BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3484 Length=512 Score E Sequences producing significant alignments: (Bits) Value gi|15843096|ref|NP_338133.1| hypothetical protein MT3588 [Mycoba... 1039 0.0 gi|15610620|ref|NP_218001.1| hypothetical protein Rv3484 [Mycoba... 1038 0.0 gi|340628452|ref|YP_004746904.1| hypothetical protein MCAN_34981... 1036 0.0 gi|289755615|ref|ZP_06514993.1| conserved hypothetical protein [... 1035 0.0 gi|308371364|ref|ZP_07424705.2| hypothetical protein cpsA [Mycob... 1011 0.0 gi|15828200|ref|NP_302463.1| hypothetical protein ML2247 [Mycoba... 787 0.0 gi|342862222|ref|ZP_08718864.1| cell envelope-related function t... 783 0.0 gi|183984934|ref|YP_001853225.1| membrane protein CpsA [Mycobact... 783 0.0 gi|240170034|ref|ZP_04748693.1| membrane protein CpsA [Mycobacte... 775 0.0 gi|118465330|ref|YP_879952.1| cell envelope-related function tra... 771 0.0 gi|118619234|ref|YP_907566.1| membrane protein CpsA [Mycobacteri... 771 0.0 gi|41406677|ref|NP_959513.1| CpsA [Mycobacterium avium subsp. pa... 771 0.0 gi|336458385|gb|EGO37361.1| cell envelope-related function trans... 769 0.0 gi|254821771|ref|ZP_05226772.1| CpsA [Mycobacterium intracellula... 769 0.0 gi|254773629|ref|ZP_05215145.1| CpsA [Mycobacterium avium subsp.... 769 0.0 gi|296166516|ref|ZP_06848947.1| CpsA protein [Mycobacterium para... 742 0.0 gi|289759644|ref|ZP_06519022.1| hypothetical protein TBEG_03125 ... 741 0.0 gi|169627663|ref|YP_001701312.1| hypothetical protein MAB_0560 [... 551 8e-155 gi|296139021|ref|YP_003646264.1| cell envelope-related transcrip... 420 3e-115 gi|317506895|ref|ZP_07964667.1| hypothetical protein HMPREF9336_... 390 4e-106 gi|296393723|ref|YP_003658607.1| cell envelope-related transcrip... 377 3e-102 gi|337769622|emb|CCB78335.1| putative LytR family regulatory pro... 345 9e-93 gi|229489836|ref|ZP_04383693.1| transcriptional regulator, LytR ... 345 1e-92 gi|226304103|ref|YP_002764061.1| LytR family regulatory protein ... 340 3e-91 gi|311893633|dbj|BAJ26041.1| putative lytR family regulatory pro... 325 1e-86 gi|254383119|ref|ZP_04998473.1| CpsA [Streptomyces sp. Mg1] >gi|... 320 5e-85 gi|326384579|ref|ZP_08206258.1| hypothetical protein SCNU_16643 ... 311 2e-82 gi|257056864|ref|YP_003134696.1| cell envelope-related function ... 309 8e-82 gi|325672920|ref|ZP_08152614.1| CpsA protein [Rhodococcus equi A... 301 2e-79 gi|312141818|ref|YP_004009154.1| LytR family transcripiotnal reg... 297 3e-78 gi|302526463|ref|ZP_07278805.1| transcriptional regulator [Strep... 296 5e-78 gi|118473313|ref|YP_884523.1| cell envelope-related function tra... 295 2e-77 gi|300789507|ref|YP_003769798.1| LytR family transcriptional reg... 293 7e-77 gi|302529696|ref|ZP_07282038.1| LytR family transcriptional regu... 290 5e-76 gi|256397863|ref|YP_003119427.1| cell envelope-related transcrip... 290 6e-76 gi|256375179|ref|YP_003098839.1| cell envelope-related transcrip... 287 2e-75 gi|324997824|ref|ZP_08118936.1| cell envelope-related function t... 285 1e-74 gi|254822358|ref|ZP_05227359.1| cell envelope-related function t... 284 2e-74 gi|256396226|ref|YP_003117790.1| cell envelope-related transcrip... 282 1e-73 gi|41409663|ref|NP_962499.1| hypothetical protein MAP3565 [Mycob... 281 2e-73 gi|118465380|ref|YP_884265.1| cell envelope-related function tra... 280 4e-73 gi|213964851|ref|ZP_03393050.1| transcriptional regulator, LytR ... 278 2e-72 gi|291006156|ref|ZP_06564129.1| transcriptional regulator [Sacch... 270 5e-70 gi|134099455|ref|YP_001105116.1| transcriptional regulator [Sacc... 269 8e-70 gi|169630541|ref|YP_001704190.1| hypothetical protein MAB_3460c ... 266 7e-69 gi|342859419|ref|ZP_08716073.1| cell envelope-related function t... 261 2e-67 gi|302530396|ref|ZP_07282738.1| conserved hypothetical protein [... 260 5e-67 gi|256391109|ref|YP_003112673.1| cell envelope-related transcrip... 259 6e-67 gi|302524294|ref|ZP_07276636.1| predicted protein [Streptomyces ... 258 1e-66 gi|331698966|ref|YP_004335205.1| cell envelope-related transcrip... 258 2e-66 >gi|15843096|ref|NP_338133.1| hypothetical protein MT3588 [Mycobacterium tuberculosis CDC1551] gi|254234071|ref|ZP_04927396.1| hypothetical protein cpsA [Mycobacterium tuberculosis C] gi|308232478|ref|ZP_07416170.2| hypothetical protein cpsA [Mycobacterium tuberculosis SUMu001] 18 more sequence titles Length=513 Score = 1039 bits (2686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/512 (100%), Positives = 512/512 (100%), Gaps = 0/512 (0%) Query 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL Sbjct 2 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 61 Query 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA Sbjct 62 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 121 Query 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE Sbjct 122 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 181 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR Sbjct 182 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 241 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR Sbjct 242 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 301 Query 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG Sbjct 302 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 361 Query 361 SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTT 420 SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTT Sbjct 362 SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTT 421 Query 421 AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE 480 AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE Sbjct 422 AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE 481 Query 481 TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN Sbjct 482 TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 513 >gi|15610620|ref|NP_218001.1| hypothetical protein Rv3484 [Mycobacterium tuberculosis H37Rv] gi|31794660|ref|NP_857153.1| hypothetical protein Mb3514 [Mycobacterium bovis AF2122/97] gi|121639403|ref|YP_979627.1| putative protein cpsA [Mycobacterium bovis BCG str. Pasteur 1173P2] 47 more sequence titles Length=512 Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/512 (100%), Positives = 512/512 (100%), Gaps = 0/512 (0%) Query 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL Sbjct 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 Query 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA Sbjct 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 Query 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE Sbjct 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR Sbjct 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR Sbjct 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 Query 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG Sbjct 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 Query 361 SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTT 420 SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTT Sbjct 361 SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTT 420 Query 421 AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE 480 AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE Sbjct 421 AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE 480 Query 481 TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN Sbjct 481 TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 >gi|340628452|ref|YP_004746904.1| hypothetical protein MCAN_34981 [Mycobacterium canettii CIPT 140010059] gi|340006642|emb|CCC45829.1| putative conserved protein CPSA [Mycobacterium canettii CIPT 140010059] Length=512 Score = 1036 bits (2678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/512 (99%), Positives = 511/512 (99%), Gaps = 0/512 (0%) Query 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGAL GITISQAL Sbjct 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALDGITISQAL 60 Query 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA Sbjct 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 Query 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE Sbjct 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR Sbjct 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR Sbjct 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 Query 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG Sbjct 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 Query 361 SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTT 420 SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTT Sbjct 361 SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTT 420 Query 421 AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE 480 AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE Sbjct 421 AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE 480 Query 481 TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN Sbjct 481 TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 >gi|289755615|ref|ZP_06514993.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289696202|gb|EFD63631.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length=512 Score = 1035 bits (2675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 510/512 (99%), Positives = 511/512 (99%), Gaps = 0/512 (0%) Query 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL Sbjct 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 Query 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA Sbjct 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 Query 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE Sbjct 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR Sbjct 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVA Sbjct 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAH 300 Query 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG Sbjct 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 Query 361 SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTT 420 SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVR+RESGDPFTT Sbjct 361 SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRNRESGDPFTT 420 Query 421 AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE 480 AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE Sbjct 421 AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE 480 Query 481 TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN Sbjct 481 TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 >gi|308371364|ref|ZP_07424705.2| hypothetical protein cpsA [Mycobacterium tuberculosis SUMu003] gi|308373761|ref|ZP_07433583.2| hypothetical protein cpsA [Mycobacterium tuberculosis SUMu005] gi|308374894|ref|ZP_07437771.2| hypothetical protein cpsA [Mycobacterium tuberculosis SUMu006] gi|308329019|gb|EFP17870.1| hypothetical protein cpsA [Mycobacterium tuberculosis SUMu003] gi|308336490|gb|EFP25341.1| hypothetical protein cpsA [Mycobacterium tuberculosis SUMu005] gi|308340368|gb|EFP29219.1| hypothetical protein cpsA [Mycobacterium tuberculosis SUMu006] Length=499 Score = 1011 bits (2614), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/499 (99%), Positives = 499/499 (100%), Gaps = 0/499 (0%) Query 14 VPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNMN 73 +PQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNMN Sbjct 1 MPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNMN 60 Query 74 ILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADGKVVAFSIPRDD 133 ILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADGKVVAFSIPRDD Sbjct 61 ILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADGKVVAFSIPRDD 120 Query 134 WVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRSL 193 WVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRSL Sbjct 121 WVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRSL 180 Query 194 TGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVR 253 TGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVR Sbjct 181 TGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVR 240 Query 254 QRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDL 313 QRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDL Sbjct 241 QRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDL 300 Query 314 FRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFGSAPPTSQTAAAAK 373 FRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFGSAPPTSQTAAAAK Sbjct 301 FRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFGSAPPTSQTAAAAK 360 Query 374 PNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYGAGAETDAQ 433 PNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYGAGAETDAQ Sbjct 361 PNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYGAGAETDAQ 420 Query 434 NVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTETSTYPLYGGGTTT 493 NVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTETSTYPLYGGGTTT Sbjct 421 NVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTETSTYPLYGGGTTT 480 Query 494 DPTPDQGAPIDGGGVPCVN 512 DPTPDQGAPIDGGGVPCVN Sbjct 481 DPTPDQGAPIDGGGVPCVN 499 >gi|15828200|ref|NP_302463.1| hypothetical protein ML2247 [Mycobacterium leprae TN] gi|221230677|ref|YP_002504093.1| hypothetical protein MLBr_02247 [Mycobacterium leprae Br4923] gi|699382|gb|AAA63142.1| cpsA [Mycobacterium leprae] gi|13093754|emb|CAC31203.