BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3542c Length=311 Score E Sequences producing significant alignments: (Bits) Value gi|15610678|ref|NP_218059.1| hypothetical protein Rv3542c [Mycob... 627 6e-178 gi|340628506|ref|YP_004746958.1| hypothetical protein MCAN_35531... 626 1e-177 gi|289572194|ref|ZP_06452421.1| conserved hypothetical protein [... 625 2e-177 gi|289445134|ref|ZP_06434878.1| conserved hypothetical protein [... 624 6e-177 gi|294993660|ref|ZP_06799351.1| hypothetical protein Mtub2_03906... 622 3e-176 gi|308374914|ref|ZP_07667898.1| hypothetical protein TMGG_01078 ... 575 4e-162 gi|183984997|ref|YP_001853288.1| hypothetical protein MMAR_5029 ... 540 9e-152 gi|296166571|ref|ZP_06849001.1| conserved hypothetical protein [... 534 7e-150 gi|118619288|ref|YP_907620.1| hypothetical protein MUL_4103 [Myc... 531 6e-149 gi|240172832|ref|ZP_04751491.1| hypothetical protein MkanA1_2620... 530 2e-148 gi|41406623|ref|NP_959459.1| hypothetical protein MAP0525 [Mycob... 511 4e-143 gi|342862368|ref|ZP_08719008.1| hypothetical protein MCOL_25873 ... 509 3e-142 gi|254822624|ref|ZP_05227625.1| hypothetical protein MintA_22024... 506 1e-141 gi|120406203|ref|YP_956032.1| hypothetical protein Mvan_5255 [My... 495 3e-138 gi|118468265|ref|YP_890218.1| hypothetical protein MSMEG_5992 [M... 474 9e-132 gi|145222103|ref|YP_001132781.1| hypothetical protein Mflv_1511 ... 470 1e-130 gi|126437623|ref|YP_001073314.1| hypothetical protein Mjls_5059 ... 464 6e-129 gi|108801637|ref|YP_641834.1| hypothetical protein Mmcs_4674 [My... 463 1e-128 gi|333992329|ref|YP_004524943.1| hypothetical protein JDM601_368... 454 7e-126 gi|169627719|ref|YP_001701368.1| hypothetical protein MAB_0616 [... 448 6e-124 gi|312138120|ref|YP_004005456.1| hypothetical protein REQ_06540 ... 422 5e-116 gi|325674975|ref|ZP_08154662.1| hypothetical protein HMPREF0724_... 421 6e-116 gi|229494536|ref|ZP_04388299.1| conserved hypothetical protein [... 420 1e-115 gi|343925845|ref|ZP_08765360.1| hypothetical protein GOALK_050_0... 419 4e-115 gi|326384606|ref|ZP_08206285.1| hypothetical protein SCNU_16778 ... 417 8e-115 gi|226304199|ref|YP_002764157.1| hypothetical protein RER_07100 ... 417 1e-114 gi|262200883|ref|YP_003272091.1| hypothetical protein Gbro_0885 ... 416 2e-114 gi|111021458|ref|YP_704430.1| hypothetical protein RHA1_ro04486 ... 413 1e-113 gi|226363824|ref|YP_002781606.1| hypothetical protein ROP_44140 ... 411 5e-113 gi|54022415|ref|YP_116657.1| hypothetical protein nfa4510 [Nocar... 390 1e-106 gi|319948637|ref|ZP_08022761.1| hypothetical protein ES5_04623 [... 382 4e-104 gi|296141527|ref|YP_003648770.1| hypothetical protein Tpau_3856 ... 321 8e-86 gi|300784417|ref|YP_003764708.1| hypothetical protein AMED_2511 ... 319 4e-85 gi|302525652|ref|ZP_07277994.1| conserved hypothetical protein [... 313 2e-83 gi|333918579|ref|YP_004492160.1| hypothetical protein AS9A_0908 ... 306 2e-81 gi|159038394|ref|YP_001537647.1| hypothetical protein Sare_2821 ... 289 4e-76 gi|145595148|ref|YP_001159445.1| hypothetical protein Strop_2623... 279 4e-73 gi|311744300|ref|ZP_07718104.1| conserved hypothetical protein [... 270 2e-70 gi|271969393|ref|YP_003343589.1| hypothetical protein Sros_8196 ... 269 5e-70 gi|148556220|ref|YP_001263802.1| hypothetical protein Swit_3318 ... 228 1e-57 gi|269127688|ref|YP_003301058.1| hypothetical protein Tcur_3482 ... 208 9e-52 gi|312141661|ref|YP_004008997.1| hypothetical protein REQ_43550 ... 207 2e-51 gi|111022789|ref|YP_705761.1| hypothetical protein RHA1_ro05826 ... 207 2e-51 gi|325673082|ref|ZP_08152776.1| hypothetical protein HMPREF0724_... 206 4e-51 gi|229488465|ref|ZP_04382331.1| conserved hypothetical protein [... 200 2e-49 gi|226308563|ref|YP_002768523.1| hypothetical protein RER_50760 ... 199 4e-49 gi|288918163|ref|ZP_06412519.1| protein of unknown function DUF3... 197 2e-48 gi|254384132|ref|ZP_04999477.1| conserved hypothetical protein [... 197 3e-48 gi|157961959|ref|YP_001501993.1| hypothetical protein Spea_2138 ... 196 6e-48 gi|329895411|ref|ZP_08270992.1| hypothetical protein IMCC3088_14... 190 2e-46 >gi|15610678|ref|NP_218059.1| hypothetical protein Rv3542c [Mycobacterium tuberculosis H37Rv] gi|15843154|ref|NP_338191.1| hypothetical protein MT3646 [Mycobacterium tuberculosis CDC1551] gi|31794718|ref|NP_857211.1| hypothetical protein Mb3572c [Mycobacterium bovis AF2122/97] 45 more sequence titles Length=311 Score = 627 bits (1617), Expect = 6e-178, Method: Compositional matrix adjust. Identities = 310/311 (99%), Positives = 311/311 (100%), Gaps = 0/311 (0%) Query 1 VTGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP 60 +TGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP Sbjct 1 MTGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP 60 Query 61 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ 120 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ Sbjct 61 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ 120 Query 121 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDL 180 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDL Sbjct 121 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDL 180 Query 181 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR 240 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR Sbjct 181 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR 240 Query 241 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP 300 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP Sbjct 241 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP 300 Query 301 DWSLYAWEPDE 311 DWSLYAWEPDE Sbjct 301 DWSLYAWEPDE 311 >gi|340628506|ref|YP_004746958.1| hypothetical protein MCAN_35531 [Mycobacterium canettii CIPT 140010059] gi|340006696|emb|CCC45884.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=311 Score = 626 bits (1615), Expect = 1e-177, Method: Compositional matrix adjust. Identities = 309/311 (99%), Positives = 311/311 (100%), Gaps = 0/311 (0%) Query 1 VTGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP 60 +TGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP Sbjct 1 MTGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP 60 Query 61 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ 120 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ Sbjct 61 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ 120 Query 121 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDL 180 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVP+DL Sbjct 121 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPEDL 180 Query 181 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR 240 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR Sbjct 181 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR 240 Query 241 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP 300 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP Sbjct 241 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP 300 Query 301 DWSLYAWEPDE 311 DWSLYAWEPDE Sbjct 301 DWSLYAWEPDE 311 >gi|289572194|ref|ZP_06452421.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|339633540|ref|YP_004725182.1| hypothetical protein MAF_35540 [Mycobacterium africanum GM041182] gi|289536625|gb|EFD41203.