BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3488 Length=107 Score E Sequences producing significant alignments: (Bits) Value gi|15610624|ref|NP_218005.1| hypothetical protein Rv3488 [Mycoba... 213 1e-53 gi|31794664|ref|NP_857157.1| hypothetical protein Mb3518 [Mycoba... 209 9e-53 gi|118619242|ref|YP_907574.1| hypothetical protein MUL_4050 [Myc... 182 2e-44 gi|183984944|ref|YP_001853235.1| hypothetical protein MMAR_4976 ... 180 5e-44 gi|297196677|ref|ZP_06914075.1| transcriptional regulator [Strep... 169 8e-41 gi|126434037|ref|YP_001069728.1| PadR family transcriptional reg... 158 3e-37 gi|240170044|ref|ZP_04748703.1| hypothetical protein MkanA1_1207... 150 9e-35 gi|284045886|ref|YP_003396226.1| PadR family transcriptional reg... 129 1e-28 gi|89097722|ref|ZP_01170610.1| probable transcriptional regulato... 106 1e-21 gi|319652032|ref|ZP_08006153.1| transcriptional regulator [Bacil... 103 7e-21 gi|11499137|ref|NP_070371.1| hypothetical protein AF1542 [Archae... 102 3e-20 gi|307718308|ref|YP_003873840.1| transcriptional regulator, PadR... 102 3e-20 gi|169830797|ref|YP_001716779.1| PadR-like family transcriptiona... 101 4e-20 gi|228933724|ref|ZP_04096571.1| hypothetical protein bthur0009_2... 100 7e-20 gi|49477685|ref|YP_036529.1| PadR family transcriptional regulat... 100 7e-20 gi|340357698|ref|ZP_08680308.1| PadR family transcriptional regu... 100 9e-20 gi|310657843|ref|YP_003935564.1| PadR family transcriptional reg... 99.8 1e-19 gi|188585767|ref|YP_001917312.1| transcriptional regulator, PadR... 99.8 1e-19 gi|229916770|ref|YP_002885416.1| PadR family transcriptional reg... 98.6 3e-19 gi|149180416|ref|ZP_01858921.1| hypothetical protein BSG1_05335 ... 98.6 3e-19 gi|289522258|ref|ZP_06439112.1| transcriptional regulator, PadR ... 97.8 4e-19 gi|317129495|ref|YP_004095777.1| transcriptional regulator PadR ... 97.4 5e-19 gi|94271314|ref|ZP_01291932.1| Transcriptional regulator PadR-li... 97.4 6e-19 gi|315231397|ref|YP_004071833.1| transcriptional regulator [Ther... 97.4 6e-19 gi|158320304|ref|YP_001512811.1| PadR-like family transcriptiona... 97.4 7e-19 gi|296034627|gb|ADG85153.1| putative transcriptional regulator [... 97.1 7e-19 gi|94263551|ref|ZP_01287362.1| Transcriptional regulator PadR-li... 97.1 7e-19 gi|319648256|ref|ZP_08002473.1| hypothetical protein HMPREF1012_... 97.1 7e-19 gi|52082385|ref|YP_081176.1| hypothetical protein BL00565 [Bacil... 96.7 1e-18 gi|15613138|ref|NP_241441.1| hypothetical protein BH0575 [Bacill... 95.9 2e-18 gi|302386669|ref|YP_003822491.1| transcriptional regulator, PadR... 95.5 2e-18 gi|268325283|emb|CBH38871.1| conserved hypothetical protein, tra... 95.1 3e-18 gi|268325720|emb|CBH39308.1| conserved hypothetical protein, Pad... 94.7 3e-18 gi|270308117|ref|YP_003330175.1| transcriptional regulator, PadR... 94.4 5e-18 gi|212223155|ref|YP_002306391.1| protein TON_0011 [Thermococcus ... 94.4 6e-18 gi|182417758|ref|ZP_02949076.1| transcriptional regulator, PadR ... 94.0 7e-18 gi|183219793|ref|YP_001837789.1| PadR family transcriptional reg... 93.2 1e-17 gi|73748615|ref|YP_307854.1| hypothetical protein cbdb_A784 [Deh... 93.2 1e-17 gi|220923044|ref|YP_002498346.1| transcriptional regulator, PadR... 93.2 1e-17 gi|343178737|emb|CCC57825.1| transcriptional regulator, PadR fam... 92.4 2e-17 gi|33359325|ref|NP_877788.1| hypothetical protein PH0718.1n [Pyr... 92.0 3e-17 gi|242399649|ref|YP_002995074.1| Transcriptional regulator, padR... 92.0 3e-17 gi|150389377|ref|YP_001319426.1| PadR-like family transcriptiona... 92.0 3e-17 gi|254521458|ref|ZP_05133513.1| transcriptional regulator, PadR ... 91.7 3e-17 gi|2665590|gb|AAB88443.1| SQ1_IV [Rhodococcus erythropolis] 91.7 4e-17 gi|57641589|ref|YP_184067.1| ParR family transcriptional regulat... 91.7 4e-17 gi|23100732|ref|NP_694199.1| hypothetical protein OB3277 [Oceano... 91.7 4e-17 gi|240103501|ref|YP_002959810.1| Transcription regulator, PadR-l... 91.3 5e-17 gi|147669374|ref|YP_001214192.1| PadR family transcriptional reg... 90.9 5e-17 gi|160901704|ref|YP_001567285.1| PadR-like family transcriptiona... 