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933784|emb|CAR72345.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=516 Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/518 (75%), Positives = 439/518 (85%), Gaps = 8/518 (1%) Query 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 MARS R RHRA+ +PSRIR L+R MTL S VA+L+TGAGYWVAH AL IT+SQAL Sbjct 1 MARSHNPRHRHRAIHKPSRIRIALTRSFMTLTSFVAVLLTGAGYWVAHRALEDITVSQAL 60 Query 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 T +DPRS+ NN+NILLIGLDSRKDQ+GNDLPWS+LKQLHAGDS+DGGYNTNTLILVHVGA Sbjct 61 TTDDPRSTDNNINILLIGLDSRKDQQGNDLPWSILKQLHAGDSNDGGYNTNTLILVHVGA 120 Query 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 D K VAFSIPRDDWVPF+ VPGYNHIKIKEAYGLTKQYV ++L +QGV+D+KELET+GRE Sbjct 121 DNKAVAFSIPRDDWVPFSDVPGYNHIKIKEAYGLTKQYVTQKLIDQGVTDQKELETQGRE 180 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 A RAATLR VRSLTGV IDYFAE+NLAGFYDL TLGGV+VCLNHAVYDSYSGADFPAGR Sbjct 181 AGRAATLRIVRSLTGVSIDYFAEVNLAGFYDLTHTLGGVEVCLNHAVYDSYSGADFPAGR 240 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 QRL+A++ALAFVRQRHGLDNGDLDRTHRQQAF+SSVMREL D+GTFTNLD+L +LMAVAR Sbjct 241 QRLDASEALAFVRQRHGLDNGDLDRTHRQQAFISSVMRELGDTGTFTNLDKLRSLMAVAR 300 Query 301 KDVVLSAGWDEDLFRRMGDLAG----GNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVA 356 KDVVLSAGW+EDL +R+G LA +FRTLPVVRYDNI+GQ VNIIDP AI+AEVA Sbjct 301 KDVVLSAGWNEDLIQRLGTLANDVGENRTQFRTLPVVRYDNINGQAVNIIDPVAIKAEVA 360 Query 357 AAFGSAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGD 416 + G+A P TA +KPNPSTVVDV+NAG ++GLAS+V L K GYTAGQVRDR SG+ Sbjct 361 STIGTASPA--TATPSKPNPSTVVDVINAGRLTGLASEVFQTLKKHGYTAGQVRDRSSGE 418 Query 417 PFTTAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATA-- 474 P TT+I+YGAGA+TDAQNVA LL IDAPN DP +A GHIRV VDTN+SLPA +++T Sbjct 419 PTTTSIQYGAGADTDAQNVATLLSIDAPNQADPKLASGHIRVIVDTNYSLPADEDSTMDE 478 Query 475 AATSTETSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 TS + TYP Y T+ PTPDQG PIDGGG+PCVN Sbjct 479 TITSQKVGTYPPYSYNTSPYPTPDQGKPIDGGGIPCVN 516 >gi|342862222|ref|ZP_08718864.1| cell envelope-related function transcriptional attenuator [Mycobacterium colombiense CECT 3035] gi|342130300|gb|EGT83620.1| cell envelope-related function transcriptional attenuator [Mycobacterium colombiense CECT 3035] Length=521 Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/521 (77%), Positives = 451/521 (87%), Gaps = 9/521 (1%) Query 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 MARS G RHRAV QPSR RK L+R + LVSV A+ +TGAGY+VAHGALGGIT+S AL Sbjct 1 MARSGGAHRRHRAVRQPSRFRKGLTRTLGALVSVAAVGLTGAGYYVAHGALGGITVSNAL 60 Query 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 P+DPRSSG+NMNILLIGLDSRKDQ+GNDLP S+LK LHAGDSDDGGYNTNT+ILVHV A Sbjct 61 QPDDPRSSGDNMNILLIGLDSRKDQDGNDLPNSILKHLHAGDSDDGGYNTNTMILVHVSA 120 Query 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 D +VVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVA++LANQG S +KELET+GRE Sbjct 121 DNRVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAQKLANQGNSTQKELETKGRE 180 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 A RAATLRAVR+LTGVPIDYFAE+NLAGF+DLAQTLGGVDVCLNH VYDSYSGADFPAGR Sbjct 181 AGRAATLRAVRNLTGVPIDYFAEVNLAGFFDLAQTLGGVDVCLNHPVYDSYSGADFPAGR 240 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 QRL+A++AL+FVRQRHGLDNGDLDRTHRQQAF+SSVM+ELQ SGTFTN+D+L NLMAVAR Sbjct 241 QRLDASEALSFVRQRHGLDNGDLDRTHRQQAFISSVMQELQASGTFTNIDKLKNLMAVAR 300 Query 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 KDVVLSAGW++D+ +R+G LAGGNVEFRTLPVVRYD IDGQDVNI+DP AIR+EVAAA G Sbjct 301 KDVVLSAGWNDDMIQRLGGLAGGNVEFRTLPVVRYDTIDGQDVNIVDPAAIRSEVAAAIG 360 Query 361 S-APPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFT 419 S T+ A KP+PSTVVDVVNAGS+SG AS+VS AL K+GYT GQVRDRESGDP T Sbjct 361 SDTTTTAPATTAVKPDPSTVVDVVNAGSMSGQASEVSRALKKKGYTPGQVRDRESGDPTT 420 Query 420 TAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEA------- 472 T +EYGAGA+TDAQN+A LLG+DAP P P+VA GHIR+TVDTNFS+P PDE Sbjct 421 TTVEYGAGAQTDAQNLATLLGVDAPKQPSPSVAAGHIRLTVDTNFSMPTPDETQMDDSTS 480 Query 473 -TAAATSTETSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 +++ T++ + Y G TTT PTPDQG PIDGGGVPCVN Sbjct 481 TSSSTTTSTKAKSYYYNGTTTTYPTPDQGKPIDGGGVPCVN 521 >gi|183984934|ref|YP_001853225.1| membrane protein CpsA [Mycobacterium marinum M] gi|183178260|gb|ACC43370.1| conserved hypothetical membrane protein CpsA [Mycobacterium marinum M] Length=511 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/512 (78%), Positives = 439/512 (86%), Gaps = 12/512 (2%) Query 8 RPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRS 67 + RHRAV +PS IR+R+SR +MTLVSVVAL MTGAGYWVAHGAL GITISQALT EDPRS Sbjct 5 KARHRAVRKPSPIRRRVSRTLMTLVSVVALGMTGAGYWVAHGALTGITISQALTAEDPRS 64 Query 68 SGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADGKVVAF 127 +GNNMNILLIGLDSRKDQEGNDLPWS+LK LHAGDSD GGYNTNTLILVHV ADGKVVAF Sbjct 65 TGNNMNILLIGLDSRKDQEGNDLPWSILKHLHAGDSDQGGYNTNTLILVHVSADGKVVAF 124 Query 128 SIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATL 187 SIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVA++L +QGV+ ++ELETRGREA RAATL Sbjct 125 SIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAQELIDQGVTSQRELETRGREAGRAATL 184 Query 188 RAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQ 247 RAVR+LTGVPIDYFAE+NLAGFYDLAQ LGGV+VCLNHAV DSYSGADFPAGRQRL+AAQ Sbjct 185 RAVRALTGVPIDYFAEVNLAGFYDLAQALGGVEVCLNHAVDDSYSGADFPAGRQRLDAAQ 244 Query 248 ALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSA 307 ALAFVRQRHGLDNGDLDRTHRQQAFLSSVMR+LQDSGTFTNLDRLD+LMAVARKD+VLS Sbjct 245 ALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRDLQDSGTFTNLDRLDSLMAVARKDLVLSG 304 Query 308 GWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDP-TAIRAEVAAAFGSAPPTS 366 GWDEDL RRMG+LAG ++EFRTLPVVRYDNIDGQDVNI+DP AA ++ + Sbjct 305 GWDEDLIRRMGELAGADIEFRTLPVVRYDNIDGQDVNIVDPAAIKAEVAAAIGTTSTAAT 364 Query 367 QTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYGA 426 T AKP+PSTVVDVVNAGSISGLASQVS AL KRGYT QVRDR+SGDP T I+YG Sbjct 365 ATTTPAKPSPSTVVDVVNAGSISGLASQVSNALRKRGYTTDQVRDRKSGDPAATTIKYGP 424 Query 427 GAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTETSTYP- 485 GA+ DA N+ LLGIDAP PD ++ PGHI+VTVDTNFS+PAP + +T+TYP Sbjct 425 GAQADAMNLGTLLGIDAPKQPDASIEPGHIQVTVDTNFSMPAP-----DDSDDDTTTYPK 479 Query 486 ---LYGGG--TTTDPTPDQGAPIDGGGVPCVN 512 Y GG +++ P PD G PIDGGGVPCVN Sbjct 480 PNAYYNGGDDSSSYPAPDHGQPIDGGGVPCVN 511 >gi|240170034|ref|ZP_04748693.1| membrane protein CpsA [Mycobacterium kansasii ATCC 12478] Length=534 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/523 (80%), Positives = 449/523 (86%), Gaps = 24/523 (4%) Query 13 AVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNM 72 AV QPS +R+RLSR +MTLVSVVAL MTGAGYWVAHGALGGITISQALT EDPRS+GNNM Sbjct 13 AVRQPSSLRRRLSRSLMTLVSVVALGMTGAGYWVAHGALGGITISQALTAEDPRSTGNNM 72 Query 73 NILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADGKVVAFSIPRD 132 NILLIGLDSRKDQEGNDLPWS+LK LHAGDSD GGYNTNTLILVHVGADGKVVAFSIPRD Sbjct 73 NILLIGLDSRKDQEGNDLPWSILKHLHAGDSDQGGYNTNTLILVHVGADGKVVAFSIPRD 132 Query 133 DWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRS 192 DWVPF GVPGYNHIKIKEAYGLTKQYVA+QLANQGVS ++ELETRGREA RAATLRAVRS Sbjct 133 DWVPFAGVPGYNHIKIKEAYGLTKQYVAQQLANQGVSSQRELETRGREAGRAATLRAVRS 192 Query 193 LTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFV 252 LTGVPIDYFAE+NLAGFYDLA+TLGGV+VCLNHAV DSYSGADFPAG QRL+AAQALAFV Sbjct 193 LTGVPIDYFAEVNLAGFYDLAETLGGVEVCLNHAVSDSYSGADFPAGLQRLDAAQALAFV 252 Query 253 RQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDED 312 RQRHGLDNGDLDRTHRQQAFLSSVM +LQDSGTFTNLDRLD+LMAVARKDVVLSAGWD+D Sbjct 253 RQRHGLDNGDLDRTHRQQAFLSSVMHDLQDSGTFTNLDRLDSLMAVARKDVVLSAGWDQD 312 Query 313 LFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAF-GSAPPTSQTAAA 371 LFRRMG+LAGGNVEFRTLPVVRYDNIDGQDVNIIDP AI+AEVAAA AP + T A Sbjct 313 LFRRMGELAGGNVEFRTLPVVRYDNIDGQDVNIIDPAAIKAEVAAAIGTGAPAATTTTPA 372 Query 372 AKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYGAGAETD 431 AKP+PSTVVDVVNAGSISG+ASQVS AL K GYTAGQVRDR++GDP T+ I+YG G +TD Sbjct 373 AKPDPSTVVDVVNAGSISGMASQVSSALRKHGYTAGQVRDRQAGDPSTSTIKYGTGTQTD 432 Query 432 AQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEA------------------- 472 AQN+A LLG+D DP +APGHI++TVDT+F++PA DE+ Sbjct 433 AQNLASLLGVDTLK-ADPGLAPGHIQLTVDTDFAMPALDESQETSATTTSTGTTGTTGTT 491 Query 473 --TAAATSTETSTYPLYGGGTT-TDPTPDQGAPIDGGGVPCVN 512 T +TE Y GGTT T PTPD G PIDGGGVPCVN Sbjct 492 GTTGTTGTTENKYNTYYSGGTTSTYPTPDHGMPIDGGGVPCVN 534 >gi|118465330|ref|YP_879952.1| cell envelope-related function transcriptional attenuator [Mycobacterium avium 104] gi|118166617|gb|ABK67514.1| cell envelope-related function transcriptional attenuator domain protein [Mycobacterium avium 104] Length=521 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/520 (76%), Positives = 453/520 (88%), Gaps = 8/520 (1%) Query 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 MARS G RHRAV QPSR RK L+R + LVSV A+ +TGAGY+VAHGALGGIT+S AL Sbjct 2 MARSGGAHRRHRAVRQPSRFRKGLTRTLGALVSVAAIGLTGAGYYVAHGALGGITVSNAL 61 Query 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 P+DPRSSG+NMNILLIGLDSRKDQ+GNDLP+S+LK LHAGDSDDGGYNTNTLILVHV A Sbjct 62 QPDDPRSSGDNMNILLIGLDSRKDQDGNDLPYSILKHLHAGDSDDGGYNTNTLILVHVSA 121 Query 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 D KVVAFSIPRDDWVPF+GVPGYNHIKIKEAYGLTKQYVA++LANQG S +KELET+GRE Sbjct 122 DNKVVAFSIPRDDWVPFSGVPGYNHIKIKEAYGLTKQYVAQKLANQGTSSQKELETKGRE 181 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 A RAATLRAVR+LTGVPIDYFAE+NLAGFYDLAQTLGGV+VCLNH VYDSYSGADFPAGR Sbjct 182 AGRAATLRAVRNLTGVPIDYFAEVNLAGFYDLAQTLGGVEVCLNHPVYDSYSGADFPAGR 241 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 QRL+A++AL+FVRQRHGLDNGDLDRTHRQQAF+SSVM+ELQ +GTFTN+D+L NLMAVAR Sbjct 242 QRLDASEALSFVRQRHGLDNGDLDRTHRQQAFISSVMQELQAAGTFTNIDKLKNLMAVAR 301 Query 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 KDVVLSAGW +D+ +R+G LAGGN+EFRTLPVVRYDNIDGQDVNI+DP AI+AEVAAA G Sbjct 302 KDVVLSAGWTDDMIQRLGGLAGGNIEFRTLPVVRYDNIDGQDVNIVDPAAIKAEVAAAIG 361 Query 361 SAPPTSQ-TAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFT 419 + PTS T+ + P+PSTVVDVVN+GS+SGLAS+VS AL KRGYT GQVRDRESGDP Sbjct 362 ADAPTSAPTSTSVAPDPSTVVDVVNSGSMSGLASEVSHALKKRGYTTGQVRDRESGDPAA 421 Query 420 TAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLP-------APDEA 472 T IEYGAGA+ DA+N+A+LL +DAPN P P++APGHIR+TVDTNF++P + Sbjct 422 TTIEYGAGAQNDARNLANLLSLDAPNQPSPSIAPGHIRLTVDTNFTMPTTDDTQLDDTTS 481 Query 473 TAAATSTETSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 T++ T++ + Y G TTT PTPDQG PIDGGGVPCVN Sbjct 482 TSSTTTSSKAKTYYYNGTTTTYPTPDQGKPIDGGGVPCVN 521 >gi|118619234|ref|YP_907566.1| membrane protein CpsA [Mycobacterium ulcerans Agy99] gi|118571344|gb|ABL06095.1| conserved hypothetical membrane protein CpsA [Mycobacterium ulcerans Agy99] Length=491 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/496 (80%), Positives = 432/496 (88%), Gaps = 12/496 (2%) Query 24 LSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNMNILLIGLDSRK 83 +SR +MTLVSVVAL MTGAGYWVAHGAL GITISQALT EDPRS+GNNMNILLIGLDSRK Sbjct 1 MSRILMTLVSVVALGMTGAGYWVAHGALTGITISQALTAEDPRSTGNNMNILLIGLDSRK 60 Query 84 DQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADGKVVAFSIPRDDWVPFTGVPGY 143 DQEGNDLPWS+LK LHAGDSD GGYNTNTLILVHV ADGKVVAFSIPRDDWVPFTGVPGY Sbjct 61 DQEGNDLPWSILKHLHAGDSDQGGYNTNTLILVHVSADGKVVAFSIPRDDWVPFTGVPGY 120 Query 144 NHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRSLTGVPIDYFAE 203 NHIKIKEAYGLTKQYVA++L +QGV+ ++ELETRGREA RAATLRAVR+LTGVPIDYFAE Sbjct 121 NHIKIKEAYGLTKQYVAQELIDQGVTSQRELETRGREAGRAATLRAVRALTGVPIDYFAE 180 Query 204 INLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGLDNGDL 263 +NLAGFYDLAQ LGGV+VCLNHAV DSYSGADFPAGRQRL+AAQALAFVRQRHGLDNGDL Sbjct 181 VNLAGFYDLAQALGGVEVCLNHAVDDSYSGADFPAGRQRLDAAQALAFVRQRHGLDNGDL 240 Query 264 DRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLFRRMGDLAGG 323 DRTHRQQ FLSSVMR+LQDSGTFTNLDRLD+LMAVARKD+VLS GWDEDL RRMG+LAG Sbjct 241 DRTHRQQVFLSSVMRDLQDSGTFTNLDRLDSLMAVARKDLVLSGGWDEDLVRRMGELAGA 300 Query 324 NVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFGSAPPTSQTAAA-AKPNPSTVVDV 382 ++EFRTLPVVRYDNIDGQDVNI+DP AI+AEVAAA GS + AKP+PSTVVDV Sbjct 301 DIEFRTLPVVRYDNIDGQDVNIVDPAAIKAEVAAAIGSTSTAATATTTPAKPSPSTVVDV 360 Query 383 VNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYGAGAETDAQNVADLLGID 442 VNAGSISGLASQVS AL KRGYT QVRDR+SGDP T I+YG GA+ DA N+ LLGID Sbjct 361 VNAGSISGLASQVSNALRKRGYTTDQVRDRKSGDPAATTIKYGPGAQADAMNLGTLLGID 420 Query 443 APNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTETSTYP----LYGGG--TTTDPT 496 AP PD ++ PGHI+VTVDTNFS+PAPD+ + +T+ YP Y GG +++ P Sbjct 421 APKQPDASIEPGHIQVTVDTNFSMPAPDD-----SDDDTTVYPKPNAYYNGGDDSSSYPA 475 Query 497 PDQGAPIDGGGVPCVN 512 PD G PIDGGGVPCVN Sbjct 476 PDHGQPIDGGGVPCVN 491 >gi|41406677|ref|NP_959513.1| CpsA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395027|gb|AAS02896.1| CpsA [Mycobacterium avium subsp. paratuberculosis K-10] Length=520 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/520 (76%), Positives = 453/520 (88%), Gaps = 8/520 (1%) Query 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 MARS G RHRAV QPSR RK L+R + LVSV A+ +TGAGY+VAHGALGGIT+S AL Sbjct 1 MARSGGAHRRHRAVRQPSRFRKGLTRTLGALVSVAAIGLTGAGYYVAHGALGGITVSNAL 60 Query 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 P+DPRSSG+NMNILLIGLDSRKDQ+GNDLP+S+LK LHAGDSDDGGYNTNTLILVHV A Sbjct 61 QPDDPRSSGDNMNILLIGLDSRKDQDGNDLPYSILKHLHAGDSDDGGYNTNTLILVHVSA 120 Query 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 D KVVAFSIPRDDWVPF+GVPGYNHIKIKEAYGLTKQYVA++LANQG S +KELET+GRE Sbjct 121 DNKVVAFSIPRDDWVPFSGVPGYNHIKIKEAYGLTKQYVAQKLANQGTSSQKELETKGRE 180 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 A RAATLRAVR+LTGVPIDYFAE+NLAGFYDLAQTLGGV+VCLNH VYDSYSGADFPAGR Sbjct 181 AGRAATLRAVRNLTGVPIDYFAEVNLAGFYDLAQTLGGVEVCLNHPVYDSYSGADFPAGR 240 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 QRL+A++AL+FVRQRHGLDNGDLDRTHRQQAF+SSVM+ELQ +GTFTN+D+L NLMAVAR Sbjct 241 QRLDASEALSFVRQRHGLDNGDLDRTHRQQAFISSVMQELQAAGTFTNIDKLKNLMAVAR 300 Query 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 KDVVLSAGW +D+ +R+G LAGGN+EFRTLPVVRYDNIDGQDVNI+DP AI+AEVAAA G Sbjct 301 KDVVLSAGWTDDMIQRLGGLAGGNIEFRTLPVVRYDNIDGQDVNIVDPAAIKAEVAAAIG 360 Query 361 SAPPTSQ-TAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFT 419 + PTS T+ + P+PSTVVDVVN+GS+SGLAS+VS AL KRGYT GQVRDRESGDP Sbjct 361 ANAPTSAPTSTSVAPDPSTVVDVVNSGSMSGLASEVSHALKKRGYTTGQVRDRESGDPAA 420 Query 420 TAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLP-------APDEA 472 T IEYGAGA+ DA+N+A+LL +DAPN P P++APGHIR+TVDTNF++P + Sbjct 421 TTIEYGAGAQNDARNLANLLSLDAPNQPSPSIAPGHIRLTVDTNFTMPTTDDTQLDDTTS 480 Query 473 TAAATSTETSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 T++ T++ + Y G TTT PTPDQG PIDGGGVPCVN Sbjct 481 TSSTTTSSKAKTYYYNGTTTTYPTPDQGKPIDGGGVPCVN 520 >gi|336458385|gb|EGO37361.1| cell envelope-related function transcriptional attenuator [Mycobacterium avium subsp. paratuberculosis S397] Length=520 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/520 (76%), Positives = 452/520 (87%), Gaps = 8/520 (1%) Query 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 M RS G RHRAV QPSR RK L+R + LVSV A+ +TGAGY+VAHGALGGIT+S AL Sbjct 1 MVRSGGAHRRHRAVRQPSRFRKGLTRTLGALVSVAAIGLTGAGYYVAHGALGGITVSNAL 60 Query 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 P+DPRSSG+NMNILLIGLDSRKDQ+GNDLP+S+LK LHAGDSDDGGYNTNTLILVHV A Sbjct 61 QPDDPRSSGDNMNILLIGLDSRKDQDGNDLPYSILKHLHAGDSDDGGYNTNTLILVHVSA 120 Query 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 D KVVAFSIPRDDWVPF+GVPGYNHIKIKEAYGLTKQYVA++LANQG S +KELET+GRE Sbjct 121 DNKVVAFSIPRDDWVPFSGVPGYNHIKIKEAYGLTKQYVAQKLANQGTSSQKELETKGRE 180 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 A RAATLRAVR+LTGVPIDYFAE+NLAGFYDLAQTLGGV+VCLNH VYDSYSGADFPAGR Sbjct 181 AGRAATLRAVRNLTGVPIDYFAEVNLAGFYDLAQTLGGVEVCLNHPVYDSYSGADFPAGR 240 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 QRL+A++AL+FVRQRHGLDNGDLDRTHRQQAF+SSVM+ELQ +GTFTN+D+L NLMAVAR Sbjct 241 QRLDASEALSFVRQRHGLDNGDLDRTHRQQAFISSVMQELQAAGTFTNIDKLKNLMAVAR 300 Query 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 KDVVLSAGW +D+ +R+G LAGGN+EFRTLPVVRYDNIDGQDVNI+DP AI+AEVAAA G Sbjct 301 KDVVLSAGWTDDMIQRLGGLAGGNIEFRTLPVVRYDNIDGQDVNIVDPAAIKAEVAAAIG 360 Query 361 SAPPTSQ-TAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFT 419 + PTS T+ + P+PSTVVDVVN+GS+SGLAS+VS AL KRGYT GQVRDRESGDP Sbjct 361 ADAPTSAPTSTSVAPDPSTVVDVVNSGSMSGLASEVSHALKKRGYTTGQVRDRESGDPAA 420 Query 420 TAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLP-------APDEA 472 T IEYGAGA+ DA+N+A+LL +DAPN P P++APGHIR+TVDTNF++P + Sbjct 421 TTIEYGAGAQNDARNLANLLSLDAPNQPSPSIAPGHIRLTVDTNFTMPTTDDTQLDDTTS 480 Query 473 TAAATSTETSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 T++ T++ + Y G TTT PTPDQG PIDGGGVPCVN Sbjct 481 TSSTTTSSKAKTYYYNGTTTTYPTPDQGKPIDGGGVPCVN 520 >gi|254821771|ref|ZP_05226772.1| CpsA [Mycobacterium intracellulare ATCC 13950] Length=519 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/519 (77%), Positives = 456/519 (88%), Gaps = 7/519 (1%) Query 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 MARS G RHRAV QPSR RK L+R + LVSV A+ +TGAGY+VAHGALGGIT+S AL Sbjct 1 MARSGGAHRRHRAVRQPSRFRKGLTRTLGALVSVAAVGLTGAGYYVAHGALGGITVSNAL 60 Query 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 P+DPRSSG+NMNILLIGLDSRKDQ+GNDLP+S+LK LHAGDSDDGGYNTNTLILVHV A Sbjct 61 QPDDPRSSGDNMNILLIGLDSRKDQDGNDLPYSILKHLHAGDSDDGGYNTNTLILVHVSA 120 Query 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 D KVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVA++LANQG S +KELET+GRE Sbjct 121 DNKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAQKLANQGTSSQKELETKGRE 180 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 A RAATLRAVRSLTGVPIDYFAE+NLAGFYDLAQTLGGV+VCLNHAVYDSYSGADFPAGR Sbjct 181 AGRAATLRAVRSLTGVPIDYFAEVNLAGFYDLAQTLGGVEVCLNHAVYDSYSGADFPAGR 240 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 QRL+A++AL+FVRQRHGL+NGDLDRTHRQQAF+SSVM+ELQ +GTFTN+D+L NLMAVAR Sbjct 241 QRLDASEALSFVRQRHGLENGDLDRTHRQQAFISSVMQELQAAGTFTNIDKLKNLMAVAR 300 Query 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 KDVVLS+GW++D+ +R+G LAGGN+EFRTLPVVRYDNIDGQDVNI+DP AI+AEVAAA G Sbjct 301 KDVVLSSGWNDDMIQRLGGLAGGNLEFRTLPVVRYDNIDGQDVNIVDPAAIKAEVAAAIG 360 Query 361 -SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFT 419 AP T+ T A KP+PSTVVDVVN+GS+SGLA++VS AL K+GYT GQVRDRESG+P T Sbjct 361 TDAPTTAPTTTAVKPDPSTVVDVVNSGSMSGLATEVSRALKKKGYTPGQVRDRESGEPTT 420 Query 420 TAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEA------T 473 ++I YGAGA+TDA+N+A +LG+DAP+ P P V PGHIRVTVDTNFS+P PDE + Sbjct 421 SSIAYGAGAQTDARNLATMLGLDAPSQPSPGVQPGHIRVTVDTNFSIPTPDETQMDDVTS 480 Query 474 AAATSTETSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 + T++ + Y G TTT PTPDQG PIDGGGVPCVN Sbjct 481 TSTTTSTKAKTYYYNGTTTTYPTPDQGKPIDGGGVPCVN 519 >gi|254773629|ref|ZP_05215145.1| CpsA [Mycobacterium avium subsp. avium ATCC 25291] Length=520 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/520 (76%), Positives = 452/520 (87%), Gaps = 8/520 (1%) Query 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 MARS G RHRAV QPSR RK L+R + LVSV A+ +TGAGY+VAHGALGGIT+S AL Sbjct 1 MARSGGAHRRHRAVRQPSRFRKGLTRTLGALVSVAAIGLTGAGYYVAHGALGGITVSNAL 60 Query 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 P+DPRSSG+NMNILLIGLDSRKDQ+GNDLP+S+LK LHAGDSDDGGYNTNTLILVHV A Sbjct 61 QPDDPRSSGDNMNILLIGLDSRKDQDGNDLPYSILKHLHAGDSDDGGYNTNTLILVHVSA 120 Query 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 D KVVAFSIPRDDWVPF+GVPGYNHIKIKEAYGLTKQYVA++LANQG S +KELET+GRE Sbjct 121 DNKVVAFSIPRDDWVPFSGVPGYNHIKIKEAYGLTKQYVAQKLANQGTSSQKELETKGRE 180 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 A RAATLRAVR+LTGVPIDYFAE+NLAGFYDLAQTLGGV+VCLNH VYDSYSGADFPAGR Sbjct 181 AGRAATLRAVRNLTGVPIDYFAEVNLAGFYDLAQTLGGVEVCLNHPVYDSYSGADFPAGR 240 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 QRL+A++AL+FVRQRHGLDNGDLDRTHRQQAF+SSVM+ELQ +GTFTN+D+L NLMAVAR Sbjct 241 QRLDASEALSFVRQRHGLDNGDLDRTHRQQAFISSVMQELQAAGTFTNIDKLKNLMAVAR 300 Query 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 KDVVLSAGW +D+ +R+G LAGGN+EFRTLPVVRYDNIDGQDVNI+DP AI+AEVAAA G Sbjct 301 KDVVLSAGWTDDMIQRLGGLAGGNIEFRTLPVVRYDNIDGQDVNIVDPAAIKAEVAAAIG 360 Query 361 SAPPTSQ-TAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFT 419 + PTS T+ + P+PSTVVDVVN+GS+SGLAS+VS AL KRGYT GQVRDRESGDP Sbjct 361 ADAPTSAPTSTSVAPDPSTVVDVVNSGSMSGLASEVSHALKKRGYTTGQVRDRESGDPAA 420 Query 420 TAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLP-------APDEA 472 T IEYGAGA+ DA+N+A+LL +DAPN P P++APGHIR+TVDTNF++P + Sbjct 421 TTIEYGAGAQNDARNLANLLSLDAPNQPSPSIAPGHIRLTVDTNFTMPTTDDTQLDDTTS 480 Query 473 TAAATSTETSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 T++ T++ + Y G TTT PTPDQG PIDGG VPCVN Sbjct 481 TSSTTTSSKAKTYYYNGTTTTYPTPDQGKPIDGGSVPCVN 520 >gi|296166516|ref|ZP_06848947.1| CpsA protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898128|gb|EFG77703.1| CpsA protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=519 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/518 (76%), Positives = 441/518 (86%), Gaps = 6/518 (1%) Query 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 MARS G RHRAV QPSR R+ L+R + LVSV A+ +TGAGY+VAHGALGGIT+S AL Sbjct 2 MARSGGAHRRHRAVRQPSRFRRGLTRTLGALVSVAAVGLTGAGYYVAHGALGGITVSNAL 61 Query 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 P+DPRSSG+NMNILLIGLDSRKDQ+GNDLPWS+LK LHAGDSDDGGYNTNTLILVHV A Sbjct 62 QPDDPRSSGDNMNILLIGLDSRKDQDGNDLPWSILKHLHAGDSDDGGYNTNTLILVHVSA 121 Query 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 D KVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVA +LANQG S +KELET+GRE Sbjct 122 DNKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVANKLANQGASSQKELETKGRE 181 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 A RAATLRAVR+LTGVPIDYFAE+NLAGFYDL QTLGGV+VCLNH VYDSYSGADFPAGR Sbjct 182 AGRAATLRAVRNLTGVPIDYFAEVNLAGFYDLTQTLGGVEVCLNHPVYDSYSGADFPAGR 241 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 Q L+A+QALAFVRQRHGL+NGDLDRTHRQQAF+SSVM+ELQ +GTFTNLD+L +LMAVAR Sbjct 242 QTLDASQALAFVRQRHGLENGDLDRTHRQQAFISSVMQELQAAGTFTNLDKLKSLMAVAR 301 Query 301 KDVVLSAGWDEDLFRRMGDLA-GGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAF 359 KDVVLSAGWDE++ +R+G LA GNVEFRTLPVVRYDNIDGQDVNIIDP AI+AEVAAA Sbjct 302 KDVVLSAGWDEEMIQRLGSLASSGNVEFRTLPVVRYDNIDGQDVNIIDPAAIKAEVAAAI 361 Query 360 G-SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPF 418 G + P T+ AAKP+PSTVVDV+NAG SGLA++VS AL GYT GQ RDR+SG+P Sbjct 362 GATPPTTTPATTAAKPSPSTVVDVINAGDTSGLATEVSRALQNHGYTTGQTRDRKSGEPT 421 Query 419 TTAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLP----APDEATA 474 + + YG GA+TDA NVA LLG+DAP+ PDP+V PGHIRVTVDTNFS+ + T+ Sbjct 422 ASTVAYGVGAQTDAGNVAKLLGLDAPSRPDPSVQPGHIRVTVDTNFSVSIVDDGTTDDTS 481 Query 475 AATSTETSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 T++ + Y G TTT PTPDQG PIDGGGVPCVN Sbjct 482 TTTTSSKAKTYYYNGTTTTYPTPDQGKPIDGGGVPCVN 519 >gi|289759644|ref|ZP_06519022.1| hypothetical protein TBEG_03125 [Mycobacterium tuberculosis T85] gi|289715208|gb|EFD79220.1| hypothetical protein TBEG_03125 [Mycobacterium tuberculosis T85] Length=400 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/363 (100%), Positives = 363/363 (100%), Gaps = 0/363 (0%) Query 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL Sbjct 1 MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL 60 Query 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA Sbjct 61 TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA 120 Query 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE Sbjct 121 DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR Sbjct 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR Sbjct 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 Query 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG Sbjct 301 KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 Query 361 SAP 363 SAP Sbjct 361 SAP 363 >gi|169627663|ref|YP_001701312.1| hypothetical protein MAB_0560 [Mycobacterium abscessus ATCC 19977] gi|169239630|emb|CAM60658.