BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3539 Length=479 Score E Sequences producing significant alignments: (Bits) Value gi|15843151|ref|NP_338188.1| PPE family protein [Mycobacterium t... 952 0.0 gi|289572191|ref|ZP_06452418.1| PPE family protein [Mycobacteriu... 950 0.0 gi|289440968|ref|ZP_06430712.1| PPE family protein [Mycobacteriu... 949 0.0 gi|340628503|ref|YP_004746955.1| PPE family protein [Mycobacteri... 947 0.0 gi|289759695|ref|ZP_06519073.1| PPE family protein [Mycobacteriu... 922 0.0 gi|307086331|ref|ZP_07495444.1| PPE family protein [Mycobacteriu... 909 0.0 gi|308372578|ref|ZP_07429131.2| PPE family protein [Mycobacteriu... 631 9e-179 gi|240171670|ref|ZP_04750329.1| PE-PGRS family protein [Mycobact... 310 3e-82 gi|183984907|ref|YP_001853198.1| PE-PGRS family protein [Mycobac... 310 5e-82 gi|15841269|ref|NP_336306.1| PPE family protein [Mycobacterium t... 213 8e-53 gi|57116915|ref|YP_177839.1| PPE family protein [Mycobacterium t... 211 3e-52 gi|289443272|ref|ZP_06433016.1| PPE family protein [Mycobacteriu... 210 5e-52 gi|31792988|ref|NP_855481.1| PPE family protein [Mycobacterium b... 209 7e-52 gi|289574477|ref|ZP_06454704.1| PPE family protein [Mycobacteriu... 209 8e-52 gi|121637701|ref|YP_977924.1| PPE family protein [Mycobacterium ... 209 1e-51 gi|240173260|ref|ZP_04751918.1| PPE family protein [Mycobacteriu... 194 3e-47 gi|183981048|ref|YP_001849339.1| PPE family protein [Mycobacteri... 189 8e-46 gi|308231943|ref|ZP_07663959.1| PPE family protein [Mycobacteriu... 189 8e-46 gi|183981512|ref|YP_001849803.1| PPE family protein, PPE28 [Myco... 177 4e-42 gi|240168595|ref|ZP_04747254.1| PPE family protein, PPE28 [Mycob... 173 7e-41 gi|118617931|ref|YP_906263.1| PPE family protein [Mycobacterium ... 166 9e-39 gi|339298363|gb|AEJ50473.1| PPE family protein [Mycobacterium tu... 163 7e-38 gi|118616724|ref|YP_905056.1| PPE family protein [Mycobacterium ... 157 4e-36 gi|183984289|ref|YP_001852580.1| PPE family protein [Mycobacteri... 149 1e-33 gi|289442288|ref|ZP_06432032.1| PPE family protein [Mycobacteriu... 148 2e-33 gi|289749400|ref|ZP_06508778.1| LOW QUALITY PROTEIN: PPE family ... 146 7e-33 gi|240167983|ref|ZP_04746642.1| PPE family protein [Mycobacteriu... 144 2e-32 gi|41410037|ref|NP_962873.1| hypothetical protein MAP3939c [Myco... 144 4e-32 gi|308371787|ref|ZP_07426236.2| putative PPE family protein [Myc... 144 5e-32 gi|240173028|ref|ZP_04751686.1| PPE family protein [Mycobacteriu... 143 6e-32 gi|339297531|gb|AEJ49641.1| PPE family protein [Mycobacterium tu... 142 1e-31 gi|308370523|ref|ZP_07421870.2| PPE family protein [Mycobacteriu... 142 1e-31 gi|323720587|gb|EGB29665.1| PPE family protein [Mycobacterium tu... 142 1e-31 gi|15840292|ref|NP_335329.1| PPE family protein [Mycobacterium t... 142 1e-31 gi|326904903|gb|EGE51836.1| PPE family protein [Mycobacterium tu... 142 1e-31 gi|339293890|gb|AEJ46001.1| PPE family protein [Mycobacterium tu... 142 1e-31 gi|308397492|ref|ZP_07492512.2| PPE family protein [Mycobacteriu... 142 1e-31 gi|289573504|ref|ZP_06453731.1| PPE family protein [Mycobacteriu... 142 1e-31 gi|308370137|ref|ZP_07420419.2| PPE family protein [Mycobacteriu... 142 1e-31 gi|344218125|gb|AEM98755.1| PPE family protein [Mycobacterium tu... 141 2e-31 gi|306970504|ref|ZP_07483165.1| PPE family protein [Mycobacteriu... 141 2e-31 gi|253797231|ref|YP_003030232.1| PPE family protein [Mycobacteri... 141 2e-31 gi|340625336|ref|YP_004743788.1| ppe family protein [Mycobacteri... 141 2e-31 gi|289441685|ref|ZP_06431429.1| PPE family protein [Mycobacteriu... 141 2e-31 gi|57117066|ref|YP_177936.1| PPE family protein [Mycobacterium t... 141 2e-31 gi|15842720|ref|NP_337757.1| PPE family protein [Mycobacterium t... 141 2e-31 gi|306806111|ref|ZP_07442779.1| PPE family protein [Mycobacteriu... 141 2e-31 gi|254549250|ref|ZP_05139697.1| PPE family protein [Mycobacteriu... 141 2e-31 gi|340628120|ref|YP_004746572.1| PPE-family protein [Mycobacteri... 141 3e-31 gi|306779146|ref|ZP_07417483.1| PPE family protein [Mycobacteriu... 141 3e-31 >gi|15843151|ref|NP_338188.1| PPE family protein [Mycobacterium tuberculosis CDC1551] gi|31794715|ref|NP_857208.1| PPE family protein [Mycobacterium bovis AF2122/97] gi|57117123|ref|YP_177987.1| PPE family protein [Mycobacterium tuberculosis H37Rv] 41 more sequence titles Length=479 Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/479 (100%), Positives = 479/479 (100%), Gaps = 0/479 (0%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG Sbjct 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 Query 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW Sbjct 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 Query 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL Sbjct 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 Query 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFP 240 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFP Sbjct 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFP 240 Query 241 GTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSM 300 GTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSM Sbjct 241 GTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSM 300 Query 301 VIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYN 360 VIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYN Sbjct 301 VIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYN 360 Query 361 TSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTT 420 TSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTT Sbjct 361 TSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTT 420 Query 421 TTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW 479 TTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW Sbjct 421 TTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW 479 >gi|289572191|ref|ZP_06452418.1| PPE family protein [Mycobacterium tuberculosis K85] gi|339633537|ref|YP_004725179.1| PPE family protein [Mycobacterium africanum GM041182] gi|289536622|gb|EFD41200.1| PPE family protein [Mycobacterium tuberculosis K85] gi|339332893|emb|CCC28620.1| PPE family protein [Mycobacterium africanum GM041182] Length=479 Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/479 (99%), Positives = 478/479 (99%), Gaps = 0/479 (0%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG Sbjct 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 Query 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW Sbjct 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 Query 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL Sbjct 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 Query 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFP 240 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFP Sbjct 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFP 240 Query 241 GTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSM 300 GTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSM Sbjct 241 GTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSM 300 Query 301 VIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYN 360 VIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYN Sbjct 301 VIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYN 360 Query 361 TSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTT 420 TSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTT Sbjct 361 TSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTT 420 Query 421 TTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW 479 T YMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW Sbjct 421 TMYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW 479 >gi|289440968|ref|ZP_06430712.1| PPE family protein [Mycobacterium tuberculosis T46] gi|289571780|ref|ZP_06452007.1| PPE family protein [Mycobacterium tuberculosis T17] gi|289752252|ref|ZP_06511630.1| PPE family protein [Mycobacterium tuberculosis T92] gi|289755668|ref|ZP_06515046.1| PPE family protein [Mycobacterium tuberculosis EAS054] gi|289413887|gb|EFD11127.1| PPE family protein [Mycobacterium tuberculosis T46] gi|289545534|gb|EFD49182.1| PPE family protein [Mycobacterium tuberculosis T17] gi|289692839|gb|EFD60268.1| PPE family protein [Mycobacterium tuberculosis T92] gi|289696255|gb|EFD63684.1| PPE family protein [Mycobacterium tuberculosis EAS054] Length=479 Score = 949 bits (2452), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/479 (99%), Positives = 478/479 (99%), Gaps = 0/479 (0%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG Sbjct 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 Query 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW Sbjct 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 Query 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL Sbjct 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 Query 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFP 240 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFP Sbjct 