BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3482c Length=260 Score E Sequences producing significant alignments: (Bits) Value gi|15610618|ref|NP_217999.1| hypothetical protein Rv3482c [Mycob... 525 4e-147 gi|289763661|ref|ZP_06523039.1| conserved membrane protein [Myco... 457 1e-126 gi|121639401|ref|YP_979625.1| hypothetical protein BCG_3546c [My... 451 7e-125 gi|167967262|ref|ZP_02549539.1| hypothetical protein MtubH3_0418... 404 7e-111 gi|240170032|ref|ZP_04748691.1| hypothetical protein MkanA1_1201... 311 7e-83 gi|183984932|ref|YP_001853223.1| hypothetical protein MMAR_4964 ... 302 3e-80 gi|340772699|gb|EGR95200.1| hypothetical protein HMPREF9205_2066... 55.1 1e-05 gi|295131206|ref|YP_003581869.1| RDD family protein [Propionibac... 55.1 1e-05 gi|328906045|gb|EGG25820.1| RDD family protein [Propionibacteriu... 52.4 6e-05 gi|340774690|gb|EGR97168.1| hypothetical protein HMPREF1162_2190... 52.0 1e-04 gi|50843146|ref|YP_056373.1| hypothetical protein PPA1684 [Propi... 52.0 1e-04 gi|282855022|ref|ZP_06264354.1| RDD family protein [Propionibact... 51.6 1e-04 gi|289427825|ref|ZP_06429534.1| RDD family protein [Propionibact... 51.2 1e-04 gi|335052152|ref|ZP_08545047.1| RDD family protein [Propionibact... 51.2 1e-04 gi|342212265|ref|ZP_08704990.1| hypothetical protein HMPREF9949_... 51.2 1e-04 gi|289424882|ref|ZP_06426661.1| RDD family protein [Propionibact... 50.1 3e-04 gi|336180240|ref|YP_004585615.1| hypothetical protein FsymDg_444... 49.7 5e-04 gi|342239984|gb|AEL19989.1| gp33 [Mycobacterium phage Charlie] 49.3 5e-04 gi|291303667|ref|YP_003514945.1| Scramblase family protein [Stac... 48.5 0.001 gi|229819937|ref|YP_002881463.1| peptidase domain-containing pro... 46.6 0.003 gi|84496031|ref|ZP_00994885.1| Chromosome segregation ATPase [Ja... 45.4 0.008 gi|302550259|ref|ZP_07302601.1| conserved hypothetical protein [... 45.4 0.009 gi|288916577|ref|ZP_06410953.1| Scramblase family protein [Frank... 45.1 0.010 gi|29566052|ref|NP_817622.1| gp33 [Mycobacterium phage Bxz2] >gi... 45.1 0.010 gi|256396935|ref|YP_003118499.1| ATP/GTP binding protein [Catenu... 44.7 0.015 gi|296270641|ref|YP_003653273.1| hypothetical protein Tbis_2679 ... 44.3 0.017 gi|29833271|ref|NP_827905.1| hypothetical protein SAV_6729 [Stre... 44.3 0.018 gi|297625954|ref|YP_003687717.1| hypothetical protein PFREUD_074... 43.9 0.024 gi|170781672|ref|YP_001710004.1| hypothetical protein CMS_1266 [... 43.9 0.025 gi|337764872|emb|CCB73581.1| Scramblase family protein [Streptom... 43.9 0.025 gi|148273150|ref|YP_001222711.1| hypothetical protein CMM_1969 [... 43.5 0.031 gi|339755122|gb|AEJ95132.1| gp35 [Mycobacterium phage JHC117] 43.5 0.032 gi|118469087|ref|YP_885702.1| hypothetical protein MSMEG_1312 [M... 43.5 0.034 gi|111223619|ref|YP_714413.1| hypothetical protein FRAAL4219 [Fr... 43.1 0.037 gi|339755417|gb|AEJ95424.1| gp35 [Mycobacterium phage Microwolf]... 42.7 0.051 gi|170782890|ref|YP_001711224.1| hypothetical protein CMS_2568 [... 42.7 0.054 gi|336119543|ref|YP_004574320.1| hypothetical protein MLP_39030 ... 42.7 0.057 gi|302540891|ref|ZP_07293233.1| conserved hypothetical protein [... 42.7 0.059 gi|148271744|ref|YP_001221305.1| hypothetical protein CMM_0565 [... 42.4 0.061 gi|120401780|ref|YP_951609.1| hypothetical protein Mvan_0765 [My... 42.4 0.061 gi|226360799|ref|YP_002778577.1| hypothetical protein ROP_13850 ... 42.4 0.065 gi|29566148|ref|NP_817717.1| gp39 [Mycobacterium phage Che9c] >g... 42.4 0.073 gi|21220107|ref|NP_625886.1| hypothetical protein SCO1610 [Strep... 42.0 0.089 gi|289772678|ref|ZP_06532056.1| conserved hypothetical protein [... 42.0 0.090 gi|323359225|ref|YP_004225621.1| PPE-repeat proteins [Microbacte... 42.0 0.091 gi|72162667|ref|YP_290324.1| hypothetical protein Tfu_2268 [Ther... 42.0 0.091 gi|332671414|ref|YP_004454422.1| hypothetical protein Celf_2913 ... 42.0 0.093 gi|183981133|ref|YP_001849424.1| hypothetical protein MMAR_1113 ... 42.0 0.094 gi|329939058|ref|ZP_08288432.1| putative membrane protein [Strep... 42.0 0.098 gi|297203761|ref|ZP_06921158.1| scramblase [Streptomyces sviceus... 