BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3503c Length=63 Score E Sequences producing significant alignments: (Bits) Value gi|15610639|ref|NP_218020.1| ferredoxin FdxD [Mycobacterium tube... 123 1e-26 gi|340628471|ref|YP_004746923.1| putative ferredoxin FDXD [Mycob... 119 2e-25 gi|41406658|ref|NP_959494.1| FdxD [Mycobacterium avium subsp. pa... 115 2e-24 gi|342862242|ref|ZP_08718884.1| ferredoxin [Mycobacterium colomb... 114 6e-24 gi|336458446|gb|EGO37420.1| ferredoxin [Mycobacterium avium subs... 112 2e-23 gi|296166537|ref|ZP_06848968.1| FdxD protein [Mycobacterium para... 111 4e-23 gi|118619256|ref|YP_907588.1| ferredoxin FdxD [Mycobacterium ulc... 107 7e-22 gi|240170059|ref|ZP_04748718.1| ferredoxin FdxD [Mycobacterium k... 104 4e-21 gi|118470081|ref|YP_890130.1| hypothetical protein MSMEG_5904 [M... 104 5e-21 gi|296170568|ref|ZP_06852152.1| FdxD family protein [Mycobacteri... 97.8 5e-19 gi|254774701|ref|ZP_05216217.1| FdxD [Mycobacterium avium subsp.... 94.7 4e-18 gi|145222144|ref|YP_001132822.1| hypothetical protein Mflv_1552 ... 94.7 4e-18 gi|315442583|ref|YP_004075462.1| ferredoxin [Mycobacterium sp. S... 94.0 6e-18 gi|183984959|ref|YP_001853250.1| ferredoxin FdxD [Mycobacterium ... 93.2 1e-17 gi|336458153|gb|EGO37136.1| ferredoxin [Mycobacterium avium subs... 92.0 3e-17 gi|254822198|ref|ZP_05227199.1| FdxD [Mycobacterium intracellula... 90.1 9e-17 gi|120406791|ref|YP_956620.1| FdxD [Mycobacterium vanbaalenii PY... 89.0 2e-16 gi|342860925|ref|ZP_08717574.1| FdxD [Mycobacterium colombiense ... 87.8 5e-16 gi|126437568|ref|YP_001073259.1| FdxD [Mycobacterium sp. JLS] >g... 84.7 4e-15 gi|108801584|ref|YP_641781.1| FdxD [Mycobacterium sp. MCS] >gi|1... 84.3 5e-15 gi|467121|gb|AAA17303.1| B229_C3_226 [Mycobacterium leprae] 83.2 1e-14 gi|119871405|ref|YP_941357.1| FdxD [Mycobacterium sp. KMS] >gi|1... 83.2 1e-14 gi|333992274|ref|YP_004524888.1| ferredoxin FdxD [Mycobacterium ... 80.5 7e-14 gi|108802252|ref|YP_642449.1| FdxD [Mycobacterium sp. MCS] >gi|1... 76.6 1e-12 gi|310752622|gb|ADP09633.1| ferredoxin [Rhodococcus rhodochrous] 68.2 4e-10 gi|312138206|ref|YP_004005542.1| ferredoxin [Rhodococcus equi 10... 68.2 4e-10 gi|226364203|ref|YP_002781985.1| 3Fe-4S ferredoxin [Rhodococcus ... 66.6 1e-09 gi|111021666|ref|YP_704638.1| ferredoxin [Rhodococcus jostii RHA... 66.6 1e-09 gi|54022500|ref|YP_116742.1| putative ferredoxin [Nocardia farci... 65.9 2e-09 gi|169631235|ref|YP_001704884.1| ferredoxin FdxD [Mycobacterium ... 65.5 2e-09 gi|118464563|ref|YP_881215.1| hypothetical protein MAV_1996 [Myc... 64.7 5e-09 gi|119717039|ref|YP_924004.1| hypothetical protein Noca_2815 [No... 63.9 7e-09 gi|108800662|ref|YP_640859.1| hypothetical protein Mmcs_3697 [My... 63.9 7e-09 gi|226304445|ref|YP_002764403.1| 3Fe-4S ferredoxin [Rhodococcus ... 63.9 7e-09 gi|319951245|ref|ZP_08025082.1| hypothetical protein ES5_16401 [... 63.2 1e-08 gi|326383101|ref|ZP_08204790.1| hypothetical protein SCNU_09191 ... 61.6 4e-08 gi|312196707|ref|YP_004016768.1| hypothetical protein FraEuI1c_2... 61.2 5e-08 gi|269784333|emb|CBH51368.1| ferredoxin [Amycolatopsis balhimyci... 60.5 8e-08 gi|300784330|ref|YP_003764621.1| ferredoxin [Amycolatopsis medit... 60.5 9e-08 gi|326331727|ref|ZP_08198015.1| conserved domain protein [Nocard... 58.9 3e-07 gi|145223065|ref|YP_001133743.1| hypothetical protein Mflv_2478 ... 58.5 3e-07 gi|288922125|ref|ZP_06416328.1| ferredoxin [Frankia sp. EUN1f] >... 58.5 3e-07 gi|240170426|ref|ZP_04749085.1| ferredoxin FdxD_2 [Mycobacterium... 