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=514 Score = 551 bits (1421), Expect = 8e-155, Method: Compositional matrix adjust. Identities = 298/519 (58%), Positives = 370/519 (72%), Gaps = 12/519 (2%) Query 1 MARSEGNRPRHRAVPQPSR----IRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITI 56 M+R G R A+P+ ++ + +R + L++ +L++TGAG+ V + A + Sbjct 1 MSRDTGRRRPKHALPKSNKRWSVSKTAAARTIFALLACGSLVVTGAGWQVFYKAFSHVPT 60 Query 57 SQALTPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILV 116 S A E +SS +MN+LLIGLDSRKDQ+GNDLP +VL QLHAGDSD GGYNTNTLILV Sbjct 61 SGA-EAEGGKSSDGSMNMLLIGLDSRKDQDGNDLPRAVLNQLHAGDSDAGGYNTNTLILV 119 Query 117 HVGADGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELET 176 HVGAD KV AFSIPRDDWVP G+PGY HIKIKEAYGLTK A++L N+G++D+ LE Sbjct 120 HVGADNKVTAFSIPRDDWVPAEGIPGYKHIKIKEAYGLTKANEADKLVNEGITDQATLEQ 179 Query 177 RGREAARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADF 236 + REA R ATL AV LTG PIDYFAE+NL GFYDLA LGG+ VCLN+AVYDSYSGA+F Sbjct 180 QSREAGRRATLNAVHRLTGQPIDYFAEVNLVGFYDLASELGGITVCLNNAVYDSYSGANF 239 Query 237 PAGRQRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLM 296 PAG Q LNA+QALAFVRQRHGL+NGDLDRTHRQQAFL SVM++L+++GT T++ +L+ LM Sbjct 240 PAGEQTLNASQALAFVRQRHGLENGDLDRTHRQQAFLISVMQQLRNAGTLTDITKLNGLM 299 Query 297 AVARKDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVA 356 V KDVVLS GW E F+R+G +A GNV F+TLPVVRYDNI+G DVNI+DP AIRA+VA Sbjct 300 NVVHKDVVLSKGWTEKQFQRLGQIADGNVNFQTLPVVRYDNINGADVNIVDPVAIRAKVA 359 Query 357 AAFGSAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGD 416 AAF +AA ++ VDVVNA S SGLAS VS AL+ RGYT G VRD SG+ Sbjct 360 AAFKGEDAAPASAATTP---TSTVDVVNATSTSGLASTVSSALVSRGYTKGDVRDPLSGE 416 Query 417 PFTTAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAA 476 TAI+YG GA+ DA+ ++ +LGI+ DP +APG IRV + T +S P+ D +A Sbjct 417 STGTAIDYGVGADADAKAMSTMLGIETEPVADPTLAPGRIRVMLGTGYSAPS-DVLSAED 475 Query 477 TSTETSTYPLYGGGTTTD-PTPDQGAPI--DGGGVPCVN 512 + T +S G + D PD G P+ GVPCVN Sbjct 476 SGTASSMSSSSSSGASGDYAPPDSGKPVVSSNSGVPCVN 514 >gi|296139021|ref|YP_003646264.1| cell envelope-related transcriptional attenuator [Tsukamurella paurometabola DSM 20162] gi|296027155|gb|ADG77925.1| cell envelope-related transcriptional attenuator [Tsukamurella paurometabola DSM 20162] Length=414 Score = 420 bits (1080), Expect = 3e-115, Method: Compositional matrix adjust. Identities = 212/345 (62%), Positives = 265/345 (77%), Gaps = 3/345 (0%) Query 23 RLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPED-PRSSGNNMNILLIGLDS 81 R R + L+S+V L +TG +W + +GG +S AL +S+G + NILL+GLD+ Sbjct 9 RGGRVAIALLSMVVLAVTGTLWWSTNLVIGGFNLSGALAEAKVAQSTGGDRNILLMGLDT 68 Query 82 RKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADGK-VVAFSIPRDDWVPFTGV 140 RKDQ+GNDLP VLKQLHAGDS +GGYNTNTLIL+HV ADGK VVAFSIPRDD+V GV Sbjct 69 RKDQDGNDLPDDVLKQLHAGDSSNGGYNTNTLILMHVPADGKKVVAFSIPRDDYVTLVGV 128 Query 141 PGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRSLTGVPIDY 200 + KIKEAYGL K V +QLA QGV+DRKELE + RE+ARAATL V L GVPID+ Sbjct 129 KSRSKGKIKEAYGLRKAEVQDQLAAQGVTDRKELEAKSRESARAATLATVERLVGVPIDH 188 Query 201 FAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGLDN 260 FAE++L GFYDLA+TLGGV+VCLN V DSYSGA FPAGRQ+LNAAQ+L+FVRQRHGL + Sbjct 189 FAEVSLVGFYDLAKTLGGVEVCLNKPVRDSYSGAAFPAGRQKLNAAQSLSFVRQRHGLAD 248 Query 261 GDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLF-RRMGD 319 GDLDRTHRQQAF++ VM +LQ+ G F ++ +L +L++VA+KDVV+S+GWD + F ++ G Sbjct 249 GDLDRTHRQQAFIAGVMMQLQNQGVFGDVRKLQSLISVAQKDVVISSGWDLEQFAKQAGK 308 Query 320 LAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFGSAPP 364 +AG + F TLPV+ YD ID Q VNI+DP AIRA+V AFG + P Sbjct 309 IAGTALTFTTLPVLGYDTIDEQAVNIVDPKAIRAQVQKAFGQSVP 353 >gi|317506895|ref|ZP_07964667.1| hypothetical protein HMPREF9336_01038 [Segniliparus rugosus ATCC BAA-974] gi|316254823|gb|EFV14121.1| hypothetical protein HMPREF9336_01038 [Segniliparus rugosus ATCC BAA-974] Length=427 Score = 390 bits (1001), Expect = 4e-106, Method: Compositional matrix adjust. Identities = 206/356 (58%), Positives = 251/356 (71%), Gaps = 13/356 (3%) Query 9 PRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWV--AHGALGGITISQALTPEDPR 66 PR A + S RK R S +AL +TGAG+ + GGIT P+ Sbjct 30 PRRHAARRNSS-RKGALRATAVFASALALTLTGAGFKLLPEFPTGGGIT--------GPK 80 Query 67 SSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADG-KVV 125 SS ++N+LLIGLDSRKDQ+GNDLP+S+L +LHAGD +GGYNTNTLILVH+ A G K V Sbjct 81 SSDGSINVLLIGLDSRKDQDGNDLPYSMLSKLHAGDGQEGGYNTNTLILVHIPAGGGKAV 140 Query 126 AFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAA 185 AFSIPRDD+V G+ GY+ IKIKEAYGL K +L +GVSDRK +E GREA R Sbjct 141 AFSIPRDDYVAVRGIKGYSKIKIKEAYGLKKFEKENELVAKGVSDRKRIEREGREAGRQE 200 Query 186 TLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNA 245 TL+ V L GVPID +AE+NL GFYD+A+ LGG++VCLN AV D YSGA+FPAGRQ L+A Sbjct 201 TLQTVHDLLGVPIDQYAEVNLVGFYDVAKALGGIEVCLNQAVSDDYSGANFPAGRQTLDA 260 Query 246 AQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVL 305 +QALAFVRQRHGLDNGDLDRTHRQQAFL++V +L +GT +NL L +L++ +KDVVL Sbjct 261 SQALAFVRQRHGLDNGDLDRTHRQQAFLAAVEHKLSSAGTLSNLSELRSLVSAVQKDVVL 320 Query 306 SAGWDEDLF-RRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG 360 S WD F +++ GG VEFRTLPV RYD I+ Q VNIIDP + EV AFG Sbjct 321 SPNWDVVSFIQQIQRSTGGEVEFRTLPVERYDMINEQSVNIIDPKKVADEVQQAFG 376 >gi|296393723|ref|YP_003658607.1| cell envelope-related transcriptional attenuator [Segniliparus rotundus DSM 44985] gi|296180870|gb|ADG97776.1| cell envelope-related transcriptional attenuator [Segniliparus rotundus DSM 44985] Length=450 Score = 377 bits (968), Expect = 3e-102, Method: Compositional matrix adjust. Identities = 188/301 (63%), Positives = 229/301 (77%), Gaps = 2/301 (0%) Query 62 PEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGAD 121 P P+S + NILLIGLDSRKDQ+G DLP S+L++LHAGD D+GGYNTNTLIL+H+ A Sbjct 101 PLGPKSVDGSTNILLIGLDSRKDQDGKDLPSSLLEKLHAGDGDEGGYNTNTLILIHIPAG 160 Query 122 -GKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE 180 GK VAFSIPRDD+V G+ GY+ IKIKEAYGL K V +L ++G SDRK +E GRE Sbjct 161 RGKAVAFSIPRDDYVTVRGIKGYSKIKIKEAYGLKKFEVENELVDKGESDRKTIEREGRE 220 Query 181 AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR 240 A R T+R VR L GVPID +AE+NL GFYD+A+ LGG++VCLNHAVYD YSGA+F G Sbjct 221 AGRQETIRTVRELLGVPIDQYAEVNLVGFYDVAKALGGIEVCLNHAVYDDYSGANFRKGL 280 Query 241 QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR 300 Q L+A+ ALAFVRQRHGLDNGDLDRTHRQQAFL+SV +L SG ++L RL +L++V + Sbjct 281 QTLDASDALAFVRQRHGLDNGDLDRTHRQQAFLASVQHKLNSSGALSDLGRLRSLVSVVQ 340 Query 301 KDVVLSAGWDEDLF-RRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAF 359 KDVVLS WD F +++ GG VEFRTLPV Y+ +D QDVNII+P + AEV AF Sbjct 341 KDVVLSPNWDVVSFIQKVQQNTGGEVEFRTLPVEGYETVDDQDVNIINPKKVAAEVQQAF 400 Query 360 G 360 G Sbjct 401 G 401 >gi|337769622|emb|CCB78335.1| putative LytR family regulatory protein [Streptomyces cattleya NRRL 8057] Length=524 Score = 345 bits (886), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 210/435 (49%), Positives = 266/435 (62%), Gaps = 19/435 (4%) Query 45 WVA-HGALGGITISQALT---PEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLK-QLH 99 W A H G+ S AL PR N++N+LLIGLDSRKD +GNDLP ++ QLH Sbjct 55 WTAYHWVTSGLNTSDALDAIGKGAPRHLDNSVNLLLIGLDSRKDMDGNDLPREFVQSQLH 114 Query 100 AGDSDDGGYNTNTLILVHVGADG-KVVAFSIPRDDWVPFTGVPGYNH--IKIKEAYGLTK 156 AG S+ G YNTNTLIL+H+ A G +V AFSIPRDD+V G + KIKEAY Sbjct 115 AGSSEIGYYNTNTLILMHIPAGGGRVTAFSIPRDDYVETLDGDGTSQGEHKIKEAYANAY 174 Query 157 QYVAEQLANQGVSDRKELETRGREAARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTL 216 ++L+ QGV+ +LE R REA R ATL V+ L GVPID+FAE+NL GFYD+A+ L Sbjct 175 TVRHDKLSAQGVTG-PDLEHRSREAGREATLATVQHLLGVPIDHFAEVNLLGFYDIAKVL 233 Query 217 GGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSV 276 + VCL HAV+D+YSGADFPAG Q L+ QALAFVRQRHGLD GDLDRT RQQAFLSSV Sbjct 234 QPIRVCLKHAVHDTYSGADFPAGPQDLDPRQALAFVRQRHGLDGGDLDRTRRQQAFLSSV 293 Query 277 MRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDE-DLFRRMGDLAGGNVEFRTLPVVRY 335 ++L+ G F +L +L L V +KD+V+ G+D D ++ +L GGNVEF TLP+ + Sbjct 294 TQKLKTEGVFGDLGKLQGLFGVVQKDLVIDHGFDVLDFAQQATNLTGGNVEFHTLPITGF 353 Query 336 DNIDGQDVNIIDPTAIRAEVAAAFG------SAPPTSQTAAAAKPNPSTVVDVVNAGSIS 389 G+DVN++DP IR V A G + P T + A+P VDV N S + Sbjct 354 AMRKGEDVNLVDPARIREIVQAMIGHDPAGAATPGTPAASTPAQPPAPATVDVANGSSRT 413 Query 390 GLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYGAGAETDAQNVADLLGIDAPNHPDP 449 G A+ AL GYT G + + T + YG GA T A +A L A PDP Sbjct 414 GAAAAELKALGALGYTPGTYSNAPAQS--ATTVTYGTGAATAAGQIAGRLHT-AAARPDP 470 Query 450 AVAPGHIRVTVDTNF 464 AV GH+RV + +F Sbjct 471 AVPAGHVRVVLGADF 485 >gi|229489836|ref|ZP_04383693.1| transcriptional regulator, LytR family [Rhodococcus erythropolis SK121] gi|229323346|gb|EEN89110.1| transcriptional regulator, LytR family [Rhodococcus erythropolis SK121] Length=526 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 221/524 (43%), Positives = 300/524 (58%), Gaps = 37/524 (7%) Query 8 RPRHRAVPQPSRIRKRLS------RGVMTLVSVVALLMTGAGYWVAHGALGGITISQALT 61 RPRH A R + + S + +S L+ G G++V G+ S AL+ Sbjct 21 RPRHSATRHRRRRQPQRSTLSVGRKLAAASLSTTILVGVGIGWYVQSDLTSGLYRSDALS 80 Query 62 P--EDPRSS-GNNMNILLIGLDSRKDQEGNDLPWS-VLKQLHAGDSDDGGYNTNTLILVH 117 ED SS + NILLIGLDSRK +G+DLP V +LHAGDSD GGYNTNTLIL+H Sbjct 81 ALGEDAGSSLDGDTNILLIGLDSRKAMDGSDLPAEFVTDKLHAGDSDVGGYNTNTLILLH 140 Query 118 VGADG-KVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELET 176 V DG K A +IPRDD+V VPGY KIKEAYG+ K +L GV+D E Sbjct 141 VPGDGGKASAVAIPRDDYV---AVPGYGMAKIKEAYGMAKADADAKLIADGVTDPAAREQ 197 Query 177 RGREAARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADF 236 + RE R +TL V++L VPID+FAE+NL GFYD+ +G V VCLN+ V D +SGA+F Sbjct 198 QAREVGRRSTLTTVQNLLKVPIDHFAEVNLMGFYDVVSAIGPVQVCLNNPVQDDFSGANF 257 Query 237 PAGRQRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLM 296 PAG Q L+A+QAL+FVRQRHGLDNGDLDRTHRQQAF+S+V+ L+ SG N+ ++ L Sbjct 258 PAGVQTLDASQALSFVRQRHGLDNGDLDRTHRQQAFISAVIANLKGSGVIGNIPKMTALA 317 Query 297 AVARKDVVLSAGWDEDLFRRMGD-LAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEV 355 V +KDVV+ + D F LAGGN++F TLP+ Y+ +DGQDVN++DP +R+EV Sbjct 318 DVVKKDVVIDSAMDPVRFASQASALAGGNIDFYTLPIEGYETVDGQDVNMVDPARLRSEV 377 Query 356 AAAFG----SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRD 411 + F ++ P TA + + VVD+ N + GL + ++ G G+V Sbjct 378 SRIFAGGDSASAPVMDTAVSTG---NEVVDIRNGTATDGLGAALAAVTKASGVEVGEV-- 432 Query 412 RESGDPFTTAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDE 471 + + + YG GA+ A+ +A+ LG+ A P+ A + V L D Sbjct 433 STAAATAKSVVSYGVGAKAVAEALAEQLGVAAV--PNEQAAAESVSV-------LIGEDN 483 Query 472 ATAAATSTETSTYPLYGGGTTTDPTPDQGAPIDG---GGVPCVN 512 A ++ + GT D T QG+PI GG+PCV+ Sbjct 484 AQTVFSAAPARSDSSVSAGTVPD-TGAQGSPIRADANGGIPCVD 526 >gi|226304103|ref|YP_002764061.1| LytR family regulatory protein [Rhodococcus erythropolis PR4] gi|226183218|dbj|BAH31322.1| putative LytR family regulatory protein [Rhodococcus erythropolis PR4] Length=509 Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 222/521 (43%), Positives = 299/521 (58%), Gaps = 31/521 (5%) Query 8 RPRHRAVPQPSRIRKRLS------RGVMTLVSVVALLMTGAGYWVAHGALGGITISQALT 61 RPRH A R + + S + +S L+ G G++V G+ S AL+ Sbjct 4 RPRHSATRHRRRRQPQRSTLSVGRKLAAASLSTTILVGVGIGWYVQSDLTSGLYRSDALS 63 Query 62 P--EDPRSS-GNNMNILLIGLDSRKDQEGNDLPWS-VLKQLHAGDSDDGGYNTNTLILVH 117 ED SS + NILLIGLDSRK +G+DLP V +LHAGDSD GGYNTNTLIL+H Sbjct 64 ALGEDAGSSLDGDTNILLIGLDSRKAMDGSDLPAEFVTDKLHAGDSDVGGYNTNTLILLH 123 Query 118 VGADG-KVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELET 176 V DG K A +IPRDD+V VPGY KIKEAYG+ K +L GV+D E Sbjct 124 VPGDGGKASAVAIPRDDYV---SVPGYGMAKIKEAYGMAKADADAKLVADGVTDPAAREQ 180 Query 177 RGREAARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADF 236 + RE R +TL V++L VPID+FAE+NL GFYD+ +G V VCLN+ V D +SGA+F Sbjct 181 QAREVGRRSTLTTVQNLLKVPIDHFAEVNLMGFYDVVSAIGPVQVCLNNPVQDDFSGANF 240 Query 237 PAGRQRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLM 296 PAG Q L+A+QAL+FVRQRHGLDNGDLDRTHRQQAF+S+V+ L+ SG N+ ++ L Sbjct 241 PAGVQTLDASQALSFVRQRHGLDNGDLDRTHRQQAFISAVIANLKGSGVIGNIPKMTALA 300 Query 297 AVARKDVVLSAGWDEDLFRRMGD-LAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEV 355 V +KDVV+ + D F LAGGN++F TLP+ Y+ +DGQDVN++DP +R+EV Sbjct 301 DVVKKDVVIDSAMDPVRFASQASALAGGNIDFYTLPIEGYETVDGQDVNMVDPARLRSEV 360 Query 356 AAAFGSAPPTSQTAA-AAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRES 414 + F S A A + VVD+ N + GL + ++ A+ G G+V + Sbjct 361 SRIFAGGDSASAPAMDTAISTGNEVVDIRNGTATDGLGAALAAAMKASGVEVGEV--STA 418 Query 415 GDPFTTAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATA 474 + + YG GA+ A+ +A+ LG+ A P+ A + V L D A Sbjct 419 AATAKSVVSYGVGAKAVAEALAEQLGVAAV--PNEQAAAESVSV-------LIGEDNAQT 469 Query 475 AATSTETSTYPLYGGGTTTDPTPDQGAPIDG---GGVPCVN 512 ++ + GT D T QG+PI GG+PCV+ Sbjct 470 VFSAAPAQSDSSVSAGTVPD-TGAQGSPIRADANGGIPCVD 509 >gi|311893633|dbj|BAJ26041.1| putative lytR family regulatory protein [Kitasatospora setae KM-6054] Length=529 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 211/539 (40%), Positives = 295/539 (55%), Gaps = 71/539 (13%) Query 30 TLVSVVALLMTG-AGY-WVAHGALGGITISQAL---TPEDPRSSGNNMNILLIGLDSRKD 84 TL ++L + G +G+ W L G+ S AL P+ +++NILLIGLDSRK+ Sbjct 6 TLACGLSLAVLGISGFAWYTTKELDGVNRSHALDQARKNAPQHLDSSVNILLIGLDSRKN 65 Query 85 QEGNDLPWSVLK-QLHAGDSDDGGYNTNTLILVHVGADGKVVAFSIPRDDWVPF---TGV 140 +G DLP ++ +LHAG S+ GGYNTN+LI++H+ GK A S+PRDDWV G Sbjct 66 MDGTDLPKQFVEDELHAGSSEIGGYNTNSLIVLHIPPSGKAQAVSVPRDDWVQTYNADGT 125 Query 141 PGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRSLTGVPIDY 200 G H K+KEAYG K+ ++L +G+ ELE + REA R+AT++ V+ L +PID+ Sbjct 126 EGRMH-KVKEAYGYAKEAAEQKLRAKGLGG-AELEQQSREAGRSATIQTVQKLLDIPIDH 183 Query 201 FAEINLAGFYDLAQTLGGVDVCLNHAVYDSY-----------------SGADFPAGRQRL 243 FAE+NL GFYD+A+ L + VCLN AV D +G PAG +L Sbjct 184 FAEVNLIGFYDIAKALEPIPVCLNKAVDDPIVSRITDSKGNVIRPGGGTGLQLPAGVSQL 243 Query 244 NAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDV 303 NAA AL+FVRQRH L NGDLDRTHRQQAF++SV +L+ G F +L R+ L+ V +KDV Sbjct 244 NAADALSFVRQRHNLTNGDLDRTHRQQAFIASVEYKLKQQGVFGDLGRMQALLDVVKKDV 303 Query 304 VLSAGWD-EDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFGS- 361 V+ W D ++ +L GGNVEF TLP+ ++ I GQ+VN +DP +R V FG Sbjct 304 VIDDRWRLLDFVQQAPNLTGGNVEFNTLPIDKFATIGGQEVNQVDPVKLRRIVKQLFGQP 363 Query 362 ---------------------------APPTSQTAAAAKPNPSTVVDVVNAGSISGLASQ 394 P VDV+N +SG A++ Sbjct 364 VDADPAVPVASPSSSSSPSPGSSSSASPSSGPGAGTGEAPVAEATVDVLNGSPVSGAAAE 423 Query 395 VSGALLKRGYTAGQVRDRESGDPFTTAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPG 454 S AL+ G+ AG++ ++ P TT ++YGAGA+ + +AD G+ A A+APG Sbjct 424 ESKALVALGHRAGRIGTADT-RPRTTTVKYGAGAQDAGRQIADHYGVTAT--ASSALAPG 480 Query 455 HIRVTVDTNFSLPAPDEATAAATSTETSTYPLYGGGTTTDPTPD-QGAPIDGGGVPCVN 512 H++V + + + PD T T+ E S P TP QG P+ GGVPCV+ Sbjct 481 HVQVVLGADRA--TPDAGTGTGTTGEPSPGP--------SATPQMQGPPVRAGGVPCVD 529 >gi|254383119|ref|ZP_04998473.1| CpsA [Streptomyces sp. Mg1] gi|194342018|gb|EDX22984.1| CpsA [Streptomyces sp. Mg1] Length=402 Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 177/362 (49%), Positives = 225/362 (63%), Gaps = 20/362 (5%) Query 21 RKRLSRGV---MTLVSVVALLMTGAGYWVAHGALGG-ITISQALTPEDPRSSGNNMNILL 76 R+ SRG+ + + + G W A+ L G I S+AL + +S + NILL Sbjct 10 RRHPSRGLGRKLLITGCAVTAIAGGTAWYAYQDLAGSIGSSKALEGAE-KSKFGDTNILL 68 Query 77 IGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADG-KVVAFSIPRDDWV 135 +GLDSR+DQ G LP VL +LHAG SD GGYN NTLIL+HV DG + AFS+PRDD Sbjct 69 MGLDSRRDQNGEKLPEEVLDKLHAGSSDIGGYNANTLILLHVPGDGGRPTAFSVPRDD-- 126 Query 136 PFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRSLTG 195 F +PG+ K+K+AYGL K + L QGV D++ELE GREA R A L VR+ G Sbjct 127 -FVAIPGHGKDKVKKAYGLAKAAREDALTAQGVKDQRELEREGREAGRKAQLETVRNFLG 185 Query 196 VPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQR 255 VP+D+FAE+NLAGFY LA L GV VCL V D YSGADFPAGRQ LN Q+LAFVRQR Sbjct 186 VPVDHFAELNLAGFYHLADALKGVPVCLKKPVKDKYSGADFPAGRQNLNGQQSLAFVRQR 245 Query 256 HGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLF- 314 HGL+ GDLDRT RQQAFL+ +L GTFT+ +L L+ A++DVV AGWD F Sbjct 246 HGLEAGDLDRTKRQQAFLAGATHKLNSVGTFTDPTKLMKLIDSAKEDVVTDAGWDLLSFV 305 Query 315 RRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG----------SAPP 364 ++ +L+GG F TLP+ R+ G+D+N++D I+ +A G S PP Sbjct 306 KQAKNLSGGKTRFVTLPIERFGRNHGEDINVVDDMKIKRLIAEQIGPKASEGPGGPSTPP 365 Query 365 TS 366 S Sbjct 366 AS 367 >gi|326384579|ref|ZP_08206258.1| hypothetical protein SCNU_16643 [Gordonia neofelifaecis NRRL B-59395] gi|326196713|gb|EGD53908.1| hypothetical protein SCNU_16643 [Gordonia neofelifaecis NRRL B-59395] Length=298 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 162/260 (63%), Positives = 195/260 (75%), Gaps = 10/260 (3%) Query 125 VAFSIPRDDWVPFTG--VPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAA 182 +AFSIPRDD V G VP KIKEAYG TK +L N+GV+D ELETRGREA Sbjct 1 MAFSIPRDDLVRMDGLDVP---EAKIKEAYGRTKARTETELQNEGVTDPHELETRGREAG 57 Query 183 RAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQR 242 R AT+R VR LTGVPID FAEI+L GFYD+A++LGGV+VCLNHAV DSYSGA F AGRQ Sbjct 58 RDATIRTVRRLTGVPIDRFAEISLFGFYDVAKSLGGVEVCLNHAVSDSYSGAHFKAGRQT 117 Query 243 LNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKD 302 LNA Q+LAFVRQRHGLDNGDLDRTHRQQAF+ SV+ L+D+GTFT+LD+++ L+ VA+++ Sbjct 118 LNAKQSLAFVRQRHGLDNGDLDRTHRQQAFMLSVLNGLRDAGTFTSLDKVNGLVDVAQRN 177 Query 303 VVLSAGWD-EDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG- 360 VVLS+GW+ D + MG + G + F TLPVVRY DGQDVNI+DP AIR V AFG Sbjct 178 VVLSSGWNLVDWIQEMGTVEGQRITFTTLPVVRYSTFDGQDVNIVDPAAIRQRVQKAFGV 237 Query 361 ---SAPPTSQTAAAAKPNPS 377 A P++++AA A P S Sbjct 238 KATPAAPSTRSAATADPTVS 257 >gi|257056864|ref|YP_003134696.1| cell envelope-related function transcriptional attenuator common domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586736|gb|ACU97869.1| cell envelope-related function transcriptional attenuator common domain protein [Saccharomonospora viridis DSM 43017] Length=522 Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 204/524 (39%), Positives = 288/524 (55%), Gaps = 50/524 (9%) Query 12 RAVPQPSRIRKRLSRG---VMTLVSVVALLMTGAGYWVAHGALGGITISQAL---TPEDP 65 RAVP + R + G V+ +VSV+ L +TG + G + G+T++ + T E P Sbjct 26 RAVPASEQKRSKGGTGARIVLAMVSVLVLTITGYAWAAMKGLVDGLTMADVIGEDTGELP 85 Query 66 RSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADG-KV 124 + ILL+G+DSR D +GN LP +L +L+AG +D G NT+TLILVH+ DG K Sbjct 86 ADGARD--ILLVGMDSRVDAQGNPLPQDMLAKLNAGVAD-GELNTDTLILVHIPNDGRKA 142 Query 125 VAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARA 184 VA S+PRD +V +PG+ KI AY K E+L +GV+D +ELE R + Sbjct 143 VALSLPRDSYV---NIPGFGQHKINSAYARGKAAAKERLRQEGVTDEQELEVRSNQEGAK 199 Query 185 ATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLN 244 + V +LTG +D +A INL GFY++ +GGV+VCLN A D YSGA+F AGRQ ++ Sbjct 200 TLIATVEALTGQTVDNYASINLLGFYEITNAVGGVEVCLNQATRDPYSGANFKAGRQSIS 259 Query 245 AAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVV 304 ALAFVRQRHGL GDLDR RQQ FL+ + ++ +GT T+ +L+ L +K VV Sbjct 260 GVDALAFVRQRHGLLRGDLDRVVRQQVFLAGLANKVLSAGTLTDPGKLERLTEAIKKSVV 319 Query 305 LSAGWDEDLF-RRMGDLAGGNVEFRTLPVV--RYDNIDGQDVNIIDPTAIRAEVAAAFGS 361 ++ GWD F ++M D GG +EF T+P+ ++ DG + I+P+ +R VA G Sbjct 320 VNKGWDILSFAQQMKDFTGGQIEFHTIPIENPEFETPDGLAIK-INPSEVRNFVAKLSGR 378 Query 362 APPTSQTAAAAKPNPSTV-VDVVNAGSISGLASQVSGALLKRGYTAGQVRD---RESGDP 417 S T P P + VD+ N +I GLAS VS AL+ +G+T G+V + R+S Sbjct 379 KAEASPT-----PAPEEITVDIYNTSNIQGLASSVSEALVAQGFTQGEVANDTPRQS--- 430 Query 418 FTTAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAAT 477 + ++ +G + A+ VA LG + +P V+PGH+RV L APD Sbjct 431 --SVVQSASGERSSAEAVAAALGREIAVEENPDVSPGHVRV-------LLAPDYQQ---N 478 Query 478 STETSTYPLYGG---GTTTDPTPDQGA------PIDGGGVPCVN 512 T P GG GT+ P Q PI GV CVN Sbjct 479 GNSTPGAPAGGGNTPGTSVTGAPRQAGEEAAEQPITADGVTCVN 522 >gi|325672920|ref|ZP_08152614.1| CpsA protein [Rhodococcus equi ATCC 33707] gi|325556173|gb|EGD25841.1| CpsA protein [Rhodococcus equi ATCC 33707] Length=422 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 175/322 (55%), Positives = 213/322 (67%), Gaps = 10/322 (3%) Query 45 WVAHGAL-GGITISQAL---TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWS-VLKQLH 99 W AH L GI S AL T D S + NILLIGLDSRKD GNDLP V +LH Sbjct 43 WAAHHELTSGILRSGALDVLTGGDRNSRHGDSNILLIGLDSRKDMHGNDLPAEFVTDELH 102 Query 100 AGDSDDGGYNTNTLILVHVGADG-KVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQY 158 AGDSD GGYNTNTLIL+HV DG + A +IPRDD+V VPGY KIKEAYG+ K Sbjct 103 AGDSDAGGYNTNTLILLHVPGDGSRATAAAIPRDDYVD---VPGYGKHKIKEAYGMAKAD 159 Query 159 VAEQLANQGVSDRKELETRGREAARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGG 218 L QGV+D E E R R+A R +T+ V+ L VPID+FAE+NL GFYD+A+ LG Sbjct 160 ADADLEEQGVTDPAEREQRSRDAGRRSTIETVQKLLRVPIDHFAEVNLVGFYDIAEALGP 219 Query 219 VDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMR 278 ++VCLN V D YSGA+FPAGRQ L+ +QAL+FVRQRHGLDNGDLDRT RQQAFL++V+R Sbjct 220 LEVCLNAPVDDPYSGANFPAGRQMLDPSQALSFVRQRHGLDNGDLDRTRRQQAFLTAVLR 279 Query 279 ELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLFR-RMGDLAGGNVEFRTLPVVRYDN 337 L G F ++ ++ L + DVV+ D F R +L G ++F TLP+ Y Sbjct 280 NLDAGGMFGSVSKMRGLFDTVKSDVVVDDDLDPVSFALRARNLTRGELDFHTLPIEGYRT 339 Query 338 IDGQDVNIIDPTAIRAEVAAAF 359 +DGQ VNI+DP +RAEVA F Sbjct 340 VDGQAVNIVDPNRLRAEVAGLF 361 >gi|312141818|ref|YP_004009154.1| LytR family transcripiotnal regulator [Rhodococcus equi 103S] gi|311891157|emb|CBH50476.1| putative LytR family transcriptional regulator [Rhodococcus equi 103S] Length=424 Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 174/322 (55%), Positives = 212/322 (66%), Gaps = 10/322 (3%) Query 45 WVAHGAL-GGITISQAL---TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWS-VLKQLH 99 W AH L GI S AL T D S + NILLIGLDSRKD GNDLP V +LH Sbjct 43 WAAHHELTSGILRSGALDVLTGGDRNSRHGDSNILLIGLDSRKDMHGNDLPAEFVTDELH 102 Query 100 AGDSDDGGYNTNTLILVHVGADG-KVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQY 158 AGDSD GGYNTNTLIL+HV DG + A +IPRDD+V VPGY KIKEAYG+ K Sbjct 103 AGDSDAGGYNTNTLILLHVPGDGSRATAAAIPRDDYVD---VPGYGKHKIKEAYGMAKAD 159 Query 159 VAEQLANQGVSDRKELETRGREAARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGG 218 L QGV+D E E R R+A R +T+ V+ L VPID+FAE+NL GFYD+A+ LG Sbjct 160 ADADLEEQGVTDPAEREQRSRDAGRRSTIETVQKLLRVPIDHFAEVNLVGFYDIAEALGP 219 Query 219 VDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMR 278 ++VCLN V D YSGA+FPAGRQ L+ +QAL+FVRQRHGL NGDLDRT RQQAFL++V+R Sbjct 220 LEVCLNAPVDDPYSGANFPAGRQMLDPSQALSFVRQRHGLANGDLDRTRRQQAFLTAVLR 279 Query 279 ELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLFR-RMGDLAGGNVEFRTLPVVRYDN 337 L G F ++ ++ L + DVV+ D F R +L G ++F TLP+ Y Sbjct 280 NLDAGGMFGSVPKMRGLFDTVKSDVVVDDDLDPVSFALRARNLTRGELDFHTLPIEGYRT 339 Query 338 IDGQDVNIIDPTAIRAEVAAAF 359 +DGQ VNI+DP +RAEVA F Sbjct 340 VDGQAVNIVDPNRLRAEVAGLF 361 >gi|302526463|ref|ZP_07278805.1| transcriptional regulator [Streptomyces sp. AA4] gi|302435358|gb|EFL07174.1| transcriptional regulator [Streptomyces sp. AA4] Length=477 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 200/494 (41%), Positives = 273/494 (56%), Gaps = 38/494 (7%) Query 29 MTLVSVVALLMTGAGY-WVAHGAL-GGITISQALTPEDPRSS-GNNMNILLIGLDSRKDQ 85 + +V++VA+L+ GA Y W AL G+T S AL D RS G NIL++GLDSR D+ Sbjct 12 IGVVALVAVLLGGAAYGWAELRALLSGVTTSAAL---DGRSRPGGETNILVMGLDSRLDE 68 Query 86 EGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADG-KVVAFSIPRDDWVPFTGVP-GY 143 G LP + +QLHAGD GGYNT+ L+L+HV ADG SIPRDD+ G P G Sbjct 69 RGEPLPAELYEQLHAGDQHVGGYNTDVLMLLHVPADGGHPTVVSIPRDDYTDLAGCPDGV 128 Query 144 NHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRS-LTGVPIDYFA 202 KIKEAYG A++LA QGV+++ E R R+A RAA + VR L GV +D+F Sbjct 129 CQGKIKEAYGYAFAAEAKRLAAQGVTEKAAREQRARDAGRAAEVATVRQFLGGVAVDHFV 188 Query 203 EINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRH--GLDN 260 E+ L FY LAQ + + VCL A DSYSGADFPAG+QR++AAQALAFVRQR + Sbjct 189 EVTLVAFYQLAQVVQPITVCLAEATRDSYSGADFPAGQQRISAAQALAFVRQRRDPQREF 248 Query 261 GDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDED-LFRRMGD 319 DLDR RQQAFL S+ +L++ F + +L L++VA+++V + +G D + L R+ Sbjct 249 TDLDRERRQQAFLVSLAHQLKEGRVFGDPAKLGQLVSVAKENVAIDSGLDLNALARQAES 308 Query 320 LAGGNVEFRTLPVVRYD-NIDGQDVNIIDPTAIRAEVAAAFGSAPPTSQTAAAAKPNPST 378 AGG++ +LPV R++ + G+DVNI+DP IRA A G Sbjct 309 FAGGDLTLASLPVERFEKDAKGEDVNIVDPVKIRAAAARLLGRT-----VPPPPAATAGP 363 Query 379 VVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYGAGAETDAQNVADL 438 VDVVNA G A++V L RGY AG R + T + YG G + A + Sbjct 364 AVDVVNASGREGAAARVLKTLPSRGYRAG--RTSSAKHTHRTIVRYGRGDSSAAAKLVAA 421 Query 439 LGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTETSTYPLYGGGTTTDPTPD 498 LG D A+A G +++ + T+F T+ + P+ + P + Sbjct 422 LGGGYSVGYDGALAAGELKLVLGTDFR----------ETADQVDPVPV----SPVSPADE 467 Query 499 QGAPIDGGGVPCVN 512 + GGGVPCV Sbjct 468 ----LSGGGVPCVR 477 >gi|118473313|ref|YP_884523.1| cell envelope-related function transcriptional attenuator [Mycobacterium smegmatis str. MC2 155] gi|118174600|gb|ABK75496.1| cell envelope-related function