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|339332896|emb|CCC28623.1| conserved hypothetical protein [Mycobacterium africanum GM041182] Length=311 Score = 625 bits (1613), Expect = 2e-177, Method: Compositional matrix adjust. Identities = 309/311 (99%), Positives = 311/311 (100%), Gaps = 0/311 (0%) Query 1 VTGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP 60 +TGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP Sbjct 1 MTGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP 60 Query 61 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ 120 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ Sbjct 61 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ 120 Query 121 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDL 180 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDL Sbjct 121 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDL 180 Query 181 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR 240 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLR+PPVPAVWQDKSVPINYVVSSGR Sbjct 181 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRYPPVPAVWQDKSVPINYVVSSGR 240 Query 241 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP 300 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP Sbjct 241 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP 300 Query 301 DWSLYAWEPDE 311 DWSLYAWEPDE Sbjct 301 DWSLYAWEPDE 311 >gi|289445134|ref|ZP_06434878.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289418092|gb|EFD15293.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=311 Score = 624 bits (1609), Expect = 6e-177, Method: Compositional matrix adjust. Identities = 309/311 (99%), Positives = 310/311 (99%), Gaps = 0/311 (0%) Query 1 VTGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP 60 +TGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP Sbjct 1 MTGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP 60 Query 61 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ 120 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ Sbjct 61 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ 120 Query 121 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDL 180 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDL Sbjct 121 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDL 180 Query 181 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR 240 DPDAMM PSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR Sbjct 181 DPDAMMCPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR 240 Query 241 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP 300 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP Sbjct 241 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP 300 Query 301 DWSLYAWEPDE 311 DWSLYAWEPDE Sbjct 301 DWSLYAWEPDE 311 >gi|294993660|ref|ZP_06799351.1| hypothetical protein Mtub2_03906 [Mycobacterium tuberculosis 210] gi|297733208|ref|ZP_06962326.1| hypothetical protein MtubKR_19050 [Mycobacterium tuberculosis KZN R506] gi|306974012|ref|ZP_07486673.1| hypothetical protein TMJG_00788 [Mycobacterium tuberculosis SUMu010] 22 more sequence titles Length=308 Score = 622 bits (1603), Expect = 3e-176, Method: Compositional matrix adjust. Identities = 307/308 (99%), Positives = 308/308 (100%), Gaps = 0/308 (0%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 +SDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV Sbjct 1 MSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 60 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI Sbjct 61 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 120 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDLDPD 183 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDLDPD Sbjct 121 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDLDPD 180 Query 184 AMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGTV 243 AMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGTV Sbjct 181 AMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGTV 240 Query 244 FSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFPDWS 303 FSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFPDWS Sbjct 241 FSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFPDWS 300 Query 304 LYAWEPDE 311 LYAWEPDE Sbjct 301 LYAWEPDE 308 >gi|308374914|ref|ZP_07667898.1| hypothetical protein TMGG_01078 [Mycobacterium tuberculosis SUMu007] gi|308348056|gb|EFP36907.1| hypothetical protein TMGG_01078 [Mycobacterium tuberculosis SUMu007] Length=283 Score = 575 bits (1481), Expect = 4e-162, Method: Compositional matrix adjust. Identities = 282/283 (99%), Positives = 283/283 (100%), Gaps = 0/283 (0%) Query 29 VNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGLGGVRPKDDPLG 88 +NQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGLGGVRPKDDPLG Sbjct 1 MNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGLGGVRPKDDPLG 60 Query 89 PIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTALGEGWFINQHI 148 PIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTALGEGWFINQHI Sbjct 61 PIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTALGEGWFINQHI 120 Query 149 VWQVGDEDVAEMNWRILKFKPAGSPSSVPDDLDPDAMMRPSSSRDTAFFWDGVKAHELRI 208 VWQVGDEDVAEMNWRILKFKPAGSPSSVPDDLDPDAMMRPSSSRDTAFFWDGVKAHELRI Sbjct 121 VWQVGDEDVAEMNWRILKFKPAGSPSSVPDDLDPDAMMRPSSSRDTAFFWDGVKAHELRI 180 Query 209 QRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGTVFSFVVHHAPKVPGRTVPFVIALVEL 268 QRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGTVFSFVVHHAPKVPGRTVPFVIALVEL Sbjct 181 QRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGTVFSFVVHHAPKVPGRTVPFVIALVEL 240 Query 269 EEGVRMLGELRGADPARVAIGMPVRATYIDFPDWSLYAWEPDE 311 EEGVRMLGELRGADPARVAIGMPVRATYIDFPDWSLYAWEPDE Sbjct 241 EEGVRMLGELRGADPARVAIGMPVRATYIDFPDWSLYAWEPDE 283 >gi|183984997|ref|YP_001853288.1| hypothetical protein MMAR_5029 [Mycobacterium marinum M] gi|183178323|gb|ACC43433.1| conserved hypothetical protein [Mycobacterium marinum M] Length=316 Score = 540 bits (1392), Expect = 9e-152, Method: Compositional matrix adjust. Identities = 267/315 (85%), Positives = 284/315 (91%), Gaps = 8/315 (2%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 +SDI E VAQ+KAAGPSKPR RDPVNQPMINNWVEAIGD+NPIY DDAAARA GHPGIV Sbjct 1 MSDIHEIVAQVKAAGPSKPRAGRDPVNQPMINNWVEAIGDQNPIYADDAAARAVGHPGIV 60 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAMIQVWTMMGLGGVR DDPL PIIKLFDDAGYIGVVATNCEQTYHRYL PGE VSI Sbjct 61 APPAMIQVWTMMGLGGVRADDDPLPPIIKLFDDAGYIGVVATNCEQTYHRYLQPGELVSI 120 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKP--AGSPSSVPDDLD 181 SAELGDVVGPKQTALGEGWFINQHI+WQVGDEDVAEMNWRILKFKP +P++VPDDLD Sbjct 121 SAELGDVVGPKQTALGEGWFINQHIIWQVGDEDVAEMNWRILKFKPRAESAPTNVPDDLD 180 Query 182 PDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRG 241 PDAMMRPSSSRDTAFFWDGVKAHELRIQR DGSL+HPPVPAVWQDK+ PI+YVVS+G G Sbjct 181 PDAMMRPSSSRDTAFFWDGVKAHELRIQRRPDGSLQHPPVPAVWQDKAEPIDYVVSTGTG 240 Query 242 TVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF-- 299 TVFSFVVHHAPKVPGRT+PFVIALVEL+EGVRMLGELR +P +V IGMPVR YIDF Sbjct 241 TVFSFVVHHAPKVPGRTLPFVIALVELDEGVRMLGELRNVEPEQVEIGMPVRTVYIDFPA 300 Query 300 ----PDWSLYAWEPD 310 P+W+LYAWEPD Sbjct 301 GASGPEWTLYAWEPD 315 >gi|296166571|ref|ZP_06849001.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898057|gb|EFG77633.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=317 Score = 534 bits (1375), Expect = 7e-150, Method: Compositional matrix adjust. Identities = 260/315 (83%), Positives = 285/315 (91%), Gaps = 9/315 (2%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 ++DI EAVA+IKAAG KPR RDPVNQPMINNWVEAIGDRNPIYVD+AAARA GHPGIV Sbjct 1 MTDIHEAVAEIKAAGGPKPRAGRDPVNQPMINNWVEAIGDRNPIYVDEAAARAVGHPGIV 60 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAMIQVWTM GLGG RPKDDP+GPI++LFDDAGYIGVVATNCEQTYHRYL PGE VSI Sbjct 61 APPAMIQVWTMFGLGGERPKDDPMGPIMQLFDDAGYIGVVATNCEQTYHRYLQPGEHVSI 120 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSP---SSVPDDL 180 ++E+GDV+GPKQT LGEG+FINQHI+W+VGDEDVAEMNWRILKFKP S SSVP DL Sbjct 121 TSEMGDVIGPKQTGLGEGYFINQHIIWRVGDEDVAEMNWRILKFKPRESSEPTSSVPADL 180 Query 181 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR 240 DPD MMRP+SSRDTAFFW+GVKAHELRIQR DGSL+HPPVPAVWQDK+ PI+YVV+SG+ Sbjct 181 DPDVMMRPASSRDTAFFWEGVKAHELRIQRRPDGSLQHPPVPAVWQDKTAPIDYVVASGK 240 Query 241 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF- 299 GTVFSFVVHHAPKVPGRT+PFVIALVELEEGVRMLGELRG DPA+V IGMPVRATYIDF Sbjct 241 GTVFSFVVHHAPKVPGRTLPFVIALVELEEGVRMLGELRGVDPAKVKIGMPVRATYIDFP 300 Query 300 -----PDWSLYAWEP 309 P+W+LYAWEP Sbjct 301 AGDSGPEWTLYAWEP 315 >gi|118619288|ref|YP_907620.1| hypothetical protein MUL_4103 [Mycobacterium ulcerans Agy99] gi|118571398|gb|ABL06149.