90.5 7e-17 >gi|15610624|ref|NP_218005.1| hypothetical protein Rv3488 [Mycobacterium tuberculosis H37Rv] gi|15843100|ref|NP_338137.1| hypothetical protein MT3592 [Mycobacterium tuberculosis CDC1551] gi|148663352|ref|YP_001284875.1| hypothetical protein MRA_3528 [Mycobacterium tuberculosis H37Ra] 73 more sequence titles Length=107 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 107/107 (100%), Positives = 107/107 (100%), Gaps = 0/107 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ Sbjct 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLGGQSHTAGNGT 107 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLGGQSHTAGNGT Sbjct 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLGGQSHTAGNGT 107 >gi|31794664|ref|NP_857157.1| hypothetical protein Mb3518 [Mycobacterium bovis AF2122/97] gi|121639407|ref|YP_979631.1| hypothetical protein BCG_3552 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991903|ref|YP_002646592.1| hypothetical protein JTY_3552 [Mycobacterium bovis BCG str. Tokyo 172] gi|31620261|emb|CAD95704.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121495055|emb|CAL73541.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224775018|dbj|BAH27824.1| hypothetical protein JTY_3552 [Mycobacterium bovis BCG str. Tokyo 172] gi|341603428|emb|CCC66109.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=107 Score = 209 bits (533), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 106/107 (99%), Positives = 106/107 (99%), Gaps = 0/107 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ Sbjct 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLGGQSHTAGNGT 107 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLG QSHTAGNGT Sbjct 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLGRQSHTAGNGT 107 >gi|118619242|ref|YP_907574.1| hypothetical protein MUL_4050 [Mycobacterium ulcerans Agy99] gi|118571352|gb|ABL06103.1| conserved hypothetical transcriptional regulator (PadR-like family) [Mycobacterium ulcerans Agy99] Length=100 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/99 (91%), Positives = 95/99 (96%), Gaps = 0/99 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 MREFQRAAVRLHILHHAAD+EVHGAWLT+ELSRHGY+V+PGTLYPTLHRLEADGLL+SEQ Sbjct 1 MREFQRAAVRLHILHHAADDEVHGAWLTEELSRHGYKVNPGTLYPTLHRLEADGLLLSEQ 60 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLGGQ 99 RVVDGR RRVYRATPAGRAALTEDRRAL ELAREVLG Sbjct 61 RVVDGRTRRVYRATPAGRAALTEDRRALRELAREVLGSD 99 >gi|183984944|ref|YP_001853235.1| hypothetical protein MMAR_4976 [Mycobacterium marinum M] gi|183178270|gb|ACC43380.1| conserved hypothetical transcriptional regulator (PadR-like family) [Mycobacterium marinum M] Length=100 Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 90/99 (91%), Positives = 94/99 (95%), Gaps = 0/99 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 MREFQRAAVRLHILHHAAD+EVHGAWLT+ELSRHGY+VSPGTLYPTLHRLEADGLL+SEQ Sbjct 1 MREFQRAAVRLHILHHAADDEVHGAWLTEELSRHGYKVSPGTLYPTLHRLEADGLLLSEQ 60 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLGGQ 99 RVVDGR RRVYRAT AGRAALTEDRRAL ELAREVLG Sbjct 61 RVVDGRTRRVYRATSAGRAALTEDRRALRELAREVLGSD 99 >gi|297196677|ref|ZP_06914075.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297153337|gb|EFH32306.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length=101 Score = 169 bits (429), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 84/100 (84%), Positives = 91/100 (91%), Gaps = 0/100 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 MREFQR AVRLHILHHAA+ E+HGAW+T+EL+ HGYR+SPGTLYPTLHRLEADGLLVSEQ Sbjct 1 MREFQRGAVRLHILHHAAEEEIHGAWMTEELASHGYRISPGTLYPTLHRLEADGLLVSEQ 60 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLGGQS 100 RVVDGRARRVYRAT AGR AL EDRRAL ELAREVLG + Sbjct 61 RVVDGRARRVYRATEAGRRALAEDRRALRELAREVLGDDA 100 >gi|126434037|ref|YP_001069728.1| PadR family transcriptional regulator [Mycobacterium sp. JLS] gi|126233837|gb|ABN97237.1| transcriptional regulator, PadR family [Mycobacterium sp. JLS] Length=128 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 81/108 (75%), Positives = 90/108 (84%), Gaps = 1/108 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 MREF R AVRLHILHHAA+ ++HGAW+T+EL+ HGY++SPGTLYPTLHRLEADGLL S Q Sbjct 1 MREFLRGAVRLHILHHAAEMDIHGAWMTEELAHHGYQISPGTLYPTLHRLEADGLLTSRQ 60 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLG-GQSHTAGNGT 107 RVVDGR RRVYRAT AGR AL EDR AL ELAREVLG GQ A + T Sbjct 61 RVVDGRTRRVYRATKAGRKALAEDRAALAELAREVLGDGQGGEARSAT 108 >gi|240170044|ref|ZP_04748703.1| hypothetical protein MkanA1_12076 [Mycobacterium kansasii ATCC 12478] Length=107 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 86/105 (82%), Positives = 91/105 (87%), Gaps = 0/105 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 MREFQRAA+RLHILHHAA+ EVHGAWLT ELSRHGY+VSPGTLYPTLHRLEADGLLVSEQ Sbjct 1 MREFQRAALRLHILHHAAEGEVHGAWLTGELSRHGYQVSPGTLYPTLHRLEADGLLVSEQ 60 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLGGQSHTAGN 105 +VV GRARRVYRAT AGRAAL DRRAL ELA EVLG + N Sbjct 61 QVVTGRARRVYRATAAGRAALANDRRALRELAHEVLGTEVWAGPN 105 >gi|284045886|ref|YP_003396226.1| PadR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950107|gb|ADB52851.1| transcriptional regulator, PadR-like family [Conexibacter woesei DSM 14684] Length=97 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 62/96 (65%), Positives = 77/96 (81%), Gaps = 0/96 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 MR+F R AV+LHILHHAA+ E+ GAW+++EL+ HG+R+SPGTLYPTLHR+EADG L+S + Sbjct 1 MRQFLRGAVQLHILHHAAEEEIDGAWMSEELAHHGHRISPGTLYPTLHRMEADGWLISHE 60 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVL 96 ++GR RR YRAT GR L E RRAL ELA EVL Sbjct 61 ETIEGRHRRRYRATEEGRRVLAETRRALRELADEVL 96 >gi|89097722|ref|ZP_01170610.1| probable transcriptional regulator, PadR family protein [Bacillus sp. NRRL B-14911] gi|89087581|gb|EAR66694.1| probable transcriptional regulator, PadR family protein [Bacillus sp. NRRL B-14911] Length=102 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 45/95 (48%), Positives = 65/95 (69%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ +++HILHHA + ++GAW+ +EL HGY +S GTLYP LH +E+DGLL+ E Sbjct 6 LRKLFLGFIQIHILHHALEEPIYGAWMLEELKEHGYSISSGTLYPILHGMESDGLLMKEN 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 R VDG+ R+ Y ATP G+ L E R+ EL +E+ Sbjct 66 RNVDGKIRKYYTATPKGQTVLEEARKKAYELFKEI 100 >gi|319652032|ref|ZP_08006153.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317396323|gb|EFV77040.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length=102 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 45/95 (48%), Positives = 65/95 (69%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ +++HILHHA ++ V GAW+ +EL HGY +S GTLYP LH +E+DGLL+ E+ Sbjct 6 LRKLFLGFIQIHILHHAKEHPVFGAWMVEELKEHGYSISSGTLYPILHSMESDGLLLQEK 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 + VDGR R+ Y AT G + L E R+ EL +E+ Sbjct 66 KNVDGRIRKYYTATEKGISVLEEARKKAYELFKEI 100 >gi|11499137|ref|NP_070371.1| hypothetical protein AF1542 [Archaeoglobus fulgidus DSM 4304] gi|2649019|gb|AAB89704.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length=101 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 44/87 (51%), Positives = 63/87 (73%), Gaps = 0/87 (0%) Query 10 RLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQRVVDGRARR 69 R+HIL+HA+ E++G+W+ +EL RHGY +SPGTLYP LH +E +GLL S + VVDGR R+ Sbjct 12 RVHILYHASKEEIYGSWMIEELGRHGYSISPGTLYPILHEMEREGLLRSRKVVVDGRVRK 71 Query 70 VYRATPAGRAALTEDRRALEELAREVL 96 +YR T G L + R ++EL E++ Sbjct 72 MYRITEKGWKLLDDAREKVKELFEEIM 98 >gi|307718308|ref|YP_003873840.1| transcriptional regulator, PadR family [Spirochaeta thermophila DSM 6192] gi|306532033|gb|ADN01567.1| probable transcriptional regulator, PadR family [Spirochaeta thermophila DSM 6192] Length=105 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 51/99 (52%), Positives = 66/99 (67%), Gaps = 0/99 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R F ++LHILHHA+ ++G + +EL RHGY +SPG+LYP LH LEA+G L SE+ Sbjct 7 VRSFFAGFIKLHILHHASQGPIYGLAMIRELKRHGYELSPGSLYPALHGLEAEGFLSSEE 66 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLGGQ 99 R+VDGR RR Y T GR L R + EL REVL G+ Sbjct 67 RLVDGRRRRYYVITEEGRRVLEMARHRIGELVREVLHGE 105 >gi|169830797|ref|YP_001716779.1| PadR-like family transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169637641|gb|ACA59147.1| transcriptional regulator, PadR-like family [Candidatus Desulforudis audaxviator MP104C] Length=101 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 46/96 (48%), Positives = 65/96 (68%), Gaps = 0/96 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+F +++HILHHA+ V+GA+L +EL+ HGY +SPGTLYPTLH++ G L E Sbjct 6 IRDFFLGFIKIHILHHASHEPVYGAFLIEELANHGYNISPGTLYPTLHQMADRGYLKKED 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVL 96 R+V G+ R+ Y TP G AL + R + EL +EVL Sbjct 66 RLVRGKIRKYYSITPKGADALAKARNKIRELVQEVL 101 >gi|228933724|ref|ZP_04096571.1| hypothetical protein bthur0009_21860 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825957|gb|EEM71743.1| hypothetical protein bthur0009_21860 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length=102 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 45/95 (48%), Positives = 62/95 (66%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ +++HILHHA + + GAW+ +EL HGY +SPGTLYP LH +E+DGLL E Sbjct 6 LRKLFLGFIQIHILHHAKEQPIFGAWILEELREHGYTISPGTLYPILHAMESDGLLNKED 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 R V G+ R+ Y AT GR L E R+ EL +E+ Sbjct 66 RNVAGKIRKYYTATEKGRDVLVEARKKAYELFKEI 100 >gi|49477685|ref|YP_036529.1| PadR family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329241|gb|AAT59887.1| probable transcriptional regulator, PadR family [Bacillus thuringiensis serovar konkukian