BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3501c
Length=254
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610637|ref|NP_218018.1| integral membrane protein YrbE4a [M... 491 3e-137
gi|118619254|ref|YP_907586.1| membrane protein YrbE4A [Mycobacte... 487 7e-136
gi|240170056|ref|ZP_04748715.1| membrane protein YrbE4A [Mycobac... 482 2e-134
gi|41406660|ref|NP_959496.1| hypothetical protein MAP0562 [Mycob... 473 1e-131
gi|342862240|ref|ZP_08718882.1| hypothetical protein MCOL_25241 ... 472 2e-131
gi|296166535|ref|ZP_06848966.1| membrane protein YrbE4A [Mycobac... 464 5e-129
gi|15843113|ref|NP_338150.1| hypothetical protein MT3605 [Mycoba... 461 7e-128
gi|183984957|ref|YP_001853248.1| membrane protein YrbE4A [Mycoba... 455 3e-126
gi|118470037|ref|YP_890128.1| hypothetical protein MSMEG_5902 [M... 454 7e-126
gi|333992272|ref|YP_004524886.1| hypothetical protein JDM601_363... 449 2e-124
gi|126437566|ref|YP_001073257.1| hypothetical protein Mjls_5002 ... 447 8e-124
gi|108801582|ref|YP_641779.1| hypothetical protein Mmcs_4619 [My... 447 1e-123
gi|254822745|ref|ZP_05227746.1| hypothetical protein MintA_22639... 445 3e-123
gi|169631233|ref|YP_001704882.1| hypothetical protein MAB_4155c ... 430 8e-119
gi|145222146|ref|YP_001132824.1| hypothetical protein Mflv_1554 ... 427 9e-118
gi|120406152|ref|YP_955981.1| hypothetical protein Mvan_5204 [My... 426 1e-117
gi|315442585|ref|YP_004075464.1| ABC transporter involved in res... 425 4e-117
gi|226364205|ref|YP_002781987.1| YrbE family protein [Rhodococcu... 372 3e-101
gi|54022502|ref|YP_116744.1| putative YrbE family protein [Nocar... 371 7e-101
gi|111021668|ref|YP_704640.1| hypothetical protein RHA1_ro04696 ... 370 8e-101
gi|333918571|ref|YP_004492152.1| putative YrbE family protein [A... 367 7e-100
gi|226304447|ref|YP_002764405.1| YrbE family protein [Rhodococcu... 367 1e-99
gi|312138208|ref|YP_004005544.1| integral membrane protein yrbe2... 362 3e-98
gi|325674886|ref|ZP_08154573.1| membrane protein YrbE4A [Rhodoco... 361 6e-98
gi|183984680|ref|YP_001852971.1| hypothetical protein MMAR_4712 ... 360 8e-98
gi|240170399|ref|ZP_04749058.1| hypothetical protein MkanA1_1389... 359 2e-97
gi|118470268|ref|YP_889052.1| hypothetical protein MSMEG_4796 [M... 359 2e-97
gi|342861420|ref|ZP_08718068.1| hypothetical protein MCOL_21151 ... 357 9e-97
gi|126436263|ref|YP_001071954.1| hypothetical protein Mjls_3686 ... 357 9e-97
gi|108800639|ref|YP_640836.1| hypothetical protein Mmcs_3673 [My... 357 1e-96
gi|342860430|ref|ZP_08717081.1| hypothetical protein MCOL_16186 ... 356 2e-96
gi|118469944|ref|YP_887173.1| hypothetical protein MSMEG_2853 [M... 356 2e-96
gi|41406855|ref|NP_959691.1| hypothetical protein MAP0757 [Mycob... 355 5e-96
gi|336461223|gb|EGO40099.1| ABC-type transport system involved i... 354 6e-96
gi|254773835|ref|ZP_05215351.1| TrnB1 protein [Mycobacterium avi... 354 6e-96
gi|118463749|ref|YP_880207.1| TrnB1 protein [Mycobacterium avium... 354 7e-96
gi|108797253|ref|YP_637450.1| hypothetical protein Mmcs_0273 [My... 353 1e-95
gi|145223093|ref|YP_001133771.1| hypothetical protein Mflv_2506 ... 353 2e-95
gi|120403833|ref|YP_953662.1| hypothetical protein Mvan_2849 [My... 353 2e-95
gi|315443550|ref|YP_004076429.1| ABC transporter involved in res... 353 2e-95
gi|229492731|ref|ZP_04386532.1| conserved hypothetical protein [... 351 6e-95
gi|226306858|ref|YP_002766818.1| YrbE family protein [Rhodococcu... 351 7e-95
gi|226361938|ref|YP_002779716.1| YrbE family protein [Rhodococcu... 350 2e-94
gi|319948072|ref|ZP_08022243.1| hypothetical protein ES5_02019 [... 349 2e-94
gi|343926111|ref|ZP_08765623.1| putative YrbE family protein [Go... 345 4e-93
gi|262203811|ref|YP_003275019.1| hypothetical protein Gbro_3952 ... 345 4e-93
gi|145225118|ref|YP_001135796.1| hypothetical protein Mflv_4540 ... 345 4e-93
gi|315445485|ref|YP_004078364.1| ABC transporter involved in res... 344 9e-93
gi|333989350|ref|YP_004521964.1| hypothetical protein JDM601_071... 341 6e-92
gi|254818326|ref|ZP_05223327.1| hypothetical protein MintA_00280... 341 7e-92
>gi|15610637|ref|NP_218018.1| integral membrane protein YrbE4a [Mycobacterium tuberculosis
H37Rv]
gi|31794677|ref|NP_857170.1| integral membrane protein YrbE4a [Mycobacterium bovis AF2122/97]
gi|121639420|ref|YP_979644.1| integral membrane protein YrbE4a [Mycobacterium bovis BCG str.
Pasteur 1173P2]
79 more sequence titles
Length=254
Score = 491 bits (1265), Expect = 3e-137, Method: Compositional matrix adjust.
Identities = 253/254 (99%), Positives = 254/254 (100%), Gaps = 0/254 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
+IQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV
Sbjct 1 MIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE
Sbjct 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING
Sbjct 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI
Sbjct 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
Query 241 NVVMTAIGVRISAQ 254
NVVMTAIGVRISAQ
Sbjct 241 NVVMTAIGVRISAQ 254
>gi|118619254|ref|YP_907586.1| membrane protein YrbE4A [Mycobacterium ulcerans Agy99]
gi|118571364|gb|ABL06115.1| conserved membrane protein YrbE4A [Mycobacterium ulcerans Agy99]
Length=279
Score = 487 bits (1254), Expect = 7e-136, Method: Compositional matrix adjust.
Identities = 251/254 (99%), Positives = 254/254 (100%), Gaps = 0/254 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
LIQQLAVPARAVGGFFEMS+DTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV
Sbjct 26 LIQQLAVPARAVGGFFEMSIDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 85
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE
Sbjct 86 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 145
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAMRVLGIDPIQRLVVPRVLAST+VALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING
Sbjct 146 IDAMRVLGIDPIQRLVVPRVLASTVVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 205
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI
Sbjct 206 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 265
Query 241 NVVMTAIGVRISAQ 254
NVVMTAIGVRISA+
Sbjct 266 NVVMTAIGVRISAR 279
>gi|240170056|ref|ZP_04748715.1| membrane protein YrbE4A [Mycobacterium kansasii ATCC 12478]
Length=254
Score = 482 bits (1241), Expect = 2e-134, Method: Compositional matrix adjust.
Identities = 247/254 (98%), Positives = 251/254 (99%), Gaps = 0/254 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
+IQQLAVPARAVGGFFEMS+DT RAA RRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV
Sbjct 1 MIQQLAVPARAVGGFFEMSIDTGRAALRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE
Sbjct 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGY FSVFLQGVNPGAFING
Sbjct 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYVFSVFLQGVNPGAFING 180
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
LTVLTGLRELILAE+KALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI
Sbjct 181 LTVLTGLRELILAEVKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
Query 241 NVVMTAIGVRISAQ 254
NVVMTAIGVRISA+
Sbjct 241 NVVMTAIGVRISAK 254
>gi|41406660|ref|NP_959496.1| hypothetical protein MAP0562 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118465663|ref|YP_879935.1| hypothetical protein MAV_0655 [Mycobacterium avium 104]
gi|254773611|ref|ZP_05215127.1| hypothetical protein MaviaA2_02900 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395009|gb|AAS02879.1| hypothetical protein MAP_0562 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118166950|gb|ABK67847.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336458448|gb|EGO37422.1| ABC-type transport system involved in resistance to organic solvents,
permease component [Mycobacterium avium subsp. paratuberculosis
S397]
Length=254
Score = 473 bits (1216), Expect = 1e-131, Method: Compositional matrix adjust.
Identities = 240/254 (95%), Positives = 249/254 (99%), Gaps = 0/254 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
+I+QLAVPARAVGGFFEM +DT RAAFRRPFQF EFLDQTWM+ARVSLVPTLLVSIPFTV
Sbjct 1 MIEQLAVPARAVGGFFEMMIDTGRAAFRRPFQFGEFLDQTWMIARVSLVPTLLVSIPFTV 60
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE
Sbjct 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAMRVLGIDPI RLVVPRVLAST+VALLLNGLVCAIGLSGGY FSVFLQGVNPGAFING
Sbjct 121 IDAMRVLGIDPIHRLVVPRVLASTVVALLLNGLVCAIGLSGGYVFSVFLQGVNPGAFING 180
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
LTVLTGLREL+LAE+KALLFGVMAG+VGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI
Sbjct 181 LTVLTGLRELVLAEVKALLFGVMAGMVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
Query 241 NVVMTAIGVRISAQ 254
NVVMTAIGVRISA+
Sbjct 241 NVVMTAIGVRISAK 254
>gi|342862240|ref|ZP_08718882.1| hypothetical protein MCOL_25241 [Mycobacterium colombiense CECT
3035]
gi|342130318|gb|EGT83638.1| hypothetical protein MCOL_25241 [Mycobacterium colombiense CECT
3035]
Length=254
Score = 472 bits (1215), Expect = 2e-131, Method: Compositional matrix adjust.