41.6 0.11 >gi|15610618|ref|NP_217999.1| hypothetical protein Rv3482c [Mycobacterium tuberculosis H37Rv] gi|15843094|ref|NP_338131.1| hypothetical protein MT3586 [Mycobacterium tuberculosis CDC1551] gi|31794658|ref|NP_857151.1| hypothetical protein Mb3512c [Mycobacterium bovis AF2122/97] 48 more sequence titles Length=260 Score = 525 bits (1351), Expect = 4e-147, Method: Compositional matrix adjust. Identities = 260/260 (100%), Positives = 260/260 (100%), Gaps = 0/260 (0%) Query 1 MEHDVATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSRWLGM 60 MEHDVATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSRWLGM Sbjct 1 MEHDVATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSRWLGM 60 Query 61 PAGLRLTVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVDV 120 PAGLRLTVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVDV Sbjct 61 PAGLRLTVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVDV 120 Query 121 SHPRGAVLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELAI 180 SHPRGAVLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELAI Sbjct 121 SHPRGAVLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELAI 180 Query 181 RKPGESRGTEPNMRPDRNTNARRTAPDTVEINLETKRLGLDQAPVDPQLTFAAQFRTPST 240 RKPGESRGTEPNMRPDRNTNARRTAPDTVEINLETKRLGLDQAPVDPQLTFAAQFRTPST Sbjct 181 RKPGESRGTEPNMRPDRNTNARRTAPDTVEINLETKRLGLDQAPVDPQLTFAAQFRTPST 240 Query 241 VTVDFGSQFCQGERLAGQRR 260 VTVDFGSQFCQGERLAGQRR Sbjct 241 VTVDFGSQFCQGERLAGQRR 260 >gi|289763661|ref|ZP_06523039.1| conserved membrane protein [Mycobacterium tuberculosis GM 1503] gi|289711167|gb|EFD75183.1| conserved membrane protein [Mycobacterium tuberculosis GM 1503] Length=242 Score = 457 bits (1175), Expect = 1e-126, Method: Compositional matrix adjust. Identities = 231/239 (97%), Positives = 232/239 (98%), Gaps = 1/239 (0%) Query 1 MEHDVATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSRWLGM 60 MEHDVATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSRWLGM Sbjct 1 MEHDVATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSRWLGM 60 Query 61 PAGLRLTVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVDV 120 PAGLRLTVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVDV Sbjct 61 PAGLRLTVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVDV 120 Query 121 SHPRGAVLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELAI 180 SHPRGAVLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELAI Sbjct 121 SHPRGAVLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELAI 180 Query 181 RKPGESRGTEPNMRPDRNTNARRTAPDTVEINLETKRLGL-DQAPVDPQLTFAAQFRTP 238 RKPGESRGTEPNMRPDRNTNARRTAPDTV+INLETKRLG A PQLTFAAQFRTP Sbjct 181 RKPGESRGTEPNMRPDRNTNARRTAPDTVKINLETKRLGARSGAGGIPQLTFAAQFRTP 239 >gi|121639401|ref|YP_979625.1| hypothetical protein BCG_3546c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991897|ref|YP_002646586.1| hypothetical protein JTY_3546 [Mycobacterium bovis BCG str. Tokyo 172] gi|121495049|emb|CAL73535.1| BCG_3546c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224775012|dbj|BAH27818.1| hypothetical protein JTY_3546 [Mycobacterium bovis BCG str. Tokyo 172] gi|341603422|emb|CCC66103.1| BCGM3510c [Mycobacterium bovis BCG str. Moreau RDJ] Length=496 Score = 451 bits (1159), Expect = 7e-125, Method: Compositional matrix adjust. Identities = 221/223 (99%), Positives = 222/223 (99%), Gaps = 0/223 (0%) Query 1 MEHDVATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSRWLGM 60 MEHDVATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSRWLGM Sbjct 1 MEHDVATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSRWLGM 60 Query 61 PAGLRLTVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVDV 120 PAGLRLTVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVDV Sbjct 61 PAGLRLTVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVDV 120 Query 121 SHPRGAVLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELAI 180 SHPRGAVLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELAI Sbjct 121 SHPRGAVLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELAI 180 Query 181 RKPGESRGTEPNMRPDRNTNARRTAPDTVEINLETKRLGLDQA 223 RKPGESRGTEPNMRPDRNTNARRTAPDTVEINLETKRLGLD+ Sbjct 181 RKPGESRGTEPNMRPDRNTNARRTAPDTVEINLETKRLGLDRG 223 >gi|167967262|ref|ZP_02549539.1| hypothetical protein MtubH3_04182 [Mycobacterium tuberculosis H37Ra] gi|308232476|ref|ZP_07416168.2| conserved membrane protein [Mycobacterium tuberculosis SUMu001] gi|308370282|ref|ZP_07420898.