str. 97-27] Length=102 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 45/95 (48%), Positives = 63/95 (67%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ +++HILHHA ++ + GAW+ +EL HGY +SPGTLYP LH +E+DGLL E Sbjct 6 LRKLFLGFIQIHILHHAKEHPIFGAWILEELREHGYTISPGTLYPILHAMESDGLLNKED 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 R V G+ R+ Y AT GR L E R+ EL +E+ Sbjct 66 RNVAGKIRKYYTATEKGRDVLVEARKKAYELFKEI 100 >gi|340357698|ref|ZP_08680308.1| PadR family transcriptional regulator [Sporosarcina newyorkensis 2681] gi|339616895|gb|EGQ21532.1| PadR family transcriptional regulator [Sporosarcina newyorkensis 2681] Length=109 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 43/95 (46%), Positives = 62/95 (66%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ + +HILHHA ++ V G W+ +EL HGY +SPGTLYP LH +E+DGLL+ E+ Sbjct 13 LRKLFLGFIHIHILHHAKEHPVFGVWMLEELREHGYTISPGTLYPILHSMESDGLLMKEE 72 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 R V+G+ R+ Y T G L E R+ EL +E+ Sbjct 73 RKVEGKIRKYYTITKKGDLILIEARKKAYELFKEI 107 >gi|310657843|ref|YP_003935564.1| PadR family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308824621|emb|CBH20659.1| putative transcriptional regulator, PadR family [Clostridium sticklandii] Length=101 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 42/95 (45%), Positives = 59/95 (63%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+F +++HILHHA ++G W+ +EL HGY +SPGTLYP LH +E GLL E Sbjct 6 LRKFFLGFIQIHILHHAKKEPIYGTWMIEELEEHGYDMSPGTLYPILHSMENKGLLTKED 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 R VDG+ R+ Y TP G L + + EL +E+ Sbjct 66 RNVDGKIRKYYSITPLGEDILEQAKAKAYELFKEI 100 >gi|188585767|ref|YP_001917312.1| transcriptional regulator, PadR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350454|gb|ACB84724.1| transcriptional regulator, PadR family [Natranaerobius thermophilus JW/NM-WN-LF] Length=102 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 41/95 (44%), Positives = 60/95 (64%), Gaps = 0/95 (0%) Query 2 REFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQR 61 R+ ++LHILHHA GAW+ +EL HGY +SPGTLYP LH +E DGL++ E+ Sbjct 7 RKLFLGFMQLHILHHAKKEPFFGAWMIEELKYHGYDISPGTLYPILHNMEKDGLIIKEES 66 Query 62 VVDGRARRVYRATPAGRAALTEDRRALEELAREVL 96 +V G+ R+ Y+ T G L E ++ +EL E++ Sbjct 67 LVSGKVRKYYKITQLGEEILEEGKQKAKELFNEII 101 >gi|229916770|ref|YP_002885416.1| PadR family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229468199|gb|ACQ69971.1| transcriptional regulator, PadR-like family [Exiguobacterium sp. AT1b] Length=102 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 45/95 (48%), Positives = 61/95 (65%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ + +HILHHAA++ V+GAW+ EL HGY +S GTLYP LH +E DGLL+ E Sbjct 6 LRKLFLGFIHIHILHHAAEHPVYGAWMVDELREHGYEISAGTLYPILHGMEKDGLLIREN 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 VDG R+ Y T GR+ L E R+ EL +E+ Sbjct 66 ETVDGHVRKNYVTTEKGRSVLAEARQKAYELFKEI 100 >gi|149180416|ref|ZP_01858921.1| hypothetical protein BSG1_05335 [Bacillus sp. SG-1] gi|148852608|gb|EDL66753.1| hypothetical protein BSG1_05335 [Bacillus sp. SG-1] Length=102 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 44/95 (47%), Positives = 61/95 (65%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ + +HILHHA ++ V+G W+ +EL HGY VS GTLYP LH +E+DGLLV E Sbjct 6 LRKLFLGFIHIHILHHAKEHPVYGTWMAEELKEHGYNVSSGTLYPILHSMESDGLLVRED 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 + V+G+ R+ Y T G L E R+ EL RE+ Sbjct 66 KKVEGKIRKYYSTTEKGNEILGEARKKAFELFREI 100 >gi|289522258|ref|ZP_06439112.1| transcriptional regulator, PadR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504094|gb|EFD25258.1| transcriptional regulator, PadR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length=97 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 45/96 (47%), Positives = 59/96 (62%), Gaps = 0/96 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R V++HILHHA+ V+G W+ +EL RHGYR SPGT+YPTLH + DG L E Sbjct 2 LRSLFLGFVKIHILHHASKGPVYGLWVIEELERHGYRFSPGTIYPTLHLMTRDGYLRCES 61 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVL 96 +VV+G+ R+ Y T G L + L EL EVL Sbjct 62 KVVNGKVRKYYTITKKGSDVLNQAIGKLRELVEEVL 97 >gi|317129495|ref|YP_004095777.1| transcriptional regulator PadR family protein [Bacillus cellulosilyticus DSM 2522] gi|315474443|gb|ADU31046.1| transcriptional regulator PadR family protein [Bacillus cellulosilyticus DSM 2522] Length=101 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 40/95 (43%), Positives = 61/95 (65%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ + +HILHHA ++G+W+ +EL HGY++SPG+LYP LH++E