305|ref|ZP_08717953.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
 gi|342131205|gb|EGT84486.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 58/87 (67%), Positives = 66/87 (76%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE LAAAAG L+++G+TL A NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQ  SA+AA IHE FV TL+TS+ SY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSY  87


>gi|296164186|ref|ZP_06846786.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900461|gb|EFG79867.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 59/97 (61%), Positives = 65/97 (68%), Gaps = 0/97 (0%)

Query  2   SFTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATY  61
           S T  P+ML AAAG L+ +G+ + A NA AA PTTGVVP AADEVS L A QF  HA  Y
Sbjct  3   SVTVDPQMLTAAAGTLQGIGSAMSAENAPAAAPTTGVVPAAADEVSALTALQFAAHAQMY  62

Query  62  QTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98
           Q  SA+AA IHE F  TL  SA SYA TEAANA   G
Sbjct  63  QAVSAQAAAIHEMFANTLGVSADSYAVTEAANAAAAG  99


>gi|254775399|ref|ZP_05216915.1| hypothetical protein MaviaA2_12121 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|212595819|gb|ACJ35525.1| PE7 [Mycobacterium avium subsp. avium]
 gi|336457654|gb|EGO36658.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 58/87 (67%), Positives = 66/87 (76%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE LAAAAG L+++G+TL A NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQ  SA+AA IHE FV TL+TS+ SY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSTSSGSY  87


>gi|254820293|ref|ZP_05225294.1| hypothetical protein MintA_10211 [Mycobacterium intracellulare 
ATCC 13950]
 gi|212596298|gb|ACJ35567.1| PE7 [Mycobacterium intracellulare ATCC 13950]
Length=99

 Score = 97.4 bits (241),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 57/87 (66%), Positives = 65/87 (75%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE LAAAAG L+++G+TL A NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQ  SA+A  IHE FV TL+TS+ SY
Sbjct  61  MYQAVSAQAQAIHEAFVNTLSTSSGSY  87


>gi|296170606|ref|ZP_06852185.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894738|gb|EFG74468.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 97.1 bits (240),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 57/87 (66%), Positives = 65/87 (75%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE LAAAAG L+++G+TL A NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQ  SA+AA IHE FV TL+ S+ SY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSMSSGSY  87


>gi|183982677|ref|YP_001850968.1| PE family protein, PE19_1 [Mycobacterium marinum M]
 gi|183176003|gb|ACC41113.1| PE family protein, PE19_1 [Mycobacterium marinum M]
Length=99

 Score = 97.1 bits (240),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 52/83 (63%), Positives = 59/83 (72%), Gaps = 0/83 (0%)

Query  4   TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQT  63
           T QPE LAAAA  L+ +G+TL + NAAAA PTTGVVP AADEVS L A QF  HA  YQ 
Sbjct  5   TTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQMYQA  64

Query  64  ASAKAAVIHEQFVTTLATSASSY  86
            SA+A+ IHE FV TL  S+ SY
Sbjct  65  VSAQASAIHEMFVNTLGISSGSY  87


>gi|118618471|ref|YP_906803.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570581|gb|ABL05332.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 96.7 bits (239),  Expect = 9e-19, Method: Compositional matrix adjust.
 Identities = 52/83 (63%), Positives = 59/83 (72%), Gaps = 0/83 (0%)

Query  4   TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQT  63
           T QPE LAAAA  L+ +G+TL + NAAAA PTTGVVP AADEVS L A QF  HA  YQ 
Sbjct  5   TTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFVAHAQMYQA  64

Query  64  ASAKAAVIHEQFVTTLATSASSY  86
            SA+A+ IHE FV TL  S+ SY
Sbjct  65  VSAQASAIHEMFVNTLGISSGSY  87


>gi|41407605|ref|NP_960441.1| hypothetical protein MAP1507 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395958|gb|AAS03824.1| PE_4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|225698451|gb|ACO07343.1| PE protein [Mycobacterium avium subsp. paratuberculosis]
Length=99

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 57/87 (66%), Positives = 65/87 (75%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE LAAAAG L+++G TL A NAAAA PTTGVVP AADEVS L A QF  +A 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGWTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAYAQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQ  SA+AA IHE FV TL+TS+ SY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSTSSVSY  87