Identities = 240/252 (96%), Positives = 248/252 (99%), Gaps = 0/252 (0%)
Query 3 QQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLV 62
+QLAVPARAVGGFFEM +DT RAAFRRPFQF EFLDQTWM+ARVSLVPTLLVSIPFTVLV
Sbjct 3 EQLAVPARAVGGFFEMMLDTGRAAFRRPFQFGEFLDQTWMIARVSLVPTLLVSIPFTVLV 62
Query 63 AFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID 122
AFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID
Sbjct 63 AFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID 122
Query 123 AMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLT 182
AMRVLGIDPIQRLVVPRVLAST+VALLLNGLVCAIGLSGGY FSVFLQGVNPGAFINGLT
Sbjct 123 AMRVLGIDPIQRLVVPRVLASTVVALLLNGLVCAIGLSGGYVFSVFLQGVNPGAFINGLT 182
Query 183 VLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINV 242
VLTGLREL+LAE+KALLFGVMAG+VGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINV
Sbjct 183 VLTGLRELVLAEVKALLFGVMAGMVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINV 242
Query 243 VMTAIGVRISAQ 254
VMTAIGVRISA+
Sbjct 243 VMTAIGVRISAK 254
>gi|296166535|ref|ZP_06848966.1| membrane protein YrbE4A [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898147|gb|EFG77722.1| membrane protein YrbE4A [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=254
Score = 464 bits (1195), Expect = 5e-129, Method: Compositional matrix adjust.
Identities = 236/252 (94%), Positives = 245/252 (98%), Gaps = 0/252 (0%)
Query 3 QQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLV 62
+QLAVPARAVGGFFEM +DT RA FRRPFQ EFL+QTWM+ARVSLVPTLLVSIPFTVLV
Sbjct 3 EQLAVPARAVGGFFEMMIDTGRATFRRPFQLGEFLEQTWMIARVSLVPTLLVSIPFTVLV 62
Query 63 AFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID 122
AFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID
Sbjct 63 AFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID 122
Query 123 AMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLT 182
AMRVLGIDP+ RLVVPRVLAST+VALLLNGLVCAIGLSGGY FSVFLQGVNPGAFINGLT
Sbjct 123 AMRVLGIDPVHRLVVPRVLASTVVALLLNGLVCAIGLSGGYVFSVFLQGVNPGAFINGLT 182
Query 183 VLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINV 242
VLTGLREL+LAE+KALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINV
Sbjct 183 VLTGLRELVLAEVKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINV 242
Query 243 VMTAIGVRISAQ 254
VMTAIGVRISA+
Sbjct 243 VMTAIGVRISAK 254
>gi|15843113|ref|NP_338150.1| hypothetical protein MT3605 [Mycobacterium tuberculosis CDC1551]
gi|13883459|gb|AAK47964.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
Length=237
Score = 461 bits (1185), Expect = 7e-128, Method: Compositional matrix adjust.
Identities = 237/237 (100%), Positives = 237/237 (100%), Gaps = 0/237 (0%)
Query 18 MSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAAD 77
MSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAAD
Sbjct 1 MSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAAD 60
Query 78 LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV 137
LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV
Sbjct 61 LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV 120
Query 138 PRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRELILAEIKA 197
PRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRELILAEIKA
Sbjct 121 PRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRELILAEIKA 180
Query 198 LLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRISAQ 254
LLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRISAQ
Sbjct 181 LLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRISAQ 237
>gi|183984957|ref|YP_001853248.1| membrane protein YrbE4A [Mycobacterium marinum M]
gi|183178283|gb|ACC43393.1| conserved membrane protein YrbE4A [Mycobacterium marinum M]
Length=237
Score = 455 bits (1170), Expect = 3e-126, Method: Compositional matrix adjust.
Identities = 234/237 (99%), Positives = 237/237 (100%), Gaps = 0/237 (0%)
Query 18 MSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAAD 77
MS+DTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAAD
Sbjct 1 MSIDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAAD 60
Query 78 LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV 137
LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV
Sbjct 61 LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV 120
Query 138 PRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRELILAEIKA 197
PRVLAST+VALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRELILAEIKA
Sbjct 121 PRVLASTVVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRELILAEIKA 180
Query 198 LLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRISAQ 254
LLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRISA+
Sbjct 181 LLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRISAR 237
>gi|118470037|ref|YP_890128.1| hypothetical protein MSMEG_5902 [Mycobacterium smegmatis str.
MC2 155]
gi|118171324|gb|ABK72220.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=254
Score = 454 bits (1167), Expect = 7e-126, Method: Compositional matrix adjust.
Identities = 230/251 (92%), Positives = 242/251 (97%), Gaps = 0/251 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
+I+QLAVPARAVGGF EMS+DT FRRPFQ +EFLDQTWM+ARVSLVPTLLV+IPFTV
Sbjct 1 MIEQLAVPARAVGGFVEMSLDTFAKIFRRPFQLKEFLDQTWMIARVSLVPTLLVAIPFTV 60
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE
Sbjct 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAMRVLGIDPIQRLVVPRVLAST VALLLNGLVCAIGL+GGY FSVFLQGVNPGAFING
Sbjct 121 IDAMRVLGIDPIQRLVVPRVLASTFVALLLNGLVCAIGLAGGYVFSVFLQGVNPGAFING 180
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
LTVLTGL EL+LAEIKALLFGV+AGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI
Sbjct 181 LTVLTGLGELVLAEIKALLFGVVAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
Query 241 NVVMTAIGVRI 251
NV+MTA+GVR+
Sbjct 241 NVIMTAVGVRV 251
>gi|333992272|ref|YP_004524886.1| hypothetical protein JDM601_3632 [Mycobacterium sp. JDM601]
gi|333488240|gb|AEF37632.1| membrane protein YrbE4A [Mycobacterium sp. JDM601]
Length=254
Score = 449 bits (1154), Expect = 2e-124, Method: Compositional matrix adjust.
Identities = 227/251 (91%), Positives = 238/251 (95%), Gaps = 0/251 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
+I+QL VPARAVGGF EMS+DT RA FRRPFQ+REFLDQTWM+ARVSLVPTLLV+IPFTV
Sbjct 1 MIEQLTVPARAVGGFVEMSIDTFRAMFRRPFQYREFLDQTWMIARVSLVPTLLVAIPFTV 60
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE
Sbjct 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAMRVLGIDPIQRLVVPR LAST VALLLNGLVCAIGL GGY FSVFLQGVNPGAFING
Sbjct 121 IDAMRVLGIDPIQRLVVPRALASTFVALLLNGLVCAIGLVGGYVFSVFLQGVNPGAFING 180
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
LTVLTGL EL++AEIKALLFG AGL+GCYRGLT KGGP+GVGNAVNETVVYAFICLFVI
Sbjct 181 LTVLTGLGELVMAEIKALLFGTAAGLIGCYRGLTAKGGPQGVGNAVNETVVYAFICLFVI 240
Query 241 NVVMTAIGVRI 251
NVVMTAI VR+
Sbjct 241 NVVMTAISVRV 251
>gi|126437566|ref|YP_001073257.1| hypothetical protein Mjls_5002 [Mycobacterium sp. JLS]
gi|126237366|gb|ABO00767.1| protein of unknown function DUF140 [Mycobacterium sp. JLS]
Length=254
Score = 447 bits (1149), Expect = 8e-124, Method: Compositional matrix adjust.
Identities = 227/251 (91%), Positives = 241/251 (97%), Gaps = 0/251 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
+I+QLA PARAVGGF +MS+DT FRRPFQFREFLDQTWM+ARVSL+PTLLV+IPFTV
Sbjct 1 MIEQLAAPARAVGGFVDMSIDTFVKMFRRPFQFREFLDQTWMIARVSLIPTLLVAIPFTV 60
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE
Sbjct 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAMRVLGIDPIQRLVVPRVLAST VALLLNGLVCAIGL+GGY FSVFLQGVNPGAFING
Sbjct 121 IDAMRVLGIDPIQRLVVPRVLASTFVALLLNGLVCAIGLAGGYVFSVFLQGVNPGAFING 180
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
LTVLTGL EL+LAEIKALLFGV+AGLVGCYRGLTV+GGPKGVG AVNETVVYAFICLFVI
Sbjct 181 LTVLTGLGELVLAEIKALLFGVVAGLVGCYRGLTVQGGPKGVGIAVNETVVYAFICLFVI 240
Query 241 NVVMTAIGVRI 251
NV+MTA+GVR+
Sbjct 241 NVIMTAVGVRV 251
>gi|108801582|ref|YP_641779.1| hypothetical protein Mmcs_4619 [Mycobacterium sp. MCS]
gi|119870736|ref|YP_940688.1| hypothetical protein Mkms_4707 [Mycobacterium sp. KMS]
gi|108772001|gb|ABG10723.1| protein of unknown function DUF140 [Mycobacterium sp. MCS]
gi|119696825|gb|ABL93898.1| protein of unknown function DUF140 [Mycobacterium sp. KMS]
Length=254
Score = 447 bits (1149), Expect = 1e-123, Method: Compositional matrix adjust.
Identities = 227/249 (92%), Positives = 239/249 (96%), Gaps = 0/249 (0%)
Query 3 QQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLV 62
+QLA PARAVGGF EMS+DT FRRPFQFREFLDQTWM+ARVSL+PTLLV+IPFTVLV
Sbjct 3 EQLAAPARAVGGFVEMSIDTFVKTFRRPFQFREFLDQTWMIARVSLIPTLLVAIPFTVLV 62
Query 63 AFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID 122
AFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID
Sbjct 63 AFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID 122
Query 123 AMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLT 182
AMRVLGIDPIQRLVVPRVLAST VALLLNGLVCAIGL+GGY FSVFLQGVNPGAFINGLT
Sbjct 123 AMRVLGIDPIQRLVVPRVLASTFVALLLNGLVCAIGLAGGYVFSVFLQGVNPGAFINGLT 182
Query 183 VLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINV 242
VLTGL EL+LAEIKALLFGV+AGLVGCYRGLTV+GGPKGVG AVNETVVYAFICLFVINV
Sbjct 183 VLTGLGELVLAEIKALLFGVVAGLVGCYRGLTVQGGPKGVGIAVNETVVYAFICLFVINV 242
Query 243 VMTAIGVRI 251
+MTA+GVR+
Sbjct 243 IMTAVGVRV 251
>gi|254822745|ref|ZP_05227746.1| hypothetical protein MintA_22639 [Mycobacterium intracellulare
ATCC 13950]
Length=237
Score = 445 bits (1144), Expect = 3e-123, Method: Compositional matrix adjust.
Identities = 227/237 (96%), Positives = 233/237 (99%), Gaps = 0/237 (0%)
Query 18 MSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAAD 77
M MDT RAAFRRPFQF EFLDQTWM+ARVSLVPTLLVSIPFTVLVAFTLNILLREIGAAD
Sbjct 1 MMMDTGRAAFRRPFQFGEFLDQTWMIARVSLVPTLLVSIPFTVLVAFTLNILLREIGAAD 60
Query 78 LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV 137
LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV
Sbjct 61 LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV 120
Query 138 PRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRELILAEIKA 197
PRVLAST+VALLLNGLVCAIGLSGGY FSVFLQGVNPGAFINGLTVLTGLREL+LAE+KA
Sbjct 121 PRVLASTVVALLLNGLVCAIGLSGGYVFSVFLQGVNPGAFINGLTVLTGLRELVLAEVKA 180
Query 198 LLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRISAQ 254
LLFGVMAG+VGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRISA+
Sbjct 181 LLFGVMAGMVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRISAK 237
>gi|169631233|ref|YP_001704882.1| hypothetical protein MAB_4155c [Mycobacterium abscessus ATCC
19977]
gi|169243200|emb|CAM64228.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=255
Score = 430 bits (1106), Expect = 8e-119, Method: Compositional matrix adjust.