transcriptional attenuator common domain [Mycobacterium smegmatis str. MC2 155] Length=533 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 182/444 (41%), Positives = 253/444 (57%), Gaps = 15/444 (3%) Query 31 LVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNMNILLIGLDSRKDQEGNDL 90 L + L TG G+ HGAL GIT S AL E S G+ NIL++GLDSR DQ GN L Sbjct 30 LTAAAILAGTGMGWVTYHGALDGITTSNALAGES-GSVGDTENILIMGLDSRLDQHGNPL 88 Query 91 PWSVLKQLHAGDSDDGGYNTNTLILVHVGADG-KVVAFSIPRDDWVPFTGVP-GYNHIKI 148 P V + LHAGD GGYN N LI+VH+ DG AFSIPRDD+V G P G K+ Sbjct 89 PEDVYQALHAGDETVGGYNANVLIVVHLPGDGGPATAFSIPRDDYVDLAGCPSGICKGKV 148 Query 149 KEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRSLTGVPIDYFAEINLAG 208 K+AYG Q + D E + REA R A + VR+L G+PID+F E+ L Sbjct 149 KQAYGFAYQ-AEMEATESEEEDPATREQKAREAGRKAEIATVRNLLGIPIDHFVEVTLGA 207 Query 209 FYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGLDN---GDLDR 265 F+++A+ + + VCLN D YSGADF G Q+++AAQA+AFVRQR +++ DLDR Sbjct 208 FFEIAKAVAPITVCLNDDTSDPYSGADFRKGVQQIDAAQAMAFVRQRRDINDENFTDLDR 267 Query 266 THRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLF-RRMGDLAGGN 324 T RQQAFL++++ L+ SG ++ +L L+ V +++V L AG+D F +R L Sbjct 268 TRRQQAFLAALVSALRQSGALSSPSKLRGLLDVTKQNVALDAGFDLASFTKRASALTDAP 327 Query 325 VEFRTLPVVRY-DNIDGQDVNIIDPTAIRAEVAAAFGSAPPTSQTAAAAKPNPS---TVV 380 TLP+ + N G+D+NIID IR V P + TA KP + + Sbjct 328 PTLYTLPIKEFGQNAYGEDINIIDVPTIRKIVHDLVSKDDPATTTATPDKPELNGHGATL 387 Query 381 DVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYGAGAETDAQNVADLLG 440 DV+N + +GLA+++ +T GQ+ D E+ +P TT I+YG GA+ A ++A LG Sbjct 388 DVINGSTYTGLAAKLQTTFAADNFTEGQIGDAEALEPATT-IDYGPGADAAAHSLATELG 446 Query 441 IDAPNHPDPAVAPGHIRVTVDTNF 464 + A P V +R+T+ T+F Sbjct 447 VTA--TPSDWVLADTVRLTIGTDF 468 >gi|300789507|ref|YP_003769798.1| LytR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299799021|gb|ADJ49396.1| LytR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|340531162|gb|AEK46367.1| LytR family transcriptional regulator [Amycolatopsis mediterranei S699] Length=557 Score = 293 bits (749), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 199/504 (40%), Positives = 275/504 (55%), Gaps = 33/504 (6%) Query 26 RGVMTLVSVVALLMTG-AGY-WVA-HGALGGITISQALTPED--PRSSGNNMNILLIGLD 80 RG ++VV+LL+ G GY W A G + G+ + + + + +ILL+GLD Sbjct 70 RGAKIALAVVSLLVVGLTGYAWAAMQGLVNGLNYTNVINDGGGGDKPADGARDILLVGLD 129 Query 81 SRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADG-KVVAFSIPRDDWVPFTG 139 SR D +GN LP VL +L AGD+D G NT++LI VH+ DG K VA S+PRD +V G Sbjct 130 SRTDAQGNPLPREVLDELRAGDAD-GELNTDSLIFVHIPNDGSKAVAISLPRDTYVDIPG 188 Query 140 VPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRSLTGVPID 199 GY KI AY + L +GV+D KEL+ + +A + V++LTG ID Sbjct 189 --GYGKHKINSAYARAMLTARKDLQKKGVTDPKELDVQANQAGARELIETVQNLTGSTID 246 Query 200 YFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGLD 259 +A +NL GF ++ + +GGVDVCLN+ V D YSGA+F G+ ++ +AL FVRQRHGL Sbjct 247 NYAAVNLLGFSEITKAVGGVDVCLNNTVKDEYSGANFTKGQHTISGVEALEFVRQRHGLP 306 Query 260 NGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLF-RRMG 318 NGDLDR RQQ F++ + R++ +GT TN +L++L+ +K VVLS WD F ++M Sbjct 307 NGDLDRVVRQQVFMAGMARKVLSAGTLTNPGKLNDLIDAIKKSVVLSQHWDIFGFAQQMK 366 Query 319 DLAGGNVEFRTLPVVRYDNIDGQDVNII--DPTAIRAEVAAAFG-----SAPPTSQTAAA 371 L GG +EFRT+PV D +D + I DPTA++ V G SAPP Q A Sbjct 367 GLTGGQLEFRTIPVKNIDYKTPEDGSAIQVDPTAVKQFVQGLAGPQPGESAPPAQQADPA 426 Query 372 AKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYGAGAETD 431 N +T VDV NA +GLA+ V+ L +G+T+G + S TT I G + Sbjct 427 ---NKATTVDVRNASGRTGLAAGVAKTLESKGFTSGDTSNATSRK--TTVIWVPKGGKDK 481 Query 432 AQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTETS---TYPLYG 488 Q VA LG D +VA GH+ V + ++ D + A TS T P G Sbjct 482 GQAVATALGGSPTIQEDKSVAAGHVTVFLGADYQGTTSDAGSGAGAPGATSQAATPPPAG 541 Query 489 GGTTTDPTPDQGAPIDGGGVPCVN 512 D+ PI GVPCVN Sbjct 542 A--------DEEKPITAEGVPCVN 557 >gi|302529696|ref|ZP_07282038.1| LytR family transcriptional regulator [Streptomyces sp. AA4] gi|302438591|gb|EFL10407.1| LytR family transcriptional regulator [Streptomyces sp. AA4] Length=496 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 196/509 (39%), Positives = 274/509 (54%), Gaps = 33/509 (6%) Query 23 RLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTP----EDPRSSGNNMNILLIG 78 R ++ +T+VS++ + +TG + G + G++ S + E P + ILL+G Sbjct 2 RGAKIALTVVSLLVMGLTGYAWASLQGLVNGLSYSDVIGEGAGGEKPADGARD--ILLVG 59 Query 79 LDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADG-KVVAFSIPRDDWVPF 137 LDSR D +GN L +L QL AG+SD G NT+TLILVH+ DG K VA S+PRD +V Sbjct 60 LDSRTDAQGNPLSPELLAQLRAGESD-GELNTDTLILVHIPNDGSKAVALSLPRDSYVD- 117 Query 138 TGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRSLTGVP 197 +PGY KI AY + L QGV+D KEL+ + +A + ++ LTG Sbjct 118 --IPGYGKHKINSAYARAMLQARKDLQAQGVTDPKELDVKANQAGAKLLIATIQQLTGST 175 Query 198 IDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHG 257 ID +A INL GF D+ + +GGVDVCL V D YSGA+F G+ ++ +AL FVRQRHG Sbjct 176 IDNYAAINLLGFSDITKAVGGVDVCLKDNVNDEYSGANFTKGQHTISGVEALEFVRQRHG 235 Query 258 LDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLF-RR 316 L GDLDR RQQ F++ + R++ +GT T+ +L+ L+ +K VVL+ WD F ++ Sbjct 236 LPRGDLDRVVRQQVFMAGMARKILSAGTLTDPSKLNALVDAIKKSVVLNQNWDIFSFAQQ 295 Query 317 MGDLAGGNVEFRTLPVVRYDNIDGQDVN-----IIDPTAIRAEVAAAFG-----SAPPTS 366 M L GG +EFRT+PV DN++ + N +DP ++A V G P Sbjct 296 MKGLTGGQLEFRTIPV---DNVEYRTPNDGVAVKVDPAKVKAFVQGLAGPQAGADGAPAQ 352 Query 367 QTAAAAKPNPS---TVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIE 423 Q A KP+ S T VDV NA +GLA+ VS L +G+TAG + S TT I Sbjct 353 QK--APKPDESHKDTTVDVRNASDRTGLAATVSKQLADKGFTAGDTDNASSRK--TTVIW 408 Query 424 YGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTETST 483 +G E Q VAD LG A D +V GH++V + +++ A + A + Sbjct 409 VPSGGEAAGQAVADALGTKATVQEDKSVPKGHVKVFLGSDYQPSAGASSGTGAAQAPPAQ 468 Query 484 YPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 T T P D PI GVPCVN Sbjct 469 QQSAPPSTPTGPGSDD-QPITADGVPCVN 496 >gi|256397863|ref|YP_003119427.1| cell envelope-related transcriptional attenuator [Catenulispora acidiphila DSM 44928] gi|256364089|gb|ACU77586.1| cell envelope-related transcriptional attenuator [Catenulispora acidiphila DSM 44928] Length=547 Score = 290 bits (741), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 198/501 (40%), Positives = 268/501 (54%), Gaps = 52/501 (10%) Query 26 RGVMTLVSVVALLMTGAGYWVAHGAL--GGITISQALTPEDPRSSG-------NNMNILL 76 R + +SVV +L TGA W + L GG T + ++ P G N++N+LL Sbjct 13 RVMAATLSVVVVLATGA-VWFGNKQLTSGGHT-TDSINQIKPGQQGYVAPHLGNDVNLLL 70 Query 77 IGLDSRKDQEGNDLPWSVLK-QLHAGDSDDGGYNTNTLILVHVGADG-KVVAFSIPRDDW 134 IGLDSRKD GNDLP S+++ +LHAG S G YNTN LIL+H+ A+G V A+SIPRD Sbjct 71 IGLDSRKDMNGNDLPTSLVEGELHAGSSAIGYYNTNVLILMHIPANGGTVTAYSIPRDSD 130 Query 135 VPFTG----VPGYNHI--------KIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAA 182 V G +PG + KIKEAYG K + +LA G+ D+ + E RE Sbjct 131 VERPGGPAAIPGLGTVQVPDMGKGKIKEAYGDAKNFADTKLAATGLKDKAKEEAESREVG 190 Query 183 RAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSY-----SGADFP 237 R AT+RAV++LTGV +D+ AE+NL GFYD +G + VCL YD +G + P Sbjct 191 REATIRAVQNLTGVHVDHLAEVNLLGFYDTVNAIGNIQVCLKAPAYDPIEDGAGTGLNLP 250 Query 238 AGRQRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMA 297 AG ++AA AL FVRQR L NGDLDRTHRQQAFL+SV ++L+ G ++ + L+ Sbjct 251 AGVSTIDAATALQFVRQRFHLPNGDLDRTHRQQAFLASVTQKLKQEGILNDIGSMQKLLD 310 Query 298 VARKDVVLSAGWDE-DLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVA 356 V + DVV+ GW D + +L GGN EF TLP I + +DP AI+ V Sbjct 311 VVKNDVVIDDGWSVLDFASQASNLTGGNAEFITLPTTGTVMIGTESALTVDPVAIKKTVT 370 Query 357 AAFG-----SAPPTSQTAAAAKPNPSTV---------VDVVNAGSISGLASQVSGALLKR 402 AF + PPT+ + A + P P+ + + N +GLA +VSGAL Sbjct 371 TAFTNDAAVAPPPTTASTAGSTPPPAPPSTTPTPQANISIENGTKTTGLALKVSGALFDA 430 Query 403 GYTAGQVRDRESGDPFTTAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDT 462 G + + + TT I YGAG E A+ + LG +V G I VT+ Sbjct 431 GIPVSKTGNGGNNVQHTT-IRYGAGEEALAKQLQAKLGTKTAPTASSSVPKGSIVVTIGY 489 Query 463 NFSLPAPDEATAAATSTETST 483 ++ LP A TST TST Sbjct 490 DYKLP------PAKTSTSTST 504 >gi|256375179|ref|YP_003098839.1| cell envelope-related transcriptional attenuator [Actinosynnema mirum DSM 43827] gi|255919482|gb|ACU34993.1| cell envelope-related transcriptional attenuator [Actinosynnema mirum DSM 43827] Length=732 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 199/510 (40%), Positives = 278/510 (55%), Gaps = 31/510 (6%) Query 15 PQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTP----EDPRSSGN 70 P PSR+R R + LVS LL TG GY + I + ++ E P+ Sbjct 242 PPPSRVRL-AGRTALALVSTAVLLATGYGYKNLNALTDNIATTDVISADAGGEKPQD--G 298 Query 71 NMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGAD-GKVVAFSI 129 +++IL++G+DSR D +GN LP +L +L AG S+DGG NT+TLIL+H+ D GK VA S Sbjct 299 SIDILMVGMDSRTDSKGNPLPQEILNELQAGGSEDGGLNTDTLILLHIPNDSGKAVAVSF 358 Query 130 PRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRA 189 PRD +V G GY KI AYG K E+L G S LE + R+A + + Sbjct 359 PRDSYVDIPG--GYGKHKINSAYGYGKNAALEELEGAGESG-TALELKARQAGSKSLIST 415 Query 190 VRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQAL 249 + +L+GV ID++AE+NL GFY++ + +GGVDVCLN+AV D SGADF G Q + +AL Sbjct 416 IENLSGVKIDHYAEVNLVGFYEITKAVGGVDVCLNNAVQDDLSGADFKKGPQTIQGREAL 475 Query 250 AFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGW 309 +FVRQR+GL GDLDR RQQ F++ + ++ +GT T+ +L +L+ K + L GW Sbjct 476 SFVRQRYGLLRGDLDRVVRQQVFMAGLANKVLSAGTLTDPGKLGDLIDALSKSITLDEGW 535 Query 310 DEDLF-RRMGDLAGGNVEFRTLPVVRYD---NIDGQDVNIIDPTAIRAEVAAAFGSAPPT 365 D F +M L GG++EF+T+P + + DG V II ++V F + Sbjct 536 DVLRFATQMKGLTGGSMEFKTIPTGNPELMTDSDGMAVEIIP-----SQVKKFFKDFAKS 590 Query 366 SQTAAAAKPNPSTV-VDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEY 424 + A +P+TV V+V NA I GLAS+V L+ + AG + ++ +A+ Y Sbjct 591 EEEKDKATVDPATVTVEVRNASGIPGLASRVLQELVALKFVAGDADNADADQ-VASAVLY 649 Query 425 GAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTETSTY 484 G G E AQ VAD LG D D VA G RV V +++ P A Sbjct 650 GKGGEAGAQAVADALG-DVEIKEDATVAAGTARVVVGSSYDGP------GVANLLGQRLL 702 Query 485 PLYGGGTTTD-PTPDQ-GAPIDGGGVPCVN 512 L GG T P DQ GA I+ GG+ CVN Sbjct 703 ALDGGFRTQQGPQEDQTGAEINAGGIRCVN 732 >gi|324997824|ref|ZP_08118936.1| cell envelope-related function transcriptional attenuator common domain protein [Pseudonocardia sp. P1] Length=490 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 197/507 (39%), Positives = 284/507 (57%), Gaps = 32/507 (6%) Query 16 QPSRIRKRLSRGVMTL--VSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNMN 73 +PS R+ L R +T+ +SV+ +L TG + + GGIT S L SSG N Sbjct 6 RPSAGRRWLRRFQVTVATLSVLTVLATGGVWALYRDVTGGITTSNLLFGG---SSGGEQN 62 Query 74 ILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADG-KVVAFSIPRD 132 ILL+G+DSR D +GN LP +L +L +G ++ G N++T+ILVHV DG AFSIPRD Sbjct 63 ILLVGVDSRTDAQGNPLPDEILAELRSG-AESGVLNSDTIILVHVPDDGGSATAFSIPRD 121 Query 133 DWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRS 192 V +PG K+ AY K A +L+ +GV+D K ++ +A R A + V++ Sbjct 122 SEVQ---IPGIGRNKVNAAYPQIKAQTASRLSGEGVTDPKRIDQESSQAGRQALIETVQN 178 Query 193 LTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFV 252 LTG+ ID++AE+NL GFY+L Q +GGV+VCL V D++SGADFPAG Q ++ ALAFV Sbjct 179 LTGLGIDHYAEVNLLGFYNLTQAIGGVEVCLKAPVSDTFSGADFPAGPQTISGGDALAFV 238 Query 253 RQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDED 312 RQRHGL GDL R +RQQ FL+SV ++ SGT T+ +L L+ V ++ VV+ +GWD Sbjct 239 RQRHGLAGGDLSRINRQQVFLASVANKVLSSGTLTDPAKLGALIDVVQQAVVIDSGWDIL 298 Query 313 LF-RRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVA----AAFGSAPPTSQ 367 F R +A G ++F T+P ++ DV +DP ++ VA AP + Sbjct 299 AFAREASQIAAGKMDFLTIPTGGPEDSSSGDVLSVDPQQVQDFVARHTEPPEDPAPAAEE 358 Query 368 TAAAAKPNPSTVV-DVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYG- 425 + A A P P+ VV DV N +GLA+QV+G L + G T G V + + D T+ + Y Sbjct 359 SDAGAAPPPTPVVADVGNGSGTTGLAAQVAGTLGQNGITPGAVGN--APDRTTSVVRYSQ 416 Query 426 AGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTETSTYP 485 A + A+ VA+ LG D AV G ++V + T+F D+ ++ P Sbjct 417 ADGDAAARRVAEALGGIGVEQSD-AVGQGRVQVLIGTDF-----DQQGGGGSAAGGGGAP 470 Query 486 LYGGGTTTDPTPDQGAPIDGGGVPCVN 512 G +T PI GGVPC++ Sbjct 471 ASSGAPST-------PPITAGGVPCID 490 >gi|254822358|ref|ZP_05227359.1| cell envelope-related function transcriptional attenuator [Mycobacterium intracellulare ATCC 13950] Length=525 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 203/521 (39%), Positives = 268/521 (52%), Gaps = 47/521 (9%) Query 26 RGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNMNILLIGLDSRKDQ 85 R V + S + +TG G+ H ALG I IS AL P S G+N NILL+GLDSR DQ Sbjct 18 RLVAGIASAFVMAITGIGWTGYHTALGRIIISHAL-PNGAASLGDNQNILLMGLDSRLDQ 76 Query 86 EGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVG-ADGKVVAFSIPRDDWVPFTGVPGYN 144 G LP V LHAGD GGYN N LI+VH+ DG V A SIPRDD+ G PG Sbjct 77 NGRPLPQEVYDALHAGDETSGGYNANVLIVVHISDRDGPVTAVSIPRDDYAELPGCPGSV 136 Query 145 HI-KIKEAYGLT-KQYVAEQLANQ----GVSDRKELETRGREAARAATLRAVRSLTGVPI 198 KIK+AYGL +Q + Q A G +D E REA R A + AV G+ + Sbjct 137 CTGKIKQAYGLAYQQSLNTQAAGDSGGAGSTDLAAREQTAREAGRKAEISAVSDFLGISV 196 Query 199 DYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGL 258 D+F E+ L FY +A+ + + VCLN DSYSGADF G QR++AA+A+AFVRQR Sbjct 197 DHFVEVTLGAFYQIAKAVEPITVCLNGDTRDSYSGADFHQGVQRIDAAEAMAFVRQRRDE 256 Query 259 DNG---DLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLF- 314 ++G D DRT RQQAFL S++ + G +++ L ++ VAR +V + AG D F Sbjct 257 NDGSFTDFDRTRRQQAFLVSLVEAARSGGALSSVSGLRKMLEVARDNVAVDAGLDLGQFA 316 Query 315 RRMGDLAGGNVEFRTLPVVRY-DNIDGQDVNIIDPTAIRAEVAAAF-------------- 359 R L G + TLP+ + + +G D+N++D AIR V F Sbjct 317 ARASRLTGRPLSLYTLPISGFGKDANGSDINLVDLAAIRRIVNERFMSDAPAALDAASPA 376 Query 360 GSAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFT 419 +PP A +P ++DVVNA S GLA+ + AL RG+T G + Sbjct 377 AQSPP-----ALTEP---VILDVVNASSRDGLAAALEEALTGRGFTRGSATTAAA-AADD 427 Query 420 TAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNF--------SLPAPDE 471 + IEYG GA+ AQ ++ L + P DP VA G +R+TV T F S P Sbjct 428 STIEYGPGADAGAQVLSGQLHV--PATADPTVASGTVRLTVGTRFPAADYLSHSEAEPGA 485 Query 472 ATAAATSTETSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 A A +S + S G G P P + + VPCV Sbjct 486 AGDAPSSGQVSAVSATGSGDHA-PAPTDLSQMTASSVPCVK 525 >gi|256396226|ref|YP_003117790.1| cell envelope-related transcriptional attenuator [Catenulispora acidiphila DSM 44928] gi|256362452|gb|ACU75949.1| cell envelope-related transcriptional attenuator [Catenulispora acidiphila DSM 44928] Length=382 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 169/335 (51%), Positives = 214/335 (64%), Gaps = 7/335 (2%) Query 32 VSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNMNILLIGLDSRKDQEGNDLP 91 +S+ LL++ G W+ LGG S AL P+S ++NILL+GLDSR+D G+DLP Sbjct 1 MSMSVLLISLTGAWLRAAVLGGFQRSAALGGTIPKSHDGSVNILLMGLDSRRDNHGHDLP 60 Query 92 WSVLKQLHAGDSDD-GGYNTNTLILVHVGADGK-VVAFSIPRDDWVPFTGVPGYNHIKIK 149 ++L +LHAG S D GGYNTNTLIL+HV ADG A S+PRDDWV +P KIK Sbjct 61 AAILSKLHAGSSSDIGGYNTNTLILLHVPADGSPATAVSVPRDDWVD---IPNLGWHKIK 117 Query 150 EAYGLTKQYVAEQLANQGVSDRKE-LETRGREAARAATLRAVRSLTGVPIDYFAEINLAG 208 EAYG K L G + LE GREA RAA++ AV+ L VPID+FAE+NLAG Sbjct 118 EAYGRAKAAQETALVKAGRGPTGDALEAAGREAGRAASIAAVQGLLNVPIDHFAEVNLAG 177 Query 209 FYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGLDNGDLDRTHR 268 FYD+A LGGV VCLN V D YSGA FPAG Q L+ + ALAFVRQRHGL GDLDRT R Sbjct 178 FYDVAVALGGVTVCLNKPVQDDYSGAAFPAGVQTLDGSNALAFVRQRHGLPGGDLDRTRR 237 Query 269 QQAFLSSVMRELQDSGTFTNLDRLDNLM-AVARKDVVLSAGWDEDLFRRMGDLAGGNVEF 327 QQAFLS+V R+L G +++ +L +L+ AV R VV + L + G L G ++F Sbjct 238 QQAFLSAVQRKLSADGVLSDVGKLSDLVDAVKRDVVVDDSFDVLSLISKAGSLKAGRIQF 297 Query 328 RTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFGSA 362 TLP+ + DG+DVN+IDP ++A + F A Sbjct 298 HTLPIEGFATRDGEDVNLIDPAKVQAAMKEYFSDA 332 >gi|41409663|ref|NP_962499.1| hypothetical protein MAP3565 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398495|gb|AAS06115.1| hypothetical protein MAP_3565 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459898|gb|EGO38810.1| cell envelope-related function transcriptional attenuator [Mycobacterium avium subsp. paratuberculosis S397] Length=516 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 207/516 (41%), Positives = 273/516 (53%), Gaps = 26/516 (5%) Query 16 QPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNMNIL 75 P R R V ++ S + +TG G+ H ALG I IS AL P S G+N NIL Sbjct 8 HPRRWVLLKGRLVASVASAFVMAVTGVGWTGYHTALGRIIISHAL-PNGAMSLGDNQNIL 66 Query 76 LIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVG-ADGKVVAFSIPRDDW 134 L+GLDSR DQ G LP + LHAGD GGYN N LI+VH+ DG V A SIPRDD+ Sbjct 67 LMGLDSRLDQNGRPLPPEIYDALHAGDESSGGYNANVLIIVHLSDGDGPVTAVSIPRDDY 126 Query 135 VPFTGVPGYNHI-KIKEAYGLT-KQYVAEQLANQ---GVSDRKELETRGREAARAATLRA 189 G PG KIK+AYGL +Q + Q A G +D E REA R A + A Sbjct 127 AELPGCPGSVCAGKIKQAYGLAYQQSLNAQAAGNSGAGATDLAAREQTAREAGRKAEIGA 186 Query 190 VRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQAL 249 V G+ +D+F E+ L F+ +A+ + + VCL DSYSGADF G QR++AA+A+ Sbjct 187 VTDFLGISVDHFVEVTLGAFFQIAKAVEPITVCLAGDTRDSYSGADFHQGVQRIDAAEAM 246 Query 250 AFVRQRHGLDNG---DLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLS 306 AFVRQR ++G D DRT RQQAFL S++ + G +++ L L+ VAR +V + Sbjct 247 AFVRQRRDENDGSFTDFDRTRRQQAFLVSLVEAARSGGALSSVSGLRKLLQVARDNVAVD 306 Query 307 AGWDEDLF-RRMGDLAGGNVEFRTLPVVRY-DNIDGQDVNIIDPTAIRAEVAAAFGSAPP 364 AG D F R LAG + TLP+ + + +G D+N++D IR V F S P Sbjct 307 AGLDLMQFAARASQLAGRPLSLYTLPISGFGKDPNGSDINLVDLPTIRRIVNERFMSDAP 366 Query 365 TSQTAAA------AKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPF 418 + AA P V+DVVNA + GLA+ + AL RG+T G + Sbjct 367 AALDAAVPGSQPPPAPAEPAVLDVVNATTHDGLAAALEEALAGRGFTRGSATTAPT-QAE 425 Query 419 TTAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEAT--AAA 476 ++IEYG GAE A+ +AD L + P AVAPG +R+TV T F PA D A+ Sbjct 426 DSSIEYGPGAEAAARLLADQLHL--PATAQSAVAPGTVRLTVGTAF--PAADYLAHPGAS 481 Query 477 TSTETSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 S + ST G G P P + + VPCV Sbjct 482 GSGQVSTVSATGTGDHA-PAPTDLSQMTATSVPCVK 516 >gi|118465380|ref|YP_884265.1| cell envelope-related function transcriptional attenuator [Mycobacterium avium 104] gi|254777490|ref|ZP_05219006.1| cell envelope-related function transcriptional attenuator [Mycobacterium avium subsp. avium ATCC 25291] gi|118166667|gb|ABK67564.1| cell envelope-related transcriptional attenuator domain family protein [Mycobacterium avium 104] Length=516 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 209/516 (41%), Positives = 274/516 (54%), Gaps = 26/516 (5%) Query 16 QPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNMNIL 75 P R R V ++ S + +TG G+ H ALG I IS AL P S G+N NIL Sbjct 8 HPRRWVLLKGRLVASVASAFVMAVTGVGWTGYHTALGRIIISHAL-PNGAMSLGDNQNIL 66 Query 76 LIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVG-ADGKVVAFSIPRDDW 134 L+GLDSR DQ G LP + LHAGD GGYN N LI+VH+ DG V A SIPRDD+ Sbjct 67 LMGLDSRLDQNGRPLPPEIYDALHAGDESSGGYNANVLIVVHLSDGDGPVTAVSIPRDDY 126 Query 135 VPFTGVPGYNHI-KIKEAYGLT-KQYVAEQLANQ---GVSDRKELETRGREAARAATLRA 189 G PG KIK+AYGL +Q + Q A G +D E REA R A + A Sbjct 127 AELPGCPGSVCAGKIKQAYGLAYQQSLNAQAAGNSGAGATDLAAREQTAREAGRKAEIGA 186 Query 190 VRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQAL 249 V G+ +D+F E+ L F+ +A+ + + VCL DSYSGADF G QR++AA+A+ Sbjct 187 VTDFLGISVDHFVEVTLGAFFQIAKAVEPITVCLAGDTRDSYSGADFHQGVQRIDAAEAM 246 Query 250 AFVRQRHGLDNG---DLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLS 306 AFVRQR ++G D DRT RQQAFL S++ + G +++ L L+ VAR +V + Sbjct 247 AFVRQRRDENDGSFTDFDRTRRQQAFLVSLVEAARSGGALSSVSGLRKLLQVARDNVAVD 306 Query 307 AGWDEDLF-RRMGDLAGGNVEFRTLPVVRY-DNIDGQDVNIIDPTAIRAEVAAAFGSAPP 364 AG D F R LAG + TLP+ + + +G D+N++D AIR V F S P Sbjct 307 AGLDLMQFAARASQLAGRPLSLYTLPISGFGKDPNGSDINLVDLPAIRRIVNERFMSDAP 366 Query 365 TSQTAA------AAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPF 418 + AA A P V+DVVNA + GLA+ V AL RG+T G + Sbjct 367 AALDAAVPGSQPPAAPAEPAVLDVVNATTHDGLAAAVEEALAGRGFTRGSATTAPT-QAE 425 Query 419 TTAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEAT--AAA 476 ++IEYG GAE A+ +AD L + P AVAPG +R+TV F PA D A+ Sbjct 426 DSSIEYGPGAEAAARLLADQLHL--PATAQSAVAPGTVRLTVGAAF--PAADYLAHPGAS 481 Query 477 TSTETSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 S + ST G G P P + + VPCV Sbjct 482 GSGQVSTVSATGTGDHA-PAPTDLSQMTATSVPCVK 516 >gi|213964851|ref|ZP_03393050.1| transcriptional regulator, LytR family [Corynebacterium amycolatum SK46] gi|213952387|gb|EEB63770.1| transcriptional regulator, LytR family [Corynebacterium amycolatum SK46] Length=528 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 194/517 (38%), Positives = 266/517 (52%), Gaps = 47/517 (9%) Query 24 LSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNM----------N 73 + R + L+S + L+++ G+W LG T D SG + + Sbjct 31 MLRNALVLLSAIILVISAVGWWT----LGRTT--------DNLGSGGDFGLGNEKDGATD 78 Query 74 ILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADGK-VVAFSIPRD 132 ILL+G DSR D +GN L ++ L AGD + NT+T+I++ V ADG A SIPRD Sbjct 79 ILLVGSDSRTDAQGNPLTPEEVELLRAGDEE--ATNTDTIIVIRVPADGSSATAISIPRD 136 Query 133 DWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRS 192 +V + + KI YG TKQ V E+LA G S +++E R EA R A + + Sbjct 137 TYVHTNRL---GNTKINGVYGNTKQMVEEELAGSGAS-PEDIERRSTEAGRRALIETISD 192 Query 193 LTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFV 252 L+G+ +D++AE+ L GF L +GGVDVCLN AVYD +SGADFPAG Q L A AL+FV Sbjct 193 LSGITVDHYAEVGLLGFVLLTDAIGGVDVCLNEAVYDEFSGADFPAGSQTLKGADALSFV 252 Query 253 RQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDED 312 RQRHGL GDLDR RQQ F++S +L +GT +N +L L ++ VVL WD Sbjct 253 RQRHGLPRGDLDRITRQQVFMASFTNKLLGAGTLSNPAKLSELGNAVQRSVVLDDNWDVT 312 Query 313 LF-RRMGDLAGGNVEFRTLPVVRYDNID--GQDVNIIDPTAIRAEVAAAFGS----APPT 365 F +M L+GGNV+F T+PV D + G+ V ID + G+ AP Sbjct 313 GFATQMQGLSGGNVKFETIPVTSIDGVGDYGESVVTIDKGQVHQYFETLLGTKEEEAPTK 372 Query 366 SQTAAAAKPNPS-TVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEY 424 + A PN + T V V NA I GLAS VSG L ++GYT G+V + E ++ I Sbjct 373 EEDEKKADPNAAETTVSVYNATGIEGLASGVSGFLTEKGYTQGEVGNAEFAGVASSQINA 432 Query 425 GAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPA-PDEATAAATSTETST 483 + AQ +++ LG P DP + P HI VT+ ++ P E AA + Sbjct 433 ADPEDPAAQAISEALG-GVPIVHDPYLDPHHISVTIAGDYEGPGLTSEGMAADSGDGAEP 491 Query 484 YPLYGGGTTTDPTPDQGA--------PIDGGGVPCVN 512 P G+ D +G ID GV CVN Sbjct 492 APEVEDGSNGDVIGQEGGAIPQEDRPAIDAAGVTCVN 528 >gi|291006156|ref|ZP_06564129.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length=503 Score = 270 bits (690), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 190/490 (39%), Positives = 257/490 (53%), Gaps = 39/490 (7%) Query 33 SVVALLMTGAGYWVAHGAL-GGITISQALTPEDPRSSGNNMNILLIGLDSRKDQEGNDLP 91 S + L++TG WV+ L GG++ S + ++ILL+GLD R D GN LP Sbjct 43 SGIVLVLTGYA-WVSLDRLQGGLSTSDVTAA----AEDGALDILLVGLDGRTDARGNPLP 97 Query 92 WSVLKQLHAGDSDDGGYNTNTLILVHVGAD-GKVVAFSIPRDDWVPFTGVPGYNHIKIKE 150 +L++L G++D T+TL+L+H+ D + VA+S+PRD +V G+ KI Sbjct 98 EELLRELRTGETDSS--LTDTLVLLHIPVDRSRTVAYSLPRDSYVSIPD--GHGKHKINS 153 Query 151 AYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRSLTGVPIDYFAEINLAGFY 210 AYG K QL QGV+D ELE R +A R +R V LTGV +D++AE+NL GFY Sbjct 154 AYGRAKAAAHAQLRAQGVADPAELERRSSDAGRKLLVRTVEKLTGVGVDHYAEVNLLGFY 213 Query 211 DLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGLDNGDLDRTHRQQ 270 L + +GGV+VCLN V D YSGA FPAGRQ ++ ALAFVRQRHGL GDLDR RQQ Sbjct 214 QLTRAIGGVEVCLNAPVNDPYSGARFPAGRQLISGGDALAFVRQRHGLPRGDLDRVQRQQ 273 Query 271 AFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLF-RRMGDLAGGNVEFRT 329 AF++ + R + +GT N RL+ + + VVL GWD F +M LAGG++ F T Sbjct 274 AFMAGLARSVLSTGTLANPARLNGMFDAVEQSVVLDQGWDVLAFAEQMQGLAGGDITFDT 333 Query 330 LPVV--RYDNIDGQDVNIIDPTAIRAEVAAAFGSAPPTSQTAAAAKPNP----STVVDVV 383 +PV YD DGQ V +DP + A + A P A P P + V+VV Sbjct 334 IPVEDPDYDTPDGQAVR-VDPRRVSAAIRRADDGLP-------AEPPRPPELERSAVEVV 385 Query 384 NAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYGAGAETDAQNVADLLGIDA 443 N +SGLAS+V L V D +G T+ + +GAG A+ VA LG Sbjct 386 NTTRVSGLASRVQEVLDAADIPVRDVDD--TGRARTSVVLHGAGGADVARYVAGHLG-GL 442 Query 444 PNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTETSTYPLYGGGTTTDPTPDQG-AP 502 P D ++ IRV + ++ P D A PL PT P Sbjct 443 PVRSDSSLRERRIRVLLGDDYRGPGADGLAPA---------PLVRLDGERQPTATASEEP 493 Query 503 IDGGGVPCVN 512 I+ +PCVN Sbjct 494 INADEIPCVN 503 >gi|134099455|ref|YP_001105116.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912078|emb|CAM02191.