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFP 240 Query 241 GTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSM 300 GTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSM Sbjct 241 GTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSM 300 Query 301 VIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYN 360 VIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYN Sbjct 301 VIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYN 360 Query 361 TSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTT 420 TSVV SQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTT Sbjct 361 TSVVNSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTT 420 Query 421 TTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW 479 TTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW Sbjct 421 TTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW 479 >gi|340628503|ref|YP_004746955.1| PPE family protein [Mycobacterium canettii CIPT 140010059] gi|340006693|emb|CCC45881.1| PPE family protein [Mycobacterium canettii CIPT 140010059] Length=479 Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/479 (99%), Positives = 476/479 (99%), Gaps = 0/479 (0%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG Sbjct 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 Query 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 PSSRMMAA AARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANR LVAW Sbjct 61 PSSRMMAALAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRTLVAW 120 Query 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL Sbjct 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 Query 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFP 240 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFP Sbjct 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFP 240 Query 241 GTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSM 300 GTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSM Sbjct 241 GTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSM 300 Query 301 VIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYN 360 VIDRELAYLA DPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYN Sbjct 301 VIDRELAYLATDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYN 360 Query 361 TSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTT 420 TSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTT Sbjct 361 TSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTT 420 Query 421 TTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW 479 TTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW Sbjct 421 TTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW 479 >gi|289759695|ref|ZP_06519073.1| PPE family protein [Mycobacterium tuberculosis T85] gi|289715259|gb|EFD79271.1| PPE family protein [Mycobacterium tuberculosis T85] Length=464 Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/464 (100%), Positives = 464/464 (100%), Gaps = 0/464 (0%) Query 16 MYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPSSRMMAAQAARHTG 75 MYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPSSRMMAAQAARHTG Sbjct 1 MYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPSSRMMAAQAARHTG 60 Query 76 WLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLAGSNVFGQNTPAIA 135 WLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLAGSNVFGQNTPAIA Sbjct 61 WLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLAGSNVFGQNTPAIA 120 Query 136 AAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRLGGEHSDSTNTELANP 195 AAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRLGGEHSDSTNTELANP Sbjct 121 AAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRLGGEHSDSTNTELANP 180 Query 196 SSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFPGTTPEVVSYPATIGV 255 SSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFPGTTPEVVSYPATIGV Sbjct 181 SSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFPGTTPEVVSYPATIGV 240 Query 256 LSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSMVIDRELAYLAIDPNA 315 LSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSMVIDRELAYLAIDPNA Sbjct 241 LSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSMVIDRELAYLAIDPNA 300 Query 316 PPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYNTSVVYSQYDIWADPP 375 PPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYNTSVVYSQYDIWADPP Sbjct 301 PPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYNTSVVYSQYDIWADPP 360 Query 376 DRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTTTTYMIPSPTLPLLLP 435 DRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTTTTYMIPSPTLPLLLP Sbjct 361 DRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTTTTYMIPSPTLPLLLP 420 Query 436 LKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW 479 LKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW Sbjct 421 LKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW 464 >gi|307086331|ref|ZP_07495444.1| PPE family protein [Mycobacterium tuberculosis SUMu012] gi|308364217|gb|EFP53068.1| PPE family protein [Mycobacterium tuberculosis SUMu012] gi|323717733|gb|EGB26931.1| PPE family protein [Mycobacterium tuberculosis CDC1551A] Length=506 Score = 909 bits (2348), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/461 (99%), Positives = 460/461 (99%), Gaps = 0/461 (0%) Query 19 GGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPSSRMMAAQAARHTGWLA 78 G GPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPSSRMMAAQAARHTGWLA Sbjct 46 GWGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPSSRMMAAQAARHTGWLA 105 Query 79 AAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLAGSNVFGQNTPAIAAAE 138 AAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLAGSNVFGQNTPAIAAAE Sbjct 106 AAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLAGSNVFGQNTPAIAAAE 165 Query 139 AIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRLGGEHSDSTNTELANPSST 198 AIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRLGGEHSDSTNTELANPSST Sbjct 166 AIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRLGGEHSDSTNTELANPSST 225 Query 199 TTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFPGTTPEVVSYPATIGVLSG 258 TTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFPGTTPEVVSYPATIGVLSG Sbjct 226 TTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFPGTTPEVVSYPATIGVLSG 285 Query 259 SLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPS 318 SLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPS Sbjct 286 SLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPS 345 Query 319 SALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYNTSVVYSQYDIWADPPDRP 378 SALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYNTSVVYSQYDIWADPPDRP Sbjct 346 SALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYNTSVVYSQYDIWADPPDRP 405 Query 379 WNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTTTTYMIPSPTLPLLLPLKQ 438 WNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTTTTYMIPSPTLPLLLPLKQ Sbjct 406 WNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTTTTYMIPSPTLPLLLPLKQ 465 Query 439 IGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW 479 IGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW Sbjct 466 IGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLVW 506 >gi|308372578|ref|ZP_07429131.2| PPE family protein [Mycobacterium tuberculosis SUMu004] gi|308332756|gb|EFP21607.1| PPE family protein [Mycobacterium tuberculosis SUMu004] Length=314 Score = 631 bits (1627), Expect = 9e-179, Method: Compositional matrix adjust. Identities = 313/314 (99%), Positives = 314/314 (100%), Gaps = 0/314 (0%) Query 166 LRPWQQLLHELPRRLGGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAA 225 +RPWQQLLHELPRRLGGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAA Sbjct 1 MRPWQQLLHELPRRLGGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAA 60 Query 226 RYAELNTAIGTNWFPGTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATA 285 RYAELNTAIGTNWFPGTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATA Sbjct 61 RYAELNTAIGTNWFPGTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATA 120 Query 286 SGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIP 345 SGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIP Sbjct 121 SGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIP 180 Query 346 IAGYTVGNAPESQYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQ 405 IAGYTVGNAPESQYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQ Sbjct 181 IAGYTVGNAPESQYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQ 240 Query 406 GIEIAAVTSSLGGTTTTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYA 465 GIEIAAVTSSLGGTTTTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYA Sbjct 241 GIEIAAVTSSLGGTTTTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYA 300 Query 466 PTAGPYFSHGNLVW 479 PTAGPYFSHGNLVW Sbjct 301 PTAGPYFSHGNLVW 314 >gi|240171670|ref|ZP_04750329.