Identities = 218/249 (88%), Positives = 233/249 (94%), Gaps = 0/249 (0%)
Query 3 QQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLV 62
QQLA PARAVGGF MS+ T R FRRPFQ +EFLDQTW +ARVSL+PTLLV+IPFTVLV
Sbjct 3 QQLAAPARAVGGFVSMSLATFRNIFRRPFQGQEFLDQTWFIARVSLLPTLLVAIPFTVLV 62
Query 63 AFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID 122
AFTLNILLREIGAADLSGA TAFGT+TQLGPVVTVLVVAGAGATAICADLGARTIREEID
Sbjct 63 AFTLNILLREIGAADLSGAATAFGTVTQLGPVVTVLVVAGAGATAICADLGARTIREEID 122
Query 123 AMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLT 182
AM+VLGIDPIQRLVVPRVLAST VALLLNGLVCAIG+ GGY FSVFLQGVNPGAFINGLT
Sbjct 123 AMQVLGIDPIQRLVVPRVLASTFVALLLNGLVCAIGMVGGYVFSVFLQGVNPGAFINGLT 182
Query 183 VLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINV 242
VLTGL EL+++E+KA LFG+ AGLVGCYRGLTVKGGPKGVG+AVNETVVYAFICLFVINV
Sbjct 183 VLTGLGELMISEVKAFLFGIFAGLVGCYRGLTVKGGPKGVGDAVNETVVYAFICLFVINV 242
Query 243 VMTAIGVRI 251
VMTAIGVR+
Sbjct 243 VMTAIGVRV 251
>gi|145222146|ref|YP_001132824.1| hypothetical protein Mflv_1554 [Mycobacterium gilvum PYR-GCK]
gi|145214632|gb|ABP44036.1| protein of unknown function DUF140 [Mycobacterium gilvum PYR-GCK]
Length=237
Score = 427 bits (1097), Expect = 9e-118, Method: Compositional matrix adjust.
Identities = 218/234 (94%), Positives = 226/234 (97%), Gaps = 0/234 (0%)
Query 18 MSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAAD 77
MS+DT FRRPFQFREFL+QTWM+ARVSLVPTLLV+IPFTVLVAFTLNILLREIGAAD
Sbjct 1 MSLDTFVKTFRRPFQFREFLEQTWMIARVSLVPTLLVAIPFTVLVAFTLNILLREIGAAD 60
Query 78 LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV 137
LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV
Sbjct 61 LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV 120
Query 138 PRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRELILAEIKA 197
PRVLAST VALLLNGLVC IGLSGGY FSVFLQGVNPG+FINGLTVLTGL ELILAEIKA
Sbjct 121 PRVLASTFVALLLNGLVCLIGLSGGYVFSVFLQGVNPGSFINGLTVLTGLPELILAEIKA 180
Query 198 LLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRI 251
LLFGV+AGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINV+MTAIGVR+
Sbjct 181 LLFGVVAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVIMTAIGVRV 234
>gi|120406152|ref|YP_955981.1| hypothetical protein Mvan_5204 [Mycobacterium vanbaalenii PYR-1]
gi|119958970|gb|ABM15975.1| protein of unknown function DUF140 [Mycobacterium vanbaalenii
PYR-1]
Length=237
Score = 426 bits (1096), Expect = 1e-117, Method: Compositional matrix adjust.
Identities = 217/234 (93%), Positives = 226/234 (97%), Gaps = 0/234 (0%)
Query 18 MSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAAD 77
MS+DT FRRPFQFREFL+QTWM+ARVSLVPTLLV+IPFTVLVAFTLNILLREIGAAD
Sbjct 1 MSLDTFVKTFRRPFQFREFLEQTWMIARVSLVPTLLVAIPFTVLVAFTLNILLREIGAAD 60
Query 78 LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV 137
LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV
Sbjct 61 LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV 120
Query 138 PRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRELILAEIKA 197
PRVLAST VALLLNGLVC IGLSGGY FSVFLQGVNPGAFINGLTVLTGL EL+LAEIKA
Sbjct 121 PRVLASTFVALLLNGLVCLIGLSGGYVFSVFLQGVNPGAFINGLTVLTGLGELVLAEIKA 180
Query 198 LLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRI 251
LLFGV+AGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINV+MTA+GVR+
Sbjct 181 LLFGVVAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVIMTAVGVRV 234
>gi|315442585|ref|YP_004075464.1| ABC transporter involved in resistance to organic solvents, permease
[Mycobacterium sp. Spyr1]
gi|315260888|gb|ADT97629.1| ABC-type transport system involved in resistance to organic solvents,
permease component [Mycobacterium sp. Spyr1]
Length=237
Score = 425 bits (1092), Expect = 4e-117, Method: Compositional matrix adjust.
Identities = 217/234 (93%), Positives = 225/234 (97%), Gaps = 0/234 (0%)
Query 18 MSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAAD 77
MS+DT FRRPFQFREFL+QTWM+ARVSLVPTLLV+IPFTVLVAFTLNILLREIGAAD
Sbjct 1 MSLDTFVKTFRRPFQFREFLEQTWMIARVSLVPTLLVAIPFTVLVAFTLNILLREIGAAD 60
Query 78 LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV 137
LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV
Sbjct 61 LSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVV 120
Query 138 PRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRELILAEIKA 197
PRVLAST VALLLNGLVC IGLSGGY FSVFLQGVNPG+FINGLTVLTGL ELILAEIKA
Sbjct 121 PRVLASTFVALLLNGLVCLIGLSGGYVFSVFLQGVNPGSFINGLTVLTGLPELILAEIKA 180
Query 198 LLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRI 251
LLFG +AGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINV+MTAIGVR+
Sbjct 181 LLFGFVAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVIMTAIGVRV 234
>gi|226364205|ref|YP_002781987.1| YrbE family protein [Rhodococcus opacus B4]
gi|226242694|dbj|BAH53042.1| putative YrbE family protein [Rhodococcus opacus B4]
Length=254
Score = 372 bits (955), Expect = 3e-101, Method: Compositional matrix adjust.
Identities = 182/253 (72%), Positives = 223/253 (89%), Gaps = 0/253 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
++ L VP RAVGGFF MS +T RA F RPFQ REF+DQ W VARVS+VPT+LV+IPFTV
Sbjct 1 MVDLLEVPLRAVGGFFTMSGETLRAVFSRPFQRREFVDQAWFVARVSMVPTVLVAIPFTV 60
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LV+FT+NILLREIGAADLSGAG A GT+TQ+GP+VTVL+VAGAGATAICADL ARTIREE
Sbjct 61 LVSFTINILLREIGAADLSGAGAALGTVTQVGPIVTVLIVAGAGATAICADLSARTIREE 120
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAMRVLGI+PI RLVVPRVLAST+VALLLNGLVC IG+ GG+ FSV++Q VNPGAF+NG
Sbjct 121 IDAMRVLGINPIHRLVVPRVLASTVVALLLNGLVCTIGILGGFVFSVYIQDVNPGAFVNG 180
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
+T+LTG EL+++E+KA LFG++AGLV Y GL VKGG K VG+AVN+TVV++F+ LFV+
Sbjct 181 ITLLTGFGELVISEVKAGLFGMIAGLVAAYLGLNVKGGAKSVGDAVNQTVVFSFMALFVV 240
Query 241 NVVMTAIGVRISA 253
NV++TA+G++++A
Sbjct 241 NVLVTAVGIKLTA 253
>gi|54022502|ref|YP_116744.1| putative YrbE family protein [Nocardia farcinica IFM 10152]
gi|54014010|dbj|BAD55380.1| putative YrbE family protein [Nocardia farcinica IFM 10152]
Length=263
Score = 371 bits (952), Expect = 7e-101, Method: Compositional matrix adjust.
Identities = 188/252 (75%), Positives = 226/252 (90%), Gaps = 0/252 (0%)
Query 3 QQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLV 62
+ LAVP RAVGGFFE+S D ARA+ RRPFQ REF+DQ+W +ARVS+VPTLLV+IPFTVLV
Sbjct 12 EVLAVPLRAVGGFFELSADVARASVRRPFQAREFIDQSWFIARVSIVPTLLVAIPFTVLV 71
Query 63 AFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID 122
+FTLNILLREIGAADLSGAG AFG +TQ+GP+VTVL+VAGAGATAICADLGARTIREEID
Sbjct 72 SFTLNILLREIGAADLSGAGAAFGAVTQVGPIVTVLIVAGAGATAICADLGARTIREEID 131
Query 123 AMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLT 182
AMRVLGI+P+QRLVVPRVLAS VAL+LN LVC IG+ GG+ FSV+LQ VNPGAF+NG+T
Sbjct 132 AMRVLGINPVQRLVVPRVLASMFVALMLNSLVCTIGIVGGFLFSVYLQDVNPGAFVNGIT 191
Query 183 VLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINV 242
+LT L ELI++E+KA LFG++AGLV CY GL VKGGPK VG+AVN+TVV+AF+ LFV+NV
Sbjct 192 LLTHLPELIISEVKAGLFGLIAGLVACYLGLNVKGGPKSVGDAVNQTVVFAFMALFVVNV 251
Query 243 VMTAIGVRISAQ 254
V+TA+G++ + +
Sbjct 252 VVTAVGIKFTVR 263
>gi|111021668|ref|YP_704640.1| hypothetical protein RHA1_ro04696 [Rhodococcus jostii RHA1]
gi|110821198|gb|ABG96482.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=254
Score = 370 bits (951), Expect = 8e-101, Method: Compositional matrix adjust.