D LL E+ Sbjct 6 LRKLFLGFIHIHILHHAKQESIYGSWMLEELREHGYKLSPGSLYPILHKMEEDQLLEKEE 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 ++VDG+ R+ Y T G L E R EL +E+ Sbjct 66 KLVDGKIRKYYHTTVKGNEILQEAREKAYELFKEI 100 >gi|94271314|ref|ZP_01291932.1| Transcriptional regulator PadR-like [delta proteobacterium MLMS-1] gi|93450484|gb|EAT01654.1| Transcriptional regulator PadR-like [delta proteobacterium MLMS-1] Length=118 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 52/93 (56%), Positives = 60/93 (65%), Gaps = 0/93 (0%) Query 2 REFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQR 61 RE + ++HILHHAA V G W+ EL RHGY+VSPGTLYP LHRLE G L+SE Sbjct 14 REILLSFWKIHILHHAAQEPVVGQWMLNELWRHGYQVSPGTLYPLLHRLERLGWLISEVE 73 Query 62 VVDGRARRVYRATPAGRAALTEDRRALEELARE 94 +ARR +RATPAGR L RR L EL E Sbjct 74 PGGPKARRSFRATPAGREVLALIRRQLGELLAE 106 >gi|315231397|ref|YP_004071833.1| transcriptional regulator [Thermococcus barophilus MP] gi|315184425|gb|ADT84610.1| Transcriptional regulator [Thermococcus barophilus MP] Length=102 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 43/87 (50%), Positives = 58/87 (67%), Gaps = 0/87 (0%) Query 11 LHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQRVVDGRARRV 70 LHILHHA+ + G ++ +EL +HGY VSPGT+YP LH++E GLL S V DGR R+ Sbjct 12 LHILHHASKEPITGVFMIEELKKHGYEVSPGTIYPLLHKMEVSGLLKSRWEVRDGRRIRL 71 Query 71 YRATPAGRAALTEDRRALEELAREVLG 97 Y TP G L E ++ ++EL E+LG Sbjct 72 YEITPKGLEVLEEGKKKVKELCNEILG 98 >gi|158320304|ref|YP_001512811.1| PadR-like family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140503|gb|ABW18815.1| transcriptional regulator, PadR-like family [Alkaliphilus oremlandii OhILAs] Length=102 Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 42/95 (45%), Positives = 60/95 (64%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ +++HILHHA +G W+ +ELS HGY +SPGTLYP LH +E++ LL E+ Sbjct 6 LRKLFLGFIQIHILHHAKKEPFYGVWMIEELSEHGYDMSPGTLYPLLHNMESNKLLEKEE 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 R VDG+ R+ Y+ T G L E R EL +E+ Sbjct 66 RNVDGKIRKYYKITNLGSEVLEEARNKAYELFKEI 100 >gi|296034627|gb|ADG85153.1| putative transcriptional regulator [Bacillus sp. SJ1] Length=102 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 44/95 (47%), Positives = 62/95 (66%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ +++HILHHA ++ + GAW+ +EL HGY +SPGTLYP LH +E+ GLL E Sbjct 6 LRKLFLGFIQIHILHHAKEHPIFGAWMLEELREHGYTISPGTLYPILHAMESYGLLNKED 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 R V G+ R+ Y AT GR L E R+ EL +E+ Sbjct 66 RNVAGKIRKYYTATEKGRDVLVEARKKAYELFKEI 100 >gi|94263551|ref|ZP_01287362.1| Transcriptional regulator PadR-like [delta proteobacterium MLMS-1] gi|93456084|gb|EAT06231.1| Transcriptional regulator PadR-like [delta proteobacterium MLMS-1] Length=118 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 52/93 (56%), Positives = 60/93 (65%), Gaps = 0/93 (0%) Query 2 REFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQR 61 RE + ++HILHHAA V G W+ EL RHGY+VSPGTLYP LHRLE G L+SE Sbjct 14 REILLSFWKIHILHHAAQEPVVGQWMLNELRRHGYQVSPGTLYPLLHRLERLGWLISEVE 73 Query 62 VVDGRARRVYRATPAGRAALTEDRRALEELARE 94 +ARR +RATPAGR L RR L EL E Sbjct 74 PGGPKARRSFRATPAGREVLALIRRQLGELLAE 106 >gi|319648256|ref|ZP_08002473.1| hypothetical protein HMPREF1012_03512 [Bacillus sp. BT1B_CT2] gi|317389891|gb|EFV70701.1| hypothetical protein HMPREF1012_03512 [Bacillus sp. BT1B_CT2] Length=111 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 42/95 (45%), Positives = 62/95 (66%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ +++HILHHA+++ + G W+ +EL HGY +S GTLYP LH +EADGLL E+ Sbjct 15 LRKLFLGFIQIHILHHASEHPIFGLWMLEELKEHGYNISAGTLYPILHSMEADGLLRKEE 74 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 + VDG+ R+ Y T G + L E R EL +E+ Sbjct 75 QNVDGKIRKYYSTTEKGASVLKEARLKAYELFKEI 109 >gi|52082385|ref|YP_081176.1| hypothetical protein BL00565 [Bacillus licheniformis ATCC 14580] gi|52787775|ref|YP_093604.1| hypothetical protein BLi04098 [Bacillus licheniformis ATCC 14580] gi|52005596|gb|AAU25538.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52350277|gb|AAU42911.