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478] Length=462 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 158/296 (54%), Positives = 208/296 (71%), Gaps = 18/296 (6%) Query 201 RITVPGASPVH---AATLLPFIGRLLAAR-------------YAELNTAIGTNWFPGTTP 244 RITVPGA P++ T LP++G++L Y LN AIG NWFPGTT Sbjct 142 RITVPGAGPLYYPNFITTLPYLGQVLLQGGVPGPSSVSILQGYELLNHAIGQNWFPGTTA 201 Query 245 EVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATA--SGQPVTVAGLSMGSMVI 302 ++V+YPA+IG+LSGSL A N ++A+GQ+ L+++I+ A A SG PV +AGLS G++V+ Sbjct 202 QLVNYPASIGILSGSLAAPTTNDAVAMGQRALNDQIMNAFANGSGSPVHIAGLSEGTIVV 261 Query 303 DRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPESQYNTS 362 +RELAYLA +P+APP AL F + PE GLA YLP G T+P+ YTV P +QY+ S Sbjct 262 NRELAYLAANPSAPPPHALQFAMFSSPELGLANIYLPNGMTVPLINYTVQGLPNTQYDVS 321 Query 363 VVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTTTT 422 VVY QYD W +PPDRPWNL A N+L GAAY+H+ + A+ +++++ T+SLGG TT Sbjct 322 VVYGQYDFWGNPPDRPWNLPAAVNSLFGAAYYHNTASLASLSDAVQVSSTTTSLGGAITT 381 Query 423 YMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNLV 478 YMIP+PTLP+LLPLK IGVP IV LN+VL+P+V+ GYS P AGPYFSHG+LV Sbjct 382 YMIPAPTLPMLLPLKDIGVPQPIVDTLNSVLQPIVNDGYSSLTPDAGPYFSHGSLV 437 >gi|183984907|ref|YP_001853198.1| PE-PGRS family protein [Mycobacterium marinum M] gi|183178233|gb|ACC43343.1| PE-PGRS family protein [Mycobacterium marinum M] Length=463 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 162/301 (54%), Positives = 207/301 (69%), Gaps = 17/301 (5%) Query 195 PSSTTTRITVPGASPVH---AATLLPFIGRLLA------------ARYAELNTAIGTNWF 239 P++ TRITVPGA P++ T LP++G+ L Y +N AIG NWF Sbjct 138 PAAAGTRITVPGAGPLYYPRFLTELPYLGQALLLGIPGPSSASILQGYDLINHAIGENWF 197 Query 240 PGTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAAT--ASGQPVTVAGLSM 297 P T V++YPA+IG+LSGSL A D N ++AIG +MLH +I++A SG PV VA LS Sbjct 198 PDTIASVINYPASIGILSGSLAAPDTNTAVAIGARMLHEQIMSAVTNGSGLPVHVATLSQ 257 Query 298 GSMVIDRELAYLAIDPNAPPSSALTFVELAGPERGLAQTYLPVGTTIPIAGYTVGNAPES 357 G++V +RELAYLA DPNAPP+ AL F PE GLA YLP G T+P+ YTV + Sbjct 258 GTIVANRELAYLATDPNAPPAHALEFALFGSPELGLAHIYLPDGLTVPLINYTVHGLSNT 317 Query 358 QYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLG 417 QY+ SVV QYD W +PPDRPWNL A N+L GAAY+H+ +++A+ +E+++VT+SLG Sbjct 318 QYDVSVVNGQYDFWGNPPDRPWNLPAWVNSLFGAAYYHNTSSFASLSDAVEVSSVTTSLG 377 Query 418 GTTTTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYSQYAPTAGPYFSHGNL 477 GT TTY+IPSPTLP+LLPL+QIGVP IV GLN+VL P+V+ GYS P AGPYFS G L Sbjct 378 GTITTYLIPSPTLPMLLPLEQIGVPAPIVAGLNSVLAPIVNDGYSSLTPNAGPYFSQGAL 437 Query 478 V 478 V Sbjct 438 V 438 >gi|15841269|ref|NP_336306.1| PPE family protein [Mycobacterium tuberculosis CDC1551] gi|254231984|ref|ZP_04925311.1| PPE family protein [Mycobacterium tuberculosis C] gi|254364631|ref|ZP_04980677.1| PPE family protein [Mycobacterium tuberculosis str. Haarlem] gi|13881497|gb|AAK46120.1| PPE family protein [Mycobacterium tuberculosis CDC1551] gi|124601043|gb|EAY60053.1| PPE family protein [Mycobacterium tuberculosis C] gi|134150145|gb|EBA42190.1| PPE family protein [Mycobacterium tuberculosis str. Haarlem] gi|323719678|gb|EGB28799.1| PPE family protein [Mycobacterium tuberculosis CDC1551A] Length=655 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 182/487 (38%), Positives = 249/487 (52%), Gaps = 45/487 (9%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 + +F L PEVNSAR++AG G + AAAAAWD+LA+EL AA SF SV SGL WWQG Sbjct 2 LPNFAVLPPEVNSARVFAGAGSAPMLAAAAAWDDLASELHCAAMSFGSVTSGLVVGWWQG 61 Query 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 +S M AA + GWL+ +A AEGAA A+ +E A AATVHPA+VAANRA VA Sbjct 62 SASAAMVDAAASYIGWLSTSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVAS 121 Query 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 L SN+FGQN PAIAA E++YE MWAQDV AM Y+ ASAV +L W Q L +P Sbjct 122 LVASNLFGQNAPAIAALESLYECMWAQDVAAMAGYYVGASAVATQLASWLQRLQSIP--- 178 Query 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLL--------AARYAELNT 232 G D+ A R ++ A +G ++ +ARY EL Sbjct 179 GAASLDARLPSSAEAPMGVVRAVN--SAIAANAAAAQTVGLVMGGSGTPIPSARYVELAN 236 Query 233 AIGTNWFPGTTPEVVS---------YPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAA 283 A+ + G+ P V++ YP + + + + S+A G +L + I Sbjct 237 AL---YMSGSVPGVIAQALFTPQGLYPVVV------IKNLTFDSSVAQGAVILESAIRQQ 287 Query 284 TASGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPSSALTFVELAGPE--RGLAQTYLPVG 341 A+G VTV G S + + +A LA + P L+F + P G T P G Sbjct 288 IAAGNNVTVFGYSQSATISSLVMANLAASADPPSPDELSFTLIGNPNNPNGGVATRFP-G 346 Query 342 TTIPIAGYT-VGNAPESQYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAY 400 + P G T G P + Y T + +YD AD P P N ++ NA+ G Y H Sbjct 347 ISFPSLGVTATGATPHNLYPTKIYTIEYDGVADFPRYPLNFVSTLNAIAGTYYVHSNYFI 406 Query 401 AAPQQGIEIAAVTSSLGGTTTT-YMIPSPTLPLLLPLKQIGVPDWIVGG-LNNVLKP--- 455 P+Q +T+++G T T Y+I + LPLL PL+ + IVG L N+++P Sbjct 407 LTPEQIDAAVPLTNTVGPTMTQYYIIRTENLPLLEPLRSVP----IVGNPLANLVQPNLK 462 Query 456 -LVDAGY 461 +V+ GY Sbjct 463 VIVNLGY 469 >gi|57116915|ref|YP_177839.1| PPE family protein [Mycobacterium tuberculosis H37Rv] gi|148661606|ref|YP_001283129.1| PPE family protein [Mycobacterium tuberculosis H37Ra] gi|148823014|ref|YP_001287768.1| PPE family protein [Mycobacterium tuberculosis F11] 43 more sequence titles Length=655 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 181/487 (38%), Positives = 248/487 (51%), Gaps = 45/487 (9%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 + +F L PEVNSAR++AG G + AAAAAWD+LA+EL AA SF SV SGL WWQG Sbjct 2 LPNFAVLPPEVNSARVFAGAGSAPMLAAAAAWDDLASELHCAAMSFGSVTSGLVVGWWQG 61 Query 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 +S M AA + GWL+ +A AEGAA A+ +E A AATVHPA+VAANRA VA Sbjct 62 SASAAMVDAAASYIGWLSTSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVAS 121 Query 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 L SN+FGQN PAIAA E++YE MWAQD AM Y+ ASAV +L W Q L +P Sbjct 122 LVASNLFGQNAPAIAALESLYECMWAQDAAAMAGYYVGASAVATQLASWLQRLQSIP--- 178 Query 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLL--------AARYAELNT 232 G D+ A R ++ A +G ++ +ARY EL Sbjct 179 GAASLDARLPSSAEAPMGVVRAVN--SAIAANAAAAQTVGLVMGGSGTPIPSARYVELAN 236 Query 233 AIGTNWFPGTTPEVVS---------YPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAA 283 A+ + G+ P V++ YP + + + + S+A G +L + I Sbjct 237 AL---YMSGSVPGVIAQALFTPQGLYPVVV------IKNLTFDSSVAQGAVILESAIRQQ 287 Query 284 TASGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPSSALTFVELAGPE--RGLAQTYLPVG 341 A+G VTV G S + + +A LA + P L+F + P G T P G Sbjct 288 IAAGNNVTVFGYSQSATISSLVMANLAASADPPSPDELSFTLIGNPNNPNGGVATRFP-G 346 Query 342 TTIPIAGYT-VGNAPESQYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAY 400 + P G T G P + Y T + +YD AD P P N ++ NA+ G Y H Sbjct 347 ISFPSLGVTATGATPHNLYPTKIYTIEYDGVADFPRYPLNFVSTLNAIAGTYYVHSNYFI 406 Query 401 AAPQQGIEIAAVTSSLGGTTTT-YMIPSPTLPLLLPLKQIGVPDWIVGG-LNNVLKP--- 455 P+Q +T+++G T T Y+I + LPLL PL+ + IVG L N+++P Sbjct 407 LTPEQIDAAVPLTNTVGPTMTQYYIIRTENLPLLEPLRSVP----IVGNPLANLVQPNLK 462 Query 456 -LVDAGY 461 +V+ GY Sbjct 463 VIVNLGY 469 >gi|289443272|ref|ZP_06433016.1| PPE family protein [Mycobacterium tuberculosis T46] gi|289447415|ref|ZP_06437159.1| PPE family protein [Mycobacterium tuberculosis CPHL_A] gi|289750370|ref|ZP_06509748.1| PPE family protein [Mycobacterium tuberculosis T92] gi|289753895|ref|ZP_06513273.1| PPE family protein [Mycobacterium tuberculosis EAS054] gi|289416191|gb|EFD13431.1| PPE family protein [Mycobacterium tuberculosis T46] gi|289420373|gb|EFD17574.1| PPE family protein [Mycobacterium tuberculosis CPHL_A] gi|289690957|gb|EFD58386.1| PPE family protein [Mycobacterium tuberculosis T92] gi|289694482|gb|EFD61911.1| PPE family protein [Mycobacterium tuberculosis EAS054] Length=655 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 181/487 (38%), Positives = 248/487 (51%), Gaps = 45/487 (9%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 + +F L PEVNSAR++AG G + AAAAAWD+LA+EL AA SF SV SGL WWQG Sbjct 2 LPNFAVLPPEVNSARVFAGAGSAPMLAAAAAWDDLASELHCAAMSFGSVTSGLVVGWWQG 61 Query 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 +S M AA + GWL+ +A AEGAA A+ +E A AATVHPA+VAANRA VA Sbjct 62 SASAAMVDAAASYIGWLSTSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVAS 121 Query 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 L SN+FGQN PAIAA E++YE MWAQD AM Y+ ASAV +L W Q L +P Sbjct 122 LVASNLFGQNAPAIAALESLYEWMWAQDAAAMAGYYVGASAVATQLASWLQRLQSIP--- 178 Query 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLL--------AARYAELNT 232 G D+ A R ++ A +G ++ +ARY EL Sbjct 179 GAASLDARLPSSAEAPMGVVRAVN--SAIAANAAAAQTVGLVMGGSGTPIPSARYVELAN 236 Query 233 AIGTNWFPGTTPEVVS---------YPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAA 283 A+ + G+ P V++ YP + + + + S+A G +L + I Sbjct 237 AL---YMSGSVPGVIAQALFTPQGLYPVVV------IKNLTFDSSVAQGAVILESAIRQQ 287 Query 284 TASGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPSSALTFVELAGPE--RGLAQTYLPVG 341 A+G VTV G S + + +A LA + P L+F + P G T P G Sbjct 288 IAAGNNVTVFGYSQSATISSLVMANLAASADPPSPDELSFTLIGNPNNPNGGVATRFP-G 346 Query 342 TTIPIAGYT-VGNAPESQYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAY 400 + P G T G P + Y T + +YD AD P P N ++ NA+ G Y H Sbjct 347 ISFPSLGVTATGATPHNLYPTKIYTIEYDGVADFPRYPLNFVSTLNAIAGTYYVHSNYFI 406 Query 401 AAPQQGIEIAAVTSSLGGTTTT-YMIPSPTLPLLLPLKQIGVPDWIVGG-LNNVLKP--- 455 P+Q +T+++G T T Y+I + LPLL PL+ + IVG L N+++P Sbjct 407 LTPEQIDAAVPLTNTVGPTMTQYYIIRTENLPLLEPLRSVP----IVGNPLANLVQPNLK 462 Query 456 -LVDAGY 461 +V+ GY Sbjct 463 VIVNLGY 469 >gi|31792988|ref|NP_855481.1| PPE family protein [Mycobacterium bovis AF2122/97] gi|31618579|emb|CAD94531.1| PPE FAMILY PROTEIN [Mycobacterium bovis AF2122/97] Length=655 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 181/487 (38%), Positives = 248/487 (51%), Gaps = 45/487 (9%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 + +F L PEVNSAR++AG G + AAAAAWD+LA+EL AA SF SV SGL WWQG Sbjct 2 LPNFAVLPPEVNSARVFAGAGSAPMLAAAAAWDDLASELHCAAMSFGSVTSGLVVGWWQG 61 Query 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 +S M AA + GWL+ +A AEGAA A+ +E A AATVHPA+VAANRA VA Sbjct 62 SASAAMVDAAASYIGWLSTSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVAS 121 Query 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 L SN+FGQN PAIAA E++YE MWAQD AM Y+ ASAV +L W Q L +P Sbjct 122 LVASNLFGQNAPAIAALESLYEWMWAQDAAAMAGYYVGASAVATQLASWLQRLQSIP--- 178 Query 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLL--------AARYAELNT 232 G D+ A R ++ A +G ++ +ARY EL Sbjct 179 GAASLDARLPSSAEAPMGVVRAVN--SAIAANAAAAQTVGLVMGGSGTPIPSARYVELAN 236 Query 233 AIGTNWFPGTTPEVVS---------YPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAA 283 A+ + G+ P V++ YP + + + + S+A G +L + I Sbjct 237 AL---YMSGSVPGVIAQALVTPQGLYPVVV------IKNLTFDSSVAQGAVILESAIRQQ 287 Query 284 TASGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPSSALTFVELAGPE--RGLAQTYLPVG 341 A+G VTV G S + + +A LA + P L+F + P G T P G Sbjct 288 IAAGNNVTVFGYSQSATISSLVMANLAASADPPSPDELSFTLIGNPNNPNGGVATRFP-G 346 Query 342 TTIPIAGYT-VGNAPESQYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAY 400 + P G T G P + Y T + +YD AD P P N ++ NA+ G Y H Sbjct 347 ISFPSLGVTATGATPHNLYPTKIYTIEYDGVADFPRYPLNFVSTLNAIAGTYYVHSNYFI 406 Query 401 AAPQQGIEIAAVTSSLGGTTTT-YMIPSPTLPLLLPLKQIGVPDWIVGG-LNNVLKP--- 455 P+Q +T+++G T T Y+I + LPLL PL+ + IVG L N+++P Sbjct 407 LTPEQIDAAVPLTNTVGPTMTQYYIIRTENLPLLEPLRSVP----IVGNPLANLVQPNLK 462 Query 456 -LVDAGY 461 +V+ GY Sbjct 463 VIVNLGY 469 >gi|289574477|ref|ZP_06454704.1| PPE family protein [Mycobacterium tuberculosis K85] gi|339631854|ref|YP_004723496.1| PPE family protein [Mycobacterium africanum GM041182] gi|289538908|gb|EFD43486.1| PPE family protein [Mycobacterium tuberculosis K85] gi|339331210|emb|CCC26892.1| PPE family protein [Mycobacterium africanum GM041182] Length=655 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 181/487 (38%), Positives = 248/487 (51%), Gaps = 45/487 (9%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 + +F L PEVNSAR++AG G + AAAAAWD+LA+EL AA SF SV SGL WWQG Sbjct 2 LPNFAVLPPEVNSARVFAGAGSAPMLAAAAAWDDLASELHCAAMSFGSVTSGLVVGWWQG 61 Query 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 +S M AA + GWL+ +A AEGAA A+ +E A AATVHPA+VAANRA VA Sbjct 62 SASAAMVDAAASYIGWLSTSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVAS 121 Query 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 L SN+FGQN PAIAA E++YE MWAQD AM Y+ ASAV +L W Q L +P Sbjct 122 LVASNLFGQNAPAIAALESLYEWMWAQDAAAMAGYYVGASAVATQLASWLQRLQSIP--- 178 Query 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLL--------AARYAELNT 232 G D+ A R ++ A +G ++ +ARY EL Sbjct 179 GAASLDARLPSSAEAPMGVVRAVN--SAIAANAAAAQTVGLVMGGSGTPIPSARYVELAN 236 Query 233 AIGTNWFPGTTPEVVS---------YPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAA 283 A+ + G+ P V++ YP + + + + S+A G +L + I Sbjct 237 AL---YMSGSVPGVIAQALVTPQGLYPVVV------IKNLTFDSSVAQGAVILESAIRQQ 287 Query 284 TASGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPSSALTFVELAGPE--RGLAQTYLPVG 341 A+G VTV G S + + +A LA + P L+F + P G T P G Sbjct 288 IAAGNNVTVFGYSQSATISSLVMANLAASADPPSPDELSFTLIGNPNNPNGGVATRFP-G 346 Query 342 TTIPIAGYT-VGNAPESQYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAY 400 + P G T G P + Y T + +YD AD P P N ++ NA+ G Y H Sbjct 347 ISFPSLGVTATGATPHNLYPTKIYTIEYDGVADFPRYPLNFVSTLNAIAGTYYVHSNYFI 406 Query 401 AAPQQGIEIAAVTSSLGGTTTT-YMIPSPTLPLLLPLKQIGVPDWIVGG-LNNVLKP--- 455 P+Q +T+++G T T Y+I + LPLL PL+ + IVG L N+++P Sbjct 407 LTPEQIDAAVPLTNTVGPTMTQYYIIRTENLPLLEPLRSVP----IVGNPLANLVQPNLK 462 Query 456 -LVDAGY 461 +V+ GY Sbjct 463 VIVNLGY 469 >gi|121637701|ref|YP_977924.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990185|ref|YP_002644872.1| PPE family protein [Mycobacterium bovis BCG str. Tokyo 172] gi|121493348|emb|CAL71819.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773298|dbj|BAH26104.1| PPE family protein [Mycobacterium bovis BCG str. Tokyo 172] gi|341601728|emb|CCC64401.1| PPE family protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=655 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 180/487 (37%), Positives = 248/487 (51%), Gaps = 45/487 (9%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 + +F L PEVNSAR++AG G + AAAAAWD+LA+EL AA SF SV SGL WWQG Sbjct 2 LPNFAVLPPEVNSARVFAGAGSAPMLAAAAAWDDLASELHCAAMSFGSVTSGLVVGWWQG 61 Query 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 +S M AA + GWL+ +A AEGAA A+ +E A AATVHPA+VAANRA VA Sbjct 62 SASAAMVDAAASYIGWLSTSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVAS 121 Query 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 L SN+FGQN PAIAA E++YE MWAQD AM Y+ ASAV +L W Q L +P Sbjct 122 LVASNLFGQNAPAIAALESLYEWMWAQDAAAMAGYYVGASAVATQLASWLQRLQSIP--- 178 Query 181 GGEHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLL--------AARYAELNT 232 G D+ A R ++ A +G ++ +ARY EL Sbjct 179 GAASLDARLPSSAEAPMGVVRAVN--SAIAANAAAAQTVGLVMGGSGTPIPSARYVELAN 236 Query 233 AIGTNWFPGTTPEVVS---------YPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAA 283 A+ + G+ P V++ YP + + + + S+A G +L + I Sbjct 237 AL---YMSGSVPGVIAQALVTPQGLYPVVV------IKNLTFDSSVAQGAVILESAIRQQ 287 Query 284 TASGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPSSALTFVELAGPE--RGLAQTYLPVG 341 A+G VTV G S + + +A LA + P L+F + P G T P G Sbjct 288 IAAGNNVTVFGYSQSATISSLVMANLAASADPPSPDELSFTLIGNPNNPNGGVATRFP-G 346 Query 342 TTIPIAGYT-VGNAPESQYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAY 400 + P G T G P + Y T + +YD AD P P N ++ NA+ G Y H Sbjct 347 ISFPSLGVTATGATPHNLYPTKIYTIEYDGVADFPRYPLNFVSTLNAIAGTYYVHSNYFI 406 Query 401 AAPQQGIEIAAVTSSLGGTTTT-YMIPSPTLPLLLPLKQIGVPDWIVGG-LNNVLKP--- 455 P+Q +T+++G T T Y++ + LPLL PL+ + IVG L N+++P Sbjct 407 LTPEQIDAAVPLTNTVGPTMTQYYIVRTENLPLLEPLRSVP----IVGNPLANLVQPNLK 462 Query 456 -LVDAGY 461 +V+ GY Sbjct 463 VIVNLGY 469 >gi|240173260|ref|ZP_04751918.1| PPE family protein [Mycobacterium kansasii ATCC 12478] Length=494 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 181/474 (39%), Positives = 243/474 (52%), Gaps = 41/474 (8%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 +F L PE+NSARMYAG GP + AAAAAWD LAA+L +A SFESV S L W QG + Sbjct 2 NFTVLPPEINSARMYAGAGPAPMLAAAAAWDGLAADLQASAVSFESVASCLVTSW-QGAA 60 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 S M A AA + WL+AAA AE A QA+ A +EAA ATVHPA+V NR + L Sbjct 61 STAMTAAAAPYLAWLSAAAQHAEQTAGQARMAASTFEAALTATVHPAMVGVNRTQLVSLI 120 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRLGG 182 SN+ GQN PAIAA EA YEQMWAQ+V AM Y++ ASAV +RL PWQQL+ Sbjct 121 ASNLLGQNAPAIAATEAEYEQMWAQNVAAMSGYYSNASAVASRLTPWQQLM--------- 171 Query 183 EHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIGTNWFPGT 242 D +T A P++ PG + V L + + + ++ + PG Sbjct 172 ---DGLSTTGAGPAA-----MAPGTALVMGTAFL----QPTPSYVSRIDQLFIAPFHPGY 219 Query 243 TPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSMVI 302 + + P L+G L ++ QS+ ++L++ I+ T +G P V G S + V Sbjct 220 LAQGLYTPEQYWPLTG-LTSLTVGQSMVQSAKVLNDAIM--TQNGNPTLVFGYSQSASVA 276 Query 303 DRELAYLAIDP--NAPPSSALTFVELAGPER---GLAQTYLPVGTTIPIAGYT-VGNAPE 356 E+ +L P P + L+FV A P R G + + G IPI G P Sbjct 277 SLEMQHLLTLPAGQRPTADQLSFVLAANPNRPNGGFLERFH--GLYIPILDLPFFGATPA 334 Query 357 SQYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSL 416 + Y T+ QYD AD P P NLLA ANA+ G Y H P Q S Sbjct 335 NAYPTTDYAIQYDFQADFPQYPLNLLADANAVAGQFYIHSSYPDLTPAQIATGVVQPVSP 394 Query 417 GGTTTTY-MIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKP----LVDAGYSQYA 465 T T Y +IP+ LPLL PL+ + + + L ++++P LV+ GY + A Sbjct 395 ADTMTKYILIPTHDLPLLNPLRAVPI---LGNPLADLVQPDLRVLVELGYDRTA 445 >gi|183981048|ref|YP_001849339.1| PPE family protein [Mycobacterium marinum M] gi|183174374|gb|ACC39484.1| PPE family protein [Mycobacterium marinum M] Length=661 Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 185/481 (39%), Positives = 247/481 (52%), Gaps = 33/481 (6%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQG 60 +A F L PE+NSAR++ G G AAA AWD L+AEL AA SF SV S LA WQG Sbjct 4 LASFSVLPPEINSARLFGGAGSAPTLAAATAWDGLSAELSGAAGSFGSVTSELAAGVWQG 63 Query 61 PSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAW 120 P+S M A R+ GWL +A A GAA+ A+ A +EAA AATVHP VAANRA +A Sbjct 64 PASAAMTVAAGRYVGWLRTSALHAAGAAAAARAAAAEFEAALAATVHPVAVAANRAQLAS 123 Query 121 LAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP--- 177 L +N+FGQN PAIAAAE+ YEQMWAQDV AM Y+ A+AV A+L PW Q L + Sbjct 124 LVMTNLFGQNAPAIAAAESSYEQMWAQDVSAMAGYYGGAAAVAAQLAPWSQQLGTIVGAV 183 Query 178 --------RRLGGEHSDSTNTEL--ANPSSTTTRITVPGAS--PVHAATLLPFIGRLLAA 225 R G + + NT N ++ T V G S P+ + + L Sbjct 184 GGSAGAGLSRASGLSATAANTSSIGTNVAAAQTIAEVMGGSGIPMPSRRYVQLANSLYIG 243 Query 226 RYAELNTAIGTNWFPGTTPEVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATA 285 R + A+ F TPE + YP T GV + + + S+A G +L + I Sbjct 244 R--SVGGAVAQALF---TPEGL-YPVT-GVKNLTF-----DTSVARGVVILESAIREQIT 291 Query 286 SGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPSSALTFVELAGPE--RGLAQTYLPVGTT 343 +G VTV G S + + + LA N P L+F + P G T P G + Sbjct 292 AGNNVTVFGYSQSATISSLTMTKLAASINPPTPDQLSFTLVGDPNNPNGGVATRFP-GLS 350 Query 344 IPIAGYTV-GNAPESQYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAA 402 +P G T G P++ Y T + +YD AD P P NL++ NAL GA Y H + Sbjct 351 LPSLGITASGATPDNLYPTRIYTLEYDGVADFPRYPLNLVSTLNALAGAYYVHTDYLFLT 410 Query 403 PQQGIEIAAVTSSLGGTTTT-YMIPSPTLPLLLPLKQIGV-PDWIVGGLNNVLKPLVDAG 460 P Q +T+++G T T Y+I + LPLL PL+ + V D + + LK +V+ G Sbjct 411 PAQIDAAVHLTNTVGPTMTDYYVIRTEDLPLLEPLRALPVLGDPLADLVQPNLKVIVNLG 470 Query 461 Y 461 Y Sbjct 471 Y 471 >gi|308231943|ref|ZP_07663959.1| PPE family protein [Mycobacterium tuberculosis SUMu001] gi|308215534|gb|EFO74933.1| PPE family protein [Mycobacterium tuberculosis SUMu001] Length=611 Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 160/451 (36%), Positives = 221/451 (50%), Gaps = 45/451 (9%) Query 37 AELWLAAASFESVCSGLADRWWQGPSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMAL 96 +EL AA SF SV SGL WWQG +S M AA + GWL+ +A AEGAA A+ Sbjct 13 SELHCAAMSFGSVTSGLVVGWWQGSASAAMVDAAASYIGWLSTSAAHAEGAAGLARAAVS 72 Query 97 AYEAAFAATVHPALVAANRALVAWLAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYH 156 +E A AATVHPA+VAANRA VA L SN+FGQN PAIAA E++YE MWAQD AM Y+ Sbjct 73 VFEEALAATVHPAMVAANRAQVASLVASNLFGQNAPAIAALESLYECMWAQDAAAMAGYY 132 Query 157 AVASAVGARLRPWQQLLHELPRRLGGEHSDSTNTELANPSSTTTRITVPGASPVHAATLL 216 ASAV +L W Q L +P G D+ A R ++ A Sbjct 133 VGASAVATQLASWLQRLQSIP---GAASLDARLPSSAEAPMGVVRAVN--SAIAANAAAA 187 Query 217 PFIGRLL--------AARYAELNTAIGTNWFPGTTPEVVS---------YPATIGVLSGS 259 +G ++ +ARY EL A+ + G+ P V++ YP + Sbjct 188 QTVGLVMGGSGTPIPSARYVELANAL---YMSGSVPGVIAQALFTPQGLYPVVV------ 238 Query 260 LGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPSS 319 + + + S+A G +L + I A+G VTV G S + + +A LA + P Sbjct 239 IKNLTFDSSVAQGAVILESAIRQQIAAGNNVTVFGYSQSATISSLVMANLAASADPPSPD 298 Query 320 ALTFVELAGPE--RGLAQTYLPVGTTIPIAGYT-VGNAPESQYNTSVVYSQYDIWADPPD 376 L+F + P G T P G + P G T G P + Y T + +YD AD P Sbjct 299 ELSFTLIGNPNNPNGGVATRFP-GISFPSLGVTATGATPHNLYPTKIYTIEYDGVADFPR 357 Query 377 RPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTTTT-YMIPSPTLPLLLP 435 P N ++ NA+ G Y H P+Q +T+++G T T Y+I + LPLL P Sbjct 358 YPLNFVSTLNAIAGTYYVHSNYFILTPEQIDAAVPLTNTVGPTMTQYYIIRTENLPLLEP 417 Query 436 LKQIGVPDWIVGG-LNNVLKP----LVDAGY 461 L+ + IVG L N+++P +V+ GY Sbjct 418 LRSVP----IVGNPLANLVQPNLKVIVNLGY 444 >gi|183981512|ref|YP_001849803.1| PPE family protein, PPE28 [Mycobacterium marinum M] gi|183174838|gb|ACC39948.1| PPE family protein, PPE28 [Mycobacterium marinum M] Length=660 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 175/486 (37%), Positives = 250/486 (52%), Gaps = 27/486 (5%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 +F LSPE NSAR+ +G GPG L AAAAAWD + EL AA++F S+ S LA WQGPS Sbjct 2 NFAVLSPEANSARILSGPGPGPLLAAAAAWDGIGQELAAAASAFSSLTSDLAGAAWQGPS 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MA+ A + WL +AA+ A A QA T A +EAA ATV LVAANR+ + + Sbjct 62 AAAMASVATSYVRWLGSAASGAVQTARQAATSAAVFEAARTATVPLELVAANRSALMSMV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRLGG 182 +NVFG N PAIAA EA YEQMWAQ+V AM YH S + L PWQ++L + R+ Sbjct 122 AANVFGLNAPAIAAIEAQYEQMWAQNVGAMFGYHVGVSEALSGLAPWQEVLSGVSGRVAS 181 Query 183 --EHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAAR-YAE--LNTAIGTN 237 E + + P++ T + A+ ++ G + ++ Y + +N + N Sbjct 182 ALEGTSAAAAAALGPTALTAAGSALPAAATDVTLVIGGSGFPIPSQSYVDNVVNNFVTPN 241 Query 238 WFPGTTPEVVSY--PATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGL 295 + T +S PA ++G + + + S A G +L I A A+G V V G Sbjct 242 FPSFTVSNAISLFTPAESYWITG-IKTMTEDASWAEGLTILDTAIKAQLAAGNNVVVQGY 300 Query 296 SMGSMVIDRELAYLAIDPNAPPSSALTFVELA---GPERGLAQTYLPVGTTIPIAGYTV- 351 S G+ + E++ L P+ +++F + P GL + + G P G T Sbjct 301 SQGAGIASLEMSNL--KAAGVPTGSVSFSLIGNAMNPNGGLYERF--AGLVSPSLGKTFW 356 Query 352 GNAPESQYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAA 411 G P++ Y T V +YD +AD P P N ++ NA+MG Y H Q + A Sbjct 357 GATPDNYYTTDVYTLEYDGFADFPRYPLNFVSDLNAIMGIYYVHTQYPTLTAAQ-VATAF 415 Query 412 VTSSLGGTTTTY-MIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKP----LVDAGYS--QY 464 + G T TTY MIP+ LPLL PL+ GVP +I L ++++P LV+ GY Y Sbjct 416 TLPTEGATMTTYHMIPTENLPLLEPLR--GVP-FIGNTLADLVQPDLKVLVNLGYGDPNY 472 Query 465 APTAGP 470 + GP Sbjct 473 GYSTGP 478 >gi|240168595|ref|ZP_04747254.1| PPE family protein, PPE28 [Mycobacterium kansasii ATCC 12478] Length=641 Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 177/480 (37%), Positives = 252/480 (53%), Gaps = 26/480 (5%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 +FLTL PEVNSAR+ G GP L AAA AW L+ +L +A + SV S ++ WQGP+ Sbjct 2 EFLTLPPEVNSARILRGPGPAPLRAAATAWATLSEDLASSATAVSSVMSEISGSAWQGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MAA A + GWL AAAT+A A A T A AYE A ATV ++A NR+ + L Sbjct 62 AAAMAAAVAPYPGWLGAAATRAAAAGRHAATAAAAYETARTATVPLEMLAQNRSRLVSLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRLGG 182 ++V G N PAIAA EA YEQ+WAQDV AM Y+A ASA A+L PWQ LL L +GG Sbjct 122 AADVLGLNAPAIAATEAHYEQLWAQDVGAMAGYYAGASAAVAQLTPWQTLLSTLESPVGG 181 Query 183 EHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLLAARYAELNTAIG---TNWF 239 + ++PS++T G + V + P + + +NT + T F Sbjct 182 MKAAEAAVSASSPSASTAAT---GVTLVIGGSGYPIPSQ------SYVNTVVADYVTPTF 232 Query 240 PGTTP---EVVSYPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLS 296 PG T + + PA ++G + + + S A G +L N I A A+G V V G S Sbjct 233 PGFTTANAQSLYTPAQSYWITG-VKTLTEDASWAQGLTILDNAIHAQLATGNNVAVQGFS 291 Query 297 MGSMVIDRELAYLAIDPNAPPSSALTFVELA---GPERGLAQTYLPVGTTIPIAGYTV-G 352 G+ + E+A L + P+S+++F + P GL + G T+ G + G Sbjct 292 QGAGIASLEMANLKAE--GVPTSSVSFSLIGDPMNPNGGLYSRF--DGLTLASMGKSFPG 347 Query 353 NAPESQYNTSVVYSQYDIWADPPDRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAV 412 + P + Y T + +YD +AD P P NL+A ANA++GA Y H P Q + + Sbjct 348 STPANDYPTVIYTIEYDGFADFPQYPLNLVADANAMLGALYVHPQYPVLTPAQVVTAVQL 407 Query 413 TSSLGGTTTTYMIPSPTLPLLLPLKQIGVPDWIVGGLNNVLKPLVDAGYS--QYAPTAGP 470 + TTT YMIP+ LPLL PL+ + + + + + LK +V+ GY Y + GP Sbjct 408 PTQGPTTTTYYMIPTQNLPLLEPLRALPLGNTVADLIQPDLKVIVNLGYGNPDYGYSTGP 467 >gi|118617931|ref|YP_906263.1| PPE family protein [Mycobacterium ulcerans Agy99] gi|118570041|gb|ABL04792.1| PPE family protein [Mycobacterium ulcerans Agy99] Length=637 Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 160/462 (35%), Positives = 231/462 (50%), Gaps = 27/462 (5%) Query 27 AAAAAWDELAAELWLAAASFESVCSGLADRWWQGPSSRMMAAQAARHTGWLAAAATQAEG 86 AAAAAWD EL AA++F S+ S LA WQGPS+ MA+ A + WL +AA+ A Sbjct 3 AAAAAWDGTGQELAAAASAFSSLTSDLAGAAWQGPSAAAMASVATSYVRWLGSAASGAVQ 62 Query 87 AASQAQTMALAYEAAFAATVHPALVAANRALVAWLAGSNVFGQNTPAIAAAEAIYEQMWA 146 A Q T A +EAA ATV LVAANR+ + + +NVFG N PAIAA EA YEQMWA Sbjct 63 TARQVATSAAVFEAARTATVPLELVAANRSALMSMVAANVFGLNAPAIAAIEAQYEQMWA 122 Query 147 QDVVAMLNYHAVASAVGARLRPWQQLLHELPRRLGG--EHSDSTNTELANPSSTTTRITV 204 Q+V AM YH S + L PWQ++L + R+ E + + P++ T + Sbjct 123 QNVGAMFGYHVGVSEALSGLAPWQEVLSGVSGRVASALEGTSAAAAAALGPTALTAAGSA 182 Query 205 PGASPVHAATLLPFIGRLLAAR-YAE--LNTAIGTNWFPGTTPEVVSY--PATIGVLSGS 259 A+ ++ G + ++ Y + +N + N+ T +S PA ++G Sbjct 183 LPAAATDVTLVIGGSGFPIPSQSYVDNVVNNFVTPNFPSFTVSNAISLFTPAESYWITG- 241 Query 260 LGAVDANQSIAIGQQMLHNEILAATASGQPVTVAGLSMGSMVIDRELAYLAIDPNAPPSS 319 + + + S A G +L I A A+G V V G S G+ + E++ L P+ Sbjct 242 IKTMTEDASWAEGLTILDTAIKAQLAAGNNVVVQGYSQGAGIASLEMSNL--KAAGVPTG 299 Query 320 ALTFVELA---GPERGLAQTYLPVGTTIPIAGYTV-GNAPESQYNTSVVYSQYDIWADPP 375 +++F + P GL + + G P G T G P++ Y T V +YD +AD P Sbjct 300 SVSFSLIGNAMNPNGGLYERF--AGLVSPSLGKTFWGATPDNYYTTDVYTLEYDGFADFP 357 Query 376 DRPWNLLAGANALMGAAYFHDLTAYAAPQQGIEIAAVTSSLGGTTTTY-MIPSPTLPLLL 434 P N ++ NA+MG Y H Q + A + G T TTY MIP+ LPLL Sbjct 358 RYPPNFVSDLNAIMGIYYVHTQYPTLTAAQ-VATAFTLPTEGATMTTYHMIPTENLPLLE 416 Query 435 PLKQIGVPDWIVGGLNNVLKP----LVDAGYSQ--YAPTAGP 470 PL+ GVP +I L ++++P LV+ GY Y + GP Sbjct 417 PLR--GVP-FIGNTLADLVQPDLKVLVNLGYGDPNYGYSTGP 455 >gi|339298363|gb|AEJ50473.1| PPE family protein [Mycobacterium tuberculosis CCDC5180] Length=362 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 136/346 (40%), Positives = 182/346 (53%), Gaps = 33/346 (9%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 +F L PEVNSAR++AG G + AAAAAWD+LA+EL AA SF SV SGL WWQG + Sbjct 4 NFAVLPPEVNSARVFAGAGSAPMLAAAAAWDDLASELHCAAMSFGSVTSGLVVGWWQGSA 63 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 S M AA + GWL+ +A AEGAA A+ +E A AATVHPA+VAANRA VA L Sbjct 64 SAAMVDAAASYIGWLSTSAAHAEGAAGLARAAVSVFEEALAATVHPAMVAANRAQVASLV 123 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRLGG 182 SN+FGQN PAIAA E++YE MWAQD AM Y+ ASAV +L W Q L +P G Sbjct 124 ASNLFGQNAPAIAALESLYECMWAQDAAAMAGYYVGASAVATQLASWLQRLQSIP---GA 180 Query 183 EHSDSTNTELANPSSTTTRITVPGASPVHAATLLPFIGRLL--------AARYAELNTAI 234 D+ A R ++ A +G ++ +ARY EL A+ Sbjct 181 ASLDARLPSSAEAPMGVVRAVN--SAIAANAAAAQTVGLVMGGSGTPIPSARYVELANAL 238 Query 235 GTNWFPGTTPEVVS---------YPATIGVLSGSLGAVDANQSIAIGQQMLHNEILAATA 285 + G+ P V++ YP + + + + S+A G +L + I A Sbjct 239 ---YMSGSVPGVIAQALFTPQGLYPVVV------IKNLTFDSSVAQGAVILESAIRQQIA 289 Query 286 SGQPVTVAGLSMGSMVIDRELAYLA--IDPNAPPSSALTFVELAGP 329 +G VTV G S + + +A LA DP +P + T + + P Sbjct 290 AGNNVTVFGYSQSATISSLVMANLAASADPPSPDELSFTLIGMNRP 335 >gi|118616724|ref|YP_905056.1| PPE family protein [Mycobacterium ulcerans Agy99] gi|118568834|gb|ABL03585.1| PPE family protein [Mycobacterium ulcerans Agy99] Length=621 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 102/178 (58%), Positives = 124/178 (70%), Gaps = 0/178 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 +F+ L PEVNSA M+ G G AAA AWD L AEL AA +F SV SGLA WQGP+ Sbjct 2 NFMMLPPEVNSALMFTGAGSAPTLAAATAWDGLVAELGEAAEAFSSVTSGLASGSWQGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MAA AA + GWL+AAAT+A GAA+QA+ A +E+A AATVHP LV ANR + L Sbjct 62 AAAMAAAAAPYAGWLSAAATRALGAATQAKAAAAVFESAQAATVHPELVLANRNQLVSLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 SN+FGQN PAIAA E+ YE++WAQDV A + YH ASAV A+L PWQQ + LP R+ Sbjct 122 LSNLFGQNAPAIAATESTYEELWAQDVAATVGYHGGASAVAAQLAPWQQAIQALPGRV 179 >gi|183984289|ref|YP_001852580.1| PPE family protein [Mycobacterium marinum M] gi|183177615|gb|ACC42725.1| PPE family protein [Mycobacterium marinum M] Length=621 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 104/178 (59%), Positives = 126/178 (71%), Gaps = 0/178 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 +F+ L PEVNSA M+ G G AAA AWD LAAEL AA +F SV SGLA WQGP+ Sbjct 2 NFMMLPPEVNSALMFTGAGSAPTLAAATAWDGLAAELGEAAEAFSSVTSGLASGSWQGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MAA AA + GWL+AAAT+A GAA+QA+ A +E+A AATVHP LV ANR + L Sbjct 62 AAAMAAAAAPYAGWLSAAATRALGAATQAKAAAAVFESAQAATVHPELVLANRNQLVSLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 SN+FGQN PAIAA E+ YE++WAQDV AM+ YH ASAV A+L PWQQ + LP R+ Sbjct 122 LSNLFGQNAPAIAATESTYEELWAQDVAAMVGYHGGASAVAAQLAPWQQAIQALPGRV 179 >gi|289442288|ref|ZP_06432032.1| PPE family protein [Mycobacterium tuberculosis T46] gi|289415207|gb|EFD12447.1| PPE family protein [Mycobacterium tuberculosis T46] Length=448 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 107/180 (60%), Positives = 126/180 (70%), Gaps = 3/180 (1%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLA---DRW 57 M +F+ L PEVNSAR+YAG GP + AAA AWD LAAEL +AAASF + SGL Sbjct 1 MMNFMVLPPEVNSARIYAGAGPAPMLAAAVAWDGLAAELGMAAASFSLLISGLTAGPGSA 60 Query 58 WQGPSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRAL 117 WQGP++ MAA AA + WL AA +AEGAA+ A+ + YEAA AAT HPALVAANR Sbjct 61 WQGPAAAAMAAAAAPYLSWLNAATARAEGAAAGAKAASAVYEAARAATAHPALVAANRNQ 120 Query 118 VAWLAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 + L SN+FGQN PAIAA EA YEQ+WAQDV AM+ YH AS V ++L PWQQLL LP Sbjct 121 LLSLVLSNLFGQNLPAIAATEASYEQLWAQDVAAMVGYHGGASTVASQLTPWQQLLSVLP 180 >gi|289749400|ref|ZP_06508778.1| LOW QUALITY PROTEIN: PPE family protein [Mycobacterium tuberculosis T92] gi|289689987|gb|EFD57416.1| LOW QUALITY PROTEIN: PPE family protein [Mycobacterium tuberculosis T92] Length=443 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 106/178 (60%), Positives = 125/178 (71%), Gaps = 3/178 (1%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLA---DRWWQ 59 +F+ L PEVNSAR+YAG GP + AAA AWD LAAEL +AAASF + SGL WQ Sbjct 2 NFMVLPPEVNSARIYAGAGPAPMLAAAVAWDGLAAELGMAAASFSLLISGLTAGPGSAWQ 61 Query 60 GPSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVA 119 GP++ MAA AA + WL AA +AEGAA+ A+ + YEAA AAT HPALVAANR + Sbjct 62 GPAAAAMAAAAAPYLSWLNAATARAEGAAAGAKAASAVYEAARAATAHPALVAANRNQLL 121 Query 120 WLAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 L SN+FGQN PAIAA EA YEQ+WAQDV AM+ YH AS V ++L PWQQLL LP Sbjct 122 SLVLSNLFGQNLPAIAATEASYEQLWAQDVAAMVGYHGGASTVASQLTPWQQLLSVLP 179 >gi|240167983|ref|ZP_04746642.1| PPE family protein [Mycobacterium kansasii ATCC 12478] Length=469 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 106/178 (60%), Positives = 123/178 (70%), Gaps = 0/178 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 +F L PE+NSARM+ G GPG + +AAAAWD LAAEL AA SF SV S LA WQGP+ Sbjct 2 NFSVLPPEINSARMFVGAGPGPMLSAAAAWDGLAAELQAAATSFSSVTSELAGAAWQGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 S MAA AA + GWL AAA QA GAA QA+ M A+EAA AATV P +VA NR + Sbjct 62 SAAMAAAAAPYMGWLTAAAVQAGGAAGQARAMVSAFEAAQAATVQPIMVALNRNAFVRMV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELPRRL 180 +N FGQN AIA AEA YEQMWAQDV AM YH ASAV ARL P+Q++L LP ++ Sbjct 122 LTNWFGQNCLAIAGAEAEYEQMWAQDVAAMAGYHGCASAVAARLTPFQRMLQSLPGQV 179 >gi|41410037|ref|NP_962873.1| hypothetical protein MAP3939c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118462388|ref|YP_883831.1| PPE family protein [Mycobacterium avium 104] gi|41398870|gb|AAS06489.1| hypothetical protein MAP_3939c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118163675|gb|ABK64572.1| ppe family protein [Mycobacterium avium 104] gi|212596213|gb|ACJ35560.1| PPE37 [Mycobacterium avium subsp. avium] gi|336460319|gb|EGO39219.1| PPE family protein [Mycobacterium avium subsp. paratuberculosis S397] Length=214 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 103/173 (60%), Positives = 117/173 (68%), Gaps = 0/173 (0%) Query 4 FLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPSS 63 F L PEVNSA +Y+G GPG L AAAAAWD LA EL +A SF SV S LA WQG SS Sbjct 6 FAWLPPEVNSALIYSGPGPGPLLAAAAAWDGLAEELASSAQSFSSVTSDLASGSWQGASS 65 Query 64 RMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLAG 123 M A ++ WL+AAA QAE + QA +A A+E A AATV PA+VAANRALV LA Sbjct 66 AAMMTVANQYVSWLSAAAAQAEEVSHQASAIATAFEVALAATVQPAVVAANRALVQALAA 125 Query 124 SNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHEL 176 +N GQNTPAIA EA YEQMWA DV AM YHA ASA A+L PW ++L L Sbjct 126 TNWLGQNTPAIADIEAAYEQMWASDVAAMFGYHADASAAVAKLPPWNEVLQNL 178 >gi|308371787|ref|ZP_07426236.2| putative PPE family protein [Mycobacterium tuberculosis SUMu004] gi|308335369|gb|EFP24220.1| putative PPE family protein [Mycobacterium tuberculosis SUMu004] Length=282 Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 108/180 (60%), Positives = 126/180 (70%), Gaps = 3/180 (1%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLA---DRW 57 M +F+ L PEVNSAR+YAG GP + AAA AWD LAAEL +AAASF + SGL Sbjct 1 MMNFMVLPPEVNSARIYAGAGPAPMLAAAVAWDGLAAELGMAAASFSLLISGLTAGPGSA 60 Query 58 WQGPSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRAL 117 WQGP++ MAA AA + WL AA +AEGAA+ A+ A YEAA AAT HPALVAANR Sbjct 61 WQGPAAAAMAAAAAPYLSWLNAATARAEGAAAGAKAAAAVYEAARAATAHPALVAANRNQ 120 Query 118 VAWLAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 + L SN+FGQN PAIAA EA YEQ+WAQDV AM+ YH AS V ++L PWQQLL LP Sbjct 121 LLSLVLSNLFGQNLPAIAATEASYEQLWAQDVAAMVGYHGGASTVASQLTPWQQLLSVLP 180 >gi|240173028|ref|ZP_04751686.1| PPE family protein [Mycobacterium kansasii ATCC 12478] Length=591 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 115/235 (49%), Positives = 136/235 (58%), Gaps = 35/235 (14%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 +F+ L PE+NSAR+Y G G G + AAAAAWD LA EL AA SF SV SGL WQGP+ Sbjct 5 NFVILPPEINSARVYLGAGSGPMLAAAAAWDGLAGELGSAAGSFGSVTSGLTGAVWQGPA 64 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + M AA + GWL+AAA A+GAA QA+T A+EAA AATVHP VAANR + L Sbjct 65 ATAMVEAAAPYVGWLSAAAAHAQGAAGQARTAVSAFEAAVAATVHPVAVAANRNQLVSLV 124 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPW----QQLLHELPR 178 SN+FGQN PAIAAAE YEQMWAQDV AM+ YH A+AV A+L P QQ L LP Sbjct 125 VSNLFGQNAPAIAAAETAYEQMWAQDVAAMVGYHGEAAAVVAQLAPMQSGLQQALQTLPG 184 Query 179 RL--------------GGEHSDST-----------------NTELANPSSTTTRI 202 L GG H D+ NT L N +S + + Sbjct 185 MLANLGVGNAGSGNLGGGNHGDNNLGSGNNGSHNVGSGNAGNTNLGNGNSGNSNV 239 >gi|339297531|gb|AEJ49641.1| PPE family protein [Mycobacterium tuberculosis CCDC5180] Length=442 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 108/180 (60%), Positives = 126/180 (70%), Gaps = 3/180 (1%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLA---DRW 57 M +F+ L PEVNSAR+YAG GP + AAA AWD LAAEL +AAASF + SGL Sbjct 1 MMNFMVLPPEVNSARIYAGAGPAPMLAAAVAWDGLAAELGMAAASFSLLISGLTAGPGSA 60 Query 58 WQGPSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRAL 117 WQGP++ MAA AA + WL AA +AEGAA+ A+ A YEAA AAT HPALVAANR Sbjct 61 WQGPAAAAMAAAAAPYLSWLNAATARAEGAAAGAKAAAAVYEAARAATAHPALVAANRNQ 