Identities = 181/253 (72%), Positives = 223/253 (89%), Gaps = 0/253 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
++ L VP RAVGGFF MS +T RA F RPFQ REF+DQ W VARVS+VPT+LV+IPFTV
Sbjct 1 MVDLLEVPLRAVGGFFTMSGETLRAVFSRPFQRREFVDQAWFVARVSMVPTVLVAIPFTV 60
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LV+FT+NILLREIGAADLSGAG A GT+TQ+GP+VTVL+VAGAGATAICADL ARTIREE
Sbjct 61 LVSFTINILLREIGAADLSGAGAALGTVTQVGPIVTVLIVAGAGATAICADLSARTIREE 120
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAMRVLGI+PI RLVVPRVLAST+VALLLNGLVC IG+ GG+ FSV++Q VNPGAF+NG
Sbjct 121 IDAMRVLGINPIHRLVVPRVLASTVVALLLNGLVCTIGILGGFVFSVYIQDVNPGAFVNG 180
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
+T+LTG EL+++E+KA LFG++AGLV Y GL V+GG K VG+AVN+TVV++F+ LFV+
Sbjct 181 ITLLTGFGELVISEVKAGLFGMIAGLVAAYLGLNVRGGAKSVGDAVNQTVVFSFMALFVV 240
Query 241 NVVMTAIGVRISA 253
NV++TA+G++++A
Sbjct 241 NVLVTAVGIKLTA 253
>gi|333918571|ref|YP_004492152.1| putative YrbE family protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333480792|gb|AEF39352.1| Putative YrbE family protein [Amycolicicoccus subflavus DQS3-9A1]
Length=254
Score = 367 bits (943), Expect = 7e-100, Method: Compositional matrix adjust.
Identities = 181/247 (74%), Positives = 214/247 (87%), Gaps = 0/247 (0%)
Query 7 VPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTL 66
VP RAVG FF TARA R PFQ REF+DQ W +ARVSLVPTLL+++PFTVLV FTL
Sbjct 7 VPLRAVGDFFGFVAQTARALVRPPFQAREFVDQAWFIARVSLVPTLLMAVPFTVLVTFTL 66
Query 67 NILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRV 126
NILL EIGAADLSGAG AFG +TQ+GP+VTVL+V+GAGATAICAD+GARTIREEIDAMRV
Sbjct 67 NILLHEIGAADLSGAGAAFGAVTQVGPIVTVLIVSGAGATAICADMGARTIREEIDAMRV 126
Query 127 LGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTG 186
LGI PIQRLVVPRVLASTLVAL+LNGLVC IG+ G Y FSV+LQ VNPGAFI+GLT+LTG
Sbjct 127 LGISPIQRLVVPRVLASTLVALMLNGLVCTIGILGSYVFSVYLQDVNPGAFIDGLTLLTG 186
Query 187 LRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTA 246
EL+++E+KA +FG++AGLV C+ GL V GGPK VG AVN+TVV+AF+ LFV+NVV+TA
Sbjct 187 FSELMISELKAAMFGMIAGLVACFLGLNVSGGPKSVGAAVNQTVVFAFMALFVVNVVITA 246
Query 247 IGVRISA 253
+G++I+A
Sbjct 247 LGIKITA 253
>gi|226304447|ref|YP_002764405.1| YrbE family protein [Rhodococcus erythropolis PR4]
gi|229494370|ref|ZP_04388133.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|226183562|dbj|BAH31666.1| putative YrbE family protein [Rhodococcus erythropolis PR4]
gi|229318732|gb|EEN84590.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=254
Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 181/253 (72%), Positives = 220/253 (87%), Gaps = 0/253 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
++ + VP RAVGGFF+MS T RA F RPFQ +EF+DQ W VARVS+VPT+LV+IPFTV
Sbjct 1 MVDLVEVPLRAVGGFFQMSAQTLRAVFSRPFQRQEFIDQAWFVARVSMVPTVLVAIPFTV 60
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LV+FT+NILLREIGAADLSGAG A GT+TQ+GP+VTVL+VAGAGATAICADL ARTIREE
Sbjct 61 LVSFTINILLREIGAADLSGAGAALGTVTQVGPIVTVLIVAGAGATAICADLSARTIREE 120
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAM+VLGI+PI RLVVPRVLAST VALLLNGLVC IG+ GG+ FSVF+Q VNPGAF+NG
Sbjct 121 IDAMKVLGINPIHRLVVPRVLASTGVALLLNGLVCTIGILGGFVFSVFIQDVNPGAFVNG 180
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
+T+LTG EL+L+ +KA LFG++AGLV Y GL VKGG K VG+AVN+TVV+AF+ LFV+
Sbjct 181 ITLLTGFGELMLSMVKAGLFGMIAGLVAAYLGLNVKGGAKSVGDAVNQTVVFAFMALFVV 240
Query 241 NVVMTAIGVRISA 253
NV++T IG++++A
Sbjct 241 NVLITTIGIKLTA 253
>gi|312138208|ref|YP_004005544.1| integral membrane protein yrbe2a [Rhodococcus equi 103S]
gi|311887547|emb|CBH46859.1| putative integral membrane protein YrbE2A [Rhodococcus equi 103S]
Length=275
Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 176/253 (70%), Positives = 220/253 (87%), Gaps = 0/253 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
++ L VP RA GGFF MS DT RA F RPFQ REF+DQ W VARVS+VPT+LV+IPFTV
Sbjct 22 VVDLLEVPLRAAGGFFAMSADTLRAVFSRPFQRREFVDQAWFVARVSMVPTVLVAIPFTV 81
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LV+FT+NILLREIGAADLSGAG A G +TQ+GP+VTVL+VAGAGATAICADL ARTIREE
Sbjct 82 LVSFTINILLREIGAADLSGAGAALGAVTQVGPIVTVLIVAGAGATAICADLAARTIREE 141
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAMRVLGI+PI RLVVPRVLAST+VALLLNGLVC IG+ GG+ FSV++Q VNPGAF+NG
Sbjct 142 IDAMRVLGINPIHRLVVPRVLASTVVALLLNGLVCTIGILGGFLFSVYVQDVNPGAFVNG 201
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
+T+LTG EL+++ +KA LFG++AGL+ Y G+ V+GG K VG+AVN+TVV++F+ LFV+
Sbjct 202 ITLLTGFGELMISMLKAGLFGMIAGLMAAYLGMNVRGGAKSVGDAVNQTVVFSFMALFVV 261
Query 241 NVVMTAIGVRISA 253
NV++TA+G+++++
Sbjct 262 NVLVTAVGIKLTS 274
>gi|325674886|ref|ZP_08154573.1| membrane protein YrbE4A [Rhodococcus equi ATCC 33707]
gi|325554472|gb|EGD24147.1| membrane protein YrbE4A [Rhodococcus equi ATCC 33707]
Length=263
Score = 361 bits (926), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 176/253 (70%), Positives = 220/253 (87%), Gaps = 0/253 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
++ L VP RA GGFF MS DT RA F RPFQ REF+DQ W VARVS+VPT+LV+IPFTV
Sbjct 10 VVDLLEVPLRAAGGFFAMSADTLRAVFSRPFQRREFVDQAWFVARVSMVPTVLVAIPFTV 69
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LV+FT+NILLREIGAADLSGAG A G +TQ+GP+VTVL+VAGAGATAICADL ARTIREE
Sbjct 70 LVSFTINILLREIGAADLSGAGAALGAVTQVGPIVTVLIVAGAGATAICADLAARTIREE 129
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAMRVLGI+PI RLVVPRVLAST+VALLLNGLVC IG+ GG+ FSV++Q VNPGAF+NG
Sbjct 130 IDAMRVLGINPIHRLVVPRVLASTVVALLLNGLVCTIGILGGFLFSVYVQDVNPGAFVNG 189
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
+T+LTG EL+++ +KA LFG++AGL+ Y G+ V+GG K VG+AVN+TVV++F+ LFV+
Sbjct 190 ITLLTGFGELMISMLKAGLFGMIAGLMAAYLGMNVRGGAKSVGDAVNQTVVFSFMALFVV 249
Query 241 NVVMTAIGVRISA 253
NV++TA+G+++++
Sbjct 250 NVLVTAVGIKLTS 262
>gi|183984680|ref|YP_001852971.1| hypothetical protein MMAR_4712 [Mycobacterium marinum M]
gi|183178006|gb|ACC43116.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=268
Score = 360 bits (925), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 180/248 (73%), Positives = 218/248 (88%), Gaps = 1/248 (0%)
Query 8 PARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLN 67
P +AVGG F MS D + AFRRPFQ+REFL+Q+W VARV+++PTLLV+IPFTVLV+FTLN
Sbjct 21 PMQAVGGLFAMSADAIKFAFRRPFQWREFLEQSWFVARVAMLPTLLVAIPFTVLVSFTLN 80
Query 68 ILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVL 127
ILLRE+GAADLSGAG AFG +TQ+GP+VTVL+VAGAGATA+CADLG+RTIREEIDAM VL
Sbjct 81 ILLRELGAADLSGAGAAFGAVTQVGPLVTVLIVAGAGATAMCADLGSRTIREEIDAMEVL 140
Query 128 GIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGL 187
GI+P+QRLV PR+LAS LVALLLN LV IG+ GGY FSVF+Q VNPGAF G+T+LTG+
Sbjct 141 GINPVQRLVTPRMLASGLVALLLNSLVVIIGIVGGYVFSVFVQDVNPGAFAAGITLLTGV 200
Query 188 RELILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVVMTA 246
E+I++ +KA LFG++AGLV CYRGLT+ GG K VGNAVNETVVYAF+ LFV+NVV+TA
Sbjct 201 PEVIISCVKAALFGLIAGLVACYRGLTISGGGAKAVGNAVNETVVYAFMSLFVVNVVVTA 260
Query 247 IGVRISAQ 254
IG+R+SA+
Sbjct 261 IGIRMSAK 268
>gi|240170399|ref|ZP_04749058.1| hypothetical protein MkanA1_13895 [Mycobacterium kansasii ATCC
12478]
Length=247
Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 180/246 (74%), Positives = 215/246 (88%), Gaps = 1/246 (0%)
Query 10 RAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNIL 69
+AVGG F MS D + FRRPFQ+REFL+Q+W VARVS+ PTLLV+IPFTVLV+FTLNIL
Sbjct 2 QAVGGLFAMSADAIKFVFRRPFQWREFLEQSWFVARVSMAPTLLVAIPFTVLVSFTLNIL 61
Query 70 LREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGI 129
LRE+GAADLSGAG AFG +TQ+GP+VTVL+VAGAGATA+CADLG+RTIREEIDAM VLGI
Sbjct 62 LRELGAADLSGAGAAFGAVTQVGPLVTVLIVAGAGATAMCADLGSRTIREEIDAMEVLGI 121
Query 130 DPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRE 189
+P+QRLV PR+LAS LVALLLN LV IG+ GGY FSVF+Q VNPGAF G+T+LTG+ E
Sbjct 122 NPVQRLVTPRMLASGLVALLLNSLVVIIGILGGYVFSVFVQDVNPGAFAAGITLLTGVPE 181
Query 190 LILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVVMTAIG 248
+I++ +KA LFG++AGLV CYRGLTV GG K VGNAVNETVVYAF+ LFV+NVV+TAIG
Sbjct 182 VIISCVKAALFGLIAGLVACYRGLTVSGGGAKAVGNAVNETVVYAFMSLFVVNVVVTAIG 241
Query 249 VRISAQ 254
+R+SA+
Sbjct 242 IRMSAK 247
>gi|118470268|ref|YP_889052.1| hypothetical protein MSMEG_4796 [Mycobacterium smegmatis str.