>gi|296164779|ref|ZP_06847341.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899880|gb|EFG79324.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 65/99 (66%), Positives = 73/99 (74%), Gaps = 1/99 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE L+AAAG L+S+G+ L A NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSFVTTQPEALSAAAGSLQSIGSALNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98
            YQ  SA+AA IHE FV TL+ S+ SYA TEAANA  TG
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSMSSGSYAVTEAANAAATG  99


>gi|240173303|ref|ZP_04751961.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=146

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 47/84 (56%), Positives = 63/84 (75%), Gaps = 0/84 (0%)

Query  3   FTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQ  62
            T QP+ LAAAAG+L+++GAT++A N AAAVPTTGV+P AADEVS+L A+ F  + + YQ
Sbjct  4   LTTQPDELAAAAGKLQTIGATMEAENVAAAVPTTGVIPAAADEVSMLQASMFTAYGSLYQ  63

Query  63  TASAKAAVIHEQFVTTLATSASSY  86
             SA+AA ++E  V TL  SA +Y
Sbjct  64  QISAEAAAMYEMLVNTLGVSAGTY  87


>gi|183985086|ref|YP_001853377.1| PE family protein, PE32 [Mycobacterium marinum M]
 gi|183178412|gb|ACC43522.1| PE family protein, PE32 [Mycobacterium marinum M]
Length=99

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 51/93 (55%), Positives = 63/93 (68%), Gaps = 0/93 (0%)

Query  3   FTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQ  62
            TAQPE++A  A EL+++ +  +A +  A  PTTGVVPPAAD VS+L A QF  HA  YQ
Sbjct  4   VTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHARVYQ  63

Query  63  TASAKAAVIHEQFVTTLATSASSYADTEAANAV  95
             SA+AA + +Q VT L  SA SYA TEAAN V
Sbjct  64  AISAQAAAVQDQLVTVLGISAGSYAATEAANTV  96


>gi|118616216|ref|YP_904548.1| PE-PGRS family protein family protein [Mycobacterium ulcerans 
Agy99]
 gi|118568326|gb|ABL03077.1| PE-PGRS family protein family protein [Mycobacterium ulcerans 
Agy99]
Length=99

 Score = 93.6 bits (231),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 56/94 (60%), Positives = 61/94 (65%), Gaps = 0/94 (0%)

Query  2   SFTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATY  61
           S T+ PE L AAA  L S+GA   A NAAA  P TGVVP AADEVS L A  F  H A  
Sbjct  3   SVTSAPEALTAAALNLHSVGAGTSAGNAAAMAPITGVVPAAADEVSALTAAHFAAHGAMC  62

Query  62  QTASAKAAVIHEQFVTTLATSASSYADTEAANAV  95
           QT SA+A  I+E FVTTL     SYA+TEAANAV
Sbjct  63  QTLSAQAQAIYEMFVTTLQACGGSYAETEAANAV  96


>gi|15843234|ref|NP_338271.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|57117136|ref|YP_177999.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|148663485|ref|YP_001285008.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 67 more sequence titles
 Length=99

 Score = 93.6 bits (231),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 51/82 (63%), Positives = 58/82 (71%), Gaps = 0/82 (0%)

Query  5   AQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQTA  64
           A+PEMLAA AGEL+S+ A  +A NAA A PTTGVVP AAD VSLL A+QF  HA  YQ  
Sbjct  6   AEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQLYQAI  65

Query  65  SAKAAVIHEQFVTTLATSASSY  86
           SA+A  + EQ  TTL  SA SY
Sbjct  66  SAEAMAVQEQLATTLGISAGSY  87


>gi|167968541|ref|ZP_02550818.1| PE family protein [Mycobacterium tuberculosis H37Ra]
Length=96

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 51/82 (63%), Positives = 58/82 (71%), Gaps = 0/82 (0%)

Query  5   AQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQTA  64
           A+PEMLAA AGEL+S+ A  +A NAA A PTTGVVP AAD VSLL A+QF  HA  YQ  
Sbjct  3   AEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQLYQAI  62