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] Length=102 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 42/95 (45%), Positives = 62/95 (66%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ +++HILHHA+++ + G W+ +EL HGY +S GTLYP LH +EADGLL E+ Sbjct 6 LRKLFLGFIQIHILHHASEHPIFGLWMLEELKEHGYNISAGTLYPILHSMEADGLLRKEE 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 + VDG+ R+ Y T G + L E R EL +E+ Sbjct 66 QNVDGKIRKYYSTTEKGASVLKEARLKAYELFKEI 100 >gi|15613138|ref|NP_241441.1| hypothetical protein BH0575 [Bacillus halodurans C-125] gi|10173189|dbj|BAB04294.1| BH0575 [Bacillus halodurans C-125] Length=102 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 41/95 (44%), Positives = 62/95 (66%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ +++HILHHA ++ + G W+ +EL HGY +S GTLYP LH +EADGLLV ++ Sbjct 6 LRKLFLGFIQIHILHHAKEHPIFGLWMLEELKEHGYDMSAGTLYPILHSMEADGLLVKQE 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 + V+G+ R+ Y T G + L E R EL +E+ Sbjct 66 QKVEGKIRKYYTTTAKGESVLKEARSKAYELFKEI 100 >gi|302386669|ref|YP_003822491.1| transcriptional regulator, PadR-like family [Clostridium saccharolyticum WM1] gi|302197297|gb|ADL04868.1| transcriptional regulator, PadR-like family [Clostridium saccharolyticum WM1] Length=101 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 40/95 (43%), Positives = 61/95 (65%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ A +++HILHHA ++G+W+T+EL HGY++S GTLYP H LE DGLL +E Sbjct 6 LRKLFLAFIQVHILHHAKKEPIYGSWMTEELKHHGYKISAGTLYPIFHNLEKDGLLRAES 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 V+G+ R+ Y T G + L + + + EL E+ Sbjct 66 ITVEGKVRKYYSITEKGTSVLEQAKEKIAELKGEI 100 >gi|268325283|emb|CBH38871.1| conserved hypothetical protein, transcriptional regulator PadR-like family [uncultured archaeon] Length=109 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 45/96 (47%), Positives = 59/96 (62%), Gaps = 0/96 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 MR +R+HILHHA + E+ G + EL RHGY +S GTLYP LH LEA+G L Sbjct 14 MRNIFLGFIRIHILHHANEGEIFGVAIMDELRRHGYSISAGTLYPILHSLEAEGYLTRRN 73 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVL 96 VV+G+ R+ YR T G AL E + ++EL EV+ Sbjct 74 EVVNGKVRKYYRITEKGVNALEEAKPKIKELVDEVI 109 >gi|268325720|emb|CBH39308.1| conserved hypothetical protein, PadR-like family [uncultured archaeon] Length=109 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 45/96 (47%), Positives = 59/96 (62%), Gaps = 0/96 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 MR +R+HILHHA + E+ G + EL RHGY +S GTLYP LH LEA+G L Sbjct 14 MRNIFLGFIRIHILHHANEGEIFGVAIMDELRRHGYSISAGTLYPILHSLEAEGYLTRRN 73 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVL 96 VV+G+ R+ YR T G AL E + ++EL EV+ Sbjct 74 NVVNGKVRKYYRITEKGVNALEEAKPKIKELVDEVI 109 >gi|270308117|ref|YP_003330175.1| transcriptional regulator, PadR-type [Dehalococcoides sp. VS] gi|270154009|gb|ACZ61847.1| transcriptional regulator, PadR-type [Dehalococcoides sp. VS] Length=99 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 45/95 (48%), Positives = 60/95 (64%), Gaps = 0/95 (0%) Query 2 REFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQR 61 REF +R+H+L+HA + GA + +EL RHGY ++ GTLYP LHRL+ +G L S + Sbjct 4 REFFLGFIRIHVLYHAQTEPIFGAEIARELGRHGYTITAGTLYPLLHRLQGEGYLESFPK 63 Query 62 VVDGRARRVYRATPAGRAALTEDRRALEELAREVL 96 V G+ RR YR TP G L E R+ + EL EVL Sbjct 64 VEQGKQRRYYRTTPKGSEMLNECRKQIRELVDEVL 98 >gi|212223155|ref|YP_002306391.1| protein TON_0011 [Thermococcus onnurineus NA1] gi|212008112|gb|ACJ15494.1| hypothetical protein TON_0011 [Thermococcus onnurineus NA1] Length=96 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 46/91 (51%), Positives = 59/91 (65%), Gaps = 0/91 (0%) Query 6 RAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQRVVDG 65 R + LH+LHHA + G+++ +EL RHGY +SPGT+YP LH +E GLL S V DG Sbjct 4 RDFLTLHVLHHAEREPITGSFMMEELKRHGYHISPGTIYPLLHGMEESGLLKSHWEVRDG 63 Query 66 RARRVYRATPAGRAALTEDRRALEELAREVL 96 R RVY TP G+ AL E R + EL RE+L Sbjct 64 RRVRVYEITPKGKKALEEGRERVRELCRELL 94 >gi|182417758|ref|ZP_02949076.1| transcriptional regulator, PadR family [Clostridium butyricum 5521] gi|237668610|ref|ZP_04528594.1| transcriptional regulator, PadR family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378482|gb|EDT76013.1| transcriptional regulator, PadR family [Clostridium butyricum 5521] gi|237656958|gb|EEP54514.1| transcriptional regulator, PadR family [Clostridium butyricum E4 str. BoNT E BL5262] Length=101 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 43/95 (46%), Positives = 59/95 (63%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 MR+ + +HILHHA ++G W+ +EL HGY VSPGTLYP L + +GLL E+ Sbjct 6 MRKIVNGLIYIHILHHAEIEPIYGVWMLEELEHHGYHVSPGTLYPILKSMVEEGLLEKEE 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 R V G+ R+ Y+AT G L E + L+EL R+V Sbjct 66 RNVGGKIRKYYKATDEGIKILKELKENLKELTRDV 100 >gi|183219793|ref|YP_001837789.1| PadR family transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909928|ref|YP_001961483.1| transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774604|gb|ABZ92905.1| Transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778215|gb|ABZ96513.1| Putative