MC2 155]
gi|118171555|gb|ABK72451.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=257
Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 184/251 (74%), Positives = 215/251 (86%), Gaps = 1/251 (0%)
Query 3 QQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLV 62
+ L+ P +AVG F MS+D AFRRPFQ REFLDQ W +ARVS+ PTLLV+IPFTVLV
Sbjct 5 RNLSGPMQAVGALFSMSLDAIMFAFRRPFQGREFLDQCWFIARVSMAPTLLVAIPFTVLV 64
Query 63 AFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID 122
+FTLNILLRE+GAADLSGAG AFG +TQLGP+VTVL+VAGAGATA+CADLG+RTIREEID
Sbjct 65 SFTLNILLRELGAADLSGAGAAFGAVTQLGPMVTVLIVAGAGATAMCADLGSRTIREEID 124
Query 123 AMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLT 182
AM VLGI+PIQRLV PR+LAS LVALLLN LV IG+ GGY FSVF+Q VNPGAF G+T
Sbjct 125 AMEVLGINPIQRLVTPRILASGLVALLLNSLVVIIGILGGYVFSVFIQDVNPGAFAAGIT 184
Query 183 VLTGLRELILAEIKALLFGVMAGLVGCYRGLT-VKGGPKGVGNAVNETVVYAFICLFVIN 241
+LTG+ E+I++ IKA LFG++AGLV CYRGLT V GG K VGNAVNETVVYAF+ LFVIN
Sbjct 185 LLTGVPEVIISCIKAALFGLIAGLVACYRGLTIVGGGAKAVGNAVNETVVYAFMALFVIN 244
Query 242 VVMTAIGVRIS 252
VV+TAIG+R++
Sbjct 245 VVVTAIGIRMT 255
>gi|342861420|ref|ZP_08718068.1| hypothetical protein MCOL_21151 [Mycobacterium colombiense CECT
3035]
gi|342131320|gb|EGT84601.1| hypothetical protein MCOL_21151 [Mycobacterium colombiense CECT
3035]
Length=270
Score = 357 bits (916), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 178/248 (72%), Positives = 218/248 (88%), Gaps = 1/248 (0%)
Query 8 PARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLN 67
P +A+GG M+ D A+ FRRPFQ REFL+Q+W VARVS++PTLLV+IPFTVLV+FTLN
Sbjct 23 PFQAIGGLVAMAADAAKFLFRRPFQGREFLEQSWFVARVSMMPTLLVAIPFTVLVSFTLN 82
Query 68 ILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVL 127
ILLRE+GAADLSGAG AFG +TQ+GP+VTVL+VAGAGATA+CADLG+RTIREEIDA+ VL
Sbjct 83 ILLRELGAADLSGAGAAFGAVTQVGPLVTVLIVAGAGATAMCADLGSRTIREEIDALEVL 142
Query 128 GIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGL 187
GI+PIQRLV PR+LAS +VALLLN +VC IG+ GGY FSVF+Q VNPGAF G+T+LTG+
Sbjct 143 GINPIQRLVAPRMLASGVVALLLNSVVCIIGILGGYFFSVFVQQVNPGAFAAGITLLTGI 202
Query 188 RELILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVVMTA 246
ELI++ +KALLFG++AGLV CYRGLT+ GG K VGNAVNETVVYAF+ LFVINVV+TA
Sbjct 203 PELIISSVKALLFGLVAGLVACYRGLTITGGGAKAVGNAVNETVVYAFMSLFVINVVVTA 262
Query 247 IGVRISAQ 254
IG++++A+
Sbjct 263 IGIQMTAK 270
>gi|126436263|ref|YP_001071954.1| hypothetical protein Mjls_3686 [Mycobacterium sp. JLS]
gi|126236063|gb|ABN99463.1| protein of unknown function DUF140 [Mycobacterium sp. JLS]
Length=270
Score = 357 bits (916), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 178/254 (71%), Positives = 216/254 (86%), Gaps = 1/254 (0%)
Query 2 IQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVL 61
++ LA P AVGG F MS D R FRRPFQ+REFL+Q+W VA+VSL PT+LV+IPFTVL
Sbjct 17 VKNLAGPMAAVGGLFAMSADAIRYVFRRPFQWREFLEQSWFVAKVSLAPTVLVAIPFTVL 76
Query 62 VAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEI 121
V+FTLNILLRE+GAADLSGAG AFG +TQ+GP+VTVL+VAGAGATA+CADLG+RTIREEI
Sbjct 77 VSFTLNILLRELGAADLSGAGAAFGAVTQVGPLVTVLIVAGAGATAMCADLGSRTIREEI 136
Query 122 DAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGL 181
AM VLGIDP+QRLV PR+LAS LVALLLN LV IG+ GGY FSVF+Q VNPGAF G+
Sbjct 137 SAMEVLGIDPVQRLVTPRMLASGLVALLLNSLVVIIGILGGYTFSVFIQDVNPGAFAAGI 196
Query 182 TVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVI 240
T+LTG+ E+I++ +KALLFG++AGLV CYRGLTV GG K VGNAVNETVVYAF+ LF I
Sbjct 197 TLLTGVPEMIISCVKALLFGLIAGLVACYRGLTVSGGGAKAVGNAVNETVVYAFMALFAI 256
Query 241 NVVMTAIGVRISAQ 254
NV++T +G+ ++++
Sbjct 257 NVLVTTVGIHMASE 270
>gi|108800639|ref|YP_640836.1| hypothetical protein Mmcs_3673 [Mycobacterium sp. MCS]
gi|119869778|ref|YP_939730.1| hypothetical protein Mkms_3746 [Mycobacterium sp. KMS]
gi|108771058|gb|ABG09780.1| protein of unknown function DUF140 [Mycobacterium sp. MCS]
gi|119695867|gb|ABL92940.1| protein of unknown function DUF140 [Mycobacterium sp. KMS]
Length=270
Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 178/254 (71%), Positives = 216/254 (86%), Gaps = 1/254 (0%)
Query 2 IQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVL 61
++ LA P AVGG F MS D R FRRPFQ+REFL+Q+W VA+VSL PT+LV+IPFTVL
Sbjct 17 VKNLAGPMAAVGGLFAMSADAIRNVFRRPFQWREFLEQSWFVAKVSLAPTVLVAIPFTVL 76
Query 62 VAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEI 121
V+FTLNILLRE+GAADLSGAG AFG +TQ+GP+VTVL+VAGAGATA+CADLG+RTIREEI
Sbjct 77 VSFTLNILLRELGAADLSGAGAAFGAVTQVGPLVTVLIVAGAGATAMCADLGSRTIREEI 136
Query 122 DAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGL 181
AM VLGIDP+QRLV PR+LAS LVALLLN LV IG+ GGY FSVF+Q VNPGAF G+
Sbjct 137 SAMEVLGIDPVQRLVTPRMLASGLVALLLNSLVVIIGILGGYTFSVFIQDVNPGAFAAGI 196
Query 182 TVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVI 240
T+LTG+ E+I++ +KALLFG++AGLV CYRGLTV GG K VGNAVNETVVYAF+ LF I
Sbjct 197 TLLTGVPEMIISCVKALLFGLIAGLVACYRGLTVSGGGAKAVGNAVNETVVYAFMALFAI 256
Query 241 NVVMTAIGVRISAQ 254
NV++T +G+ ++++
Sbjct 257 NVLVTTVGIHMASE 270
>gi|342860430|ref|ZP_08717081.1| hypothetical protein MCOL_16186 [Mycobacterium colombiense CECT
3035]
gi|342132085|gb|EGT85326.1| hypothetical protein MCOL_16186 [Mycobacterium colombiense CECT
3035]
Length=260
Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 178/252 (71%), Positives = 215/252 (86%), Gaps = 1/252 (0%)
Query 4 QLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVA 63
L+ P AVG F MS D + FRRPFQ+REFL+Q+W VARVSL PTLLV+IPFTVLV+
Sbjct 9 DLSGPMHAVGALFAMSADAVKFLFRRPFQWREFLEQSWFVARVSLAPTLLVAIPFTVLVS 68
Query 64 FTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDA 123
FTLNILLRE+GAADLSGAG AFG +TQLGP+VTVL+VAGAGATA+CADLG+RTIREEIDA
Sbjct 69 FTLNILLRELGAADLSGAGAAFGAVTQLGPLVTVLIVAGAGATAMCADLGSRTIREEIDA 128
Query 124 MRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTV 183
M VLGI+PIQRLV PR+LAS LVA LLN LV IG+ GGY FSVF+Q VNPGAF G+T+
Sbjct 129 MEVLGINPIQRLVTPRMLASGLVAFLLNSLVVIIGVLGGYVFSVFVQDVNPGAFAAGITL 188
Query 184 LTGLRELILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINV 242
LTG+ E++++ +KA LFG++AGLV CYRGL++ GG K VGNAVNETVVYAF+ LFV+NV
Sbjct 189 LTGVPEVVISCVKAALFGLIAGLVACYRGLSITGGGAKAVGNAVNETVVYAFMSLFVVNV 248
Query 243 VMTAIGVRISAQ 254
V+TAIG++++A+
Sbjct 249 VVTAIGIKMTAK 260
>gi|118469944|ref|YP_887173.1| hypothetical protein MSMEG_2853 [Mycobacterium smegmatis str.