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=316 Score = 531 bits (1367), Expect = 6e-149, Method: Compositional matrix adjust. Identities = 263/315 (84%), Positives = 281/315 (90%), Gaps = 8/315 (2%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 +SDI+E VAQ+KAAGPSKPR RDPVNQPMINNWVEAIGD+NPIY DD AARA GHPGIV Sbjct 1 MSDIREIVAQVKAAGPSKPRAGRDPVNQPMINNWVEAIGDQNPIYADDPAARAVGHPGIV 60 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAMIQVWTMMGL GVR DDPL PIIKLFDDAGYIGVVATNCEQTYHRYL GE VSI Sbjct 61 APPAMIQVWTMMGLSGVRADDDPLPPIIKLFDDAGYIGVVATNCEQTYHRYLQLGELVSI 120 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKP--AGSPSSVPDDLD 181 SAELGDVVGPKQTALGEGWFINQHI+WQVGDEDVAEMNWRILKFKP +P++VPDDLD Sbjct 121 SAELGDVVGPKQTALGEGWFINQHIIWQVGDEDVAEMNWRILKFKPRTESAPTNVPDDLD 180 Query 182 PDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRG 241 PDAMMRPSSSRDTAFFWDGVKAHELRIQR DGSL+HPP+PAVWQDK+ PI+YVVS G G Sbjct 181 PDAMMRPSSSRDTAFFWDGVKAHELRIQRRPDGSLQHPPLPAVWQDKAEPIDYVVSIGTG 240 Query 242 TVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF-- 299 TVFSFVVHHAPKVPGRT+PFVIALVEL+EGVRMLGELR +P +V IGMPVR YIDF Sbjct 241 TVFSFVVHHAPKVPGRTLPFVIALVELDEGVRMLGELRNVEPEQVEIGMPVRTVYIDFPA 300 Query 300 ----PDWSLYAWEPD 310 P+W+LYAWEPD Sbjct 301 GASGPEWTLYAWEPD 315 >gi|240172832|ref|ZP_04751491.1| hypothetical protein MkanA1_26202 [Mycobacterium kansasii ATCC 12478] Length=315 Score = 530 bits (1364), Expect = 2e-148, Method: Compositional matrix adjust. Identities = 260/314 (83%), Positives = 281/314 (90%), Gaps = 7/314 (2%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 ++DI+EAV QIKAAG SKPR ARDPVNQPMINNWVEAIGDRNPIYVDD AARA GHPGIV Sbjct 1 MTDIREAVTQIKAAGSSKPRAARDPVNQPMINNWVEAIGDRNPIYVDDDAARAVGHPGIV 60 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAMIQVWTM GLGG RPKDDPLGP++KLFDDAGYIGVVATNCEQ YHRYL PGEQV+I Sbjct 61 APPAMIQVWTMYGLGGQRPKDDPLGPVMKLFDDAGYIGVVATNCEQIYHRYLRPGEQVTI 120 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPS-SVPDDLDP 182 +AELGDVVGPKQTALGEGWF+NQH VW+VGDEDVAEM+WRILKF+PA +P +VPDDLDP Sbjct 121 TAELGDVVGPKQTALGEGWFVNQHTVWRVGDEDVAEMDWRILKFRPATTPGVAVPDDLDP 180 Query 183 DAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGT 242 DAMMRPS SRDTAFFW+GV AHELRIQR DG+L+HPPVPAVWQ+ S PI+Y VSSGRG Sbjct 181 DAMMRPSLSRDTAFFWEGVAAHELRIQRRPDGTLQHPPVPAVWQEPSAPIDYAVSSGRGV 240 Query 243 VFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF--- 299 VFSFVVHHAPKVPGR VPFVIALVELEEGVRMLGELR DP+RV IG PVRA YIDF Sbjct 241 VFSFVVHHAPKVPGRIVPFVIALVELEEGVRMLGELRNVDPSRVEIGTPVRAMYIDFPAG 300 Query 300 ---PDWSLYAWEPD 310 P+W+LYAWEPD Sbjct 301 DSGPEWTLYAWEPD 314 >gi|41406623|ref|NP_959459.1| hypothetical protein MAP0525 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463131|ref|YP_879899.1| hypothetical protein MAV_0619 [Mycobacterium avium 104] gi|254773576|ref|ZP_05215092.1| hypothetical protein MaviaA2_02715 [Mycobacterium avium subsp. avium ATCC 25291] gi|41394972|gb|AAS02842.1| hypothetical protein MAP_0525 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118164418|gb|ABK65315.1| conserved hypothetical protein [Mycobacterium avium 104] gi|336458413|gb|EGO37387.1| putative nucleic-acid-binding protein containing a Zn-ribbon [Mycobacterium avium subsp. paratuberculosis S397] Length=317 Score = 511 bits (1317), Expect = 4e-143, Method: Compositional matrix adjust. Identities = 257/316 (82%), Positives = 286/316 (91%), Gaps = 9/316 (2%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 ++DI EA+A+IKAAG KPR RDPVNQPMINNWVEAIGDRNPIYVD+AAARA GHPGIV Sbjct 1 MTDIAEAIAEIKAAGGPKPRAGRDPVNQPMINNWVEAIGDRNPIYVDEAAARAVGHPGIV 60 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAMIQVWTM GLGG RPKDDP+GPI++LFD+AGY+GVVATNCEQTYHRYL PGEQVSI Sbjct 61 APPAMIQVWTMFGLGGERPKDDPMGPIMELFDNAGYVGVVATNCEQTYHRYLRPGEQVSI 120 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGS---PSSVPDDL 180 ++E+GDV+GPKQTALGEGWFINQHI+W+VGDEDVAEMNWRILKF+P S S VPDDL Sbjct 121 TSEMGDVIGPKQTALGEGWFINQHIIWRVGDEDVAEMNWRILKFRPRESDAAASPVPDDL 180 Query 181 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR 240 DP MMRP+SSRDTAFFW+GVKAHELRIQR DGSL+HPPVPAVWQDK+ PI+YVV+SG+ Sbjct 181 DPATMMRPASSRDTAFFWEGVKAHELRIQRRPDGSLQHPPVPAVWQDKTAPIDYVVASGK 240 Query 241 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF- 299 GTV+SFVVHHAPKVPGRT+PFVIALVEL EGVRMLGELRG DPARV IG+PVRATY+DF Sbjct 241 GTVYSFVVHHAPKVPGRTLPFVIALVELAEGVRMLGELRGIDPARVRIGLPVRATYLDFP 300 Query 300 -----PDWSLYAWEPD 310 P+WSLYAWEPD Sbjct 301 ADDNGPEWSLYAWEPD 316 >gi|342862368|ref|ZP_08719008.1| hypothetical protein MCOL_25873 [Mycobacterium colombiense CECT 3035] gi|342130039|gb|EGT83373.1| hypothetical protein MCOL_25873 [Mycobacterium colombiense CECT 3035] Length=320 Score = 509 bits (1310), Expect = 3e-142, Method: Compositional matrix adjust. Identities = 247/315 (79%), Positives = 278/315 (89%), Gaps = 9/315 (2%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 ++DI+EAVA+I A +KPR ARDPVNQP INNWVEA+GD NPIYVD+AAA+AAGHPGIV Sbjct 1 MTDIKEAVAEITATVVAKPRDARDPVNQPTINNWVEALGDANPIYVDEAAAKAAGHPGIV 60 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAMIQVWTM GLGG RP DDP+GPI++LFDDAGYIGVVATNCEQTYHRYL PGE+V++ Sbjct 61 APPAMIQVWTMFGLGGERPTDDPMGPIMQLFDDAGYIGVVATNCEQTYHRYLRPGERVTV 120 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKP---AGSPSSVPDDL 180 +E+ DVVGPKQT LGEGWFINQHI W+VGDE+VAEM WRILKF+P +G+ SVP DL Sbjct 121 HSEMRDVVGPKQTGLGEGWFINQHITWRVGDENVAEMEWRILKFRPREDSGATGSVPVDL 180 Query 181 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR 240 D DAMMRP+ SRDTAFFW+GVKAHELRIQRLADG+L+HPPVPAVWQDK+ PI+Y V+SGR Sbjct 181 DADAMMRPAVSRDTAFFWEGVKAHELRIQRLADGTLQHPPVPAVWQDKAEPIDYAVASGR 240 Query 241 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF- 299 GTVFSFVVHHAPKVPGRT+PFVIAL+ELEEGVRMLGELR D A V IGMPVRATYIDF Sbjct 241 GTVFSFVVHHAPKVPGRTLPFVIALIELEEGVRMLGELRNVDHAEVKIGMPVRATYIDFP 300 Query 300 -----PDWSLYAWEP 309 P+WSLYAWEP Sbjct 301 AGESGPEWSLYAWEP 315 >gi|254822624|ref|ZP_05227625.1| hypothetical protein MintA_22024 [Mycobacterium intracellulare ATCC 13950] Length=320 Score = 506 bits (1304), Expect = 1e-141, Method: Compositional matrix adjust. Identities = 246/315 (79%), Positives = 277/315 (88%), Gaps = 9/315 (2%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 ++DI+EAVA+I A + PR ARDPVNQP INNWVEA+GDRNPIYVD+AAARAAGHPGIV Sbjct 1 MTDIKEAVAEITATVVAAPREARDPVNQPTINNWVEALGDRNPIYVDEAAARAAGHPGIV 60 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAMIQVWTM GLGG RP DDP+GPI++LFD+AGYIGVVATNCEQTYHRYL PGEQV++ Sbjct 61 APPAMIQVWTMFGLGGERPTDDPMGPIMQLFDEAGYIGVVATNCEQTYHRYLRPGEQVTV 120 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKP---AGSPSSVPDDL 180 +E+ DVVGPKQT LGEGWFINQHI W+VGDEDVAEM WRILKF+P +G+ +SVP DL Sbjct 121 VSEMRDVVGPKQTGLGEGWFINQHITWRVGDEDVAEMAWRILKFRPREDSGATASVPQDL 180 Query 181 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR 240 D DAMMRP+ SRDTAFFW+GV AHELRIQRL DG+L+HPPVPAVWQDK+ PI++ V+SGR Sbjct 181 DADAMMRPAVSRDTAFFWEGVAAHELRIQRLPDGALQHPPVPAVWQDKAEPIDFAVASGR 240 Query 241 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF- 299 GTVFS+VVHHAPKVPGRT+PFVIALVELEEGVRMLGELR D A V IGMPVRATYIDF Sbjct 241 GTVFSYVVHHAPKVPGRTLPFVIALVELEEGVRMLGELRNVDHAEVKIGMPVRATYIDFP 300 Query 300 -----PDWSLYAWEP 309 P+WSLYAWEP Sbjct 301 AGESGPEWSLYAWEP 315 >gi|120406203|ref|YP_956032.1| hypothetical protein Mvan_5255 [Mycobacterium vanbaalenii PYR-1] gi|119959021|gb|ABM16026.1| protein of unknown function DUF35 [Mycobacterium vanbaalenii PYR-1] Length=324 Score = 495 bits (1275), Expect = 3e-138, Method: Compositional matrix adjust. Identities = 239/315 (76%), Positives = 273/315 (87%), Gaps = 8/315 (2%) Query 3 GVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGI 62 G+SD+Q A+A+IKAAG SKPR RDPVNQPMI++WV+AIGD+NPIYVDD AA+AAGHPGI Sbjct 8 GMSDLQSAIAEIKAAGRSKPRAGRDPVNQPMIHHWVDAIGDKNPIYVDDEAAKAAGHPGI 67 Query 63 VAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVS 122 VAPPAMIQVWTM GLG R DDPL ++KLFDDAGY+GVVATNCEQTYHRYL PGE+V+ Sbjct 68 VAPPAMIQVWTMGGLGQGRSDDDPLSKMMKLFDDAGYVGVVATNCEQTYHRYLQPGEEVT 127 Query 123 ISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPA--GSPSSVPDDL 180 I+AEL DV+GPKQTALGEG+FINQ I WQVGDEDVAEM WRI+KFKPA + VP+DL Sbjct 128 IAAELTDVIGPKQTALGEGFFINQKITWQVGDEDVAEMMWRIMKFKPAERAKGAQVPEDL 187 Query 181 DPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGR 240 DPD +MRP+SSRDT FFWDGV AHELRIQR DG+L+HPPVPAVWQ + PI+Y V+SG Sbjct 188 DPDKLMRPASSRDTQFFWDGVNAHELRIQRRPDGTLQHPPVPAVWQSQDAPIDYAVASGN 247 Query 241 GTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP 300 GTV+S+VVHHAPKVPGRT+PFVIALVEL+EGVRMLGELRG DP +V IG+PVRATYIDFP Sbjct 248 GTVYSYVVHHAPKVPGRTLPFVIALVELDEGVRMLGELRGVDPDQVEIGLPVRATYIDFP 307 Query 301 D------WSLYAWEP 309 D W+LYAWEP Sbjct 308 DSEVSPAWTLYAWEP 322 >gi|118468265|ref|YP_890218.1| hypothetical protein MSMEG_5992 [Mycobacterium smegmatis str. MC2 155] gi|118169552|gb|ABK70448.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=321 Score = 474 bits (1219), Expect = 9e-132, Method: Compositional matrix adjust. Identities = 232/313 (75%), Positives = 261/313 (84%), Gaps = 8/313 (2%) Query 5 SDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVA 64 D+Q + +IKA G S PR RDPVNQPMI++WV+AIGD+NPIYVD AA+AAGHPGIVA Sbjct 7 EDLQAGIEKIKAEGKSDPRKGRDPVNQPMIHHWVDAIGDKNPIYVDQEAAKAAGHPGIVA 66 Query 65 PPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSIS 124 PPAMIQVWTM GLG R DDPL I+KLFDDAGY+GVVATNCEQTYHRYL PGE+++I Sbjct 67 PPAMIQVWTMGGLGAGRSDDDPLSKIMKLFDDAGYVGVVATNCEQTYHRYLQPGEELTIH 126 Query 125 AELGDVVGPKQTALGEGWFINQHIVWQVGD-EDVAEMNWRILKFKP-AGSPSSVPDDLDP 182 AE+ DVVGPKQTALGEG+FINQ I W + E VAEMNWRI+KFKP +VPDDLDP Sbjct 127 AEITDVVGPKQTALGEGYFINQLITWTTEEGEAVAEMNWRIMKFKPREDQKPAVPDDLDP 186 Query 183 DAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGT 242 D +MRP+SSRDT FFWDGV AHELRIQR DG+L+HPPVPAVWQDK PI+YVV+SG GT Sbjct 187 DKLMRPASSRDTQFFWDGVNAHELRIQRRPDGTLQHPPVPAVWQDKEQPIDYVVASGNGT 246 Query 243 VFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFPD- 301 VFS+VVHHAPKVPGRT+PFVIALVELEEGVRMLGELR DP +V IGMPVRAT+IDFPD Sbjct 247 VFSYVVHHAPKVPGRTLPFVIALVELEEGVRMLGELRNVDPDQVQIGMPVRATFIDFPDS 306 Query 302 -----WSLYAWEP 309 W+LYAWEP Sbjct 307 EISPAWTLYAWEP 319 >gi|145222103|ref|YP_001132781.1| hypothetical protein Mflv_1511 [Mycobacterium gilvum PYR-GCK] gi|315442543|ref|YP_004075422.1| nucleic-acid-binding protein containing a Zn-ribbon [Mycobacterium sp. Spyr1] gi|145214589|gb|ABP43993.1| protein of unknown function DUF35 [Mycobacterium gilvum PYR-GCK] gi|315260846|gb|ADT97587.1| predicted nucleic-acid-binding protein containing a Zn-ribbon [Mycobacterium sp. Spyr1] Length=317 Score = 470 bits (1210), Expect = 1e-130, Method: Compositional matrix adjust. Identities = 232/313 (75%), Positives = 264/313 (85%), Gaps = 8/313 (2%) Query 5 SDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVA 64 +D+Q + +I AAG S+PR RDPVNQPMI++WV+AIGDRNPIYVDD AARAAGHPGIVA Sbjct 3 ADLQAGIEKITAAGRSEPRAGRDPVNQPMIHHWVDAIGDRNPIYVDDEAARAAGHPGIVA 62 Query 65 PPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSIS 124 PPAMIQVWTM GLG R DDPL I++LFD+AGY+GVVATNCEQTYHRYL PGE+++I Sbjct 63 PPAMIQVWTMGGLGQGRSDDDPLSKIMELFDEAGYVGVVATNCEQTYHRYLQPGEELTIH 122 Query 125 AELGDVVGPKQTALGEGWFINQHIVWQVGD-EDVAEMNWRILKFKP-AGSPSSVPDDLDP 182 A++ DVVGPKQTALGEG+FINQ I W VGD E VAEMNWRI+KFKP A VP+DLDP Sbjct 123 ADITDVVGPKQTALGEGFFINQLITWTVGDGETVAEMNWRIMKFKPRAEDKPPVPEDLDP 182 Query 183 DAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGT 242 D +MRP+SS+DT FFWDGV AHELRIQR DGSL+HPPVPAVW DK P +YVV+SG GT Sbjct 183 DKLMRPASSKDTRFFWDGVNAHELRIQRRPDGSLQHPPVPAVWADKDAPTDYVVASGNGT 242 Query 243 VFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFPD- 301 VFSFVVHHAP+VPGR++PFVIALVEL+EGVRMLGELR DPA V IGMPVRATY+DFPD Sbjct 243 VFSFVVHHAPQVPGRSLPFVIALVELDEGVRMLGELRNVDPADVQIGMPVRATYLDFPDS 302 Query 302 -----WSLYAWEP 309 W+LYAWEP Sbjct 303 DVSPAWTLYAWEP 315 >gi|126437623|ref|YP_001073314.1| hypothetical protein Mjls_5059 [Mycobacterium sp. JLS] gi|126237423|gb|ABO00824.1| protein of unknown function DUF35 [Mycobacterium sp. JLS] Length=317 Score = 464 bits (1195), Expect = 6e-129, Method: Compositional matrix adjust. Identities = 226/313 (73%), Positives = 264/313 (85%), Gaps = 8/313 (2%) Query 5 SDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVA 64 +D+Q + +IKA G S+PR RDPVNQPMI++WV+AIGD+NPIYVDD AA+AAGHPGIVA Sbjct 3 ADLQPDIEKIKAEGRSEPRAGRDPVNQPMIHHWVDAIGDKNPIYVDDEAAKAAGHPGIVA 62 Query 65 PPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSIS 124 PPAMIQVWTM GLG R DDPL ++ LFD+AGY+GVVATNCEQTYHRYL PGE+++I Sbjct 63 PPAMIQVWTMGGLGQGRSDDDPLSKMMNLFDEAGYVGVVATNCEQTYHRYLQPGEEITIH 122 Query 125 AELGDVVGPKQTALGEGWFINQHIVWQV-GDEDVAEMNWRILKFKP-AGSPSSVPDDLDP 182 A++ DVVGPKQTALGEG+FINQ I W V G E VAEMNWRI+KFKP A +VP+DLDP Sbjct 123 ADITDVVGPKQTALGEGYFINQLITWTVDGGETVAEMNWRIMKFKPKADDRPAVPEDLDP 182 Query 183 DAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGT 242 D +MRP+SSRDT FFWDGV AHELRIQ DG+L+HPPVPAVW DK P++YVV++G GT Sbjct 183 DKLMRPASSRDTQFFWDGVNAHELRIQTRPDGTLQHPPVPAVWADKDAPVDYVVAAGTGT 242 Query 243 VFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFPD- 301 V+S+VVHHAPKVPGR++PFVIALVEL+EGVRMLGELRG DP+ V IGMPVRATYIDFPD Sbjct 243 VYSYVVHHAPKVPGRSLPFVIALVELDEGVRMLGELRGVDPSEVQIGMPVRATYIDFPDS 302 Query 302 -----WSLYAWEP 309 W+LYAWEP Sbjct 303 DVSPAWTLYAWEP 315 >gi|108801637|ref|YP_641834.1| hypothetical protein Mmcs_4674 [Mycobacterium sp. MCS] gi|119870788|ref|YP_940740.1| hypothetical protein Mkms_4760 [Mycobacterium sp. KMS] gi|108772056|gb|ABG10778.1| protein of unknown function DUF35 [Mycobacterium sp. MCS] gi|119696877|gb|ABL93950.1| protein of unknown function DUF35 [Mycobacterium sp. KMS] Length=318 Score = 463 bits (1192), Expect = 1e-128, Method: Compositional matrix adjust. Identities = 224/312 (72%), Positives = 264/312 (85%), Gaps = 8/312 (2%) Query 6 DIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAP 65 D+Q + +IKA G S+PR RDPVNQPMI++WV+AIGD+NPIYVD+ AA+AAGHPGIVAP Sbjct 5 DLQPDIEKIKAEGKSEPRAGRDPVNQPMIHHWVDAIGDKNPIYVDEEAAKAAGHPGIVAP 64 Query 66 PAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISA 125 PAMIQVWTM GLG R DDPL ++ LFDDAGY+GVVATNCEQTYHRYL PGE+++I A Sbjct 65 PAMIQVWTMGGLGQGRSDDDPLSKMMNLFDDAGYVGVVATNCEQTYHRYLQPGEEITIHA 124 Query 126 ELGDVVGPKQTALGEGWFINQHIVWQV-GDEDVAEMNWRILKFKP-AGSPSSVPDDLDPD 183 ++ +VVGPKQTALGEG+FINQ I W V G E VAEMNWRI+KFKP A +VP+DLDPD Sbjct 125 DITEVVGPKQTALGEGYFINQLITWTVDGGETVAEMNWRIMKFKPTADDRPAVPEDLDPD 184 Query 184 AMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGTV 243 +MRP+SS+DT FFWDGV AHELRIQ+ DG+L+HPPVPAVW DK P++YVV++G GTV Sbjct 185 KLMRPASSKDTQFFWDGVNAHELRIQKRPDGTLQHPPVPAVWADKDAPVDYVVAAGTGTV 244 Query 244 FSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFPD-- 301 +S+VVHHAPKVPGR++PFVIALVEL+EGVRMLGELRG DP+ V IGMPVRATYIDFPD Sbjct 245 YSYVVHHAPKVPGRSLPFVIALVELDEGVRMLGELRGVDPSEVQIGMPVRATYIDFPDSD 304 Query 302 ----WSLYAWEP 309 W+LYAWEP Sbjct 305 VSPAWTLYAWEP 316 >gi|333992329|ref|YP_004524943.1| hypothetical protein JDM601_3689 [Mycobacterium sp. JDM601] gi|333488297|gb|AEF37689.