58.2 5e-07 gi|118473592|ref|YP_889075.1| hypothetical protein MSMEG_4819 [M... 57.4 8e-07 gi|325001400|ref|ZP_08122512.1| hypothetical protein PseP1_21679... 57.4 8e-07 gi|15865466|emb|CAC81337.1| putative ferredoxin [Pseudomonas sp.... 55.8 2e-06 gi|342857421|ref|ZP_08714077.1| hypothetical protein MCOL_01055 ... 55.5 3e-06 gi|54023106|ref|YP_117348.1| putative ferredoxin [Nocardia farci... 55.5 3e-06 gi|302525557|ref|ZP_07277899.1| predicted protein [Streptomyces ... 55.1 3e-06 gi|288920235|ref|ZP_06414549.1| protein of unknown function DUF1... 55.1 3e-06 >gi|15610639|ref|NP_218020.1| ferredoxin FdxD [Mycobacterium tuberculosis H37Rv] gi|15843115|ref|NP_338152.1| ferredoxin [Mycobacterium tuberculosis CDC1551] gi|31794679|ref|NP_857172.1| ferredoxin FdxD [Mycobacterium bovis AF2122/97] 76 more sequence titles Length=63 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/63 (99%), Positives = 63/63 (100%), Gaps = 0/63 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS Sbjct 1 MRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 Query 61 RGE 63 RGE Sbjct 61 RGE 63 >gi|340628471|ref|YP_004746923.1| putative ferredoxin FDXD [Mycobacterium canettii CIPT 140010059] gi|340006661|emb|CCC45848.1| putative ferredoxin FDXD [Mycobacterium canettii CIPT 140010059] Length=63 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/63 (96%), Positives = 61/63 (97%), Gaps = 0/63 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIP DQEDLAEQAIAECPRAAL Sbjct 1 MRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPADQEDLAEQAIAECPRAALL 60 Query 61 RGE 63 RGE Sbjct 61 RGE 63 >gi|41406658|ref|NP_959494.1| FdxD [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466109|ref|YP_879933.1| hypothetical protein MAV_0653 [Mycobacterium avium 104] gi|254773609|ref|ZP_05215125.1| hypothetical protein MaviaA2_02890 [Mycobacterium avium subsp. avium ATCC 25291] gi|254822743|ref|ZP_05227744.1| hypothetical protein MintA_22629 [Mycobacterium intracellulare ATCC 13950] gi|41395007|gb|AAS02877.1| FdxD [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167396|gb|ABK68293.1| conserved domain protein [Mycobacterium avium 104] Length=63 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 58/63 (93%), Positives = 60/63 (96%), Gaps = 0/63 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVK DPIP DQE LAEQAIAECPRAALS Sbjct 1 MRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKLDPIPADQEQLAEQAIAECPRAALS 60 Query 61 RGE 63 RG+ Sbjct 61 RGD 63 >gi|342862242|ref|ZP_08718884.1| ferredoxin [Mycobacterium colombiense CECT 3035] gi|342130320|gb|EGT83640.1| ferredoxin [Mycobacterium colombiense CECT 3035] Length=63 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 57/63 (91%), Positives = 59/63 (94%), Gaps = 0/63 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVK DPIP DQE LAEQAIAECPRAAL Sbjct 1 MRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKLDPIPADQEQLAEQAIAECPRAALQ 60 Query 61 RGE 63 RG+ Sbjct 61 RGD 63 >gi|336458446|gb|EGO37420.1| ferredoxin [Mycobacterium avium subsp. paratuberculosis S397] Length=63 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 57/63 (91%), Positives = 59/63 (94%), Gaps = 0/63 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVK DPIP DQE LAEQAIAECPRAALS Sbjct 1 MRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKLDPIPADQEQLAEQAIAECPRAALS 60 Query 61 RGE 63 G+ Sbjct 61 CGD 63 >gi|296166537|ref|ZP_06848968.1| FdxD protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898149|gb|EFG77724.1| FdxD protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=63 