Query  65  SAKAAVIHEQFVTTLATSASSY  86
           SA+A  + EQ  TTL  SA SY
Sbjct  63  SAEAMAVQEQLATTLGISAGSY  84


>gi|118619370|ref|YP_907702.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118571480|gb|ABL06231.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 92.8 bits (229),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 50/93 (54%), Positives = 63/93 (68%), Gaps = 0/93 (0%)

Query  3   FTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQ  62
            TAQPE++A  A EL+++ +  +A +  A  PTTGVVPPAAD VS+L A QF  HA  YQ
Sbjct  4   VTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHARVYQ  63

Query  63  TASAKAAVIHEQFVTTLATSASSYADTEAANAV  95
             SA+AA + ++ VT L  SA SYA TEAAN V
Sbjct  64  AISAQAAAVQDELVTVLGISAGSYAATEAANTV  96


>gi|342861297|ref|ZP_08717945.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
 gi|342131197|gb|EGT84478.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score = 91.3 bits (225),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 50/83 (61%), Positives = 55/83 (67%), Gaps = 0/83 (0%)

Query  4   TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQT  63
           TAQPE L  AA  L  +G+ L A N+A A P TGV P AADEVSLL A QF  H  T+Q 
Sbjct  5   TAQPESLDIAASRLHEIGSALTAQNSATAAPMTGVAPAAADEVSLLTAAQFARHGQTFQA  64

Query  64  ASAKAAVIHEQFVTTLATSASSY  86
            SA+AA IHE FVTTL  SA SY
Sbjct  65  LSAQAAAIHENFVTTLQVSAGSY  87


>gi|118618467|ref|YP_906799.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570577|gb|ABL05328.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 90.5 bits (223),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 58/87 (67%), Positives = 64/87 (74%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE LAAAA  L+ +G T+ A NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAGHAQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQ  SA+AAVIHE FV TLATS+ SY
Sbjct  61  MYQAVSAQAAVIHEMFVNTLATSSGSY  87


>gi|333991171|ref|YP_004523785.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333487139|gb|AEF36531.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 90.1 bits (222),  Expect = 9e-17, Method: Compositional matrix adjust.
 Identities = 50/84 (60%), Positives = 57/84 (68%), Gaps = 0/84 (0%)

Query  3   FTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQ  62
            TA PE L AAA  L S G  L + N AA VPTTGV+PPAADE+S +LA +F T A  YQ
Sbjct  4   LTADPEALRAAADCLSSTGGALASQNTAAQVPTTGVLPPAADEISAMLAARFTTQAQHYQ  63

Query  63  TASAKAAVIHEQFVTTLATSASSY  86
             SA+AA IHE FV TL  SAS+Y
Sbjct  64  QVSAQAAAIHEMFVATLNGSASTY  87


>gi|296165761|ref|ZP_06848275.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898886|gb|EFG78378.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 90.1 bits (222),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 56/96 (59%), Positives = 66/96 (69%), Gaps = 1/96 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF TAQPEMLAA A +LR +G+ L   NAAA+  TTGV+P  ADEVS L A QF  HA 
Sbjct  1   MSFVTAQPEMLAATANDLRGIGSALAVQNAAASRSTTGVIPAGADEVSALTAVQFAAHAQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSYADTEAANAV  95
            YQ  SA+AA  ++ FV TLA SA SYA TEA N +
Sbjct  61  MYQAVSAQAAAAYDLFVRTLAVSAGSYAATEAINTI  96


>gi|118616707|ref|YP_905039.1| PPE family protein [Mycobacterium ulcerans Agy99]
 gi|118568817|gb|ABL03568.1| PPE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 67/94 (72%), Positives = 71/94 (76%), Gaps = 0/94 (0%)

Query  2   SFTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATY  61
           S TA+PE LAAAAG L  +GA L A NAAAA P TGV+PPAADEVS LLATQF THAA Y
Sbjct  3   SVTARPEALAAAAGTLGPIGAALSAGNAAAAAPMTGVLPPAADEVSELLATQFATHAAMY  62