MC2 155]
gi|118171231|gb|ABK72127.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=270
Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/244 (74%), Positives = 213/244 (88%), Gaps = 1/244 (0%)
Query 10 RAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNIL 69
A+GG F MS D R AFRRPFQ REFL+Q+W VARVSL PTLLV+IPFTVLV+FTLNIL
Sbjct 25 EAIGGLFAMSSDAVRFAFRRPFQGREFLEQSWFVARVSLAPTLLVAIPFTVLVSFTLNIL 84
Query 70 LREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGI 129
LRE+GAADLSGAG AFG +TQ+GP+VTVL+VAGAGATA+CADLG+RTIR+EIDAM VLGI
Sbjct 85 LRELGAADLSGAGAAFGAVTQVGPMVTVLIVAGAGATAMCADLGSRTIRDEIDAMEVLGI 144
Query 130 DPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRE 189
+PIQRLV PR+LAS LVALLLN LV IG+ GGY FSVF+QGVNPGAF G+T+LTG+ E
Sbjct 145 NPIQRLVTPRILASGLVALLLNSLVVIIGILGGYTFSVFIQGVNPGAFAAGITLLTGVPE 204
Query 190 LILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVVMTAIG 248
+I++ IKA+LFG +AG+V C+RGLT+ GG K VGNAVNETVVYAF+ LFV+NVV+TAIG
Sbjct 205 VIISCIKAMLFGFIAGMVACFRGLTIAGGGAKAVGNAVNETVVYAFMALFVVNVVVTAIG 264
Query 249 VRIS 252
+R++
Sbjct 265 IRMT 268
>gi|41406855|ref|NP_959691.1| hypothetical protein MAP0757 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395205|gb|AAS03074.1| hypothetical protein MAP_0757 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=260
Score = 355 bits (910), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 177/246 (72%), Positives = 213/246 (87%), Gaps = 1/246 (0%)
Query 10 RAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNIL 69
+AVG F MS D + FRRPFQ+REFL+Q+W VARVSL PTLLV+IPFTVLV+FTLNIL
Sbjct 15 QAVGALFAMSADAVKYLFRRPFQWREFLEQSWFVARVSLAPTLLVAIPFTVLVSFTLNIL 74
Query 70 LREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGI 129
LRE+GAADLSGAG AFG +TQLGP+VTVL+VAGAGATA+CADLG+RTIREEIDAM VLGI
Sbjct 75 LRELGAADLSGAGAAFGAVTQLGPLVTVLIVAGAGATAMCADLGSRTIREEIDAMEVLGI 134
Query 130 DPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRE 189
+PIQRLV PR+LAS LVA LLN LV IG+ GGY FSVF+Q VNPGAF G+T+LTG+ E
Sbjct 135 NPIQRLVTPRMLASGLVAFLLNSLVVIIGVLGGYVFSVFVQDVNPGAFAAGITLLTGVPE 194
Query 190 LILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVVMTAIG 248
++++ IKA LFG++AGLV CYRGL++ GG K VGNAVNETVVYAF+ LFV+NVV+TAIG
Sbjct 195 VVISCIKAALFGLIAGLVACYRGLSITGGGAKAVGNAVNETVVYAFMSLFVVNVVVTAIG 254
Query 249 VRISAQ 254
++++A+
Sbjct 255 IKMTAK 260
>gi|336461223|gb|EGO40099.1| ABC-type transport system involved in resistance to organic solvents,
permease component [Mycobacterium avium subsp. paratuberculosis
S397]
Length=272
Score = 354 bits (909), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 177/246 (72%), Positives = 213/246 (87%), Gaps = 1/246 (0%)
Query 10 RAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNIL 69
+AVG F MS D + FRRPFQ+REFL+Q+W VARVSL PTLLV+IPFTVLV+FTLNIL
Sbjct 27 QAVGALFAMSADAVKYLFRRPFQWREFLEQSWFVARVSLAPTLLVAIPFTVLVSFTLNIL 86
Query 70 LREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGI 129
LRE+GAADLSGAG AFG +TQLGP+VTVL+VAGAGATA+CADLG+RTIREEIDAM VLGI
Sbjct 87 LRELGAADLSGAGAAFGAVTQLGPLVTVLIVAGAGATAMCADLGSRTIREEIDAMEVLGI 146
Query 130 DPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRE 189
+PIQRLV PR+LAS LVA LLN LV IG+ GGY FSVF+Q VNPGAF G+T+LTG+ E
Sbjct 147 NPIQRLVTPRMLASGLVAFLLNSLVVIIGVLGGYVFSVFVQDVNPGAFAAGITLLTGVPE 206
Query 190 LILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVVMTAIG 248
++++ IKA LFG++AGLV CYRGL++ GG K VGNAVNETVVYAF+ LFV+NVV+TAIG
Sbjct 207 VVISCIKAALFGLIAGLVACYRGLSITGGGAKAVGNAVNETVVYAFMSLFVVNVVVTAIG 266
Query 249 VRISAQ 254
++++A+
Sbjct 267 IKMTAK 272
>gi|254773835|ref|ZP_05215351.1| TrnB1 protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=260
Score = 354 bits (909), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 177/246 (72%), Positives = 213/246 (87%), Gaps = 1/246 (0%)
Query 10 RAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNIL 69
+AVG F MS D + FRRPFQ+REFL+Q+W VARVSL PTLLV+IPFTVLV+FTLNIL
Sbjct 15 QAVGALFAMSADAVKYLFRRPFQWREFLEQSWFVARVSLAPTLLVAIPFTVLVSFTLNIL 74
Query 70 LREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGI 129
LRE+GAADLSGAG AFG +TQLGP+VTVL+VAGAGATA+CADLG+RTIREEIDAM VLGI
Sbjct 75 LRELGAADLSGAGAAFGAVTQLGPLVTVLIVAGAGATAMCADLGSRTIREEIDAMEVLGI 134
Query 130 DPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRE 189
+PIQRLV PR+LAS LVA LLN LV IG+ GGY FSVF+Q VNPGAF G+T+LTG+ E
Sbjct 135 NPIQRLVTPRMLASGLVAFLLNSLVVIIGVLGGYVFSVFVQDVNPGAFAAGITLLTGVPE 194
Query 190 LILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVVMTAIG 248
++++ IKA LFG++AGLV CYRGL++ GG K VGNAVNETVVYAF+ LFV+NVV+TAIG
Sbjct 195 VVISCIKAALFGLIAGLVACYRGLSITGGGAKAVGNAVNETVVYAFMSLFVVNVVVTAIG 254
Query 249 VRISAQ 254
++++A+
Sbjct 255 IKMTAK 260
>gi|118463749|ref|YP_880207.1| TrnB1 protein [Mycobacterium avium 104]
gi|118165036|gb|ABK65933.1| TrnB1 protein [Mycobacterium avium 104]
Length=272
Score = 354 bits (909), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 177/246 (72%), Positives = 213/246 (87%), Gaps = 1/246 (0%)
Query 10 RAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNIL 69
+AVG F MS D + FRRPFQ+REFL+Q+W VARVSL PTLLV+IPFTVLV+FTLNIL
Sbjct 27 QAVGALFAMSADAVKYLFRRPFQWREFLEQSWFVARVSLAPTLLVAIPFTVLVSFTLNIL 86
Query 70 LREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGI 129
LRE+GAADLSGAG AFG +TQLGP+VTVL+VAGAGATA+CADLG+RTIREEIDAM VLGI
Sbjct 87 LRELGAADLSGAGAAFGAVTQLGPLVTVLIVAGAGATAMCADLGSRTIREEIDAMEVLGI 146
Query 130 DPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRE 189
+PIQRLV PR+LAS LVA LLN LV IG+ GGY FSVF+Q VNPGAF G+T+LTG+ E
Sbjct 147 NPIQRLVTPRMLASGLVAFLLNSLVVIIGVLGGYVFSVFVQDVNPGAFAAGITLLTGVPE 206
Query 190 LILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVVMTAIG 248
++++ IKA LFG++AGLV CYRGL++ GG K VGNAVNETVVYAF+ LFV+NVV+TAIG
Sbjct 207 VVISCIKAALFGLIAGLVACYRGLSITGGGAKAVGNAVNETVVYAFMSLFVVNVVVTAIG 266
Query 249 VRISAQ 254
++++A+
Sbjct 267 IKMTAK 272
>gi|108797253|ref|YP_637450.1| hypothetical protein Mmcs_0273 [Mycobacterium sp. MCS]
gi|119866338|ref|YP_936290.1| hypothetical protein Mkms_0283 [Mycobacterium sp. KMS]
gi|126432877|ref|YP_001068568.1| hypothetical protein Mjls_0264 [Mycobacterium sp. JLS]
gi|108767672|gb|ABG06394.1| protein of unknown function DUF140 [Mycobacterium sp. MCS]
gi|119692427|gb|ABL89500.1| protein of unknown function DUF140 [Mycobacterium sp. KMS]
gi|126232677|gb|ABN96077.1| protein of unknown function DUF140 [Mycobacterium sp. JLS]
Length=256
Score = 353 bits (906), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 179/247 (73%), Positives = 215/247 (88%), Gaps = 1/247 (0%)
Query 8 PARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLN 67
P AVGG F M++D R FRRPFQ REFL+Q+W VARVSL PTLLV+IPFTVLV+FTLN
Sbjct 9 PLGAVGGLFGMALDAVRFTFRRPFQAREFLEQSWFVARVSLAPTLLVAIPFTVLVSFTLN 68
Query 68 ILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVL 127
ILLRE+GAADLSGAG AFG +TQ+GP+VTVL+VAGAGATA+CADLG+RTIREEI+AM VL
Sbjct 69 ILLRELGAADLSGAGAAFGAVTQVGPLVTVLIVAGAGATAMCADLGSRTIREEIEAMEVL 128
Query 128 GIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGL 187
GI+P+ RLV PR+LAS LVALLLN LV IG+ GGYAFSVF+Q VNPGAF G+T+LTG+
Sbjct 129 GINPVARLVTPRMLASGLVALLLNSLVVIIGIVGGYAFSVFVQDVNPGAFAAGITLLTGI 188
Query 188 RELILAEIKALLFGVMAGLVGCYRGLTV-KGGPKGVGNAVNETVVYAFICLFVINVVMTA 246
E+I++ +KA LFG++AGLV CYRGL++ +GG K VGNAVNETVVYAF+ LFVINVV+TA
Sbjct 189 GEVIISCVKAALFGLIAGLVACYRGLSINRGGAKAVGNAVNETVVYAFMALFVINVVVTA 248
Query 247 IGVRISA 253
IG+R++A
Sbjct 249 IGIRMTA 255
>gi|145223093|ref|YP_001133771.1| hypothetical protein Mflv_2506 [Mycobacterium gilvum PYR-GCK]
gi|145215579|gb|ABP44983.1| protein of unknown function DUF140 [Mycobacterium gilvum PYR-GCK]
Length=269
Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 176/244 (73%), Positives = 214/244 (88%), Gaps = 1/244 (0%)
Query 10 RAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNIL 69