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=322 Score = 454 bits (1169), Expect = 7e-126, Method: Compositional matrix adjust. Identities = 224/318 (71%), Positives = 265/318 (84%), Gaps = 10/318 (3%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 +SD+ + QI A+G S+PR RDPVNQPMI +WV+AIGD NPIY+D+ AA+AAGHPGIV Sbjct 1 MSDLSAGIEQILASGRSEPRTGRDPVNQPMIRHWVDAIGDENPIYIDEEAAKAAGHPGIV 60 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAMIQVWTMMGLGG RP DDPLG +++LFD AGY+GVVATNCEQTYHRYL PGE+VS+ Sbjct 61 APPAMIQVWTMMGLGGERPADDPLGKVMELFDGAGYVGVVATNCEQTYHRYLRPGEEVSV 120 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKP----AGSPSSVPDD 179 +AE+ D+VGPKQT LGEG+FI Q I W VGDE+VA+MNWRILKF P +P++ P+D Sbjct 121 TAEVTDIVGPKQTGLGEGYFITQKIRWWVGDENVADMNWRILKFVPKDAGDAAPAAAPED 180 Query 180 LDPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSG 239 LDP MMRPS S+D+A+FW+GV AHELRIQ+ DGSL+HPPVPA+W+DK+ ++VV+SG Sbjct 181 LDPAKMMRPSWSKDSAYFWEGVVAHELRIQQRPDGSLQHPPVPAIWKDKTETTDFVVASG 240 Query 240 RGTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF 299 GTVFSFVVHHAPKVPGR+VPFVIALVELEEGVRMLGELRG D A V IGMPVRA Y+DF Sbjct 241 TGTVFSFVVHHAPKVPGRSVPFVIALVELEEGVRMLGELRGVDAAAVRIGMPVRAIYLDF 300 Query 300 ------PDWSLYAWEPDE 311 P W+LYAWEP E Sbjct 301 PAGDAGPAWTLYAWEPVE 318 >gi|169627719|ref|YP_001701368.1| hypothetical protein MAB_0616 [Mycobacterium abscessus ATCC 19977] gi|169239686|emb|CAM60714.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=316 Score = 448 bits (1152), Expect = 6e-124, Method: Compositional matrix adjust. Identities = 221/312 (71%), Positives = 250/312 (81%), Gaps = 7/312 (2%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 V DIQE A+IKA GPS PRLARDPVNQ MINNWVEA+GDRNPIYVD+ AA+AAGHPGIV Sbjct 3 VVDIQEGFAKIKADGPSAPRLARDPVNQAMINNWVEAMGDRNPIYVDEEAAKAAGHPGIV 62 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAM QVWTM GL G R DDPLG ++ L D AGY VVATN EQ YHRYL GEQV+ Sbjct 63 APPAMAQVWTMAGLYGERSGDDPLGRVMALLDSAGYESVVATNYEQIYHRYLELGEQVTT 122 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKP-AGSPSSVPDDLDP 182 + E+ +V GPKQTALGE WFIN H W VGDE V EMNWRI+KF+P A + VP DLDP Sbjct 123 TNEVTEVFGPKQTALGESWFINIHAEWHVGDELVNEMNWRIMKFRPGAKKAADVPQDLDP 182 Query 183 DAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGT 242 +MRPS SRD+A+FW+GV AHELR+Q+ DGSL+HPPVPAVWQDK PI Y V+SGRGT Sbjct 183 SKLMRPSWSRDSAYFWEGVAAHELRLQKRPDGSLQHPPVPAVWQDKEAPIEYQVASGRGT 242 Query 243 VFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF--- 299 V+S+VVHHAP+VPGRT+PFVIALVEL+EGVRMLGELRG P V IG+PVRATY+DF Sbjct 243 VYSYVVHHAPQVPGRTLPFVIALVELDEGVRMLGELRGVSPDDVQIGLPVRATYLDFPAE 302 Query 300 ---PDWSLYAWE 308 P W+LYAWE Sbjct 303 GEDPAWTLYAWE 314 >gi|312138120|ref|YP_004005456.1| hypothetical protein REQ_06540 [Rhodococcus equi 103S] gi|311887459|emb|CBH46771.1| conserved hypothetical protein [Rhodococcus equi 103S] Length=335 Score = 422 bits (1084), Expect = 5e-116, Method: Compositional matrix adjust. Identities = 208/325 (64%), Positives = 245/325 (76%), Gaps = 19/325 (5%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 + I QIKA G SKPR RDP+N PMI NW+EAIGD NPIYVD+ AA AAGH GIV Sbjct 7 TAQILAGAEQIKAGGASKPRAGRDPINMPMIRNWLEAIGDENPIYVDEDAAVAAGHGGIV 66 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAM+QVWTM GLG VR +DDPLG + ++ DDAGY VVATNC+Q YHRYL PGE+V+I Sbjct 67 APPAMVQVWTMRGLGAVREEDDPLGRMTQILDDAGYTSVVATNCDQIYHRYLRPGEEVTI 126 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDED-----VAEMNWRILKFK------PAGS 172 + L +VVGPK+T LGEGWF W+V ED VAEM +RILKF PA Sbjct 127 ESTLEEVVGPKRTGLGEGWFFTTRNFWKVAREDGAGEIVAEMMFRILKFMPPAKDVPASE 186 Query 173 PSSVPDDLDPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPI 232 +SVP+DLDP MMRP+ SRDT FFWDGV AHELRIQ+ DGSL+HPPVPA+W+DK+ Sbjct 187 SASVPEDLDPTRMMRPTPSRDTQFFWDGVAAHELRIQQRPDGSLQHPPVPALWKDKAETT 246 Query 233 NYVVSSGRGTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPV 292 +YVV+SGRGTVFSFVVHHAP+VPGR++PFV+ALVELEEGVRMLGELR DP+ V +GMPV Sbjct 247 DYVVASGRGTVFSFVVHHAPRVPGRSLPFVVALVELEEGVRMLGELRDVDPSEVVVGMPV 306 Query 293 RATYIDFPD--------WSLYAWEP 309 +A ++DFP W+LYAW P Sbjct 307 QAQFLDFPGDGETGNEPWTLYAWRP 331 >gi|325674975|ref|ZP_08154662.1| hypothetical protein HMPREF0724_12444 [Rhodococcus equi ATCC 33707] gi|325554561|gb|EGD24236.1| hypothetical protein HMPREF0724_12444 [Rhodococcus equi ATCC 33707] Length=335 Score = 421 bits (1083), Expect = 6e-116, Method: Compositional matrix adjust. Identities = 209/325 (65%), Positives = 244/325 (76%), Gaps = 19/325 (5%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 + I QIKA G SKPR RDP+N PMI NW+EAIGD NPIYVD+ AA AAGH GIV Sbjct 7 TAQILAGAEQIKAGGASKPRAGRDPINMPMIRNWLEAIGDENPIYVDEDAAVAAGHGGIV 66 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAM QVWTM GLG VR +DDPLG + ++ DDAGY VVATNC+Q YHRYL PGE+V+I Sbjct 67 APPAMAQVWTMRGLGAVREEDDPLGRMTQILDDAGYTSVVATNCDQIYHRYLRPGEEVTI 126 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDED-----VAEMNWRILKFKP------AGS 172 + L +VVGPK+T LGEGWF W+V ED VAEM +RILKF P A Sbjct 127 ESTLEEVVGPKRTGLGEGWFFTTRNFWKVAREDGTGEIVAEMMFRILKFMPPAKDVPASE 186 Query 173 PSSVPDDLDPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPI 232 +SVP+DLDP MMRP+ SRDT FFWDGV AHELRIQ+ DGSL+HPPVPA+W+DK+ Sbjct 187 SASVPEDLDPTRMMRPTPSRDTQFFWDGVAAHELRIQQRPDGSLQHPPVPALWKDKAEAT 246 Query 233 NYVVSSGRGTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPV 292 +YVV+SGRGTVFSFVVHHAPKVPGR++PFV+ALVELEEGVRMLGELR DP+ V +GMPV Sbjct 247 DYVVASGRGTVFSFVVHHAPKVPGRSLPFVVALVELEEGVRMLGELRDVDPSEVVVGMPV 306 Query 293 RATYIDFPD--------WSLYAWEP 309 +A ++DFP W+LYAW P Sbjct 307 QAQFLDFPGDDETGNEPWTLYAWRP 331 >gi|229494536|ref|ZP_04388299.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229318898|gb|EEN84756.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=332 Score = 420 bits (1080), Expect = 1e-115, Method: Compositional matrix adjust. Identities = 207/314 (66%), Positives = 243/314 (78%), Gaps = 11/314 (3%) Query 7 IQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPP 66 I A +++ GPS PR RDPVN PMI NWVEAIGD NPIYVD++AARAAGH GIVAPP Sbjct 5 ILTAAERVREDGPSAPRAGRDPVNLPMIRNWVEAIGDENPIYVDESAARAAGHDGIVAPP 64 Query 67 AMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAE 126 AM QVWTM GLG +R DDPLG + + D+AG+ VVATNC+Q YHRYL PGE+V+IS+ Sbjct 65 AMAQVWTMRGLGAIREADDPLGRMTDILDEAGFTSVVATNCDQIYHRYLKPGEEVTISSV 124 Query 127 LGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSS---VPDDLDPD 183 L DVVGPK+T LGEGWF W+VG+E V+EM +RILKF P S SS VP DLD Sbjct 125 LEDVVGPKKTGLGEGWFFTTRSFWRVGEELVSEMMFRILKFAPPVSESSSTDVPADLDAS 184 Query 184 AMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGTV 243 M+RP++S DT FFWDGV AHELRIQ ADGS++HPPVPA+W+DKS +YVV+SGRGTV Sbjct 185 RMLRPTASLDTQFFWDGVAAHELRIQLRADGSVQHPPVPAIWKDKSEQTDYVVASGRGTV 244 Query 244 FSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFPD-- 301 FSFVVHHAPKVPGR++PFV+ALVEL EGVRMLGELRG DP+ V+IGM V A Y+DFP Sbjct 245 FSFVVHHAPKVPGRSLPFVVALVELPEGVRMLGELRGIDPSSVSIGMEVEAVYLDFPGDD 304 Query 302 ------WSLYAWEP 309 W+LYAW+P Sbjct 305 ETGGTPWTLYAWQP 318 >gi|343925845|ref|ZP_08765360.1| hypothetical protein GOALK_050_01400 [Gordonia alkanivorans NBRC 16433] gi|343764196|dbj|GAA12286.1| hypothetical protein GOALK_050_01400 [Gordonia alkanivorans NBRC 16433] Length=350 Score = 419 bits (1076), Expect = 4e-115, Method: Compositional matrix adjust. Identities = 213/327 (66%), Positives = 246/327 (76%), Gaps = 24/327 (7%) Query 7 IQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPP 66 I+ A I G S P RDP+NQPMINNWVEA+GD NPIYVDDAAARAAGHPG+VAPP Sbjct 17 IRAAAQTIMDDGASAPVRGRDPINQPMINNWVEAMGDENPIYVDDAAARAAGHPGVVAPP 76 Query 67 AMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAE 126 AM QVWTM GL GVR DDPLG +LFDDAG+ VVATNC+ YHRY+ PGEQVS+SAE Sbjct 77 AMAQVWTMRGLNGVRTADDPLGRATQLFDDAGFTSVVATNCDTVYHRYIRPGEQVSLSAE 136 Query 127 LGDVVGPKQTALGEGWFINQHIVWQVGDED-----VAEMNWRILKFKPAGSP------SS 175 L ++VGPK TALGEGWF VW V DE+ VAEM +RILKF+PA SS Sbjct 137 LIEIVGPKNTALGEGWFFTTRNVWSVPDENGVDEVVAEMRFRILKFRPAAKDAAPEPVSS 196 Query 176 VPDDLDPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQ----DKSVP 231 +PDDLDP +++PS SRDTAFFW+GV AHELRIQR +G+LRHPPVPA W+ D SVP Sbjct 197 IPDDLDPARLLKPSVSRDTAFFWEGVAAHELRIQRDGEGALRHPPVPATWKPREADGSVP 256 Query 232 -INYVVSSGRGTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGM 290 +YVV+SG GTV+S+VVH APKVPGR +PFV+ALVEL+EGVRMLGELRG +P V IGM Sbjct 257 ETDYVVASGTGTVYSYVVHRAPKVPGRQLPFVVALVELDEGVRMLGELRGVEPEDVEIGM 316 Query 291 PVRATYIDF--------PDWSLYAWEP 309 PVR T++DF P W+LYAWEP Sbjct 317 PVRVTFLDFPARDDAGTPAWTLYAWEP 343 >gi|326384606|ref|ZP_08206285.1| hypothetical protein SCNU_16778 [Gordonia neofelifaecis NRRL B-59395] gi|326196740|gb|EGD53935.1| hypothetical protein SCNU_16778 [Gordonia neofelifaecis NRRL B-59395] Length=342 Score = 417 bits (1073), Expect = 8e-115, Method: Compositional matrix adjust. Identities = 206/326 (64%), Positives = 240/326 (74%), Gaps = 21/326 (6%) Query 7 IQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPP 66 I+ A +I A G S PR RDP+NQPMINNW+EA+GD NPIYVDD AARAAGHPG+VAPP Sbjct 14 IRAAADEIAARGASAPRAGRDPINQPMINNWLEAMGDDNPIYVDDDAARAAGHPGVVAPP 73 Query 67 AMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAE 126 AM QVWTM GL GVR DDPLG +LFD AGY VVATNC+ YHRY PGE+V+IS+E Sbjct 74 AMAQVWTMRGLHGVRTDDDPLGLATELFDQAGYTSVVATNCDTVYHRYTRPGEEVTISSE 133 Query 127 LGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDD------- 179 L VVGPKQTALGEGWF W VGDE VAEM++RILKF+PA + DD Sbjct 134 LTQVVGPKQTALGEGWFFTTRNTWNVGDETVAEMDFRILKFRPAAKDARGADDAPAEQFE 193 Query 180 -LDPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKS-----VPIN 233 LDP ++RPSSSRDTAFFWDGV AHELRIQ++ DGSLRHPP+PA W ++ + Sbjct 194 GLDPTRLIRPSSSRDTAFFWDGVAAHELRIQQVQDGSLRHPPIPATWTERGDDGEFAGTD 253 Query 234 YVVSSGRGTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVR 293 YVV++G GTV+S+VVHHAP+VPGR +PFV+ALVEL+EGVRMLG+LRG DP V IGMPV Sbjct 254 YVVAAGSGTVYSYVVHHAPRVPGRELPFVVALVELDEGVRMLGQLRGVDPESVTIGMPVE 313 Query 294 ATYIDFPD--------WSLYAWEPDE 311 ++DFP WSLYAW E Sbjct 314 VEFLDFPGDDDTGGAPWSLYAWRAKE 339 >gi|226304199|ref|YP_002764157.1| hypothetical protein RER_07100 [Rhodococcus erythropolis PR4] gi|226183314|dbj|BAH31418.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=335 Score = 417 bits (1071), Expect = 1e-114, Method: Compositional matrix adjust. Identities = 206/314 (66%), Positives = 243/314 (78%), Gaps = 11/314 (3%) Query 7 IQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPP 66 I A +++ GPS PR RDPVN PMI NWVEAIGD NPIYVD++AARAAGH GIVAPP Sbjct 5 ILTAAERVREDGPSAPRAGRDPVNLPMIRNWVEAIGDENPIYVDESAARAAGHDGIVAPP 64 Query 67 AMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAE 126 AM QVWTM GLG +R DDPLG + + D+AG+ VVATNC+Q YHRYL PGE+V+IS+ Sbjct 65 AMAQVWTMRGLGAIREADDPLGRMTDILDEAGFTSVVATNCDQIYHRYLKPGEEVTISSV 124 Query 127 LGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGS--PSS-VPDDLDPD 183 L DVVGPK+T LGEGWF W+VG+E V+EM +RILKF P S PS+ VP DLD Sbjct 125 LEDVVGPKKTGLGEGWFFTTRSFWRVGEELVSEMMFRILKFAPPVSERPSTDVPADLDAS 184 Query 184 AMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGTV 243 M+RP++S DT FFWDGV AHELRIQ ADGS++HPPVPA+W+DKS +YVV+SGRGTV Sbjct 185 RMLRPTASLDTQFFWDGVAAHELRIQLRADGSVQHPPVPAIWKDKSEQTDYVVASGRGTV 244 Query 244 FSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFPD-- 301 FSFVVHHAPKVPGR++PFV+ALVEL EGVRMLGELRG DP+ +IGM V A Y+DFP Sbjct 245 FSFVVHHAPKVPGRSLPFVVALVELPEGVRMLGELRGVDPSSASIGMEVEAIYLDFPGDD 304 Query 302 ------WSLYAWEP 309 W+LYAW+P Sbjct 305 ETGGTPWTLYAWQP 318 >gi|262200883|ref|YP_003272091.1| hypothetical protein Gbro_0885 [Gordonia bronchialis DSM 43247] gi|262084230|gb|ACY20198.1| protein of unknown function DUF35 [Gordonia bronchialis DSM 43247] Length=333 Score = 416 bits (1070), Expect = 2e-114, Method: Compositional matrix adjust. Identities = 212/327 (65%), Positives = 244/327 (75%), Gaps = 20/327 (6%) Query 1 VTGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP 60 T I+ A I GPS P RDP+NQPMINNWVEA+GD NPIY D++AARAAGHP Sbjct 2 TTSADTIRAAAQTIIDDGPSAPIAGRDPINQPMINNWVEAMGDENPIYTDESAARAAGHP 61 Query 61 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ 120 GIVAPPAM QVWTM GL G R DDPLG +LFDDAGY VVATNC+ YHRY GE+ Sbjct 62 GIVAPPAMAQVWTMRGLHGARTDDDPLGRASQLFDDAGYTSVVATNCDTVYHRYTQLGEE 121 Query 121 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKF-----KPAGSPSS 175 VS+SAEL DVVGPK TALGEGWF VW V DE VAEM +RILKF KPAG + Sbjct 122 VSLSAELLDVVGPKNTALGEGWFFTTRNVWSVDDEVVAEMRFRILKFRPGQQKPAG--PT 179 Query 176 VPDDLDPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVW----QDKSVP 231 VP+DLDP M++PS+SRDTAFFW+GV AHELRIQ+ DG+LRHPP+PA W +D SVP Sbjct 180 VPEDLDPSKMLKPSASRDTAFFWEGVAAHELRIQQTGDGTLRHPPIPATWKPRGEDGSVP 239 Query 232 -INYVVSSGRGTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGM 290 +YVV++G GT++SFVVH APKVPGR +PFV+ALVEL+EGVRMLGELRG DPA V IGM Sbjct 240 ETDYVVAAGTGTIYSFVVHRAPKVPGRALPFVVALVELDEGVRMLGELRGVDPADVRIGM 299 Query 291 PVRATYIDF--------PDWSLYAWEP 309 PV T++DF P W+LYAW+P Sbjct 300 PVTVTFLDFPADDAAGQPAWTLYAWQP 326 >gi|111021458|ref|YP_704430.1| hypothetical protein RHA1_ro04486 [Rhodococcus jostii RHA1] gi|110820988|gb|ABG96272.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=336 Score = 413 bits (1062), Expect = 1e-113, Method: Compositional matrix adjust. Identities = 205/324 (64%), Positives = 243/324 (75%), Gaps = 22/324 (6%) Query 7 IQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPP 66 I A ++++AGPS PR RDP+N PMI NWVEAIGDRNPIYVD+AAARAAGH GIVAPP Sbjct 6 ILAAADEVRSAGPSAPRPGRDPINLPMIRNWVEAIGDRNPIYVDEAAARAAGHDGIVAPP 65 Query 67 AMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAE 126 AM QVWTM GL VR DDPLG + + D+AG+ VVATNC+Q YHRYL GE+V+I+ Sbjct 66 AMAQVWTMQGLNAVRQPDDPLGRMTTILDEAGFTSVVATNCDQIYHRYLRVGEEVTITTT 125 Query 127 LGDVVGPKQTALGEGWFINQHIVWQVG-----DEDVAEMNWRILKFKP---------AGS 172 L D+VGPK+T LGEGWF +W+V DE VAEM +RILKF P A Sbjct 126 LEDLVGPKKTGLGEGWFFTTRSLWRVAGDDGTDEVVAEMLFRILKFAPKPAEPVSPSANG 185 Query 173 PSSVPDDLDPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPI 232 + DDLDP +MRPS+S+DT FFWDGV AHELRIQ+ DGSL+HPPVPA+W+DK+ Sbjct 186 QGASFDDLDPTKLMRPSASQDTQFFWDGVAAHELRIQQREDGSLQHPPVPALWKDKTETT 245 Query 233 NYVVSSGRGTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPV 292 +YVV+SGRGTVFS+VVHHAPKVPGR++PFV+ALVELEEGVRMLGELRG DPA V +GMPV Sbjct 246 DYVVASGRGTVFSYVVHHAPKVPGRSLPFVVALVELEEGVRMLGELRGVDPAEVTVGMPV 305 Query 293 RATYIDFPD--------WSLYAWE 308 A Y+DFP W+LYAW+ Sbjct 306 EAIYLDFPGDDETGGTPWTLYAWQ 329 >gi|226363824|ref|YP_002781606.1| hypothetical protein ROP_44140 [Rhodococcus opacus B4] gi|226242313|dbj|BAH52661.1| hypothetical protein [Rhodococcus opacus B4] Length=332 Score = 411 bits (1057), Expect = 5e-113, Method: Compositional matrix adjust. Identities = 206/319 (65%), Positives = 242/319 (76%), Gaps = 17/319 (5%) Query 7 IQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPP 66 I A ++++AGPS PR RDP+N PMI NWVEAIGDRNPIYVD+AAARAAGH GIVAPP Sbjct 6 ILAAAEEVRSAGPSAPRPGRDPINLPMIRNWVEAIGDRNPIYVDEAAARAAGHDGIVAPP 65 Query 67 AMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAE 126 AM QVWTM GL VR DDPLG + + D+AG+ VVATNC+Q YHRYLL GE+V+I+ Sbjct 66 AMAQVWTMQGLNAVRQTDDPLGRMTTILDEAGFTSVVATNCDQIYHRYLLVGEEVTITTT 125 Query 127 LGDVVGPKQTALGEGWFINQHIVWQ-VGDEDVAEMNWRILKFKPAG---SPSSVPD---- 178 L DVVGPK+T LGEG+F N VW+ E VAEM +RILKF P PS Sbjct 126 LEDVVGPKKTGLGEGFFFNTRSVWRDAAGEPVAEMLFRILKFVPKTDRPGPSGNGQGASY 185 Query 179 -DLDPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVS 237 DLDP MMRPS+S+DT FFWDG+ AHELRIQ+ DGSL+HPPVPA+W+DK+ +YVV+ Sbjct 186 VDLDPTKMMRPSASQDTQFFWDGIAAHELRIQQREDGSLQHPPVPALWKDKAEATDYVVA 245 Query 238 SGRGTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYI 297 SGRGTVFS+VVHHAPKVPGR++PFV+ALVELEEGVRMLGELRG +PA V IGMPV A Y+ Sbjct 246 SGRGTVFSYVVHHAPKVPGRSLPFVVALVELEEGVRMLGELRGVEPAEVTIGMPVEAIYL 305 Query 298 DFPD--------WSLYAWE 308 DFP W+LYAW+ Sbjct 306 DFPGDEETGGAPWTLYAWQ 324 >gi|54022415|ref|YP_116657.1| hypothetical protein nfa4510 [Nocardia farcinica IFM 10152] gi|54013923|dbj|BAD55293.