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002] 22 more sequence titles Length=201 Score = 404 bits (1038), Expect = 7e-111, Method: Compositional matrix adjust. Identities = 201/201 (100%), Positives = 201/201 (100%), Gaps = 0/201 (0%) Query 60 MPAGLRLTVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVD 119 MPAGLRLTVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVD Sbjct 1 MPAGLRLTVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVD 60 Query 120 VSHPRGAVLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELA 179 VSHPRGAVLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELA Sbjct 61 VSHPRGAVLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELA 120 Query 180 IRKPGESRGTEPNMRPDRNTNARRTAPDTVEINLETKRLGLDQAPVDPQLTFAAQFRTPS 239 IRKPGESRGTEPNMRPDRNTNARRTAPDTVEINLETKRLGLDQAPVDPQLTFAAQFRTPS Sbjct 121 IRKPGESRGTEPNMRPDRNTNARRTAPDTVEINLETKRLGLDQAPVDPQLTFAAQFRTPS 180 Query 240 TVTVDFGSQFCQGERLAGQRR 260 TVTVDFGSQFCQGERLAGQRR Sbjct 181 TVTVDFGSQFCQGERLAGQRR 201 >gi|240170032|ref|ZP_04748691.1| hypothetical protein MkanA1_12016 [Mycobacterium kansasii ATCC 12478] Length=250 Score = 311 bits (797), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 146/248 (59%), Positives = 187/248 (76%), Gaps = 0/248 (0%) Query 5 VATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSRWLGMPAGL 64 V TSPPAGWY +PDGS GQRYWDG WT+H R + S RSP +G+R W GMP L Sbjct 3 VPTSPPAGWYFNPDGSGGQRYWDGQHWTKHCRADRSTARSPFRAVANGVRRGWSGMPVAL 62 Query 65 RLTVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVDVSHPR 124 RL +P+A VLT+VG+ W++ DDW++LPK+L+CQL+ GP PP +TVASVDV HPR Sbjct 63 RLLLPIAMVLTLVGIGFAFWVKSPRDDWARLPKQLNCQLQDGPKPPDNLTVASVDVGHPR 122 Query 125 GAVLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELAIRKPG 184 VL+LVVRFA+PLP SP+G+ +SGF GY+LTY++ANNGK+F ELGP+QDTD+LAI + Sbjct 123 SGVLQLVVRFAQPLPQSPAGNHSSGFVGYVLTYSVANNGKKFVELGPEQDTDDLAIVRTQ 182 Query 185 ESRGTEPNMRPDRNTNARRTAPDTVEINLETKRLGLDQAPVDPQLTFAAQFRTPSTVTVD 244 + T+ +MRPDR+TNARR PDT++INLE KRLG++ PV P+LT +QF TPST TV Sbjct 183 DPASTDASMRPDRDTNARRITPDTMQINLELKRLGVENQPVIPELTVDSQFNTPSTTTVQ 242 Query 245 FGSQFCQG 252 + Q C+G Sbjct 243 YAPQVCRG 250 >gi|183984932|ref|YP_001853223.1| hypothetical protein MMAR_4964 [Mycobacterium marinum M] gi|183178258|gb|ACC43368.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=247 Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 143/244 (59%), Positives = 177/244 (73%), Gaps = 0/244 (0%) Query 7 TSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSRWLGMPAGLRL 66 TSPPAGWY DP GS G+RYWDG+RWT H R + RSPLA VDG+R W MP LRL Sbjct 3 TSPPAGWYADPGGSGGRRYWDGERWTEHCRADAGIARSPLAAVVDGVRRGWSAMPLALRL 62 Query 67 TVPVAAVLTMVGVAVYAWIRPLPDDWSQLPKRLSCQLRPGPTPPATITVASVDVSHPRGA 126 +P+A VL G+ V W++ PD+W++LP L C+++ GP PP I VA+V V HP Sbjct 63 LLPIAFVLISAGIGVAFWLQSPPDNWARLPNHLECRMQEGPKPPDQIVVAAVQVEHPSAG 122 Query 127 VLRLVVRFAEPLPPSPSGSFASGFAGYLLTYTIANNGKEFAELGPQQDTDELAIRKPGES 186 VL LV+RFAEPLP SPSGS ASGF GY+LT+++ANNG++F ELGP++DTD+LAI S Sbjct 123 VLELVIRFAEPLPQSPSGSHASGFVGYVLTFSVANNGRKFVELGPEEDTDDLAITATLTS 182 Query 187 RGTEPNMRPDRNTNARRTAPDTVEINLETKRLGLDQAPVDPQLTFAAQFRTPSTVTVDFG 246 G + MRPDR+TNARRTAPDT+EINL+ KRLG++ V P LT +QF TPST TV+F Sbjct 183 NGNDVTMRPDRDTNARRTAPDTIEINLDLKRLGIENQLVVPTLTVDSQFNTPSTTTVEFA 242 Query 247 SQFC 250 SQ C Sbjct 243 SQVC 246 >gi|340772699|gb|EGR95200.1| hypothetical protein HMPREF9205_2066 [Propionibacterium acnes SK182] Length=269 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/207 (29%), Positives = 87/207 (43%), Gaps = 45/207 (21%) Query 6 ATSPPAGWYTDPDGSAGQRYWDGDRWTRHRR--PN--------------------PSAPR 43 AT PP GWY DP GS +RYWDG+RWTR+ R P+ PS+PR Sbjct 4 ATPPPMGWYPDPAGSDQERYWDGERWTRNLRNPPDPQPRPGVSHVPETLAPVSRVPSSPR 63 Query 44 SPLALR----VDGLRSRWLGMPAGL--------RLTVPVAAVLT--MVGVAVYAWIRPLP 89 A+ VD +SRW G+ L+ + AVL +VG+ ++ + + Sbjct 64 PNAAVSRRGDVDRSQSRWGSTADGVPLAGWWWRALSTIIDAVLVWIVVGLTMHETVASIV 123 Query 90 DDWSQLPKRLSCQLRPGPTPPATITVASV-------DVSHPRGAVLRLVVRFAEPLPPSP 142 D + + G +P +T+ S+ D+S+ GAV+ + + + Sbjct 124 DGYQTFLATSMRAVNAGASPSDVVTMQSLMKAGFVSDLSNLVGAVIISQAIYQFIMLAAC 183 Query 143 SGSFASGFAGYLLTYTIANNGKEFAEL 