120 Query 118 VAWLAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 + L SN+FGQN PAIAA EA YEQ+WAQDV AM+ YH AS V ++L PWQQLL LP Sbjct 121 LLSLVLSNLFGQNLPAIAATEASYEQLWAQDVAAMVGYHGGASTVASQLTPWQQLLSVLP 180 >gi|308370523|ref|ZP_07421870.2| PPE family protein [Mycobacterium tuberculosis SUMu003] gi|308331648|gb|EFP20499.1| PPE family protein [Mycobacterium tuberculosis SUMu003] Length=443 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 108/180 (60%), Positives = 126/180 (70%), Gaps = 3/180 (1%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLA---DRW 57 M +F+ L PEVNSAR+YAG GP + AAA AWD LAAEL +AAASF + SGL Sbjct 1 MMNFMVLPPEVNSARIYAGAGPAPMLAAAVAWDGLAAELGMAAASFSLLISGLTAGPGSA 60 Query 58 WQGPSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRAL 117 WQGP++ MAA AA + WL AA +AEGAA+ A+ A YEAA AAT HPALVAANR Sbjct 61 WQGPAAAAMAAAAAPYLSWLNAATARAEGAAAGAKAAAAVYEAARAATAHPALVAANRNQ 120 Query 118 VAWLAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 + L SN+FGQN PAIAA EA YEQ+WAQDV AM+ YH AS V ++L PWQQLL LP Sbjct 121 LLSLVLSNLFGQNLPAIAATEASYEQLWAQDVAAMVGYHGGASTVASQLTPWQQLLSVLP 180 >gi|323720587|gb|EGB29665.1| PPE family protein [Mycobacterium tuberculosis CDC1551A] Length=439 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 108/180 (60%), Positives = 126/180 (70%), Gaps = 3/180 (1%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLA---DRW 57 M +F+ L PEVNSAR+YAG GP + AAA AWD LAAEL +AAASF + SGL Sbjct 1 MMNFMVLPPEVNSARIYAGAGPAPMLAAAVAWDGLAAELGMAAASFSLLISGLTAGPGSA 60 Query 58 WQGPSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRAL 117 WQGP++ MAA AA + WL AA +AEGAA+ A+ A YEAA AAT HPALVAANR Sbjct 61 WQGPAAAAMAAAAAPYLSWLNAATARAEGAAAGAKAAAAVYEAARAATAHPALVAANRNQ 120 Query 118 VAWLAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 + L SN+FGQN PAIAA EA YEQ+WAQDV AM+ YH AS V ++L PWQQLL LP Sbjct 121 LLSLVLSNLFGQNLPAIAATEASYEQLWAQDVAAMVGYHGGASTVASQLTPWQQLLSVLP 180 >gi|15840292|ref|NP_335329.1| PPE family protein [Mycobacterium tuberculosis CDC1551] gi|13880453|gb|AAK45143.1| PPE family protein [Mycobacterium tuberculosis CDC1551] Length=444 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 108/180 (60%), Positives = 126/180 (70%), Gaps = 3/180 (1%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLA---DRW 57 M +F+ L PEVNSAR+YAG GP + AAA AWD LAAEL +AAASF + SGL Sbjct 1 MMNFMVLPPEVNSARIYAGAGPAPMLAAAVAWDGLAAELGMAAASFSLLISGLTAGPGSA 60 Query 58 WQGPSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRAL 117 WQGP++ MAA AA + WL AA +AEGAA+ A+ A YEAA AAT HPALVAANR Sbjct 61 WQGPAAAAMAAAAAPYLSWLNAATARAEGAAAGAKAAAAVYEAARAATAHPALVAANRNQ 120 Query 118 VAWLAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 + L SN+FGQN PAIAA EA YEQ+WAQDV AM+ YH AS V ++L PWQQLL LP Sbjct 121 LLSLVLSNLFGQNLPAIAATEASYEQLWAQDVAAMVGYHGGASTVASQLTPWQQLLSVLP 180 >gi|326904903|gb|EGE51836.1| PPE family protein [Mycobacterium tuberculosis W-148] Length=449 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 108/180 (60%), Positives = 126/180 (70%), Gaps = 3/180 (1%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLA---DRW 57 M +F+ L PEVNSAR+YAG GP + AAA AWD LAAEL +AAASF + SGL Sbjct 1 MMNFMVLPPEVNSARIYAGAGPAPMLAAAVAWDGLAAELGMAAASFSLLISGLTAGPGSA 60 Query 58 WQGPSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRAL 117 WQGP++ MAA AA + WL AA +AEGAA+ A+ A YEAA AAT HPALVAANR Sbjct 61 WQGPAAAAMAAAAAPYLSWLNAATARAEGAAAGAKAAAAVYEAARAATAHPALVAANRNQ 120 Query 118 VAWLAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 + L SN+FGQN PAIAA EA YEQ+WAQDV AM+ YH AS V ++L PWQQLL LP Sbjct 121 LLSLVLSNLFGQNLPAIAATEASYEQLWAQDVAAMVGYHGGASTVASQLTPWQQLLSVLP 180 >gi|339293890|gb|AEJ46001.1| PPE family protein [Mycobacterium tuberculosis CCDC5079] Length=447 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 108/180 (60%), Positives = 126/180 (70%), Gaps = 3/180 (1%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLA---DRW 57 M +F+ L PEVNSAR+YAG GP + AAA AWD LAAEL +AAASF + SGL Sbjct 1 MMNFMVLPPEVNSARIYAGAGPAPMLAAAVAWDGLAAELGMAAASFSLLISGLTAGPGSA 60 Query 58 WQGPSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRAL 117 WQGP++ MAA AA + WL AA +AEGAA+ A+ A YEAA AAT HPALVAANR Sbjct 61 WQGPAAAAMAAAAAPYLSWLNAATARAEGAAAGAKAAAAVYEAARAATAHPALVAANRNQ 120 Query 118 VAWLAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 + L SN+FGQN PAIAA EA YEQ+WAQDV AM+ YH AS V ++L PWQQLL LP Sbjct 121 LLSLVLSNLFGQNLPAIAATEASYEQLWAQDVAAMVGYHGGASTVASQLTPWQQLLSVLP 180 >gi|308397492|ref|ZP_07492512.2| PPE family protein [Mycobacterium tuberculosis SUMu012] gi|308366815|gb|EFP55666.1| PPE family protein [Mycobacterium tuberculosis SUMu012] Length=449 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 108/180 (60%), Positives = 126/180 (70%), Gaps = 3/180 (1%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLA---DRW 57 M +F+ L PEVNSAR+YAG GP + AAA AWD LAAEL +AAASF + SGL Sbjct 1 MMNFMVLPPEVNSARIYAGAGPAPMLAAAVAWDGLAAELGMAAASFSLLISGLTAGPGSA 60 Query 58 WQGPSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRAL 117 WQGP++ MAA AA + WL AA +AEGAA+ A+ A YEAA AAT HPALVAANR Sbjct 61 WQGPAAAAMAAAAAPYLSWLNAATARAEGAAAGAKAAAAVYEAARAATAHPALVAANRNQ 120 Query 118 VAWLAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 + L SN+FGQN PAIAA EA YEQ+WAQDV AM+ YH AS V ++L PWQQLL LP Sbjct 121 LLSLVLSNLFGQNLPAIAATEASYEQLWAQDVAAMVGYHGGASTVASQLTPWQQLLSVLP 180 >gi|289573504|ref|ZP_06453731.1| PPE family protein [Mycobacterium tuberculosis K85] gi|308231659|ref|ZP_07413340.2| PPE family protein [Mycobacterium tuberculosis SUMu001] gi|308376534|ref|ZP_07439206.2| PPE family protein [Mycobacterium tuberculosis SUMu008] 9 more sequence titles Length=448 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 108/180 (60%), Positives = 126/180 (70%), Gaps = 3/180 (1%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLA---DRW 57 M +F+ L PEVNSAR+YAG GP + AAA AWD LAAEL +AAASF + SGL Sbjct 1 MMNFMVLPPEVNSARIYAGAGPAPMLAAAVAWDGLAAELGMAAASFSLLISGLTAGPGSA 60 Query 58 WQGPSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRAL 117 WQGP++ MAA AA + WL AA +AEGAA+ A+ A YEAA AAT HPALVAANR Sbjct 61 WQGPAAAAMAAAAAPYLSWLNAATARAEGAAAGAKAAAAVYEAARAATAHPALVAANRNQ 120 Query 118 VAWLAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 + L SN+FGQN PAIAA EA YEQ+WAQDV AM+ YH AS V ++L PWQQLL LP Sbjct 121 LLSLVLSNLFGQNLPAIAATEASYEQLWAQDVAAMVGYHGGASTVASQLTPWQQLLSVLP 180 >gi|308370137|ref|ZP_07420419.2| PPE family protein [Mycobacterium tuberculosis SUMu002] gi|308372959|ref|ZP_07430555.2| PPE family protein [Mycobacterium tuberculosis SUMu005] gi|308325228|gb|EFP14079.1| PPE family protein [Mycobacterium tuberculosis SUMu002] gi|308339176|gb|EFP28027.1| PPE family protein [Mycobacterium tuberculosis SUMu005] Length=448 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 108/180 (60%), Positives = 126/180 (70%), Gaps = 3/180 (1%) Query 1 MADFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLA---DRW 57 M +F+ L PEVNSAR+YAG GP + AAA AWD LAAEL +AAASF + SGL Sbjct 1 MMNFMVLPPEVNSARIYAGAGPAPMLAAAVAWDGLAAELGMAAASFSLLISGLTAGPGSA 60 Query 58 WQGPSSRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRAL 117 WQGP++ MAA AA + WL AA +AEGAA+ A+ A YEAA AAT HPALVAANR Sbjct 61 WQGPAAAAMAAAAAPYLSWLNAATARAEGAAAGAKAAAAVYEAARAATAHPALVAANRNQ 120 Query 118 VAWLAGSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 + L SN+FGQN PAIAA EA YEQ+WAQDV AM+ YH AS V ++L PWQQLL LP Sbjct 121 LLSLVLSNLFGQNLPAIAATEASYEQLWAQDVAAMVGYHGGASTVASQLTPWQQLLSVLP 180 >gi|344218125|gb|AEM98755.1| PPE family protein [Mycobacterium tuberculosis CTRI-2] Length=3191 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/174 (58%), Positives = 122/174 (71%), Gaps = 0/174 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 DF+ +PEVNS RMY G G G + AAAAAWD LA EL +AA+ F SV SGLAD W+GP+ Sbjct 2 DFVVSAPEVNSLRMYLGAGSGPMLAAAAAWDGLADELAVAASWFGSVTSGLADAAWRGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MA A + GWL +A QAE AA+QA+ +EAA AATVHPA+VAANRA++ L Sbjct 62 AVAMARAVAPYLGWLISATAQAEQAAAQARVAVATFEAARAATVHPAIVAANRAVLVSLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHEL 176 SN+ G N PAIAA EA YE+MWAQDV AM+ YHA ASA + L P+ Q L +L Sbjct 122 SSNLLGFNAPAIAATEAAYERMWAQDVAAMVGYHAGASAAVSALMPFTQQLKKL 175 >gi|306970504|ref|ZP_07483165.1| PPE family protein [Mycobacterium tuberculosis SUMu010] gi|307078232|ref|ZP_07487402.1| PPE family protein [Mycobacterium tuberculosis SUMu011] gi|308359899|gb|EFP48750.1| PPE family protein [Mycobacterium tuberculosis SUMu010] gi|308363801|gb|EFP52652.1| PPE family protein [Mycobacterium tuberculosis SUMu011] Length=3186 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/174 (58%), Positives = 122/174 (71%), Gaps = 0/174 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 DF+ +PEVNS RMY G G G + AAAAAWD LA EL +AA+ F SV SGLAD W+GP+ Sbjct 2 DFVVSAPEVNSLRMYLGAGSGPMLAAAAAWDGLADELAVAASWFGSVTSGLADAAWRGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MA A + GWL +A QAE AA+QA+ +EAA AATVHPA+VAANRA++ L Sbjct 62 