Query  62  QTASAKAAVIHEQFVTTLATSASSYADTEAANAV  95
           Q  SAKAA IHE F  T ATSA+SY  TE ANAV
Sbjct  63  QMVSAKAAAIHEHFAATSATSAASYLSTETANAV  96


>gi|296166686|ref|ZP_06849111.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897951|gb|EFG77532.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 56/94 (60%), Positives = 67/94 (72%), Gaps = 0/94 (0%)

Query  5   AQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQTA  64
           AQP+ML+AAAGEL+S+ + L+A NAAAA PTT V P A+D VS+L ATQF  HA  YQ  
Sbjct  6   AQPDMLSAAAGELQSINSALQAGNAAAAGPTTAVAPAASDAVSILTATQFSAHAQLYQAI  65

Query  65  SAKAAVIHEQFVTTLATSASSYADTEAANAVVTG  98
           SA+AA   EQ  T L   A SYA TEAAN+V+ G
Sbjct  66  SAQAARAQEQLATVLGICAGSYAATEAANSVLVG  99


>gi|118465345|ref|YP_882101.1| PE family protein [Mycobacterium avium 104]
 gi|118166632|gb|ABK67529.1| PE family protein [Mycobacterium avium 104]
 gi|212595805|gb|ACJ35524.1| PE6 [Mycobacterium avium subsp. avium]
Length=99

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 49/87 (57%), Positives = 57/87 (66%), Gaps = 0/87 (0%)

Query  4   TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQT  63
           TAQPE + AAA  L+ +G  L A   A + P TGVVP AAD VSLL A +F  H   +Q 
Sbjct  5   TAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQAFQA  64

Query  64  ASAKAAVIHEQFVTTLATSASSYADTE  90
            SA+AA +HE FVTTL TSA SYA TE
Sbjct  65  VSAEAAAVHEMFVTTLQTSAGSYAGTE  91


>gi|183982680|ref|YP_001850971.1| PE family protein, PE19 [Mycobacterium marinum M]
 gi|183176006|gb|ACC41116.1| PE family protein, PE19 [Mycobacterium marinum M]
Length=99

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 57/87 (66%), Positives = 63/87 (73%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE LAAAA  L+ +G T+ A NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQ  SA+AA IHE FV TLATS+ SY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|254775390|ref|ZP_05216906.1| hypothetical protein MaviaA2_12076 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=98

 Score = 88.2 bits (217),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 49/87 (57%), Positives = 57/87 (66%), Gaps = 0/87 (0%)

Query  4   TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQT  63
           TAQPE + AAA  L+ +G  L A   A + P TGVVP AAD VSLL A +F  H   +Q 
Sbjct  4   TAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQAFQA  63

Query  64  ASAKAAVIHEQFVTTLATSASSYADTE  90
            SA+AA +HE FVTTL TSA SYA TE
Sbjct  64  VSAEAAAVHEMFVTTLQTSAGSYAGTE  90


>gi|333992874|ref|YP_004525488.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333488842|gb|AEF38234.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=95

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 54/93 (59%), Positives = 63/93 (68%), Gaps = 0/93 (0%)

Query  3   FTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQ  62
            +A PE L A A EL S+G  + A N AAA PTTGVVP AADEVS L A QF  HA  YQ
Sbjct  1   MSALPEELTATAAELSSIGNAVAAQNTAAAGPTTGVVPAAADEVSALTAAQFARHAQMYQ  60

Query  63  TASAKAAVIHEQFVTTLATSASSYADTEAANAV  95
             S +AAV+HE+FV  L  +A SYA T+AANA+
Sbjct  61  AISKRAAVVHERFVIMLQRNAQSYAATDAANAI  93


>gi|240172414|ref|ZP_04751073.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=281

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 48/92 (53%), Positives = 61/92 (67%), Gaps = 0/92 (0%)

Query  7   PEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQTASA  66
           PEML AA G L ++G+ +  +N  AA+P  GV+P AADEVS++ A  F  +   YQ  SA
Sbjct  8   PEMLMAAVGRLEAIGSAVSTANVTAALPIAGVIPAAADEVSMVTAASFTAYGQLYQAISA  67