transcriptional regulator, PadR family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length=99 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 40/97 (42%), Positives = 59/97 (61%), Gaps = 0/97 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 + EF + +++HILHH E++G W+ +EL HGY++SPG+LYP L LE GL+ S Sbjct 3 INEFFSSFIKIHILHHCLKEEIYGVWMIEELREHGYKISPGSLYPLLKHLEEKGLIRSRV 62 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLG 97 + R+ YR TP G+ LT + L+EL E+L Sbjct 63 EQLGKVKRKFYRITPRGKKELTSAKIKLKELIGEILN 99 >gi|73748615|ref|YP_307854.1| hypothetical protein cbdb_A784 [Dehalococcoides sp. CBDB1] gi|289432640|ref|YP_003462513.1| PadR family transcriptional regulator [Dehalococcoides sp. GT] gi|73660331|emb|CAI82938.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1] gi|288946360|gb|ADC74057.1| transcriptional regulator, PadR-like family [Dehalococcoides sp. GT] Length=99 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 46/96 (48%), Positives = 61/96 (64%), Gaps = 0/96 (0%) Query 2 REFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQR 61 REF +R+HIL+HA + + GA + +EL RH Y ++ GTLYP LHRL+A+G L S R Sbjct 4 REFFLGFIRIHILYHAQNEPIFGAEIARELGRHCYTITAGTLYPLLHRLQAEGYLESFPR 63 Query 62 VVDGRARRVYRATPAGRAALTEDRRALEELAREVLG 97 V G+ R+ YR T G L E R+ + EL EVLG Sbjct 64 VEQGKQRKYYRTTLKGSEMLNECRKQIRELVDEVLG 99 >gi|220923044|ref|YP_002498346.1| transcriptional regulator, PadR-like family [Methylobacterium nodulans ORS 2060] gi|219947651|gb|ACL58043.1| transcriptional regulator, PadR-like family [Methylobacterium nodulans ORS 2060] Length=103 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/92 (52%), Positives = 60/92 (66%), Gaps = 0/92 (0%) Query 9 VRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQRVVDGRAR 68 +RLHILHHAA+++++G W+ +EL RHGY++S GTLYP LH +E G L S R Sbjct 11 IRLHILHHAAESDLYGQWMIEELGRHGYKLSAGTLYPMLHAMEQRGYLTSRLERAGRSQR 70 Query 69 RVYRATPAGRAALTEDRRALEELAREVLGGQS 100 RVYRATP G AL R + EL EVL G + Sbjct 71 RVYRATPLGCEALAMARERMRELFHEVLPGPT 102 >gi|343178737|emb|CCC57825.1| transcriptional regulator, PadR family [Caloramator australicus RC3] Length=102 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 37/96 (39%), Positives = 60/96 (63%), Gaps = 0/96 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ +++HIL+HA G+W+ +EL HGY + PGTLYP LH +E +GLLV E Sbjct 6 LRKLFLGFIQVHILYHAYKEPFFGSWMMEELKEHGYNIGPGTLYPILHSMEKEGLLVRED 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVL 96 ++++G+ R+ Y T G AL E ++ ++L E+ Sbjct 66 KLINGKIRKYYSITKEGIEALKEAKKRAKQLYEEIF 101 >gi|33359325|ref|NP_877788.1| hypothetical protein PH0718.1n [Pyrococcus horikoshii OT3] Length=99 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 44/87 (51%), Positives = 58/87 (67%), Gaps = 0/87 (0%) Query 11 LHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQRVVDGRARRV 70 LHILHHA+ V GA++ +EL RHGY+VSPGT+YP L ++E GLL S VV+GR R+ Sbjct 12 LHILHHASKEPVTGAFIMEELKRHGYKVSPGTIYPLLRKMEDLGLLKSRWDVVNGRRVRL 71 Query 71 YRATPAGRAALTEDRRALEELAREVLG 97 Y T G L E + + EL +E+LG Sbjct 72 YEITEKGLEVLKEGKEKVRELCKEILG 98 >gi|242399649|ref|YP_002995074.1| Transcriptional regulator, padR-like family [Thermococcus sibiricus MM 739] gi|242266043|gb|ACS90725.1| Transcriptional regulator, padR-like family [Thermococcus sibiricus MM 739] Length=101 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 42/97 (44%), Positives = 59/97 (61%), Gaps = 0/97 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 MR + LHILHHA+ + G ++ +EL HGY+VSPGT+YP L +E GLL S Sbjct 2 MRRIILGFMGLHILHHASKEAITGTFMMKELENHGYKVSPGTIYPLLQNMEKLGLLKSTW 61 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREVLG 97 ++ DGR R Y+ T G L E ++ ++EL E+LG Sbjct 62 KIKDGRRIRTYQITQEGIKVLEESKKKVKELCMEILG 98 >gi|150389377|ref|YP_001319426.1| PadR-like family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949239|gb|ABR47767.1| transcriptional regulator, PadR-like family [Alkaliphilus metalliredigens QYMF] Length=102 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 40/95 (43%), Positives = 57/95 (60%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ +++HILHHA +G W+ +EL HGY +SPGTLYP LH +E+ GLL E+ Sbjct 6 LRKLFLGFIQIHILHHAKKEPFYGVWMMEELKEHGYDMSPGTLYPLLHSMESKGLLRKEE 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 R + G+ R+ Y T G L E R EL +E+ Sbjct 66 RTISGKIRKYYSITELGDEVLQEARGKAYELFKEI 100 >gi|254521458|ref|ZP_05133513.1| transcriptional regulator, PadR family, putative [Stenotrophomonas sp. SKA14] gi|330824207|ref|YP_004387510.1| PadR-like family transcriptional regulator [Alicycliphilus denitrificans K601] gi|219719049|gb|EED37574.1| transcriptional regulator, PadR family, putative [Stenotrophomonas sp. SKA14] gi|329309579|gb|AEB83994.1| transcriptional regulator, PadR-like family [Alicycliphilus denitrificans K601] gi|334833706|gb|EGM12755.1| PadR-like family transcriptional regulator [Pseudomonas aeruginosa 138244] gi|334842731|gb|EGM21333.1| PadR-like family transcriptional regulator [Pseudomonas aeruginosa 152504] Length=100 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 41/88 (47%), Positives = 57/88 (65%), Gaps = 0/88 (0%) Query 9 VRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQRVVDGRAR 68 +RLH+LHHAA+ E++G W+ EL+ HGYR+SPGTLYP LH++E DG LVS Q R Sbjct 11 IRLHVLHHAAEQEIYGQWMIDELAHHGYRLSPGTLYPMLHKMERDGYLVSRQEREGRTVR 70 Query 69 RVYRATPAGRAALTEDRRALEELAREVL 96 ++Y TP G+ L + + E E + Sbjct 71 KLYTITPKGKEGLALAKDRIREFTGEAM 98 >gi|2665590|gb|AAB88443.1| SQ1_IV [Rhodococcus erythropolis] Length=59 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 42/59 (72%), Positives = 51/59 (87%), Gaps = 1/59 (1%) Query 1 MREFQR-AAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVS 58 M+EFQR AAVRLHILHH A ++GAW+++EL+ HGY++SPGTLYPTLHRLE DGLL S Sbjct 1 MKEFQRGAAVRLHILHHRAQEPIYGAWMSEELAHHGYKISPGTLYPTLHRLEVDGLLES 59 >gi|57641589|ref|YP_184067.1| ParR family transcriptional regulator [Thermococcus kodakarensis KOD1] gi|57159913|dbj|BAD85843.1| transcription regulator, PadR-like family [Thermococcus kodakarensis KOD1] Length=99 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 58/86 (68%), Gaps = 0/86 (0%) Query 11 LHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQRVVDGRARRV 70 +HILHHA+ EV G+++ +EL RHGY VSPGT+YP LHR+E GLL S+ V +G+ R+ Sbjct 12 IHILHHASKGEVTGSFMMEELKRHGYSVSPGTIYPLLHRMEELGLLESQWGVKNGKRVRL 71 Query 71 YRATPAGRAALTEDRRALEELAREVL 96 YR TP G L + + EL E+L Sbjct 72 YRTTPEGEELLKRAKEKVRELCSELL 97 >gi|23100732|ref|NP_694199.1| hypothetical protein OB3277 [Oceanobacillus iheyensis HTE831] gi|22778966|dbj|BAC15233.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length=102 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 42/95 (45%), Positives = 59/95 (63%), Gaps = 0/95 (0%) Query 1 MREFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQ 60 +R+ + +HILHHA ++ V G W+ +EL HGY +S GTLYP LH +E DGLL E+ Sbjct 6 LRKLFLGFIHIHILHHANEHPVFGLWMLEELKEHGYSISAGTLYPILHSMEKDGLLHKEE 65 Query 61 RVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95 + V+G+ R+ Y AT G L E R EL +E+ Sbjct 66 QNVEGKIRKYYTATDKGVEILQEAREKAYELFKEI 100 >gi|240103501|ref|YP_002959810.1| Transcription regulator, PadR-like family [Thermococcus gammatolerans EJ3] gi|239911055|gb|ACS33946.1| Transcription regulator, PadR-like family [Thermococcus gammatolerans EJ3] Length=99 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 43/87 (50%), Positives = 56/87 (65%), Gaps = 0/87 (0%) Query 11 LHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQRVVDGRARRV 70 +H+LHHA+ V G ++ EL +HGY VSPGT+YP LHR+E GLL S V +G+ RV Sbjct 12 IHVLHHASREGVTGKFMMDELRKHGYNVSPGTIYPLLHRMEEMGLLKSRTEVRNGKRVRV 71 Query 71 YRATPAGRAALTEDRRALEELAREVLG 97 Y TP G L E R + EL +E+LG Sbjct 72 YTTTPKGEKLLEEARNKIRELCKELLG 98 >gi|147669374|ref|YP_001214192.1| PadR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270322|gb|ABQ17314.1| transcriptional regulator, PadR family [Dehalococcoides sp. BAV1] Length=99 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 45/95 (48%), Positives = 60/95 (64%), Gaps = 0/95 (0%) Query 2 REFQRAAVRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQR 61 REF +R+HIL+HA + + GA + +EL RH Y ++ GTLYP LHRL+A+G L S R Sbjct 4 REFFLGFIRIHILYHAQNEPIFGAEIARELGRHCYTITAGTLYPLLHRLQAEGYLESFPR 63 Query 62 VVDGRARRVYRATPAGRAALTEDRRALEELAREVL 96 V G+ R+ YR T G L E R+ + EL EVL Sbjct 64 VEQGKQRKYYRTTLKGSEMLNECRKQIRELVDEVL 98 >gi|160901704|ref|YP_001567285.1| PadR-like family transcriptional regulator [Petrotoga mobilis SJ95] gi|160359348|gb|ABX30962.1| transcriptional regulator, PadR-like family [Petrotoga mobilis SJ95] Length=92 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 36/88 (41%), Positives = 56/88 (64%), Gaps = 0/88 (0%) Query 9 VRLHILHHAADNEVHGAWLTQELSRHGYRVSPGTLYPTLHRLEADGLLVSEQRVVDGRAR 68 +++HILHH+ ++G+W+ EL RHGY +SPGTLYP LH++E + LL +V+G+ R Sbjct 5 IQIHILHHSQKAPIYGSWMIYELKRHGYNISPGTLYPLLHKMEKENLLTKRTEIVEGKKR 64 Query 69 RVYRATPAGRAALTEDRRALEELAREVL 96 Y T G L E + ++EL E++ Sbjct 65 IYYSITSQGENLLKELKAKVKELFHEII 92 Lambda K H 0.319 0.133 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130484177216 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40