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=310 Score = 390 bits (1003), Expect = 1e-106, Method: Compositional matrix adjust. Identities = 193/295 (66%), Positives = 220/295 (75%), Gaps = 5/295 (1%) Query 7 IQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPP 66 I A QI AAG PRLARDPVNQPMINNWVEAIGD NPIYVD+AAARAAGHPGIVAPP Sbjct 10 IVAAAEQIIAAGECAPRLARDPVNQPMINNWVEAIGDTNPIYVDEAAARAAGHPGIVAPP 69 Query 67 AMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAE 126 AM QVWTM GLGGVRP DDP+ L D AGY VV TNCEQ YHRYL+PGEQV++++ Sbjct 70 AMAQVWTMFGLGGVRPPDDPMAQTNDLLDAAGYTSVVGTNCEQIYHRYLVPGEQVTVTSR 129 Query 127 LGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDLDPDAMM 186 L + GPK+T LGEGWF+ +W VGDE V EM +RILKF P + + + Sbjct 130 LDSISGPKRTGLGEGWFVTFRTLWYVGDELVTEMLFRILKFAPRPAAEQPAGE-----RV 184 Query 187 RPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGTVFSF 246 +P S DT FFW G K ELRIQRL DG+LRHPP+PAVW+DKS +YVV+SGRGTVFS+ Sbjct 185 KPLVSHDTEFFWAGTKLGELRIQRLPDGTLRHPPIPAVWKDKSEQTDYVVASGRGTVFSY 244 Query 247 VVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFPD 301 VVHHAPKVPGR +PFV+ALVELEEGVRMLGELRG DP V +G+PV + D Sbjct 245 VVHHAPKVPGRQLPFVVALVELEEGVRMLGELRGIDPGEVRVGLPVEVAFEQLDD 299 >gi|319948637|ref|ZP_08022761.1| hypothetical protein ES5_04623 [Dietzia cinnamea P4] gi|319437718|gb|EFV92714.1| hypothetical protein ES5_04623 [Dietzia cinnamea P4] Length=367 Score = 382 bits (981), Expect = 4e-104, Method: Compositional matrix adjust. Identities = 196/333 (59%), Positives = 225/333 (68%), Gaps = 27/333 (8%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 S I A ++KA+G S R RDP+N PMI NW EAIGD NPIY + AA AAGH G+V Sbjct 16 TSRILAAADEVKASGGSARRAGRDPINLPMIRNWTEAIGDTNPIYESEEAAVAAGHGGLV 75 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAM QVWTM GLG R DDPLG + + D G+ VVATNC+ TYHRY PGE+V+I Sbjct 76 APPAMAQVWTMRGLGKAREADDPLGRMTDILDAEGFTSVVATNCDSTYHRYTRPGEEVTI 135 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKP-------------- 169 + L DVVGPK T LGEGWF W+VGDE VAEM++RILKF+P Sbjct 136 QSVLVDVVGPKTTGLGEGWFFTTRNYWRVGDEVVAEMDFRILKFRPPAKTAEPAASEEQI 195 Query 170 AGSPSSVPDDLDPDAMMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKS 229 S S DDL ++RPS S DT FFWDGV AHELRIQ+ DGSL+HPPVPA+W+DKS Sbjct 196 VASSGSATDDLVVGKVLRPSVSHDTQFFWDGVAAHELRIQKREDGSLQHPPVPALWKDKS 255 Query 230 VPINYVVSSGRGTVFSFVVHHAPKVPGRT-VPFVIALVELEEGVRMLGELRGADPARVAI 288 +YVVSSGRGTV+SFV HHAP+VPGRT PFVIALVELEEGVRMLGELR DPA V I Sbjct 256 EQTDYVVSSGRGTVYSFVTHHAPRVPGRTKFPFVIALVELEEGVRMLGELRDVDPAEVRI 315 Query 289 GMPVRATYIDFPD------------WSLYAWEP 309 GM V ++D P W+LYAW P Sbjct 316 GMEVEVEFLDMPGDESEDAAFGTDPWTLYAWRP 348 >gi|296141527|ref|YP_003648770.1| hypothetical protein Tpau_3856 [Tsukamurella paurometabola DSM 20162] gi|296029661|gb|ADG80431.1| protein of unknown function DUF35 [Tsukamurella paurometabola DSM 20162] Length=322 Score = 321 bits (823), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 177/321 (56%), Positives = 214/321 (67%), Gaps = 14/321 (4%) Query 1 VTGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP 60 ++ + A +I+A G S PR RDPVNQPMINNW EAIGD NP+Y D A + Sbjct 1 MSTTEQVLAAAERIRALGESAPRPGRDPVNQPMINNWTEAIGDTNPLYSDPEFAMRSRFG 60 Query 61 GIVAPPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQ 120 G VAPPAM QVW+M GL G R DDPLG + DDAGY VVATN QTYHR+L GE+ Sbjct 61 GSVAPPAMAQVWSMNGLHGTRADDDPLGLMTAALDDAGYTSVVATNSNQTYHRHLRLGEE 120 Query 121 VSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGS-----PSS 175 V+ S+ L DVVGPKQTALGEGWF +W+VGDE VAEM +R+LKF+P + P+S Sbjct 121 VTASSRLEDVVGPKQTALGEGWFFTTRTLWRVGDEVVAEMVFRLLKFRPPSAEPPEIPAS 180 Query 176 VPDDLDPDA------MMRPSSSRDTAFFWDGVKAHELRIQRLADGSLRHPPVPA-VWQDK 228 P DA ++RP SRDTAF+W+G K ELRIQR +LRHPP P D Sbjct 181 GPSGRIVDASGYAGGVLRPVISRDTAFYWEGAKLGELRIQRWGT-TLRHPPGPMDPGGDL 239 Query 229 SVPINYVVSSGRGTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAI 288 + +Y VS G GTVFSFVVHH PKVPG+ +PFV+ALVEL+EGVR+LGEL DPA V I Sbjct 240 AATPDYAVSPGTGTVFSFVVHHHPKVPGKRLPFVVALVELDEGVRVLGELIDVDPAAVRI 299 Query 289 GMPVRATYIDF-PDWSLYAWE 308 G+PV+A ++ D +L AWE Sbjct 300 GLPVKAVFLKVDDDLTLPAWE 320 >gi|300784417|ref|YP_003764708.1| hypothetical protein AMED_2511 [Amycolatopsis mediterranei U32] gi|299793931|gb|ADJ44306.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340525838|gb|AEK41043.1| hypothetical protein RAM_12765 [Amycolatopsis mediterranei S699] Length=302 Score = 319 bits (817), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 169/294 (58%), Positives = 206/294 (71%), Gaps = 11/294 (3%) Query 18 GPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGL 77 G S PRLARDPVNQ M+NNWVEAIGDRNP+Y D A A+ H G+VAPPAM QVWTM GL Sbjct 14 GESAPRLARDPVNQAMVNNWVEAIGDRNPVYTDPEYAAASVHKGLVAPPAMAQVWTMNGL 73 Query 78 GGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTA 137 G R DDPLG ++ + D+AG+ VVATN EQTYHRYL PGE V+ + L VVGPK+TA Sbjct 74 HGTRADDDPLGAMMAVLDEAGFTSVVATNSEQTYHRYLRPGEHVAAATRLETVVGPKRTA 133 Query 138 LGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDLDPDAMMRPSSSRDTAFF 197 LGEGWF+ W VG E VAEM +R+LKF+P ++RP SRDT FF Sbjct 134 LGEGWFVTTRTTWSVGSEAVAEMVFRVLKFRPPAPKPPP------APVLRPVISRDTEFF 187 Query 198 WDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPI--NYVVSSGRGTVFSFVVHHAPKVP 255 WDG++ ELRIQR + +LRHPP P + D S+ +YVV+SGRGTV+SFVVHH P VP Sbjct 188 WDGLREGELRIQRWGE-TLRHPPGP-MPPDGSLDTKPDYVVASGRGTVYSFVVHHHPPVP 245 Query 256 GRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF-PDWSLYAWE 308 G+ +PFV+ALVELEEGVR++ EL A P V IG+PV A ++ D +L AW+ Sbjct 246 GKELPFVVALVELEEGVRVMAELLDAAPEEVHIGLPVVAAFVRVDDDLTLPAWK 299 >gi|302525652|ref|ZP_07277994.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302434547|gb|EFL06363.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=302 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 169/294 (58%), Positives = 203/294 (70%), Gaps = 11/294 (3%) Query 18 GPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGL 77 G S PR ARDPVNQ M+NNWVEAIGD NP+Y D A A+ H G+VAPPAM QVWTM GL Sbjct 14 GESAPRYARDPVNQAMVNNWVEAIGDANPVYTDAEFAEASVHKGLVAPPAMAQVWTMPGL 73 Query 78 GGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTA 137 GVR DDPLG I+K+ DDAGY +VATN EQTYHRYL PGE VS + L DV GPK+T Sbjct 74 HGVRGDDDPLGLILKVLDDAGYTSIVATNSEQTYHRYLRPGEHVSTTNVLEDVTGPKRTG 133 Query 138 LGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDLDPDAMMRPSSSRDTAFF 197 LGEGWF+ W V E VA+M +R+LKF+P ++RP S DT FF Sbjct 134 LGEGWFVTTRTNWYVDGELVADMVFRVLKFRPREPEPPP------SPVLRPVISHDTKFF 187 Query 198 WDGVKAHELRIQRLADGSLRHP--PVPAVWQDKSVPINYVVSSGRGTVFSFVVHHAPKVP 255 WDG++ ELRIQR D LRHP P+P +VP +YVV+SGRGTV+SFVVHH P VP Sbjct 188 WDGLREGELRIQRWGD-VLRHPPGPMPPDGSLDTVP-DYVVASGRGTVYSFVVHHHPAVP 245 Query 256 GRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFPD-WSLYAWE 308 G+ +PFV+ALVELEEGVR++ EL A+P V IG+PV A ++ D +L AW+ Sbjct 246 GKRLPFVVALVELEEGVRLMAELLDAEPDEVHIGLPVTAAFVRVDDELTLPAWK 299 >gi|333918579|ref|YP_004492160.1| hypothetical protein AS9A_0908 [Amycolicicoccus subflavus DQS3-9A1] gi|333480800|gb|AEF39360.1| hypothetical protein AS9A_0908 [Amycolicicoccus subflavus DQS3-9A1] Length=289 