Query  67  KAAVIHEQFVTTLATSASSYADTEAANAVVTG  98
           +A +IHEQFV  L  SA+SYA TEAANA   G
Sbjct  68  EAHLIHEQFVKALGLSANSYAATEAANATHAG  99


>gi|15841256|ref|NP_336293.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792976|ref|NP_855469.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116910|ref|YP_177834.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 60 more sequence titles
 Length=99

 Score = 87.4 bits (215),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 56/87 (65%), Positives = 62/87 (72%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE LAAAAG L+ +G+ L A NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQ  SA+AA IHE FV TL  S+ SY
Sbjct  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87


>gi|333989636|ref|YP_004522250.1| PE family protein PE8 [Mycobacterium sp. JDM601]
 gi|333485604|gb|AEF34996.1| PE family protein PE8 [Mycobacterium sp. JDM601]
Length=273

 Score = 87.4 bits (215),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 49/91 (54%), Positives = 60/91 (66%), Gaps = 1/91 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T  PE +AA A  L+++G+ + A N AAA PTTG+ P  ADEVS+L ATQF  +  
Sbjct  1   MSFVTTHPEAMAATASNLQAIGSAMTAQNTAAAAPTTGIAPAGADEVSVLQATQFAAYGQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSYADTE  90
            YQ  SA+AA I E FV TL TSA SY  TE
Sbjct  61  LYQQISAQAAAIQEMFVNTLRTSADSYGSTE  91


>gi|183984213|ref|YP_001852504.1| PPE family protein, PE31 [Mycobacterium marinum M]
 gi|183177539|gb|ACC42649.1| PPE family protein, PE31 [Mycobacterium marinum M]
Length=99

 Score = 87.4 bits (215),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 69/94 (74%), Positives = 73/94 (78%), Gaps = 0/94 (0%)

Query  2   SFTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATY  61
           S TA+PE LAAAAG L S+GA L A NAAAA P TGV+PPAADEVS LLATQF THAA Y
Sbjct  3   SVTARPEALAAAAGTLGSIGAALNAGNAAAAAPMTGVLPPAADEVSELLATQFATHAAMY  62

Query  62  QTASAKAAVIHEQFVTTLATSASSYADTEAANAV  95
           Q  SAKAA IHE F  TLATSA+SY  TE ANAV
Sbjct  63  QMVSAKAAAIHEHFAATLATSAASYLSTETANAV  96


>gi|254364620|ref|ZP_04980666.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150134|gb|EBA42179.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=99

 Score = 86.7 bits (213),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 54/83 (66%), Positives = 59/83 (72%), Gaps = 0/83 (0%)

Query  4   TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQT  63
           T QPE LAAAAG L+ +G+ L A NAAAA PTTGVVP AADEVS L A QF  HA  YQ 
Sbjct  5   TTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQIYQA  64

Query  64  ASAKAAVIHEQFVTTLATSASSY  86
            SA+AA IHE FV TL  S+ SY
Sbjct  65  VSAQAAAIHEMFVNTLQMSSGSY  87


>gi|183985090|ref|YP_001853381.1| PE family protein [Mycobacterium marinum M]
 gi|183178416|gb|ACC43526.1| PE family protein [Mycobacterium marinum M]
Length=99

 Score = 86.7 bits (213),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 47/84 (56%), Positives = 56/84 (67%), Gaps = 0/84 (0%)

Query  3   FTAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQ  62
             AQ ++LAA A EL+S+   ++A N AAAVPTTGVVP AAD VSLL A+QF  HA  YQ
Sbjct  4   MLAQTDVLAATAAELQSINVAVQAGNVAAAVPTTGVVPAAADLVSLLTASQFAAHAQLYQ  63

Query  63  TASAKAAVIHEQFVTTLATSASSY  86
              A+A  + EQ  TTL  SA SY
Sbjct  64  QIGAQAVAVQEQLATTLGISAGSY  87


>gi|254822878|ref|ZP_05227879.1| PE family protein [Mycobacterium intracellulare ATCC 13950]
Length=176