169 +GS G L N GKE L Sbjct 184 AGSVGQLICG--LRVVTLNKGKEHRRL 208 >gi|295131206|ref|YP_003581869.1| RDD family protein [Propionibacterium acnes SK137] gi|291375761|gb|ADD99615.1| RDD family protein [Propionibacterium acnes SK137] Length=279 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/207 (29%), Positives = 87/207 (43%), Gaps = 45/207 (21%) Query 6 ATSPPAGWYTDPDGSAGQRYWDGDRWTRHRR--PN--------------------PSAPR 43 AT PP GWY DP GS +RYWDG+RWTR+ R P+ PS+PR Sbjct 14 ATPPPMGWYPDPAGSDQERYWDGERWTRNLRNPPDPQPRPGVSHVPETLAPVSRVPSSPR 73 Query 44 SPLALR----VDGLRSRWLGMPAGL--------RLTVPVAAVLT--MVGVAVYAWIRPLP 89 A+ VD +SRW G+ L+ + AVL +VG+ ++ + + Sbjct 74 PNAAVSRRGDVDRSQSRWGSTADGVPLAGWWWRALSTIIDAVLVWIVVGLTMHETVASIV 133 Query 90 DDWSQLPKRLSCQLRPGPTPPATITVASV-------DVSHPRGAVLRLVVRFAEPLPPSP 142 D + + G +P +T+ S+ D+S+ GAV+ + + + Sbjct 134 DGYQTFLATSMRAVNAGASPSDVVTMQSLMKAGFVSDLSNLVGAVIISQAIYQFIMLAAC 193 Query 143 SGSFASGFAGYLLTYTIANNGKEFAEL 169 +GS G L N GKE L Sbjct 194 AGSVGQLICG--LRVVTLNKGKEHRRL 218 >gi|328906045|gb|EGG25820.1| RDD family protein [Propionibacterium humerusii P08] Length=286 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 54/211 (26%), Positives = 81/211 (39%), Gaps = 49/211 (23%) Query 6 ATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPN----------------------PSAPR 43 AT PP GWY DP GS +RYWDG+RWTR+ R PS+PR Sbjct 17 ATPPPMGWYPDPAGSDQERYWDGERWTRNLRNQPDPQPRHGANHVPETLAPVSRVPSSPR 76 Query 44 SPLALRVDGL--------RSRWLGMPAGLRL----------TVPVAAVLTMVGVAVYAWI 85 A+ G +SRW G+ L + V +VG+ ++ + Sbjct 77 PSAAVSRRGTADISKSTSQSRWGSTADGIPLAGWWWRALSTIIDATLVWVVVGLTMHEKV 136 Query 86 RPLPDDWSQLPKRLSCQLRPGPTPPATITVASV-------DVSHPRGAVLRLVVRFAEPL 138 + D + + + G +P IT ++ D+S+ GAV+ + + Sbjct 137 ASIVDSYQRFLAESMRAVSAGASPSDVITTRALMEAGFVNDLSNLVGAVIISQAIYQFIM 196 Query 139 PPSPSGSFASGFAGYLLTYTIANNGKEFAEL 169 + +GS G L N GKE L Sbjct 197 LAACAGSVGQLVCG--LRVVAVNKGKEHRRL 225 >gi|340774690|gb|EGR97168.1| hypothetical protein HMPREF1162_2190 [Propionibacterium acnes SK182B-JCVI] Length=279 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/203 (28%), Positives = 79/203 (39%), Gaps = 45/203 (22%) Query 6 ATSPPAGWYTDPDGSAGQRYWDGDRWTRHRR----------------------PNPSAPR 43 AT PP GWY DP GS +RYWDG+RWTR+ R PS+PR Sbjct 14 ATPPPMGWYPDPAGSDQERYWDGERWTRNLRNPPDPQPRHGVGHVPETLAPVSQVPSSPR 73 Query 44 ----SPLALRVDGLRSRWLGMPAG----------LRLTVPVAAVLTMVGVAVYAWIRPLP 89 +P D RSRW G L + A V +VG+ ++ + + Sbjct 74 PGAATPRRGTADRSRSRWGSTTDGVPLAGWWWRALSTVIDAALVWVVVGLTMHEKVAGIF 133 Query 90 DDWSQLPKRLSCQLRPGPTPPATITVASV-------DVSHPRGAVLRLVVRFAEPLPPSP 142 + + + G +P IT S+ D+S+ GAV+ + + + Sbjct 134 NGYQTFLANSMRAINAGASPSDVITTQSLMRAGFVDDLSNLVGAVIISQAIYQFIMLAAC 193 Query 143 SGSFASGFAGYLLTYTIANNGKE 165 +GS G L N GKE Sbjct 194 AGSVGQLMCG--LRVVPLNKGKE 214 >gi|50843146|ref|YP_056373.1| hypothetical protein PPA1684 [Propionibacterium acnes KPA171202] gi|335053928|ref|ZP_08546754.1| RDD family protein [Propionibacterium sp. 434-HC2] gi|50840748|gb|AAT83415.1| hypothetical protein, RDD family [Propionibacterium acnes KPA171202] gi|333765965|gb|EGL43290.1| RDD family protein [Propionibacterium sp. 434-HC2] Length=273 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/38 (64%), Positives = 28/38 (74%), Gaps = 1/38 (2%) Query 6 ATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPR 43 AT PP GWY DP GS +RYWDG+RWTR+ R NP P+ Sbjct 4 ATPPPMGWYPDPAGSEQERYWDGERWTRNLR-NPPDPQ 40 >gi|282855022|ref|ZP_06264354.1| RDD family protein [Propionibacterium acnes J139] gi|282581610|gb|EFB86995.1| RDD family protein [Propionibacterium acnes J139] Length=283 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/38 (64%), Positives = 28/38 (74%), Gaps = 1/38 (2%) Query 6 ATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPR 43 AT PP GWY DP GS +RYWDG+RWTR+ R NP P+ Sbjct 14 ATPPPMGWYPDPAGSEQERYWDGERWTRNLR-NPPDPQ 50 >gi|289427825|ref|ZP_06429534.1| RDD family protein [Propionibacterium acnes J165] gi|289159007|gb|EFD07202.1| RDD family protein [Propionibacterium acnes J165] gi|332676083|gb|AEE72899.1| hypothetical protein PAZ_c17540 [Propionibacterium acnes 266] Length=273 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/38 (64%), Positives = 28/38 (74%), Gaps = 1/38 (2%) Query 6 ATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPR 43 AT PP GWY DP GS +RYWDG+RWTR+ R NP P+ Sbjct 4 ATPPPMGWYPDPAGSDQERYWDGERWTRNLR-NPPDPQ 40 >gi|335052152|ref|ZP_08545047.1| RDD family protein [Propionibacterium sp. 409-HC1] gi|333764804|gb|EGL42189.1| RDD family protein [Propionibacterium sp. 409-HC1] Length=273 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/38 (64%), Positives = 28/38 (74%), Gaps = 1/38 (2%) Query 6 ATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPR 43 AT PP GWY DP GS +RYWDG+RWTR+ R NP P+ Sbjct 4 ATPPPMGWYPDPAGSDQERYWDGERWTRNLR-NPPDPQ 40 >gi|342212265|ref|ZP_08704990.1| hypothetical protein HMPREF9949_2272 [Propionibacterium sp. CC003-HC2] gi|340767809|gb|EGR90334.1| hypothetical protein HMPREF9949_2272 [Propionibacterium sp. CC003-HC2] Length=283 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/38 (64%), Positives = 28/38 (74%), Gaps = 1/38 (2%) Query 6 ATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPR 43 AT PP GWY DP GS +RYWDG+RWTR+ R NP P+ Sbjct 14 ATPPPMGWYPDPAGSDQERYWDGERWTRNLR-NPPDPQ 50 >gi|289424882|ref|ZP_06426661.1| RDD family protein [Propionibacterium acnes SK187] gi|289154581|gb|EFD03267.1| RDD family protein [Propionibacterium acnes SK187] Length=283 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/38 (61%), Positives = 28/38 (74%), Gaps = 1/38 (2%) Query 6 ATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPR 43 AT PP GWY DP GS +RYWDG+RWT++ R NP P+ Sbjct 14 ATPPPMGWYPDPAGSEQERYWDGERWTQNLR-NPPDPQ 50 >gi|336180240|ref|YP_004585615.1| hypothetical protein FsymDg_4445 [Frankia symbiont of Datisca glomerata] gi|334861220|gb|AEH11694.1| Protein of unknown function DUF2510 [Frankia symbiont of Datisca glomerata] Length=275 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/40 (58%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query 7 TSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSA-PRSP 45 T+PPAGWY DP G G RYWDG WT PS P SP Sbjct 4 TTPPAGWYADPSGQHGFRYWDGTTWTDQVSDAPSGQPESP 43 >gi|342239984|gb|AEL19989.1| gp33 [Mycobacterium phage Charlie] Length=113 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/37 (60%), Positives = 24/37 (65%), Gaps = 0/37 (0%) Query 5 VATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSA 41 +A PP GWY DP G GQRYWDG RWT H+ P A Sbjct 3 LAPLPPPGWYPDPAGHGGQRYWDGQRWTGHQAAPPLA 39 >gi|291303667|ref|YP_003514945.1| Scramblase family protein [Stackebrandtia nassauensis DSM 44728] gi|290572887|gb|ADD45852.1| Scramblase family protein [Stackebrandtia nassauensis DSM 44728] Length=279 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/33 (58%), Positives = 23/33 (70%), Gaps = 0/33 (0%) Query 5 VATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRP 37 +A + P GWY DP GS QRYWDG++WT H P Sbjct 1 MAQNTPPGWYPDPQGSGQQRYWDGNQWTPHLNP 33 >gi|229819937|ref|YP_002881463.1| peptidase domain-containing protein [Beutenbergia cavernae DSM 12333] gi|229565850|gb|ACQ79701.1| peptidase domain protein [Beutenbergia cavernae DSM 12333] Length=442 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 26/44 (60%), Gaps = 3/44 (6%) Query 7 TSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPN---PSAPRSPLA 47 ++PPAGW+ DPDG RYWDG WT H + P AP P A Sbjct 2 STPPAGWFPDPDGQDRLRYWDGTAWTEHYAASNEPPGAPSGPAA 45 >gi|84496031|ref|ZP_00994885.1| Chromosome segregation ATPase [Janibacter sp. HTCC2649] gi|84382799|gb|EAP98680.1| Chromosome segregation ATPase [Janibacter sp. HTCC2649] Length=480 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 18/38 (48%), Positives = 22/38 (58%), Gaps = 0/38 (0%) Query 8 SPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSP 45 + P GWY DP+ S R+WDG +WT H P P SP Sbjct 2 TTPQGWYPDPNDSTIIRWWDGQQWTSHTHPRSHEPSSP 39 >gi|302550259|ref|ZP_07302601.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302467877|gb|EFL30970.