AVAMARAVAPYLGWLISATAQAEQAAAQARVAVATFEAARAATVHPAIVAANRAVLVSLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHEL 176 SN+ G N PAIAA EA YE+MWAQDV AM+ YHA ASA + L P+ Q L +L Sbjct 122 SSNLLGFNAPAIAATEAAYERMWAQDVAAMVGYHAGASAAVSALMPFTQQLKKL 175 >gi|253797231|ref|YP_003030232.1| PPE family protein [Mycobacterium tuberculosis KZN 1435] gi|253318734|gb|ACT23337.1| PPE family protein [Mycobacterium tuberculosis KZN 1435] gi|328457018|gb|AEB02441.1| PPE family protein [Mycobacterium tuberculosis KZN 4207] Length=3196 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/174 (58%), Positives = 122/174 (71%), Gaps = 0/174 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 DF+ +PEVNS RMY G G G + AAAAAWD LA EL +AA+ F SV SGLAD W+GP+ Sbjct 2 DFVVSAPEVNSLRMYLGAGSGPMLAAAAAWDGLADELAVAASWFGSVTSGLADAAWRGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MA A + GWL +A QAE AA+QA+ +EAA AATVHPA+VAANRA++ L Sbjct 62 AVAMARAVAPYLGWLISATAQAEQAAAQARVAVATFEAARAATVHPAIVAANRAVLVSLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHEL 176 SN+ G N PAIAA EA YE+MWAQDV AM+ YHA ASA + L P+ Q L +L Sbjct 122 SSNLLGFNAPAIAATEAAYERMWAQDVAAMVGYHAGASAAVSALMPFTQQLKKL 175 >gi|340625336|ref|YP_004743788.1| ppe family protein [Mycobacterium canettii CIPT 140010059] gi|340003526|emb|CCC42647.1| ppe family protein [Mycobacterium canettii CIPT 140010059] Length=3181 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/174 (58%), Positives = 122/174 (71%), Gaps = 0/174 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 DF+ +PEVNS RMY G G G + AAAAAWD LA EL +AA+ F SV SGLAD W+GP+ Sbjct 2 DFVVSAPEVNSLRMYLGAGSGPMLAAAAAWDGLADELAVAASWFGSVTSGLADAAWRGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MA A + GWL +A QAE AA+QA+ +EAA AATVHPA+VAANRA++ L Sbjct 62 AVAMARAVAPYLGWLISATAQAEQAAAQARVAVATFEAARAATVHPAIVAANRAVLVSLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHEL 176 SN+ G N PAIAA EA YE+MWAQDV AM+ YHA ASA + L P+ Q L +L Sbjct 122 SSNLLGFNAPAIAATEAAYERMWAQDVAAMVGYHAGASAAVSALMPFTQQLKKL 175 >gi|289441685|ref|ZP_06431429.1| PPE family protein [Mycobacterium tuberculosis T46] gi|289414604|gb|EFD11844.1| PPE family protein [Mycobacterium tuberculosis T46] Length=3181 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/174 (58%), Positives = 122/174 (71%), Gaps = 0/174 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 DF+ +PEVNS RMY G G G + AAAAAWD LA EL +AA+ F SV SGLAD W+GP+ Sbjct 2 DFVVSAPEVNSLRMYLGAGSGPMLAAAAAWDGLADELAVAASWFGSVTSGLADAAWRGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MA A + GWL +A QAE AA+QA+ +EAA AATVHPA+VAANRA++ L Sbjct 62 AVAMARAVAPYLGWLISATAQAEQAAAQARVAVATFEAARAATVHPAIVAANRAVLVSLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHEL 176 SN+ G N PAIAA EA YE+MWAQDV AM+ YHA ASA + L P+ Q L +L Sbjct 122 SSNLLGFNAPAIAATEAAYERMWAQDVAAMVGYHAGASAAVSALMPFTQQLKKL 175 >gi|57117066|ref|YP_177936.1| PPE family protein [Mycobacterium tuberculosis H37Rv] gi|38490331|emb|CAE55560.1| PPE-FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv] Length=409 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 97/175 (56%), Positives = 119/175 (68%), Gaps = 0/175 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 F+ L PE+NS RM+ G G + AAAAAWD LA EL AA SF SV +GLA + WQGP+ Sbjct 2 SFVVLPPEINSLRMFIGAGTAPMLAAAAAWDGLAEELGTAAQSFASVTAGLAGQAWQGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MAA AA + GWL AAA Q+ GAA QA+ +A +EAA AATV PA VAANR L Sbjct 62 ALAMAAAAAPYAGWLTAAAAQSAGAAGQARAVASIFEAAQAATVLPAAVAANRDAFVQLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 +N+FGQN P IAAAE +YE+MWA DV AM Y++ ASA+ A++ PW LL P Sbjct 122 MTNLFGQNAPLIAAAEGVYEEMWAADVAAMSGYYSGASAIAAQVVPWASLLQRFP 176 >gi|15842720|ref|NP_337757.1| PPE family protein [Mycobacterium tuberculosis CDC1551] gi|148662999|ref|YP_001284522.1| PPE family protein [Mycobacterium tuberculosis H37Ra] gi|148824338|ref|YP_001289092.1| PPE family protein [Mycobacterium tuberculosis F11] 20 more sequence titles Length=409 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 97/175 (56%), Positives = 119/175 (68%), Gaps = 0/175 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 F+ L PE+NS RM+ G G + AAAAAWD LA EL AA SF SV +GLA + WQGP+ Sbjct 2 SFVVLPPEINSLRMFIGAGTAPMLAAAAAWDGLAEELGTAAQSFASVTAGLAGQAWQGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MAA AA + GWL AAA Q+ GAA QA+ +A +EAA AATV PA VAANR L Sbjct 62 ALAMAAAAAPYAGWLTAAAAQSAGAAGQARAVASIFEAAQAATVLPAAVAANRDAFVQLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 +N+FGQN P IAAAE +YE+MWA DV AM Y++ ASA+ A++ PW LL P Sbjct 122 MTNLFGQNAPLIAAAEGVYEEMWAADVAAMSGYYSGASAIAAQVVPWASLLQRFP 176 >gi|306806111|ref|ZP_07442779.1| PPE family protein [Mycobacterium tuberculosis SUMu007] gi|306966309|ref|ZP_07478970.1| PPE family protein [Mycobacterium tuberculosis SUMu009] gi|308347367|gb|EFP36218.1| PPE family protein [Mycobacterium tuberculosis SUMu007] gi|308355942|gb|EFP44793.1| PPE family protein [Mycobacterium tuberculosis SUMu009] Length=3186 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/174 (58%), Positives = 122/174 (71%), Gaps = 0/174 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 DF+ +PEVNS RMY G G G + AAAAAWD LA EL +AA+ F SV SGLAD W+GP+ Sbjct 2 DFVVSAPEVNSLRMYLGAGSGPMLAAAAAWDGLADELAVAASWFGSVTSGLADAAWRGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MA A + GWL +A QAE AA+QA+ +EAA AATVHPA+VAANRA++ L Sbjct 62 AVAMARAVAPYLGWLISATAQAEQAAAQARVAVATFEAARAATVHPAIVAANRAVLVSLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHEL 176 SN+ G N PAIAA EA YE+MWAQDV AM+ YHA ASA + L P+ Q L +L Sbjct 122 SSNLLGFNAPAIAATEAAYERMWAQDVAAMVGYHAGASAAVSALMPFTQQLKKL 175 >gi|254549250|ref|ZP_05139697.1| PPE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|297632792|ref|ZP_06950572.1| PPE family protein [Mycobacterium tuberculosis KZN 4207] gi|297729767|ref|ZP_06958885.1| PPE family protein [Mycobacterium tuberculosis KZN R506] gi|306782933|ref|ZP_07421255.1| PPE family protein [Mycobacterium tuberculosis SUMu003] gi|306796040|ref|ZP_07434342.1| PPE family protein [Mycobacterium tuberculosis SUMu006] gi|313657096|ref|ZP_07813976.1| PPE family protein [Mycobacterium tuberculosis KZN V2475] gi|308332211|gb|EFP21062.1| PPE family protein [Mycobacterium tuberculosis SUMu003] gi|308343506|gb|EFP32357.1| PPE family protein [Mycobacterium tuberculosis SUMu006] Length=3186 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/174 (58%), Positives = 122/174 (71%), Gaps = 0/174 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 DF+ +PEVNS RMY G G G + AAAAAWD LA EL +AA+ F SV SGLAD W+GP+ Sbjct 2 DFVVSAPEVNSLRMYLGAGSGPMLAAAAAWDGLADELAVAASWFGSVTSGLADAAWRGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MA A + GWL +A QAE AA+QA+ +EAA AATVHPA+VAANRA++ L Sbjct 62 AVAMARAVAPYLGWLISATAQAEQAAAQARVAVATFEAARAATVHPAIVAANRAVLVSLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHEL 176 SN+ G N PAIAA EA YE+MWAQDV AM+ YHA ASA + L P+ Q L +L Sbjct 122 SSNLLGFNAPAIAATEAAYERMWAQDVAAMVGYHAGASAAVSALMPFTQQLKKL 175 >gi|340628120|ref|YP_004746572.1| PPE-family protein [Mycobacterium canettii CIPT 140010059] gi|340006310|emb|CCC45489.1| PPE-family protein [Mycobacterium canettii CIPT 140010059] Length=409 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 97/175 (56%), Positives = 119/175 (68%), Gaps = 0/175 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 F+ L PE+NS RM+ G G + AAAAAWD LA EL AA SF SV +GLA + WQGP+ Sbjct 2 SFVVLPPEINSLRMFIGAGTAPMLAAAAAWDGLAEELGTAAQSFASVTAGLAGQAWQGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MAA AA + GWL AAA Q+ GAA QA+ +A +EAA AATV PA VAANR L Sbjct 62 ALAMAAAAAPYAGWLTAAAAQSAGAAGQARAVASIFEAAQAATVLPAAVAANRDAFVQLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHELP 177 +N+FGQN P IAAAE +YE+MWA DV AM Y++ ASA+ A++ PW LL P Sbjct 122 MTNLFGQNAPLIAAAEGVYEEMWAADVAAMSGYYSGASAIAAQVVPWASLLQRFP 176 >gi|306779146|ref|ZP_07417483.1| PPE family protein [Mycobacterium tuberculosis SUMu002] gi|306787301|ref|ZP_07425623.1| PPE family protein [Mycobacterium tuberculosis SUMu004] gi|308327856|gb|EFP16707.1| PPE family protein [Mycobacterium tuberculosis SUMu002] gi|308336013|gb|EFP24864.1| PPE family protein [Mycobacterium tuberculosis SUMu004] Length=3186 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 100/174 (58%), Positives = 122/174 (71%), Gaps = 0/174 (0%) Query 3 DFLTLSPEVNSARMYAGGGPGSLSAAAAAWDELAAELWLAAASFESVCSGLADRWWQGPS 62 DF+ +PEVNS RMY G G G + AAAAAWD LA EL +AA+ F SV SGLAD W+GP+ Sbjct 2 DFVVSAPEVNSLRMYLGAGSGPMLAAAAAWDGLADELAVAASWFGSVTSGLADAAWRGPA 61 Query 63 SRMMAAQAARHTGWLAAAATQAEGAASQAQTMALAYEAAFAATVHPALVAANRALVAWLA 122 + MA A + GWL +A QAE AA+QA+ +EAA AATVHPA+VAANRA++ L Sbjct 62 AVAMARAVAPYLGWLISATAQAEQAAAQARVAVATFEAARAATVHPAIVAANRAVLVSLV 121 Query 123 GSNVFGQNTPAIAAAEAIYEQMWAQDVVAMLNYHAVASAVGARLRPWQQLLHEL 176 SN+ G N PAIAA EA YE+MWAQDV AM+ YHA ASA + L P+ Q L +L Sbjct 122 SSNLLGFNAPAIAATEAAYERMWAQDVAAMVGYHAGASAAVSALMPFTQQLKKL 175 Lambda K H 0.316 0.129 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1022124403104 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40