 Score = 86.3 bits (212),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 53/98 (55%), Positives = 64/98 (66%), Gaps = 1/98 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T +PE L AAA  L +LG+++ A NAAAA PTT + P AADEVS L A QF  + A
Sbjct  1   MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVT  97
            YQ  SA+A  IH+  V  L TSA SY +TE AN V T
Sbjct  61  WYQQVSAQAKAIHQTMVNNLDTSAGSYGETETANRVTT  98


>gi|296165770|ref|ZP_06848283.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898876|gb|EFG78369.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=105

 Score = 86.3 bits (212),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 53/87 (61%), Positives = 62/87 (72%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           VSF T QPE L+AAAG+L  +G+ L A NAAA+ PTTGVVP A DEVS+L+A QF THA 
Sbjct  7   VSFVTTQPEALSAAAGKLAVIGSALAAQNAAASAPTTGVVPAATDEVSVLIAAQFATHAQ  66

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQT  A+A +IHE FV  L   A SY
Sbjct  67  MYQTVCAQATMIHESFVKMLHLGAGSY  93


>gi|240173524|ref|ZP_04752182.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 85.5 bits (210),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 57/87 (66%), Positives = 63/87 (73%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE LAAAA  L+ +G T+ A NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSFVTTQPEALAAAASSLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQ  SA+AA IHE FV TLATS+ SY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|212596283|gb|ACJ35566.1| PE5 [Mycobacterium intracellulare ATCC 13950]
Length=265

 Score = 85.5 bits (210),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 53/98 (55%), Positives = 64/98 (66%), Gaps = 1/98 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T +PE L AAA  L +LG+++ A NAAAA PTT + P AADEVS L A QF  + A
Sbjct  1   MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSYADTEAANAVVT  97
            YQ  SA+A  IH+  V  L TSA SY +TE AN V T
Sbjct  61  WYQQVSAQAKAIHQTMVNNLDTSAGSYGETETANRVTT  98


>gi|41407612|ref|NP_960448.1| hypothetical protein MAP1514 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395965|gb|AAS03831.1| PE_5 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336457563|gb|EGO36568.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score = 84.3 bits (207),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 47/83 (57%), Positives = 54/83 (66%), Gaps = 0/83 (0%)

Query  4   TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQT  63
           TAQPE + AAA  L+ +G  L A   A + P TGVVP AAD VSLL A +F  H   +Q 
Sbjct  5   TAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQAFQA  64

Query  64  ASAKAAVIHEQFVTTLATSASSY  86
            SA+AA IHE FVTTL TSA SY
Sbjct  65  VSAEAAAIHEMFVTTLQTSAGSY  87


>gi|333989806|ref|YP_004522420.1| PE family protein PE19 [Mycobacterium sp. JDM601]
 gi|333485774|gb|AEF35166.1| PE family protein PE19 [Mycobacterium sp. JDM601]
Length=99

 Score = 84.0 bits (206),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 48/81 (60%), Positives = 55/81 (68%), Gaps = 0/81 (0%)

Query  6   QPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQTAS  65
           QPE LA+AA ELR +G+ + A N AAA PTT + P AADEVS L A  F  HA  YQ  S
Sbjct  7   QPEALASAASELRGIGSVVAAQNMAAAGPTTVLPPAAADEVSALTAALFSAHAQAYQEVS  66

Query  66  AKAAVIHEQFVTTLATSASSY  86
           A+AA IHE FV TLA S+ SY
Sbjct  67  AQAAAIHEAFVRTLALSSESY  87


>gi|333990542|ref|YP_004523156.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333486510|gb|AEF35902.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 51/81 (63%), Positives = 60/81 (75%), Gaps = 0/81 (0%)

Query  6   QPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQTAS  65
           QPE L AAAG L ++G+ L A NAAAA PTTGVVP AADEVS L A QF  HA+ YQ+ S
Sbjct  7   QPEALTAAAGNLAAIGSALSAQNAAAATPTTGVVPAAADEVSALTAAQFAAHASMYQSIS  66

Query  66  AKAAVIHEQFVTTLATSASSY  86
           A+A  IH+ FV TL +SA+SY
Sbjct  67  AQAEAIHQAFVATLNSSANSY  87


>gi|15841261|ref|NP_336298.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|148823006|ref|YP_001287760.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253799168|ref|YP_003032169.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 17 more sequence titles
 Length=105