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length=304 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/42 (48%), Positives = 27/42 (65%), Gaps = 1/42 (2%) Query 5 VATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPL 46 ++ +PP GWY DP G +R+WDG WT HRR P +P P+ Sbjct 1 MSMTPPPGWYPDPHGPHLERWWDGTAWTEHRR-APGSPAGPV 41 >gi|288916577|ref|ZP_06410953.1| Scramblase family protein [Frankia sp. EUN1f] gi|288352008|gb|EFC86209.1| Scramblase family protein [Frankia sp. EUN1f] Length=326 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 17/30 (57%), Positives = 20/30 (67%), Gaps = 0/30 (0%) Query 8 SPPAGWYTDPDGSAGQRYWDGDRWTRHRRP 37 S P GWY DP G G R+WDG+ WT H +P Sbjct 5 STPPGWYDDPSGEPGTRWWDGNAWTSHTQP 34 >gi|29566052|ref|NP_817622.1| gp33 [Mycobacterium phage Bxz2] gi|29424777|gb|AAN01787.1| gp33 [Mycobacterium phage Bxz2] Length=88 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/41 (52%), Positives = 28/41 (69%), Gaps = 1/41 (2%) Query 8 SPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLAL 48 +P AGWY DP G+ GQRY+DG WT H +P P+ P+A+ Sbjct 5 TPAAGWYPDPSGAPGQRYFDGTEWTSHSQPPAHTPQ-PVAV 44 >gi|256396935|ref|YP_003118499.1| ATP/GTP binding protein [Catenulispora acidiphila DSM 44928] gi|256363161|gb|ACU76658.1| ATP/GTP binding protein [Catenulispora acidiphila DSM 44928] Length=664 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/102 (31%), Positives = 45/102 (45%), Gaps = 26/102 (25%) Query 10 PAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSA-------------------PRSPLALRV 50 P GWY DP G+ RYW G +WT RP+ + P++ A+RV Sbjct 12 PPGWYADPSGAPQVRYWTGTKWTERTRPDVQSWVHGPRLVDVPGVFAYGRDPQAAAAVRV 71 Query 51 D------GLRSRWLGMPAGLRLTVPVAAVLTMVGVA-VYAWI 85 LR AG+ L VP + +LT +G++ V W+ Sbjct 72 SREARQRALRYLLYAPLAGVVLAVPASIILTAIGLSGVLLWL 113 >gi|296270641|ref|YP_003653273.1| hypothetical protein Tbis_2679 [Thermobispora bispora DSM 43833] gi|296093428|gb|ADG89380.1| hypothetical protein Tbis_2679 [Thermobispora bispora DSM 43833] Length=322 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/39 (57%), Positives = 26/39 (67%), Gaps = 1/39 (2%) Query 7 TSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSP 45 T+ PAGWY DP GS R+WDG +WT H P P A +SP Sbjct 2 TTTPAGWYPDPYGSPLLRWWDGTQWTEHTHP-PVAGQSP 39 >gi|29833271|ref|NP_827905.1| hypothetical protein SAV_6729 [Streptomyces avermitilis MA-4680] gi|29610393|dbj|BAC74440.1| putative membrane protein [Streptomyces avermitilis MA-4680] Length=310 Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/42 (48%), Positives = 27/42 (65%), Gaps = 1/42 (2%) Query 5 VATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPL 46 ++++PP GWY DP +R+WDG WT HRR P P+ PL Sbjct 1 MSSTPPPGWYRDPSYPLVERWWDGSAWTDHRR-QPETPQEPL 41 >gi|297625954|ref|YP_003687717.1| hypothetical protein PFREUD_07460 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921719|emb|CBL56277.1| Hypothetical protein PFREUD_07460 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length=350 Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust. Identities = 19/30 (64%), Positives = 19/30 (64%), Gaps = 0/30 (0%) Query 7 TSPPAGWYTDPDGSAGQRYWDGDRWTRHRR 36 T PPAGWY DP S QRYWDG WT R Sbjct 20 TLPPAGWYPDPADSGSQRYWDGKDWTNESR 49 >gi|170781672|ref|YP_001710004.1| hypothetical protein CMS_1266 [Clavibacter michiganensis subsp. sepedonicus] gi|169156240|emb|CAQ01382.1| putative membrane protein [Clavibacter michiganensis subsp. sepedonicus] Length=433 Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/43 (49%), Positives = 28/43 (66%), Gaps = 4/43 (9%) Query 5 VATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRP--NPSAPRSP 45 V ++ PAGW+ PDGS RYWDG WT+H P P+A ++P Sbjct 4 VLSAAPAGWF--PDGSGQLRYWDGSAWTQHVAPMVQPAATQAP 44 >gi|337764872|emb|CCB73581.1| Scramblase family protein [Streptomyces cattleya NRRL 8057] Length=325 Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust. Identities = 16/29 (56%), Positives = 20/29 (69%), Gaps = 0/29 (0%) Query 6 ATSPPAGWYTDPDGSAGQRYWDGDRWTRH 34 + SP AGWY DP G+ R+WDG +WT H Sbjct 5 SNSPAAGWYADPHGTPDLRWWDGSQWTEH 33 >gi|148273150|ref|YP_001222711.1| hypothetical protein CMM_1969 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831080|emb|CAN02025.1| hypothetical protein CMM_1969 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length=438 Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust. Identities = 19/34 (56%), Positives = 22/34 (65%), Gaps = 2/34 (5%) Query 4 DVATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRP 37 DV ++ PAGW+ PDGS RYWDG WT H P Sbjct 3 DVPSAAPAGWF--PDGSGQLRYWDGSTWTSHVAP 34 >gi|339755122|gb|AEJ95132.1| gp35 [Mycobacterium phage JHC117] Length=88 Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust. Identities = 18/35 (52%), Positives = 22/35 (63%), Gaps = 0/35 (0%) Query 9 PPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPR 43 P GWY DP G+ GQRY+DG WT H +P P+ Sbjct 6 PQPGWYLDPSGAPGQRYFDGTEWTSHAQPPAHTPQ 40 >gi|118469087|ref|YP_885702.1| hypothetical protein MSMEG_1312 [Mycobacterium smegmatis str. MC2 155] gi|118170374|gb|ABK71270.1| hypothetical protein MSMEG_1312 [Mycobacterium smegmatis str. MC2 155] Length=198 Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust. Identities = 18/28 (65%), Positives = 20/28 (72%), Gaps = 0/28 (0%) Query 7 TSPPAGWYTDPDGSAGQRYWDGDRWTRH 34 +P AGWY DP G GQRY DG RWT+H Sbjct 5 NTPAAGWYPDPSGQPGQRYHDGRRWTQH 32 >gi|111223619|ref|YP_714413.1| hypothetical protein FRAAL4219 [Frankia alni ACN14a] gi|111151151|emb|CAJ62861.1| conserved hypothetical protein (Putative membrane protein) [Frankia alni ACN14a] Length=305 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 17/28 (61%), Positives = 19/28 (68%), Gaps = 1/28 (3%) Query 7 TSPPAGWYTDPDGSAGQRYWDGDRWTRH 34 T PP GWY DP G G R+WDG +WT H Sbjct 4 TIPP-GWYADPSGQHGSRWWDGSQWTEH 30 >gi|339755417|gb|AEJ95424.1| gp35 [Mycobacterium phage Microwolf] gi|339781869|gb|AEK07697.1| gp35 [Mycobacterium phage Vix] Length=88 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query 9 PPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLAL 48 P GWY DP G+ GQRY+DG WT H +P P+ P+A+ Sbjct 6 PQPGWYPDPSGAPGQRYFDGTEWTSHAQPPAHTPQ-PVAV 44 >gi|170782890|ref|YP_001711224.1| hypothetical protein CMS_2568 [Clavibacter michiganensis subsp. sepedonicus] gi|169157460|emb|CAQ02649.1| putative membrane protein [Clavibacter michiganensis subsp. sepedonicus] Length=272 Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust. Identities = 18/27 (67%), Positives = 19/27 (71%), Gaps = 0/27 (0%) Query 8 SPPAGWYTDPDGSAGQRYWDGDRWTRH 34 S PAGWY DP GS R+WDG RWT H Sbjct 9 STPAGWYADPAGSDRLRWWDGTRWTDH 35 >gi|336119543|ref|YP_004574320.1| hypothetical protein MLP_39030 [Microlunatus phosphovorus NM-1] gi|334687332|dbj|BAK36917.1| hypothetical protein MLP_39030 [Microlunatus phosphovorus NM-1] Length=297 Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust. Identities = 16/28 (58%), Positives = 21/28 (75%), Gaps = 0/28 (0%) Query 10 PAGWYTDPDGSAGQRYWDGDRWTRHRRP 37 P+GWY DP A +RYWDG +W+R+ RP Sbjct 19 PSGWYPDPVNPANERYWDGWQWSRNTRP 46 >gi|302540891|ref|ZP_07293233.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC 53653] gi|302458509|gb|EFL21602.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC 53653] Length=295 Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust. Identities = 17/29 (59%), Positives = 20/29 (69%), Gaps = 1/29 (3%) Query 10 PAGWYTDPDGSAGQ-RYWDGDRWTRHRRP 37 PAGWY DP G+ Q R+WDG +WT H P Sbjct 8 PAGWYADPQGTPNQLRWWDGAQWTEHTHP 36 >gi|148271744|ref|YP_001221305.1| hypothetical protein CMM_0565 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829674|emb|CAN00590.1| putative membrane protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length=275 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 18/27 (67%), Positives = 19/27 (71%), Gaps = 0/27 (0%) Query 8 SPPAGWYTDPDGSAGQRYWDGDRWTRH 34 S PAGWY DP GS R+WDG RWT H Sbjct 9 STPAGWYADPAGSDRLRWWDGTRWTDH 35 >gi|120401780|ref|YP_951609.1| hypothetical protein Mvan_0765 [Mycobacterium vanbaalenii PYR-1] gi|119954598|gb|ABM11603.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=230 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 29/81 (36%), Positives = 39/81 (49%), Gaps = 20/81 (24%) Query 7 TSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSRWLGMPA---- 62 T P AGWY DP + QRY+DG WT + P P+ P +G PA Sbjct 2 TQPTAGWYPDPSDPSRQRYFDGKTWTENYAPFPAPPPG-------------IGQPAKPGM 48 Query 63 --GLRLTVPV-AAVLTMVGVA 80 GL++ + V AAVL +V + Sbjct 49 SRGLKIGLGVGAAVLALVAIG 69 >gi|226360799|ref|YP_002778577.1| hypothetical protein ROP_13850 [Rhodococcus opacus B4] gi|226239284|dbj|BAH49632.1| hypothetical protein [Rhodococcus opacus B4] Length=209 Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust. Identities = 31/79 (40%), Positives = 38/79 (49%), Gaps = 12/79 (15%) Query 4 DVATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSRWLGMPAG 63 D A PAGWY DP G GQRYWDG +W P+PS P+ A + L +W Sbjct 3 DDAHVTPAGWYPDPSG--GQRYWDGAKWL--DLPDPS-PKLEAAGKTKRLPKKW------ 51 Query 64 LRLTVPVAAVLTMVGVAVY 82 + VA VL G A + Sbjct 52 -AIGALVALVLICAGGATW 69 >gi|29566148|ref|NP_817717.1| gp39 [Mycobacterium phage Che9c] gi|29424873|gb|AAN12600.1| gp39 [Mycobacterium phage Che9c] Length=132 Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust. Identities = 17/24 (71%), Positives = 20/24 (84%), Gaps = 0/24 (0%) Query 9 PPAGWYTDPDGSAGQRYWDGDRWT 32 PPAGWY DPDG+ QRY+DG +WT Sbjct 11 PPAGWYPDPDGAPTQRYFDGKKWT 34 >gi|21220107|ref|NP_625886.1| hypothetical protein SCO1610 [Streptomyces coelicolor A3(2)] gi|3581865|emb|CAA20821.1| putative membrane protein [Streptomyces coelicolor A3(2)] Length=319 Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust. Identities = 16/29 (56%), Positives = 19/29 (66%), Gaps = 0/29 (0%) Query 8 SPPAGWYTDPDGSAGQRYWDGDRWTRHRR 36 +PP GWY DP +R+WDG WT HRR Sbjct 2 TPPPGWYRDPSAPHQERWWDGTAWTEHRR 30 >gi|289772678|ref|ZP_06532056.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|289702877|gb|EFD70306.1| conserved hypothetical protein [Streptomyces lividans TK24] Length=319 Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust. Identities = 16/29 (56%), Positives = 19/29 (66%), Gaps = 0/29 (0%) Query 8 SPPAGWYTDPDGSAGQRYWDGDRWTRHRR 36 +PP GWY DP +R+WDG WT HRR Sbjct 2 TPPPGWYRDPSAPHQERWWDGTAWTEHRR 30 >gi|323359225|ref|YP_004225621.1| PPE-repeat proteins [Microbacterium testaceum StLB037] gi|323275596|dbj|BAJ75741.1| PPE-repeat proteins [Microbacterium testaceum StLB037] Length=393 Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust. Identities = 18/30 (60%), Positives = 19/30 (64%), Gaps = 0/30 (0%) Query 8 SPPAGWYTDPDGSAGQRYWDGDRWTRHRRP 37 +PP GWY DP GS G R WDG WT RP Sbjct 6 TPPDGWYPDPAGSGGTRRWDGIAWTDEVRP 35 >gi|72162667|ref|YP_290324.1| hypothetical protein Tfu_2268 [Thermobifida fusca YX] gi|71916399|gb|AAZ56301.1| hypothetical protein Tfu_2268 [Thermobifida fusca YX] Length=553 Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust. Identities = 16/27 (60%), Positives = 20/27 (75%), Gaps = 1/27 (3%) Query 12 GWYTDPDGSAGQ-RYWDGDRWTRHRRP 37 GWY DP+G+ GQ R+W+G WT H RP Sbjct 22 GWYADPEGAPGQLRWWNGSEWTHHVRP 48 >gi|332671414|ref|YP_004454422.1| hypothetical protein Celf_2913 [Cellulomonas fimi ATCC 484] gi|332340452|gb|AEE47035.1| Protein of unknown function DUF2510 [Cellulomonas fimi ATCC 484] Length=139 Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust. Identities = 22/52 (43%), Positives = 30/52 (58%), Gaps = 3/52 (5%) Query 5 VATSPPAGWYTDPDGSAGQRYWDGDRWTRHRRPNPSAPRSPLALRVDGLRSR 56 +A AGWY PDGS R+WDG WT +P P+APR+ + VD + + Sbjct 1 MAVDAQAGWY--PDGSGAMRWWDGRVWTDQVQP-PAAPRAGIGGVVDKIEAE 49 >gi|183981133|ref|YP_001849424.1| hypothetical protein MMAR_1113 [Mycobacterium marinum M] gi|183174459|gb|ACC39569.1| conserved hypothetical transmembrane protein [Mycobacterium marinum M] Length=156 Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust. Identities = 20/31 (65%), Positives = 20/31 (65%), Gaps = 1/31 (3%) Query 7 TSPPAGWYTDPDGSAGQRYWDGDRWTRHRRP 37 S PAGWY DP G AGQRYWDG WT P Sbjct 123 VSMPAGWYPDPHG-AGQRYWDGTTWTNWTHP 152 >gi|329939058|ref|ZP_08288432.1| putative membrane protein [Streptomyces griseoaurantiacus M045] gi|329301943|gb|EGG45836.1| putative membrane protein [Streptomyces griseoaurantiacus M045] Length=323 Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 22/32 (69%), Gaps = 0/32 (0%) Query 5 VATSPPAGWYTDPDGSAGQRYWDGDRWTRHRR 36 ++++PP GWY DP +R+WDG WT HRR Sbjct 1 MSSAPPPGWYRDPSYPLSERWWDGTAWTDHRR 32 >gi|297203761|ref|ZP_06921158.1| scramblase [Streptomyces sviceus ATCC 29083] gi|197711810|gb|EDY55844.1| scramblase [Streptomyces sviceus ATCC 29083] Length=287 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 17/29 (59%), Positives = 21/29 (73%), Gaps = 1/29 (3%) Query 7 TSPPAGWYTDPDGSAGQ-RYWDGDRWTRH 34 ++ PAGWY DP G+A RYWDG +WT H Sbjct 5 SNTPAGWYPDPHGAAQTLRYWDGAQWTSH 33 Lambda K H 0.318 0.135 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 385409777106 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40