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 55/63 (88%), Positives = 58/63 (93%), Gaps = 0/63 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RVIVD DRCEGNAVC+GIAPDIFDLDDEDYAVVK DPIP DQE LAEQAIAECPRAAL Sbjct 1 MRVIVDHDRCEGNAVCMGIAPDIFDLDDEDYAVVKLDPIPADQEHLAEQAIAECPRAALL 60 Query 61 RGE 63 RG+ Sbjct 61 RGD 63 >gi|118619256|ref|YP_907588.1| ferredoxin FdxD [Mycobacterium ulcerans Agy99] gi|118571366|gb|ABL06117.1| ferredoxin FdxD [Mycobacterium ulcerans Agy99] Length=82 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 57/61 (94%), Positives = 57/61 (94%), Gaps = 1/61 (1%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 VRVIVDRDRCEGNAVCLGIAPDIFDLDD DYAVVKTDPIP DQE LAEQAIAECPRAAL Sbjct 21 VRVIVDRDRCEGNAVCLGIAPDIFDLDD-DYAVVKTDPIPPDQEALAEQAIAECPRAALL 79 Query 61 R 61 R Sbjct 80 R 80 >gi|240170059|ref|ZP_04748718.1| ferredoxin FdxD [Mycobacterium kansasii ATCC 12478] Length=63 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 54/61 (89%), Positives = 56/61 (92%), Gaps = 0/61 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV VDRDRCEGNAVCLGIAPDIFDLDDEDYAVVK DPIP D+E LAEQAIAECPRAAL Sbjct 1 MRVKVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKLDPIPPDREALAEQAIAECPRAALL 60 Query 61 R 61 R Sbjct 61 R 61 >gi|118470081|ref|YP_890130.1| hypothetical protein MSMEG_5904 [Mycobacterium smegmatis str. MC2 155] gi|118171368|gb|ABK72264.1| conserved domain protein [Mycobacterium smegmatis str. MC2 155] Length=63 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 50/61 (82%), Positives = 57/61 (94%), Gaps = 0/61 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV VDRDRCEGNAVC+GIAPD+F+LDDEDYAVVK+DP+P DQEDLAEQA+ ECPRAAL Sbjct 1 MRVEVDRDRCEGNAVCVGIAPDLFELDDEDYAVVKSDPVPADQEDLAEQAVNECPRAALI 60 Query 61 R 61 R Sbjct 61 R 61 >gi|296170568|ref|ZP_06852152.1| FdxD family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894800|gb|EFG74525.1| FdxD family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=63 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 45/63 (72%), Positives = 55/63 (88%), Gaps = 0/63 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV+VDRDRCEGNA C+ IAP++F LDD++YAVV TDP+PV+QE L EQAI CPRAALS Sbjct 1 MRVVVDRDRCEGNAFCVNIAPEVFQLDDDEYAVVITDPVPVEQETLVEQAIEACPRAALS 60 Query 61 RGE 63 RG+ Sbjct 61 RGK 63 >gi|254774701|ref|ZP_05216217.1| FdxD [Mycobacterium avium subsp. avium ATCC 25291] Length=63 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 44/61 (73%), Positives = 53/61 (87%), Gaps = 0/61 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV+VDRDRCEGNA C+ IAP +F+LDD++YAVV TDP+P QE LAEQA+A CPRAALS Sbjct 1 MRVLVDRDRCEGNAFCVNIAPQVFELDDDEYAVVLTDPVPAGQEALAEQAVAACPRAALS 60 Query 61 R 61 R Sbjct 61 R 61 >gi|145222144|ref|YP_001132822.1| hypothetical protein Mflv_1552 [Mycobacterium gilvum PYR-GCK] gi|145214630|gb|ABP44034.1| hypothetical protein Mflv_1552 [Mycobacterium gilvum PYR-GCK] Length=83 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 45/61 (74%), Positives = 55/61 (91%), Gaps = 0/61 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV VDRDRCEGNAVC+GIAPD+F+LDD+DYAVVK DP+P +E +A+QA+AECPRAAL Sbjct 21 MRVEVDRDRCEGNAVCVGIAPDLFELDDDDYAVVKADPVPESEEAVADQAVAECPRAALI 80 Query 61 R 61 R Sbjct 81 R 81 >gi|315442583|ref|YP_004075462.1| ferredoxin [Mycobacterium sp. Spyr1] gi|315260886|gb|ADT97627.1| ferredoxin [Mycobacterium sp. Spyr1] Length=63 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 45/61 (74%), Positives = 55/61 (91%), Gaps = 0/61 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV VDRDRCEGNAVC+GIAPD+F+LDD+DYAVVK DP+P +E +A+QA+AECPRAAL Sbjct 1 MRVEVDRDRCEGNAVCVGIAPDLFELDDDDYAVVKADPVPESEEAVADQAVAECPRAALI 60 Query 61 R 61 R Sbjct 61 R 61 >gi|183984959|ref|YP_001853250.1| ferredoxin FdxD [Mycobacterium marinum M] gi|183178285|gb|ACC43395.1| ferredoxin FdxD [Mycobacterium marinum M] Length=82 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/61 (94%), Positives = 58/61 (96%), Gaps = 0/61 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 VRVIVDRDRCEGNAVCLGIAPDIFDLDD+DYAVVKTDPIP DQE LAEQAIAECPRAAL Sbjct 20 VRVIVDRDRCEGNAVCLGIAPDIFDLDDDDYAVVKTDPIPPDQEALAEQAIAECPRAALL 79 Query 61 R 61 R Sbjct 80 R 80 >gi|336458153|gb|EGO37136.1| ferredoxin [Mycobacterium avium subsp. paratuberculosis S397] Length=63 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 43/61 (71%), Positives = 53/61 (87%), Gaps = 0/61 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV+VDRDRCEGNA C+ IAP++F LDD++YAVV DP+P +Q LAEQAIA+CPRAALS Sbjct 1 MRVVVDRDRCEGNAFCVKIAPEMFQLDDDEYAVVIADPVPAEQTALAEQAIADCPRAALS 60 Query 61 R 61 R Sbjct 61 R 61 >gi|254822198|ref|ZP_05227199.1| FdxD [Mycobacterium intracellulare ATCC 13950] Length=59 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 42/57 (74%), Positives = 51/57 (90%), Gaps = 0/57 (0%) Query 5 VDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALSR 61 +DRDRCEGNA C+ IAPD+F+LDD++YAVV TDP+P +QE LAEQA+A CPRAALSR Sbjct 1 MDRDRCEGNAFCVNIAPDVFELDDDEYAVVLTDPVPPEQEALAEQAVAACPRAALSR 57 >gi|120406791|ref|YP_956620.1| FdxD [Mycobacterium vanbaalenii PYR-1] gi|119959609|gb|ABM16614.1| FdxD [Mycobacterium vanbaalenii PYR-1] Length=60 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/60 (72%), Positives = 53/60 (89%), Gaps = 0/60 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV VDRDRCEGNA C+ IAP++F LDD++YAVV DP+PV+QE LA+QAIA+CPRAALS Sbjct 1 MRVRVDRDRCEGNAFCVKIAPEVFQLDDDEYAVVIADPVPVEQEILADQAIADCPRAALS 60 >gi|342860925|ref|ZP_08717574.1| FdxD [Mycobacterium colombiense CECT 3035] gi|342131369|gb|EGT84639.1| FdxD [Mycobacterium colombiense CECT 3035] Length=63 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 42/61 (69%), Positives = 51/61 (84%), Gaps = 0/61 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +R +V+ DRCEGNA C+ IAPD+F LDD+DYAVV DP+P +QE L E+AIAECPRAALS Sbjct 1 MRPVVNLDRCEGNAYCVNIAPDVFRLDDDDYAVVIADPVPAEQEALVERAIAECPRAALS 60 Query 61 R 61 R Sbjct 61 R 61 >gi|126437568|ref|YP_001073259.1| FdxD [Mycobacterium sp. JLS] gi|126237368|gb|ABO00769.1| FdxD [Mycobacterium sp. JLS] Length=63 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/61 (82%), Positives = 56/61 (92%), Gaps = 0/61 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV VDRDRCEGNAVC+GIAPD+FDLDD+DYAVVK DP+P EDLAEQAIAECPRAAL+ Sbjct 1 MRVEVDRDRCEGNAVCVGIAPDLFDLDDDDYAVVKQDPVPAGMEDLAEQAIAECPRAALN 60 Query 61 R 61 R Sbjct 61 R 61 >gi|108801584|ref|YP_641781.1| FdxD [Mycobacterium sp. MCS] gi|119870738|ref|YP_940690.1| FdxD [Mycobacterium sp. KMS] gi|108772003|gb|ABG10725.1| FdxD [Mycobacterium sp. MCS] gi|119696827|gb|ABL93900.1| FdxD [Mycobacterium sp. KMS] Length=63 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/61 (81%), Positives = 57/61 (94%), Gaps = 0/61 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV VDRDRCEGNAVC+GIAPD+FDLDD+DYAVVK DP+P D ED+AEQ+IAECPRAAL+ Sbjct 1 MRVEVDRDRCEGNAVCVGIAPDLFDLDDDDYAVVKHDPVPADMEDVAEQSIAECPRAALN 60 Query 61 R 61 R Sbjct 61 R 61 >gi|467121|gb|AAA17303.1| B229_C3_226 [Mycobacterium leprae] Length=83 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/54 (76%), Positives = 44/54 (82%), Gaps = 0/54 (0%) Query 8 DRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALSR 61 DRCEGN VCLG D+FDLDDEDYAVV+TDP+ DQE AEQAIAEC RAAL R Sbjct 2 DRCEGNTVCLGRTSDVFDLDDEDYAVVRTDPVSSDQEVRAEQAIAECLRAALLR 55 >gi|119871405|ref|YP_941357.1| FdxD [Mycobacterium sp. KMS] gi|126438234|ref|YP_001073925.1| FdxD [Mycobacterium sp. JLS] gi|119697494|gb|ABL94567.1| FdxD [Mycobacterium sp. KMS] gi|126238034|gb|ABO01435.1| FdxD [Mycobacterium sp. JLS] Length=63 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 39/61 (64%), Positives = 50/61 (82%), Gaps = 0/61 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV+VD DRCEGNA+C+ IAP +F LDD++YA V DP+PV++E QAIA+CPRAALS Sbjct 1 MRVVVDSDRCEGNALCVRIAPAVFQLDDDEYATVVADPVPVEEEARVAQAIADCPRAALS 60 Query 61 R 61 R Sbjct 61 R 61 >gi|333992274|ref|YP_004524888.1| ferredoxin FdxD [Mycobacterium sp. JDM601] gi|333488242|gb|AEF37634.1| ferredoxin FdxD [Mycobacterium sp. JDM601] Length=64 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 39/61 (64%), Positives = 50/61 (82%), Gaps = 0/61 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV VD DRCEGNA+C+GI PD+F+L+D++ AVVK P+P ++E A QAIAECPRAAL Sbjct 1 MRVEVDLDRCEGNAICVGIDPDLFELNDDEQAVVKMAPVPAEREAHAMQAIAECPRAALR 60 Query 61 R 61 R Sbjct 61 R 61 >gi|108802252|ref|YP_642449.1| FdxD [Mycobacterium sp. MCS] gi|108772671|gb|ABG11393.1| FdxD [Mycobacterium sp. MCS] Length=59 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 36/57 (64%), Positives = 46/57 (81%), Gaps = 0/57 (0%) Query 5 VDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALSR 61 +D DRCEGNA+C+ IAP +F LDD++YA V DP+PV++E QAIA+CPRAALSR Sbjct 1 MDSDRCEGNALCVRIAPAVFQLDDDEYATVVADPVPVEEEARVAQAIADCPRAALSR 57 >gi|310752622|gb|ADP09633.1| ferredoxin [Rhodococcus rhodochrous] Length=61 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 44/60 (74%), Gaps = 1/60 (1%) Query 3 VIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALSRG 62 V VD DRCE N VC+G+APD+FDL+D+D +V T P+P ED +A+A+CPRAAL+ Sbjct 3 VKVDFDRCEANGVCVGLAPDVFDLNDDDELIV-THPVPEGSEDAVREAVAQCPRAALAEA 61 >gi|312138206|ref|YP_004005542.1| ferredoxin [Rhodococcus equi 103S] gi|325674888|ref|ZP_08154575.1| FdxD protein [Rhodococcus equi ATCC 33707] gi|311887545|emb|CBH46857.1| putative ferredoxin [Rhodococcus equi 103S] gi|325554474|gb|EGD24149.1| FdxD protein [Rhodococcus equi ATCC 33707] Length=62 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/60 (57%), Positives = 43/60 (72%), Gaps = 0/60 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 + V VDRDRCE N VC+GIAPDIFDLDD++ ++ P D+E AIA+CPRAAL+ Sbjct 1 MEVRVDRDRCEANGVCVGIAPDIFDLDDDEELIISAAVPPADREADVRSAIAQCPRAALT 60 >gi|226364203|ref|YP_002781985.1| 3Fe-4S ferredoxin [Rhodococcus opacus B4] gi|226242692|dbj|BAH53040.1| 3Fe-4S ferredoxin [Rhodococcus opacus B4] Length=63 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/60 (57%), Positives = 43/60 (72%), Gaps = 0/60 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 + V VD DRCE N VC+GIAPDIF+LDD+D + T P D+E+ AIA+CPRAAL+ Sbjct 1 MEVRVDFDRCEANGVCVGIAPDIFELDDDDQLHITTAVPPADREEDVRTAIAQCPRAALT 60 >gi|111021666|ref|YP_704638.1| ferredoxin [Rhodococcus jostii RHA1] gi|110821196|gb|ABG96480.1| possible ferredoxin [Rhodococcus jostii RHA1] Length=99 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/58 (57%), Positives = 42/58 (73%), Gaps = 0/58 (0%) Query 3 VIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 V VD DRCE N VC+GIAPDIF+LDD+D + + P D+E+ AIA+CPRAAL+ Sbjct 39 VRVDFDRCEANGVCVGIAPDIFELDDDDQLHISSAVPPADREEDVRTAIAQCPRAALT 96 >gi|54022500|ref|YP_116742.1| putative ferredoxin [Nocardia farcinica IFM 10152] gi|54014008|dbj|BAD55378.1| putative ferredoxin [Nocardia farcinica IFM 10152] Length=62 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/60 (49%), Positives = 43/60 (72%), Gaps = 0/60 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 ++V VD D+CE N +C+G APD+F+LDD+D + TD +P D+ E A+A+CP+AAL Sbjct 1 MKVSVDLDQCEANGICVGFAPDVFELDDDDQLHILTDEVPADRRAEVEDAVAQCPKAALK 60 >gi|169631235|ref|YP_001704884.1| ferredoxin FdxD [Mycobacterium abscessus ATCC 19977] gi|169243202|emb|CAM64230.1| Probable ferredoxin FdxD [Mycobacterium abscessus] Length=63 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/61 (69%), Positives = 50/61 (82%), Gaps = 0/61 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV V DRCEGN VCLGIAP++FD+DD+DY V+ + +P DQEDL EQAIAECPRAAL Sbjct 1 MRVGVVPDRCEGNLVCLGIAPEVFDVDDDDYVVILQEEVPADQEDLVEQAIAECPRAALI 60 Query 61 R 61 R Sbjct 61 R 61 >gi|118464563|ref|YP_881215.1| hypothetical protein MAV_1996 [Mycobacterium avium 104] gi|118165850|gb|ABK66747.1| conserved domain protein [Mycobacterium avium 104] Length=52 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/45 (67%), Positives = 38/45 (85%), Gaps = 0/45 (0%) Query 17 LGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALSR 61 + IAP++F LDD++YAVV DP+P +Q LAEQAIA+CPRAALSR Sbjct 1 MKIAPEVFQLDDDEYAVVIADPVPAEQTALAEQAIADCPRAALSR 45 >gi|119717039|ref|YP_924004.1| hypothetical protein Noca_2815 [Nocardioides sp. JS614] gi|119537700|gb|ABL82317.1| conserved hypothetical protein [Nocardioides sp. JS614] Length=63 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 43/60 (72%), Gaps = 0/60 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +++ VD D CE NA+C +APD+F+LDD+DY +KTD + D ++A+A CPRAALS Sbjct 1 MKIRVDYDLCESNALCEALAPDVFELDDDDYLQLKTDQTTPENIDAVKRAVAACPRAALS 60 >gi|108800662|ref|YP_640859.1| hypothetical protein Mmcs_3697 [Mycobacterium sp. MCS] gi|119869801|ref|YP_939753.1| hypothetical protein Mkms_3770 [Mycobacterium sp. KMS] gi|126436286|ref|YP_001071977.1| hypothetical protein Mjls_3710 [Mycobacterium sp. JLS] gi|108771081|gb|ABG09803.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119695890|gb|ABL92963.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126236086|gb|ABN99486.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=66 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 29/59 (50%), Positives = 41/59 (70%), Gaps = 0/59 (0%) Query 2 RVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 R+ VD CE N VC+GI P++FDLDDEDY V TD + + E+ ++A+ +CPR A+S Sbjct 4 RIEVDFGLCESNGVCMGIIPEVFDLDDEDYLHVLTDEVTPENEEQIKEAVRQCPRQAIS 62 >gi|226304445|ref|YP_002764403.1| 3Fe-4S ferredoxin [Rhodococcus erythropolis PR4] gi|226183560|dbj|BAH31664.1| 3Fe-4S ferredoxin [Rhodococcus erythropolis PR4] Length=63 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 0/60 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 + V VD DRCE N VC+GIAPDIFDLDD + V+ + P D+ + AIA+CPRAAL+ Sbjct 1 MEVRVDLDRCEANGVCVGIAPDIFDLDDNEELVISSVRPPEDRWEDVRSAIAQCPRAALT 60 >gi|319951245|ref|ZP_08025082.1| hypothetical protein ES5_16401 [Dietzia cinnamea P4] gi|319435101|gb|EFV90384.1| hypothetical protein ES5_16401 [Dietzia cinnamea P4] Length=63 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/60 (54%), Positives = 44/60 (74%), Gaps = 1/60 (1%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAV-VKTDPIPVDQEDLAEQAIAECPRAAL 59 +R+IVD DRCEG AVC+G+AP +F+L D+D V V D +P + E A +A+A+CP AAL Sbjct 1 MRIIVDPDRCEGQAVCVGLAPAVFELGDDDEVVRVIVDEVPEEHEKRARKAVAKCPMAAL 