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length=521 Score = 269 bits (688), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 190/490 (39%), Positives = 257/490 (53%), Gaps = 39/490 (7%) Query 33 SVVALLMTGAGYWVAHGAL-GGITISQALTPEDPRSSGNNMNILLIGLDSRKDQEGNDLP 91 S + L++TG WV+ L GG++ S + ++ILL+GLD R D GN LP Sbjct 61 SGIVLVLTGYA-WVSLDRLQGGLSTSDVTAA----AEDGALDILLVGLDGRTDARGNPLP 115 Query 92 WSVLKQLHAGDSDDGGYNTNTLILVHVGAD-GKVVAFSIPRDDWVPFTGVPGYNHIKIKE 150 +L++L G++D T+TL+L+H+ D + VA+S+PRD +V G+ KI Sbjct 116 EELLRELRTGETDSS--LTDTLVLLHIPVDRSRTVAYSLPRDSYVSIPD--GHGKHKINS 171 Query 151 AYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVRSLTGVPIDYFAEINLAGFY 210 AYG K QL QGV+D ELE R +A R +R V LTGV +D++AE+NL GFY Sbjct 172 AYGRAKAAAHAQLRAQGVADPAELERRSSDAGRKLLVRTVEKLTGVGVDHYAEVNLLGFY 231 Query 211 DLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGLDNGDLDRTHRQQ 270 L + +GGV+VCLN V D YSGA FPAGRQ ++ ALAFVRQRHGL GDLDR RQQ Sbjct 232 QLTRAIGGVEVCLNAPVNDPYSGARFPAGRQLISGGDALAFVRQRHGLPRGDLDRVQRQQ 291 Query 271 AFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLF-RRMGDLAGGNVEFRT 329 AF++ + R + +GT N RL+ + + VVL GWD F +M LAGG++ F T Sbjct 292 AFMAGLARSVLSTGTLANPARLNGMFDAVEQSVVLDQGWDVLAFAEQMQGLAGGDITFDT 351 Query 330 LPVV--RYDNIDGQDVNIIDPTAIRAEVAAAFGSAPPTSQTAAAAKPNP----STVVDVV 383 +PV YD DGQ V +DP + A + A P A P P + V+VV Sbjct 352 IPVEDPDYDTPDGQAVR-VDPRRVSAAIRRADDGLP-------AEPPRPPELERSAVEVV 403 Query 384 NAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYGAGAETDAQNVADLLGIDA 443 N +SGLAS+V L V D +G T+ + +GAG A+ VA LG Sbjct 404 NTTRVSGLASRVQEVLDAADIPVRDVDD--TGRARTSVVLHGAGGADVARYVAGHLG-GL 460 Query 444 PNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTETSTYPLYGGGTTTDPTPDQG-AP 502 P D ++ IRV + ++ P D A PL PT P Sbjct 461 PVRSDSSLRERRIRVLLGDDYRGPGADGLAPA---------PLVRLDGERQPTATASEEP 511 Query 503 IDGGGVPCVN 512 I+ +PCVN Sbjct 512 INADEIPCVN 521 >gi|169630541|ref|YP_001704190.1| hypothetical protein MAB_3460c [Mycobacterium abscessus ATCC 19977] gi|169242508|emb|CAM63536.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=508 Score = 266 bits (680), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 185/522 (36%), Positives = 261/522 (50%), Gaps = 52/522 (9%) Query 29 MTLVSVVALLMTGAGY-WVAHGALGGITISQALTPEDPRSSGNNMNILLIGLDSRKDQEG 87 M + +V A +M G+ W + G I+ + P G + NILL+GLDSR DQ G Sbjct 1 MVVGAVAAFVMAITGFGWAGYNTAVGQIITSHVLPGVLTPVGQDQNILLMGLDSRLDQNG 60 Query 88 NDLPWSVLKQLHAGDSDDGGYNTNTLILVHV-GADGKVVAFSIPRDDWVPFTGVPG-YNH 145 LP + LHAGD GGYN N LI+VH+ G G + A SIPRDD+V G PG Sbjct 61 QPLPQDMYDALHAGDETSGGYNANVLIVVHIPGNGGPISAVSIPRDDYVNLVGCPGSVCK 120 Query 146 IKIKEAYGLTKQYVAEQLAN-----QGVSDRKELETRGREAARAATLRAVRSLTGVPIDY 200 K+K+AYG Q + AN G D E REA R A + V GV ID+ Sbjct 121 GKVKQAYGFAYQQALDAQANGSADAAGAKDLTAREQAAREAGRKAQIDTVSEFLGVQIDH 180 Query 201 FAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGLDN 260 F E+ LA F+ +A+T+ + VCLNH D +SGA+F G Q+++A+QA+AFVRQR ++ Sbjct 181 FVEVTLAAFFQIAKTVQPIAVCLNHDTIDEFSGANFHEGVQQIDASQAMAFVRQRRDEND 240 Query 261 G---DLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWD-EDLFRR 316 G D+DRT RQQAFL S++ ++ G +N + N++ VA ++V + +G + D R Sbjct 241 GSFTDMDRTRRQQAFLVSLLAAVRQGGAMSNPAAIRNILNVAHENVAIDSGLNIVDFAAR 300 Query 317 MGDLAGGNVEFRTLPVVRYD-NIDGQDVNIIDPTAIRAEVAAAFGSAP-----PTSQTAA 370 +L F TLP+ + + +G DVNI+D IR V F S P + +A Sbjct 301 ASELTKRPTSFYTLPISDFGADSNGSDVNIVDLPTIRQIVHDRFSSDPVPEAPSAAAASA 360 Query 371 AAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYGAGAET 430 + V++VVNA S GLA+ V A RG+T G+ E+ ++I YG A+ Sbjct 361 PPALSTPVVLNVVNATSRDGLAAAVEDAFTARGFTRGRASTAET-QSTESSIMYGEDAQE 419 Query 431 DAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSL--------------------PAPD 470 AQ +AD L + P AVAPG +++TV + F + PA Sbjct 420 GAQALADQLHL--PMTESGAVAPGTVQLTVGSQFPVDNYIAHHSGGAKGGSSGEADPADK 477 Query 471 EATAAATSTETSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN 512 AAT T P P + + G+PCV Sbjct 478 MTAVAATGTGVQA-----------PAPTDLSQLTANGIPCVK 508 >gi|342859419|ref|ZP_08716073.1| cell envelope-related function transcriptional attenuator [Mycobacterium colombiense CECT 3035] gi|342133660|gb|EGT86863.1| cell envelope-related function transcriptional attenuator [Mycobacterium colombiense CECT 3035] Length=521 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 191/500 (39%), Positives = 253/500 (51%), Gaps = 35/500 (7%) Query 39 MTGAGYWVAHGALGGITISQALTPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQL 98 +TG G+ H ALG I IS AL+ GN NILL+GLDSR DQ G LP V + L Sbjct 31 ITGMGWTGYHTALGKIIISHALSNAATTLDGNQ-NILLMGLDSRLDQNGKPLPQDVYEAL 89 Query 99 HAGDSDDGGYNTNTLILVHVG-ADGKVVAFSIPRDDWVPFTGVPGYNHI-KIKEAYGLTK 156 HAGD GGYN N LI+VH+ DG V A SIPRDD+ G PG KIK+AYGL Sbjct 90 HAGDESSGGYNANVLIVVHISDGDGPVTAISIPRDDYAELPGCPGSVCAGKIKQAYGLAY 149 Query 157 QYVAEQLANQGVSDRKEL--------ETRGREAARAATLRAVRSLTGVPIDYFAEINLAG 208 Q + L +Q + E REA R A + AV G+ +D+F E+ L Sbjct 150 Q---QSLNSQAAGNSGGAGANNLTAREQTAREAGRKAEINAVNDFLGISVDHFVEVTLGA 206 Query 209 FYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGLDNG---DLDR 265 F+ +A+ + + VCLN DSYSGADF G QR++AA A+AFVRQR ++G D DR Sbjct 207 FFQIAKAVEPITVCLNADTRDSYSGADFHQGVQRIDAADAMAFVRQRRDENDGSFTDFDR 266 Query 266 THRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWD-EDLFRRMGDLAGGN 324 T RQQAFL S++ + G +++ L L+ VAR +V + G D + R L+ Sbjct 267 TRRQQAFLVSLVNAARSGGALSSVSGLRKLLQVARDNVAVDDGLDIMEFASRATQLSERP 326 Query 325 VEFRTLPVVRY-DNIDGQDVNIIDPTAIRAEVAAAFGSAPPTS------QTAAAAKPNPS 377 + TLP+ + + +G D+N +D IR V F S P + P Sbjct 327 LSLYTLPIAGFGKDANGSDINQVDLPTIRRIVNERFMSDTPVALQAASPAAQPLPAPAEP 386 Query 378 TVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPF-TTAIEYGAGAETDAQNVA 436 ++DVVNA S GLA V A RG+T G + P + IEYG GA+ AQ +A Sbjct 387 AILDVVNATSRDGLAGAVEEAFAGRGFTRGSA--TTAAVPADDSVIEYGPGADRAAQVLA 444 Query 437 DLLGIDAPNHPDPAVAPGHIRVTVDTNF----SLPAPDEATAAATSTETSTYPLYGGGTT 492 D L + A + D VA G +R+TV +F L P T + S + S G G Sbjct 445 DQLHLPATANND--VAAGTVRLTVGAHFPAGDYLAHPGATTDLSGSGQVSAVAATGTGDR 502 Query 493 TDPTPDQGAPIDGGGVPCVN 512 P P + + VPCV Sbjct 503 A-PAPTDLSQMTAANVPCVK 521 >gi|302530396|ref|ZP_07282738.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302439291|gb|EFL11107.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=429 Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 145/333 (44%), Positives = 201/333 (61%), Gaps = 11/333 (3%) Query 41 GAGYWVAHGALGGITISQALTPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHA 100 G G+ HG + G+ +S L + S G + NIL++GLDSR D+ GN LP + LHA Sbjct 65 GYGWAAYHGIVSGLQVSDVLDGQS-TSGGGDTNILIMGLDSRLDENGNPLPKDIYNSLHA 123 Query 101 GDSDDGGYNTNTLILVHVGADG-KVVAFSIPRDDWVPFTGVP-GYNHIKIKEAYGLTKQY 158 GD DGGYN N L+L+HV DG K + SIPRDD+VP G P KIK+AYGL Sbjct 124 GDQQDGGYNANVLMLLHVPGDGGKATSISIPRDDYVPLAGCPDNVCKGKIKQAYGLAFDE 183 Query 159 VAEQLANQGVSDRKELETRGREAARAATLRAVRSLTG-VPIDYFAEINLAGFYDLAQTLG 217 A+QL +Q V+D+ + E + R+A R A + VR G VPID+F E+ L F+++AQ + Sbjct 184 KAKQLISQNVTDKSQREQQARDAGRRAEIDTVRRFLGDVPIDHFVEVTLVAFFEIAQVVQ 243 Query 218 GVDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRH-----GLDNGDLDRTHRQQAF 272 + VCLN DSYSGA+F AG+Q ++A QA+ FVRQR L+ DLDR RQQAF Sbjct 244 PITVCLNEDTQDSYSGANFHAGQQEISAEQAVEFVRQRRDNVHPALNFTDLDRERRQQAF 303 Query 273 LSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWD-EDLFRRMGDLAGGNVEFRTLP 331 ++S+ +L+ GTFTN +L +M VA+++ + + D L ++ L GGNV F TLP Sbjct 304 IASLAYQLKQGGTFTNPAKLQGIMDVAKQNTAVDSSLDLLALAKQASSLTGGNVSFVTLP 363 Query 332 VVRY-DNIDGQDVNIIDPTAIRAEVAAAFGSAP 363 V + + G+DVN ++ I+A VA P Sbjct 364 VDHFGKSPSGEDVNFVNTPQIQALVAQLLSGTP 396 >gi|256391109|ref|YP_003112673.1| cell envelope-related transcriptional attenuator [Catenulispora acidiphila DSM 44928] gi|256357335|gb|ACU70832.1| cell envelope-related transcriptional attenuator [Catenulispora acidiphila DSM 44928] Length=664 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 156/372 (42%), Positives = 208/372 (56%), Gaps = 26/372 (6%) Query 29 MTLVSVVALLMTGAGYWVA-HGALGGITISQALTPEDPRSSG-------NNMNILLIGLD 80 + + A+++ A W H G+ S A+ G ++N+LLIGLD Sbjct 72 LACTTSAAIVLASAAIWAEYHNLTSGLLTSNAINEIRSGEKGYVAPHLDGSVNLLLIGLD 131 Query 81 SRKDQEGNDLPWSVLKQ-LHAGDSDDGGYNTNTLILVHVGADG-KVVAFSIPRDDWVPFT 138 SRKD GNDLP ++Q LHAG S+ GGYN N LI +H+ ADG +V AFSI RDD+V Sbjct 132 SRKDMNGNDLPTDFVEQELHAGSSEIGGYNANVLIFLHIPADGGRVTAFSIARDDYVEEP 191 Query 139 G-------VPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAVR 191 G +P KIKEAYG K ++L G++D+ ++E RE R +T+RAV+ Sbjct 192 GGSSAVGDIPDLGMHKIKEAYGRAKAIAVDRLKASGMTDQAQIEKVSREVGRESTIRAVQ 251 Query 192 SLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSY-----SGADFPAGRQRLNAA 246 LTG +D+ AEINL GFYD+AQ +G ++VCLNH V D +G PAG L+AA Sbjct 252 LLTGEHVDHLAEINLLGFYDVAQAVGPIEVCLNHPVNDPIEDGAGTGLKLPAGHSMLDAA 311 Query 247 QALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLS 306 AL FVRQR L GD DR RQQAFL++VM +L+ G +L ++ L V +KDVV+ Sbjct 312 TALQFVRQRFHLLRGDFDRNRRQQAFLAAVMHKLKSEGVIGDLGKMQALFDVVKKDVVID 371 Query 307 AGWDE-DLFRRMGDLAGGNVEFRTLPVVRYDNI--DGQDVNIIDPTAIRAEVAAAFGSAP 363 WD D R +L GGN +FR LP+ + DG VN ++P IR V FG A Sbjct 372 DSWDVLDFADRAQNLTGGNADFRELPITGQPVLPADGS-VNTVNPLQIRQIVMTGFGDAK 430 Query 364 PTSQTAAAAKPN 375 + A A N Sbjct 431 EFATEMAQATEN 442 >gi|302524294|ref|ZP_07276636.1| predicted protein [Streptomyces sp. AA4] gi|302433189|gb|EFL05005.1| predicted protein [Streptomyces sp. AA4] Length=493 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 171/447 (39%), Positives = 237/447 (54%), Gaps = 14/447 (3%) Query 72 MNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADGK-VVAFSIP 130 ++ILL+G DSR D +GN LP VL LHAG++D G T+T+ILVH+ +G+ +A S P Sbjct 55 IDILLVGQDSRTDAQGNPLPREVLDMLHAGEAD-GEKQTDTMILVHIPQNGEHAIAISFP 113 Query 131 RDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGREAARAATLRAV 190 RD +V TG G+ K+ AY A+ L +G +D K+++ + + A R + + Sbjct 114 RDSYVEITG--GFGKHKLNSAYVYAYNDTAKTLQAKGNTDLKDVDEKAKLAGRKNLVATL 171 Query 191 RSLTGVP--IDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQRLNAAQA 248 G P ID +AE+NLA FY++ + +GGV VCL + V + SG D PAG+Q + QA Sbjct 172 EKFIGKPGMIDRYAEVNLASFYEVTKAIGGVQVCLKNPVKEKKSGVDLPAGKQTIEGVQA 231 Query 249 LAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAG 308 LAFVRQR+GL NGDLDR RQQAFLS + ++ S N R+ L+ +K VVLSAG Sbjct 232 LAFVRQRYGLQNGDLDRIARQQAFLSGLASKVLSSEVLANPVRIAQLIEAVKKSVVLSAG 291 Query 309 WD-EDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEV--AAAFGSAPPT 365 WD + +M L GGNVEF T+P + G DV +DP +RAEV + GSAP Sbjct 292 WDLSEFVEQMRGLTGGNVEFHTIPTEGNAVMGGADVLRVDPAKVRAEVNRLTSDGSAPTP 351 Query 366 SQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEYG 425 S A P + + GS +G A Q+ G L ++G+ G + TT + Y Sbjct 352 SN---APLPGAGQITVELFDGSGTGAADQMRGLLQEKGFQLGTSTKLST--RATTVLRYH 406 Query 426 AGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTETSTYP 485 E A V LG +A PD VA GH+RV + + A AT ++ Sbjct 407 PSDEAAADLVRQALGSNAQAEPDADVAAGHVRVILGKDARDAAQAPATTSSAPPAAPPAS 466 Query 486 LYGGGTTTDPTPDQGAPIDGGGVPCVN 512 G + + I G VPCVN Sbjct 467 SPSGPPPSSSSTSPAPVITAGDVPCVN 493 >gi|331698966|ref|YP_004335205.1| cell envelope-related transcriptional attenuator [Pseudonocardia dioxanivorans CB1190] gi|326953655|gb|AEA27352.1| cell envelope-related transcriptional attenuator [Pseudonocardia dioxanivorans CB1190] Length=541 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 164/396 (42%), Positives = 227/396 (58%), Gaps = 21/396 (5%) Query 40 TGAGYWVAHGALGGITISQALTPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLH 99 TG + + G+T + + D G +NILL+G+DSR D +GN LP +V LH Sbjct 78 TGTAWGLYRDVTAGLTTTDVIFGGD---DGQGLNILLVGIDSRTDAQGNPLPKAVTDALH 134 Query 100 AGDSDDGGYNTNTLILVHVGADG-KVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQY 158 +G +D G N++T+IL+H+ ADG VAFSIPRD +V +PGY KI AY TK Sbjct 135 SG-ADTGVLNSDTIILLHLPADGGAAVAFSIPRDSYV---SIPGYRKDKINAAYPATKAL 190 Query 159 VAEQLANQGVSDRKELETRGREAARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGG 218 A L Q S KE++T A R+ + V+ LTGV +D++AEINL GFY+L Q +GG Sbjct 191 AAADLVKQRKS-AKEVDTESSAAGRSKLIETVQDLTGVHVDHYAEINLLGFYNLTQAVGG 249 Query 219 VDVCLNHAVYDSYSGADFPAGRQRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMR 278 VDVCL + V D SGA+FPAG Q ++ A AL+FVRQRHGL GDL R RQQ FL+++ Sbjct 250 VDVCLKNPVSDELSGANFPAGPQTISGAAALSFVRQRHGLPEGDLSRIRRQQVFLAAMAD 309 Query 279 ELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLF-RRMGDLAGGNVEFRTLPVVRYDN 337 ++ SGT TN L L+ A+K +V+ +GWD F R+ D+A G++EF T+P + Sbjct 310 KILSSGTLTNPSTLRALVDAAQKSLVIDSGWDLLGFARQASDIAAGHIEFMTIPTQGGQS 369 Query 338 IDGQDVNIIDPTAIRAEV---------AAAFGSAPPTSQTAAAAKPNPSTVVDVVNAGSI 388 D DV ++DP ++ V A+ + P + A A + VDV NA Sbjct 370 NDRGDVVLVDPGQVKKFVTDRTEATDDVASSAATTPPAADDAPAVAPHTVTVDVGNASGR 429 Query 389 SGLASQVSGALLKRGYTAGQVRDRESGDPFTTAIEY 424 +GLA QV+ L GY G V + + TTA+ Y Sbjct 430 TGLAGQVADTLSAAGYVRGTVGNAPTA--ATTAVRY 463 Lambda K H 0.316 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1113865195328 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40