+AVGGFF M++D R F RPFQ+REFL+Q+W VA+VS+ PTLLV+IPFTVLV+FTLNIL
Sbjct 24 QAVGGFFSMALDAVRFVFVRPFQWREFLEQSWFVAKVSMAPTLLVAIPFTVLVSFTLNIL 83
Query 70 LREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGI 129
LRE+GAADLSGAG AFG +TQ+GP+VTVL+VAGAGATA+CADLG+RTIREEIDAM VLGI
Sbjct 84 LRELGAADLSGAGAAFGAVTQVGPLVTVLIVAGAGATAMCADLGSRTIREEIDAMEVLGI 143
Query 130 DPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRE 189
+P+QRLV PR+LAS LVALLLN LV IG+ GGY FS+F+Q VNPGAF G+T+LTG+ E
Sbjct 144 NPVQRLVTPRMLASGLVALLLNSLVVIIGILGGYFFSIFVQDVNPGAFAAGITLLTGVPE 203
Query 190 LILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVVMTAIG 248
+I++ +KA LFG++AGLV CYRGLT+ GG K VGNAVNETVVYAF+ LFVINVV+TAIG
Sbjct 204 VIISCVKAALFGLIAGLVACYRGLTITGGGAKAVGNAVNETVVYAFMALFVINVVVTAIG 263
Query 249 VRIS 252
+R++
Sbjct 264 IRMT 267
>gi|120403833|ref|YP_953662.1| hypothetical protein Mvan_2849 [Mycobacterium vanbaalenii PYR-1]
gi|119956651|gb|ABM13656.1| protein of unknown function DUF140 [Mycobacterium vanbaalenii
PYR-1]
Length=270
Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 176/250 (71%), Positives = 216/250 (87%), Gaps = 1/250 (0%)
Query 5 LAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAF 64
+A P + VGG MS D + FRRPFQ REFL+Q+W VARVSL+PTLLV+IPFTVLV+F
Sbjct 20 MAAPMQGVGGLLSMSADAVKFLFRRPFQGREFLEQSWFVARVSLMPTLLVAIPFTVLVSF 79
Query 65 TLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAM 124
TLNILLRE+GAADLSGAG AFG +TQ+GP+VTVL+VAGAGATA+CADLG+RTIREEIDA+
Sbjct 80 TLNILLRELGAADLSGAGAAFGAVTQVGPMVTVLIVAGAGATAMCADLGSRTIREEIDAL 139
Query 125 RVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVL 184
VLGI+P+QRLV PR+LAS LVALLLN LV IG+ GGY FS+F+QGVNPGAF G+T+L
Sbjct 140 EVLGINPVQRLVTPRMLASGLVALLLNSLVVIIGILGGYFFSIFIQGVNPGAFAAGITLL 199
Query 185 TGLRELILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVV 243
TG+ E+I++ +KA LFG++AGLV CYRGL++ GG K VGNAVNETVVYAF+ LFV+NVV
Sbjct 200 TGVPEVIISCVKAALFGLIAGLVACYRGLSISGGGAKAVGNAVNETVVYAFMALFVVNVV 259
Query 244 MTAIGVRISA 253
+TAIG+R+++
Sbjct 260 VTAIGIRMTS 269
>gi|315443550|ref|YP_004076429.1| ABC transporter involved in resistance to organic solvents, permease
[Mycobacterium sp. Spyr1]
gi|315261853|gb|ADT98594.1| ABC-type transport system involved in resistance to organic solvents,
permease component [Mycobacterium sp. Spyr1]
Length=269
Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 176/244 (73%), Positives = 214/244 (88%), Gaps = 1/244 (0%)
Query 10 RAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNIL 69
+AVGGFF M++D R F RPFQ+REFL+Q+W VA+VS+ PTLLV+IPFTVLV+FTLNIL
Sbjct 24 QAVGGFFSMALDAVRFVFVRPFQWREFLEQSWFVAKVSMAPTLLVAIPFTVLVSFTLNIL 83
Query 70 LREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGI 129
LRE+GAADLSGAG AFG +TQ+GP+VTVL+VAGAGATA+CADLG+RTIREEIDAM VLGI
Sbjct 84 LRELGAADLSGAGAAFGAVTQVGPLVTVLIVAGAGATAMCADLGSRTIREEIDAMEVLGI 143
Query 130 DPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRE 189
+P+QRLV PR+LAS LVALLLN LV IG+ GGY FS+F+Q VNPGAF G+T+LTG+ E
Sbjct 144 NPVQRLVTPRMLASGLVALLLNSLVVIIGILGGYFFSIFVQDVNPGAFAAGITLLTGVPE 203
Query 190 LILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVVMTAIG 248
+I++ +KA LFG++AGLV CYRGLT+ GG K VGNAVNETVVYAF+ LFVINVV+TAIG
Sbjct 204 VIISCVKAALFGLIAGLVACYRGLTITGGGAKAVGNAVNETVVYAFMALFVINVVVTAIG 263
Query 249 VRIS 252
+R++
Sbjct 264 IRMT 267
>gi|229492731|ref|ZP_04386532.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229320390|gb|EEN86210.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=257
Score = 351 bits (900), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 181/249 (73%), Positives = 219/249 (88%), Gaps = 0/249 (0%)
Query 5 LAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAF 64
LA P R +G F+ M D A FR FQ +EFL+Q+WM+ARVS+VPT+LV++PFTVLV+F
Sbjct 8 LAGPMRELGQFYRMGADVAVGLFRTRFQMQEFLEQSWMIARVSIVPTVLVAVPFTVLVSF 67
Query 65 TLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAM 124
TLNILLREIGAADLSGAG A G +TQ+GPVVTVL+VAGAGATAI ADLG+RTIREEIDAM
Sbjct 68 TLNILLREIGAADLSGAGAALGAVTQVGPVVTVLIVAGAGATAIAADLGSRTIREEIDAM 127
Query 125 RVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVL 184
VLGIDPI RLV+PRV+AST+VALLLNGLVC IG++GGYAFSVFLQGVNPGAF+ G+T+L
Sbjct 128 EVLGIDPITRLVIPRVVASTVVALLLNGLVCVIGIAGGYAFSVFLQGVNPGAFVEGITLL 187
Query 185 TGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVM 244
TGL E+ L+ +KA LFG++AGLV CYRGL+V+GGPKGVG AVNETVVYAF+ LFV+N ++
Sbjct 188 TGLPEVALSMVKAALFGMLAGLVACYRGLSVRGGPKGVGEAVNETVVYAFMALFVVNTIV 247
Query 245 TAIGVRISA 253
TA+G+R++A
Sbjct 248 TAVGIRLTA 256
>gi|226306858|ref|YP_002766818.1| YrbE family protein [Rhodococcus erythropolis PR4]
gi|226185975|dbj|BAH34079.1| putative YrbE family protein [Rhodococcus erythropolis PR4]
Length=257
Score = 351 bits (900), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 181/249 (73%), Positives = 219/249 (88%), Gaps = 0/249 (0%)
Query 5 LAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAF 64
LA P R +G F+ M D A FR FQ +EFL+Q+WM+ARVS+VPT+LV++PFTVLV+F
Sbjct 8 LAGPMRELGQFYRMGADVAVGLFRTRFQVQEFLEQSWMIARVSIVPTVLVAVPFTVLVSF 67
Query 65 TLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAM 124
TLNILLREIGAADLSGAG A G +TQ+GPVVTVL+VAGAGATAI ADLG+RTIREEIDAM
Sbjct 68 TLNILLREIGAADLSGAGAALGAVTQVGPVVTVLIVAGAGATAIAADLGSRTIREEIDAM 127
Query 125 RVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVL 184
VLGIDPI RLV+PRV+AST+VALLLNGLVC IG++GGYAFSVFLQGVNPGAF+ G+T+L
Sbjct 128 EVLGIDPINRLVIPRVVASTVVALLLNGLVCVIGIAGGYAFSVFLQGVNPGAFVEGITLL 187
Query 185 TGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVM 244
TGL E+ L+ +KA LFG++AGLV CYRGL+V+GGPKGVG AVNETVVYAF+ LFV+N ++
Sbjct 188 TGLPEVALSMVKAALFGMLAGLVACYRGLSVRGGPKGVGEAVNETVVYAFMALFVVNTIV 247
Query 245 TAIGVRISA 253
TA+G+R++A
Sbjct 248 TAVGIRLTA 256
>gi|226361938|ref|YP_002779716.1| YrbE family protein [Rhodococcus opacus B4]
gi|226240423|dbj|BAH50771.1| putative YrbE family protein [Rhodococcus opacus B4]
Length=267
Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 173/241 (72%), Positives = 210/241 (88%), Gaps = 0/241 (0%)
Query 10 RAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNIL 69
RAVGGFFE+ +T RA +RPFQ+RE + Q+W + RV+L+PTLLV++PFTVLV FTLNIL
Sbjct 22 RAVGGFFELCGETFRAMAKRPFQWRELVLQSWFIVRVALLPTLLVALPFTVLVVFTLNIL 81
Query 70 LREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGI 129
L E GAADLSGAG G +TQ+GP+VTVL+VAGAGATAICADLGARTIREEIDA+RVLGI
Sbjct 82 LVEFGAADLSGAGAGLGAVTQIGPLVTVLIVAGAGATAICADLGARTIREEIDAIRVLGI 141
Query 130 DPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRE 189
DPIQRLVVPRVLAS VA+LLNGLV IGL+GG+ FSV++Q V PGA+++ LT +TGL E
Sbjct 142 DPIQRLVVPRVLASMFVAVLLNGLVITIGLTGGFLFSVYIQNVTPGAYVSSLTFVTGLPE 201
Query 190 LILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGV 249
+I++E+KA LFG++AGLV C+RGLTVKGGPK VG+AVNETVVYAF+ LF +NVV+TAIGV
Sbjct 202 VIISEVKATLFGLIAGLVACHRGLTVKGGPKSVGDAVNETVVYAFMALFAVNVVVTAIGV 261
Query 250 R 250
+
Sbjct 262 K 262
>gi|319948072|ref|ZP_08022243.1| hypothetical protein ES5_02019 [Dietzia cinnamea P4]
gi|319438260|gb|EFV93209.1| hypothetical protein ES5_02019 [Dietzia cinnamea P4]
Length=254
Score = 349 bits (895), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/247 (71%), Positives = 213/247 (87%), Gaps = 0/247 (0%)
Query 5 LAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAF 64
L P + +G FF M++DT + Q REF++Q+W +ARVS + T+LV+IPFTVLV+F
Sbjct 5 LDAPLKGIGEFFAMTLDTFVSFPSIVRQGREFIEQSWFIARVSTMATVLVAIPFTVLVSF 64
Query 65 TLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAM 124
TLNILLREIGAADLSGAG A G +TQ+GP+VTVL+VAGAGATAICADLGARTIREEIDAM
Sbjct 65 TLNILLREIGAADLSGAGAALGAVTQVGPMVTVLIVAGAGATAICADLGARTIREEIDAM 124
Query 125 RVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVL 184
VLGIDP++RLVVPRV AST VALLLNGLVC IG+ GG+ FSV LQGVNPGAF+NG+T+L
Sbjct 125 EVLGIDPVKRLVVPRVAASTFVALLLNGLVCTIGILGGFLFSVLLQGVNPGAFVNGITLL 184