 Score = 82.0 bits (201),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 56/87 (65%), Positives = 62/87 (72%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE LAAAA  L+ +G T+ A NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  7   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  66

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQT SA+AA IHE FV TL  S+ SY
Sbjct  67  MYQTVSAQAAAIHEMFVNTLVASSGSY  93


>gi|31792979|ref|NP_855472.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116913|ref|YP_177837.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121637692|ref|YP_977915.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 59 more sequence titles
 Length=99

 Score = 81.6 bits (200),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 56/87 (65%), Positives = 62/87 (72%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T QPE LAAAA  L+ +G T+ A NAAAA PTTGVVP AADEVS L A QF  HA 
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQT SA+AA IHE FV TL  S+ SY
Sbjct  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87


>gi|183982664|ref|YP_001850955.1| PE-PGRS family protein, PE_PGRS50 [Mycobacterium marinum M]
 gi|183175990|gb|ACC41100.1| PE-PGRS family protein, PE_PGRS50 [Mycobacterium marinum M]
Length=2118

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 51/91 (57%), Positives = 64/91 (71%), Gaps = 0/91 (0%)

Query  4   TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQT  63
           T  PE++A AA +L  +G++L A+NAAAA PTT V+  AADEVS+ +AT F THAA YQ+
Sbjct  5   TVSPELVAGAASDLARIGSSLGAANAAAAGPTTTVLSAAADEVSVAIATLFGTHAAEYQS  64

Query  64  ASAKAAVIHEQFVTTLATSASSYADTEAANA  94
            SA+ A  HEQFV TL + A  Y  TEA NA
Sbjct  65  LSARMAAFHEQFVQTLTSGAGIYVSTEATNA  95


>gi|240172899|ref|ZP_04751558.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 80.9 bits (198),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 44/81 (55%), Positives = 54/81 (67%), Gaps = 0/81 (0%)

Query  6   QPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQTAS  65
           QPE LAAAAG L+ +G+ + A N AA+  TT V P AAD+VS L A +F  HA  YQ  S
Sbjct  7   QPETLAAAAGNLQEIGSAVSAQNVAASAHTTSVTPAAADQVSALTAARFSAHAQVYQVVS  66

Query  66  AKAAVIHEQFVTTLATSASSY  86
           A+AA IH+ FV  L  SA+SY
Sbjct  67  AQAAAIHQAFVAALTASANSY  87


>gi|240172418|ref|ZP_04751077.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 80.9 bits (198),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 51/82 (63%), Positives = 59/82 (72%), Gaps = 0/82 (0%)

Query  5   AQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQTA  64
           AQP+MLAA A EL+S+   ++A NAAAA PTTGV+P AAD VSLL ATQF THA  YQ  
Sbjct  6   AQPDMLAATATELQSINFAVRAGNAAAAGPTTGVLPAAADLVSLLTATQFATHAQMYQQI  65

Query  65  SAKAAVIHEQFVTTLATSASSY  86
           SA+A  + EQ  TTL  SA SY
Sbjct  66  SAQAVAVQEQLATTLGISAGSY  87


>gi|240170799|ref|ZP_04749458.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 80.5 bits (197),  Expect = 7e-14, Method: Compositional matrix adjust.
 Identities = 51/87 (59%), Positives = 60/87 (69%), Gaps = 1/87 (1%)

Query  1   VSF-TAQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59
           +SF T++PE L +AAG L+S+G+ + ASNAAA  P TGVVP AADEVS L A  F  H  
Sbjct  1   MSFVTSEPEALISAAGNLQSIGSAMNASNAAAIAPITGVVPAAADEVSALTAAHFAAHGT  60

Query  60  TYQTASAKAAVIHEQFVTTLATSASSY  86
            YQ  SA+AA IHE FVTTL  S  SY
Sbjct  61  LYQAVSAQAAAIHELFVTTLGASGGSY  87



Lambda     K      H
   0.309    0.116    0.300 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130183417542


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40