60 >gi|326383101|ref|ZP_08204790.1| hypothetical protein SCNU_09191 [Gordonia neofelifaecis NRRL B-59395] gi|326198237|gb|EGD55422.1| hypothetical protein SCNU_09191 [Gordonia neofelifaecis NRRL B-59395] Length=64 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/60 (47%), Positives = 40/60 (67%), Gaps = 0/60 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 + + D D CE NAVC+G+APD+F+LDD DY V+ D + + + Q +A CPR+ALS Sbjct 1 MHIKCDFDLCESNAVCVGMAPDVFELDDNDYLVILADDVAEARREEMRQVVASCPRSALS 60 >gi|312196707|ref|YP_004016768.1| hypothetical protein FraEuI1c_2872 [Frankia sp. EuI1c] gi|311228043|gb|ADP80898.1| hypothetical protein FraEuI1c_2872 [Frankia sp. EuI1c] Length=62 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/60 (47%), Positives = 40/60 (67%), Gaps = 0/60 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 ++V VD RC+G+A C IAPD+FD+DDE YA V +P + ED A +A+ CP A++ Sbjct 1 MKVTVDAQRCQGHARCALIAPDVFDIDDEGYATVLCAVVPAELEDRARRAVTNCPEGAIT 60 >gi|269784333|emb|CBH51368.1| ferredoxin [Amycolatopsis balhimycina DSM 5908] Length=63 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/59 (51%), Positives = 39/59 (67%), Gaps = 0/59 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAAL 59 + + VDR CE NAVCLG APDIFDLDD++ V++ +P DQ + AI CP+ AL Sbjct 1 MEIGVDRSLCEANAVCLGFAPDIFDLDDDEELVIRPGAVPDDQVERVSDAIKGCPKNAL 59 >gi|300784330|ref|YP_003764621.1| ferredoxin [Amycolatopsis mediterranei U32] gi|299793844|gb|ADJ44219.1| ferredoxin [Amycolatopsis mediterranei U32] gi|340525750|gb|AEK40955.1| ferredoxin [Amycolatopsis mediterranei S699] Length=63 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 28/55 (51%), Positives = 38/55 (70%), Gaps = 0/55 (0%) Query 5 VDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAAL 59 VDR CE NAVC+G+APD+FDLDDE+ V++ P+ DQ + A+ CP+ AL Sbjct 5 VDRQLCEANAVCVGLAPDVFDLDDEEELVIQPGPVLPDQVERVSVAVKTCPKNAL 59 >gi|326331727|ref|ZP_08198015.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] gi|325950526|gb|EGD42578.1| conserved domain protein [Nocardioidaceae bacterium Broad-1] Length=64 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/58 (49%), Positives = 39/58 (68%), Gaps = 0/58 (0%) Query 2 RVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAAL 59 +VIVD D CE N +C APD+F++DD+DY V+ + + D EQA+A CP+AAL Sbjct 3 KVIVDFDLCESNGMCEAFAPDVFEIDDDDYLQVEDPTVTDENRDRVEQAVAGCPKAAL 60 >gi|145223065|ref|YP_001133743.1| hypothetical protein Mflv_2478 [Mycobacterium gilvum PYR-GCK] gi|315443522|ref|YP_004076401.1| ferredoxin [Mycobacterium sp. Spyr1] gi|145215551|gb|ABP44955.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315261825|gb|ADT98566.1| ferredoxin [Mycobacterium sp. Spyr1] Length=66 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/59 (45%), Positives = 39/59 (67%), Gaps = 0/59 (0%) Query 2 RVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 ++ VD CE N VC+GI P++FDLD+EDY V D + + E ++A+ +CPR A+S Sbjct 4 KIEVDFGLCESNGVCMGIIPEVFDLDEEDYLHVLQDEVTPENEAQVKEAVRQCPRQAIS 62 >gi|288922125|ref|ZP_06416328.1| ferredoxin [Frankia sp. EUN1f] gi|288346527|gb|EFC80853.1| ferredoxin [Frankia sp. EUN1f] Length=62 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 38/60 (64%), Gaps = 0/60 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 ++V VD DRC G++ C + P++F L D+ +AVV D +P D E + A++ CP A+S Sbjct 1 MKVFVDEDRCCGHSTCCTLCPEVFSLSDDGFAVVTVDEVPPDFESVVHAAVSNCPEQAIS 60 >gi|240170426|ref|ZP_04749085.1| ferredoxin FdxD_2 [Mycobacterium kansasii ATCC 12478] Length=63 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/63 (43%), Positives = 41/63 (66%), Gaps = 0/63 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +R+ VD D CE NAVC+GIAP++F + D+D V + + E L +A+ +CPR A+S Sbjct 1 MRIEVDWDLCESNAVCMGIAPEVFRVGDDDMLTVLQPEVTPENEALVREAVRQCPRQAIS 60 Query 61 RGE 63 G+ Sbjct 61 LGD 63 >gi|118473592|ref|YP_889075.1| hypothetical protein MSMEG_4819 [Mycobacterium smegmatis str. MC2 155] gi|118174879|gb|ABK75775.1| conserved domain protein [Mycobacterium smegmatis str. MC2 155] Length=66 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 25/59 (43%), Positives = 38/59 (65%), Gaps = 0/59 (0%) Query 2 RVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 ++ VD CE N VC+G+ P++FDLD+EDY V +D + + E A+ +CPR A+S Sbjct 4 KIHVDLGLCESNGVCMGVIPEVFDLDEEDYLHVLSDEVTPENEARVRDAVRQCPRQAIS 62 >gi|325001400|ref|ZP_08122512.1| hypothetical protein PseP1_21679 [Pseudonocardia sp. P1] Length=63 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 41/60 (69%), Gaps = 0/60 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 ++VIVD DRCE NAVC+G AP++F++ D+DY + + P E+A+ CP+AA+S Sbjct 1 MKVIVDFDRCESNAVCMGAAPEVFEVRDDDYLYILDENPPEALRPKVEEAVRGCPKAAIS 60 >gi|15865466|emb|CAC81337.1| putative ferredoxin [Pseudomonas sp. KIE171] Length=64 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/62 (39%), Positives = 43/62 (70%), Gaps = 2/62 (3%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKT--DPIPVDQEDLAEQAIAECPRAA 58 ++V VD +RC+G+A C+ AP++F++DDE Y+ VK + +PV+ ++ ++A A CP A Sbjct 1 MKVTVDNNRCQGHARCVYFAPEVFEIDDEGYSRVKAGYETVPVELQESVKKACANCPELA 60 Query 59 LS 60 + Sbjct 61 IK 62 >gi|342857421|ref|ZP_08714077.1| hypothetical protein MCOL_01055 [Mycobacterium colombiense CECT 3035] gi|342134754|gb|EGT87920.1| hypothetical protein MCOL_01055 [Mycobacterium colombiense CECT 3035] Length=65 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/60 (42%), Positives = 37/60 (62%), Gaps = 0/60 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +++ VDR+ C+G++ C P++FD+DDE A V + IP ED A AIA CP A+ Sbjct 1 MKLHVDREMCQGHSRCHAAYPELFDIDDEGTAFVTVENIPPGWEDRAHNAIANCPERAIH 60 >gi|54023106|ref|YP_117348.1| putative ferredoxin [Nocardia farcinica IFM 10152] gi|54014614|dbj|BAD55984.1| putative ferredoxin [Nocardia farcinica IFM 10152] Length=64 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/59 (46%), Positives = 39/59 (67%), Gaps = 0/59 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAAL 59 +RV+VDRDRCEG+ +C +APD+F + D+D +TD + D+AE A+ CP AL Sbjct 1 MRVVVDRDRCEGHGMCEALAPDLFRVGDDDVVRPRTDTLGPADRDVAELAVDSCPVQAL 59 >gi|302525557|ref|ZP_07277899.1| predicted protein [Streptomyces sp. AA4] gi|302434452|gb|EFL06268.1| predicted protein [Streptomyces sp. AA4] Length=61 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/59 (45%), Positives = 39/59 (67%), Gaps = 2/59 (3%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAAL 59 + V VDR CE NAVC+G AP++FDLDD++ V+ P+ ++ + QA+ CP+ AL Sbjct 1 MEVSVDRSLCEANAVCVGFAPEVFDLDDDENLVIG--PVSEEEVERVSQAVTNCPKNAL 57 >gi|288920235|ref|ZP_06414549.1| protein of unknown function DUF1271 [Frankia sp. EUN1f] gi|288348339|gb|EFC82602.1| protein of unknown function DUF1271 [Frankia sp. EUN1f] Length=96 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 0/60 (0%) Query 1 VRVIVDRDRCEGNAVCLGIAPDIFDLDDEDYAVVKTDPIPVDQEDLAEQAIAECPRAALS 60 +RV+VD CE NA+C+GIAP +F+LDD DY V+ + D + A+A CP+ A+S Sbjct 33 MRVVVDFKLCESNALCVGIAPSVFELDDNDYLVILDEEPGEDLRADLKAAVAACPKQAIS 92 Lambda K H 0.319 0.140 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131230491224 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40