Query 185 TGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVM 244
TGL ELILA+IKA +FG++AGLV CY+GL V+GGPK VG+AVNETVV+AF+CLFV+N V+
Sbjct 185 TGLGELILAQIKAGVFGMLAGLVACYKGLYVRGGPKEVGSAVNETVVFAFMCLFVVNTVI 244
Query 245 TAIGVRI 251
TA+GV++
Sbjct 245 TAVGVKV 251
>gi|343926111|ref|ZP_08765623.1| putative YrbE family protein [Gordonia alkanivorans NBRC 16433]
gi|343764037|dbj|GAA12549.1| putative YrbE family protein [Gordonia alkanivorans NBRC 16433]
Length=254
Score = 345 bits (884), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 174/253 (69%), Positives = 218/253 (87%), Gaps = 0/253 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
++ +LA P +G F + +++AR F RPFQ+RE ++Q+W +ARVS+VPTLLV+IPFTV
Sbjct 1 MLSKLATPLGGIGDFVALGVESARELFHRPFQWRETVEQSWAIARVSMVPTLLVAIPFTV 60
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LV+FTLNILLREIGA DLSGAG A GTITQ+GP+VTVL+VAGAGATAICADLGARTIREE
Sbjct 61 LVSFTLNILLREIGAQDLSGAGAALGTITQIGPIVTVLIVAGAGATAICADLGARTIREE 120
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAM+VLGI+PI RLVVPR++AST VALLLN LVC IG+ GG+ FSV+LQ VNPGAF+
Sbjct 121 IDAMKVLGINPIHRLVVPRIVASTCVALLLNSLVCTIGIGGGFIFSVYLQDVNPGAFVAN 180
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
LT+LTG EL+++ +KA LFG+ AG+VGCY+GL VKGG KGVG+AVNETVVY+F+ LFV+
Sbjct 181 LTLLTGFGELMISMVKAALFGLFAGMVGCYQGLNVKGGAKGVGDAVNETVVYSFMALFVV 240
Query 241 NVVMTAIGVRISA 253
NVV+TA+G++ +A
Sbjct 241 NVVVTAVGLKATA 253
>gi|262203811|ref|YP_003275019.1| hypothetical protein Gbro_3952 [Gordonia bronchialis DSM 43247]
gi|262087158|gb|ACY23126.1| protein of unknown function DUF140 [Gordonia bronchialis DSM
43247]
Length=254
Score = 345 bits (884), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 175/253 (70%), Positives = 218/253 (87%), Gaps = 0/253 (0%)
Query 1 LIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTV 60
++ +LA P +G F + +D+AR F RPFQ+RE ++Q+W +ARVS+VPTLLV+IPFTV
Sbjct 1 MLGKLATPLGGIGDFVALGVDSARELFHRPFQWRETVEQSWAIARVSMVPTLLVAIPFTV 60
Query 61 LVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREE 120
LV+FTLNILLREIGA DLSGAG A GTITQ+GP+VTVL+VAGAGATAICADLGARTIREE
Sbjct 61 LVSFTLNILLREIGAQDLSGAGAALGTITQIGPIVTVLIVAGAGATAICADLGARTIREE 120
Query 121 IDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFING 180
IDAM+VLGI+PI RLVVPR++AST VA+LLN LVC IG+ GG+ FSV+LQ VNPGAFI
Sbjct 121 IDAMKVLGINPIHRLVVPRIIASTGVAVLLNSLVCTIGIGGGFVFSVYLQDVNPGAFIAN 180
Query 181 LTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVI 240
LT+LTG EL+++ +KA LFG+ AG+VGCY+GL VKGG KGVG+AVNETVVY+F+ LFV+
Sbjct 181 LTLLTGFGELMISMVKAALFGLFAGMVGCYQGLNVKGGAKGVGDAVNETVVYSFMALFVV 240
Query 241 NVVMTAIGVRISA 253
NVV+TA+G++ +A
Sbjct 241 NVVVTAVGLKATA 253
>gi|145225118|ref|YP_001135796.1| hypothetical protein Mflv_4540 [Mycobacterium gilvum PYR-GCK]
gi|145217604|gb|ABP47008.1| protein of unknown function DUF140 [Mycobacterium gilvum PYR-GCK]
Length=270
Score = 345 bits (884), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 171/250 (69%), Positives = 212/250 (85%), Gaps = 1/250 (0%)
Query 5 LAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAF 64
++ P + +GG MS D + FRRPFQ EFL Q+W VARVSL PTLLV+IPFTVLV+F
Sbjct 20 MSTPMQGIGGLLSMSADAVKFLFRRPFQTSEFLLQSWFVARVSLAPTLLVAIPFTVLVSF 79
Query 65 TLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAM 124
TLNILL E+GAADLSGAG AFG +TQ+GP+VTVL+VAGAGATA+CADLG+RTIREEIDA+
Sbjct 80 TLNILLSELGAADLSGAGAAFGAVTQVGPMVTVLIVAGAGATAMCADLGSRTIREEIDAL 139
Query 125 RVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVL 184
VLGI+P+QRLV PR+LAS LVALLLN LV IG+ GGY FS+F+QGVNPGAF G+T+L
Sbjct 140 EVLGINPVQRLVTPRMLASGLVALLLNSLVVIIGIVGGYVFSIFVQGVNPGAFAAGITLL 199
Query 185 TGLRELILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVV 243
TG+ E+I++ +KA LFG++AGLV CYRGL++ GG K VGNAVNETVVYAF+ LFV+NVV
Sbjct 200 TGVPEVIISCVKAALFGLIAGLVACYRGLSISTGGAKAVGNAVNETVVYAFMALFVVNVV 259
Query 244 MTAIGVRISA 253
+TAIG+++++
Sbjct 260 VTAIGIQMTS 269
>gi|315445485|ref|YP_004078364.1| ABC transporter involved in resistance to organic solvents, permease
[Mycobacterium sp. Spyr1]
gi|315263788|gb|ADU00530.1| ABC-type transport system involved in resistance to organic solvents,
permease component [Mycobacterium sp. Spyr1]
Length=270
Score = 344 bits (882), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 171/250 (69%), Positives = 212/250 (85%), Gaps = 1/250 (0%)
Query 5 LAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAF 64
++ P + +GG MS D + FRRPFQ EFL Q+W VARVSL PTLLV+IPFTVLV+F
Sbjct 20 VSTPMQGIGGLLSMSADAVKFLFRRPFQTSEFLLQSWFVARVSLAPTLLVAIPFTVLVSF 79
Query 65 TLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAM 124
TLNILL E+GAADLSGAG AFG +TQ+GP+VTVL+VAGAGATA+CADLG+RTIREEIDA+
Sbjct 80 TLNILLSELGAADLSGAGAAFGAVTQVGPMVTVLIVAGAGATAMCADLGSRTIREEIDAL 139
Query 125 RVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVL 184
VLGI+P+QRLV PR+LAS LVALLLN LV IG+ GGY FS+F+QGVNPGAF G+T+L
Sbjct 140 EVLGINPVQRLVTPRMLASGLVALLLNSLVVIIGIVGGYVFSIFVQGVNPGAFAAGITLL 199
Query 185 TGLRELILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVV 243
TG+ E+I++ +KA LFG++AGLV CYRGL++ GG K VGNAVNETVVYAF+ LFV+NVV
Sbjct 200 TGVPEVIISCVKAALFGLIAGLVACYRGLSISTGGAKAVGNAVNETVVYAFMALFVVNVV 259
Query 244 MTAIGVRISA 253
+TAIG+++++
Sbjct 260 VTAIGIQMTS 269
>gi|333989350|ref|YP_004521964.1| hypothetical protein JDM601_0710 [Mycobacterium sp. JDM601]
gi|333485318|gb|AEF34710.1| integral membrane protein YrbE4a [Mycobacterium sp. JDM601]
Length=268
Score = 341 bits (875), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 179/254 (71%), Positives = 219/254 (87%), Gaps = 1/254 (0%)
Query 2 IQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVL 61
I +L+ P +AVGG F M++D R F+RPFQ REFL+Q+W VARVSL PTLLV+IPFTVL
Sbjct 15 IGRLSEPMQAVGGLFAMTVDAVRFLFKRPFQGREFLEQSWFVARVSLAPTLLVAIPFTVL 74
Query 62 VAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEI 121
V+F LNILLRE+GAADLSGAG AFG +TQ+GP+VTVL+VAGAGATA+CADLG+RTIREEI
Sbjct 75 VSFILNILLRELGAADLSGAGAAFGAVTQVGPMVTVLIVAGAGATAMCADLGSRTIREEI 134
Query 122 DAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGL 181
DAM VLGI+P+QRLV PR+LA+ LVALLLN LV IG+ GGY FSVF+Q VNPGAF G+
Sbjct 135 DAMEVLGINPVQRLVTPRMLAAGLVALLLNSLVVIIGILGGYVFSVFVQDVNPGAFAAGI 194
Query 182 TVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVI 240
T+LTG+ ELI++ IKA LFG++AG+V CYRGLT+ GG K VGNAVNETVVYAF+ LFV+
Sbjct 195 TLLTGVPELIISCIKAALFGLIAGMVACYRGLTISGGGAKAVGNAVNETVVYAFMSLFVV 254
Query 241 NVVMTAIGVRISAQ 254
NVV+TAIG++++A+
Sbjct 255 NVVVTAIGIKMTAR 268
>gi|254818326|ref|ZP_05223327.1| hypothetical protein MintA_00280 [Mycobacterium intracellulare
ATCC 13950]
Length=255
Score = 341 bits (874), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 175/248 (71%), Positives = 216/248 (88%), Gaps = 1/248 (0%)
Query 8 PARAVGGFFEMSMDTARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLN 67
PA+A+GG F MS D + F+RPFQ+REFL+Q+W +ARV++ PTLLV+IPFTVLV+FTLN
Sbjct 8 PAQAIGGLFAMSADAVKFLFQRPFQWREFLEQSWFIARVAIAPTLLVAIPFTVLVSFTLN 67
Query 68 ILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVL 127
ILLRE+GAADLSGAG AFG +TQ+GP+VTVL+VAGAG+TA+CADLG+RTIREEIDAM VL
Sbjct 68 ILLRELGAADLSGAGAAFGAVTQIGPMVTVLIVAGAGSTAMCADLGSRTIREEIDAMEVL 127
Query 128 GIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGL 187
GI+P+QRLV PR+LA+ LVALLLN LV IG+ GGYAFSVF+Q VNPGAF G+T+LTG+
Sbjct 128 GINPVQRLVTPRMLAAGLVALLLNSLVVIIGIVGGYAFSVFIQDVNPGAFAAGITLLTGV 187
Query 188 RELILAEIKALLFGVMAGLVGCYRGLTVK-GGPKGVGNAVNETVVYAFICLFVINVVMTA 246
E+I++ +KA LFG++AGLV CYRGLT+ GG K VGNAVNETVVYAF+ L V+NVV+TA
Sbjct 188 PEVIISCVKAALFGLIAGLVACYRGLTITGGGAKAVGNAVNETVVYAFMSLMVVNVVVTA 247
Query 247 IGVRISAQ 254
IG+R SA+
Sbjct 248 IGIRFSAK 255
Lambda K H
0.328 0.143 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 371539772520
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40