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 162/286 (57%), Positives = 194/286 (68%), Gaps = 3/286 (1%) Query 25 ARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGLGGVRPKD 84 ARDPVNQ MINNWVEAIGD NP+Y D A A+ H G+VAPPAM QVWTM GL G R D Sbjct 3 ARDPVNQAMINNWVEAIGDNNPVYTDPDFAAASIHGGVVAPPAMAQVWTMRGLHGKRNAD 62 Query 85 DPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTALGEGWFI 144 DPLG ++ D G+ VV TN EQTYHRYL PGE+V+ S +L D+ GPK+TALG GWF+ Sbjct 63 DPLGAMLAALDKEGFTSVVGTNTEQTYHRYLRPGERVTASTKLRDINGPKETALGPGWFV 122 Query 145 NQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDLDPDAMMRPSSSRDTAFFWDGVKAH 204 W VG+E VAEM +R+LKF+P S + +++RP SRDTAFFW+G K Sbjct 123 TTVTTWSVGEEPVAEMVFRVLKFRPKSSARIIDAPEYAASVLRPVISRDTAFFWEGTKKG 182 Query 205 ELRIQRLADGSLRHPP-VPAVWQDKSVPINYVVSSGRGTVFSFVVHHAPKVPGRTVPFVI 263 ELRIQR D LRHPP A D +Y+V+ G GTV+SFVVHH PKVPG+ PFV+ Sbjct 183 ELRIQRWGD-ELRHPPGAVAPNGDLEATPDYIVARGTGTVYSFVVHHHPKVPGKKTPFVV 241 Query 264 ALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF-PDWSLYAWE 308 ALVEL+EGVR+LGEL P V IG VRA ++ D +L AWE Sbjct 242 ALVELDEGVRVLGELINVAPEDVKIGGSVRAVFLRIDDDVTLPAWE 287 >gi|159038394|ref|YP_001537647.1| hypothetical protein Sare_2821 [Salinispora arenicola CNS-205] gi|157917229|gb|ABV98656.1| protein of unknown function DUF35 [Salinispora arenicola CNS-205] Length=315 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 160/316 (51%), Positives = 199/316 (63%), Gaps = 28/316 (8%) Query 10 AVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMI 69 A +I+AAG PR ARDPVN PMI NW+EA+GD NP+Y VAPPAM Sbjct 8 AAERIRAAGAGPPRRARDPVNLPMIRNWLEAMGDDNPVYERTG----------VAPPAMT 57 Query 70 QVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGD 129 QVWTM GL DPL + + D AG+ VVATNCEQTYHRYL GEQV + + L D Sbjct 58 QVWTMRGLHPAAEPADPLSAMSAVLDRAGFTSVVATNCEQTYHRYLRHGEQVEVRSRLLD 117 Query 130 VVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPS--------------- 174 V GPK+TALGEGWF+ W VG+E VA M +RILKF+P+ P+ Sbjct 118 VSGPKRTALGEGWFVTTDSTWYVGEEAVASMTFRILKFRPSSPPTVSDAAAPPVPAVAPE 177 Query 175 SVPDDLDPDAMMRPSSSRDTAFFWDGVKAHELRIQRLAD-GSLRHPPVPAVWQDKSVPIN 233 + P + PD ++RP +RDTAFFW G A ELR+QR G+LRHPP PA + + + Sbjct 178 AGPAAVAPD-VLRPVVTRDTAFFWAGTAAGELRLQRCGGCGALRHPPGPACPRCGADRRD 236 Query 234 YVVSSGRGTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVR 293 +VV+ G G VFSFVVHH P VPGR +P V+ALVEL EGVRM+GE+ GADPA+V IG V+ Sbjct 237 HVVARGTGEVFSFVVHHHPPVPGRRLPIVVALVELTEGVRMVGEIPGADPAQVRIGAAVQ 296 Query 294 ATYIDF-PDWSLYAWE 308 ++ + +L AW Sbjct 297 VDFVRVDAELTLPAWR 312 >gi|145595148|ref|YP_001159445.1| hypothetical protein Strop_2623 [Salinispora tropica CNB-440] gi|145304485|gb|ABP55067.1| protein of unknown function DUF35 [Salinispora tropica CNB-440] Length=305 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 163/310 (53%), Positives = 197/310 (64%), Gaps = 21/310 (6%) Query 7 IQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPP 66 I A QI+AAG R ARDPVN PMI NW+EAIGD NP Y D VAPP Sbjct 5 IIAAAEQIRAAGAGPARSARDPVNLPMIRNWLEAIGDGNPRYEQDG----------VAPP 54 Query 67 AMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAE 126 AM QVWTM GL DPL + + D AG+ VVATNCEQTYHRYL GE+V + + Sbjct 55 AMTQVWTMRGLRPAAEPADPLSAMSAVLDQAGFTSVVATNCEQTYHRYLRDGERVEVRSR 114 Query 127 LGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVP-DDLDPDA- 184 L DV GPK+TALGEGWF+ W VG+E VA M +R+LKF+P GS +VP ++ P A Sbjct 115 LVDVSGPKRTALGEGWFVTTDSTWYVGEEAVASMTFRVLKFRPPGSAPTVPASEVAPAAA 174 Query 185 --MMRPSSSRDTAFFWDGVKAHELRIQRLAD-GSLRHPPVPAVWQDKSVPINYVVSSGRG 241 ++RP +RDTAFFW G A ELRIQR + G+LRHPP P Q +++V+SG G Sbjct 175 SDVLRPVVTRDTAFFWAGAAAGELRIQRCGECGALRHPPGPVCRQCGVDRQDHLVASGTG 234 Query 242 TVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYI---- 297 VFSFVVH P VPGR +P V+A+VEL EGVRM+GE+ GADPA+V IG VR ++ Sbjct 235 EVFSFVVHRHPPVPGRQLPIVVAVVELTEGVRMVGEVVGADPAQVRIGAAVRVDFVRVDA 294 Query 298 --DFPDWSLY 305 P W L Sbjct 295 ELTLPVWRLL 304 >gi|311744300|ref|ZP_07718104.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] gi|311312473|gb|EFQ82386.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] Length=431 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 158/310 (51%), Positives = 190/310 (62%), Gaps = 22/310 (7%) Query 4 VSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIV 63 V + V +IKA G S+PR DPVN PMI +W EAIGD NP R A P Sbjct 6 VETMLARVEEIKARGRSRPRQGPDPVNAPMIRHWAEAIGDTNP--------RWAPGPDTE 57 Query 64 APPAMIQVWTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSI 123 APPAM QVWTM GL R DPL + D+AG+ V+ TNC+QTY R L PGE VSI Sbjct 58 APPAMAQVWTMYGLNPERMPGDPLPDTMAALDEAGFTAVLGTNCDQTYARTLRPGEVVSI 117 Query 124 SAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKP-AGSPSSVPDDLDP 182 S L DVVGPK T +GEGWFI VW VG+E VA M +R+LKFKP G P+ +D Sbjct 118 STRLADVVGPKMTGVGEGWFITTESVWTVGEEQVATMRFRVLKFKPGTGRPT-----VDR 172 Query 183 DAMMRPSSSRDTAFFWDGVKAHELRIQRL-ADGSLRHPPVPAVWQDKSVPINYVVSSGRG 241 RP +RDTAFFW+G A ELRIQ A G+LRHPP P ++ +VV+SGRG Sbjct 173 SRTTRPMVNRDTAFFWEGTAAGELRIQTCTACGALRHPPGPVCPSCHAMDRGHVVASGRG 232 Query 242 TVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATY--IDF 299 V SF+VHHAP VPG+ +P +ALV+L+EGVRM+GE+ G VAIG V + ID Sbjct 233 HVHSFLVHHAPVVPGKALPLTLALVDLDEGVRMVGEVAG----EVAIGDAVEVWFDRID- 287 Query 300 PDWSLYAWEP 309 D +L W P Sbjct 288 DDLTLAKWRP 297 >gi|271969393|ref|YP_003343589.1| hypothetical protein Sros_8196 [Streptosporangium roseum DSM 43021] gi|270512568|gb|ACZ90846.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length=319 Score = 269 bits (687), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 148/314 (48%), Positives = 198/314 (64%), Gaps = 11/314 (3%) Query 1 VTGVSDIQEAVAQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHP 60 + +++ Q AV +++ A DPVN PMI +W A+GD NP+Y D AA + H Sbjct 13 LMALAERQIAVGEVRGVA------AADPVNLPMIRHWAAAMGDANPVYTDAEAAAGSVHG 66 Query 61 GIVAPPAMIQVWTMMGLG-GVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGE 119 +VAPPAMIQVWTM G+ R P+ +++ D GY GVVATNCEQTYHRYL GE Sbjct 67 EVVAPPAMIQVWTMPGMDRDGRQATTPVDDVLRALDGNGYTGVVATNCEQTYHRYLRLGE 126 Query 120 QVSISAELGDVVGPKQTALGEGWFINQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDD 179 ++ + + GPK+TALGEG+F+ +I W DE VA+M +R+LKF+P + P+ Sbjct 127 RLVPATRFAGLSGPKKTALGEGYFVTWNITWYSQDEPVADMLFRVLKFRPRERKTK-PEA 185 Query 180 LDPDAMMRPSSSRDTAFFWDGVKAHELRIQRLAD-GSLRHPPVPAVWQDKSVPINYVVSS 238 +P ++P+ +RDTAFFW+GV ELRIQ+ AD G LRHPP P +SV +VV+S Sbjct 186 REPYP-LKPAINRDTAFFWEGVGRGELRIQKCADCGELRHPPGPVCPSCRSVERTHVVAS 244 Query 239 GRGTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYID 298 G G V+S+VVHH P VPGR+ PFV+A+VEL EGVR++G + P V IGM +R TY Sbjct 245 GAGEVYSYVVHHNPPVPGRSTPFVVAVVELPEGVRIVGNVVDCPPEEVGIGMQLRVTYRQ 304 Query 299 FPD-WSLYAWEPDE 311 D L W P E Sbjct 305 MDDELILPMWVPQE 318 >gi|148556220|ref|YP_001263802.1| hypothetical protein Swit_3318 [Sphingomonas wittichii RW1] gi|148501410|gb|ABQ69664.1| protein of unknown function DUF35 [Sphingomonas wittichii RW1] Length=312 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 131/285 (46%), Positives = 171/285 (60%), Gaps = 8/285 (2%) Query 20 SKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGLG- 78 S P ARDPVN PMI W EA+G+ NP+Y+D+ AARAAGHPGIVAPPAM+ VW M Sbjct 17 SPPATARDPVNLPMIRRWCEAMGETNPVYLDEVAARAAGHPGIVAPPAMLDVWAMAPYRP 76 Query 79 GVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTAL 138 G R ++ + ++ LFDDAGY GVVATN Q Y RYL GE V+ + + DV K+TAL Sbjct 77 GGRTAEEGMA-VLSLFDDAGYTGVVATNVRQDYGRYLTLGEVVTSTPIVADVSDEKRTAL 135 Query 139 GEGWFINQHIVWQVGDEDVAEMNWRILKFKP-AGSPSSVPDDLDPDAMM----RPSSSRD 193 G G F+ + V E V M +R+LKFKP P S P + + + RP+ + D Sbjct 136 GIGHFVTLAYDFTVAGEPVGRMTFRVLKFKPNLAQPQSRPAEPAAETKVWPHPRPAITHD 195 Query 194 TAFFWDGVKAHELRIQRLADGSLRHPPVPAVWQDKSVPINYVVSSGRGTVFSFVVHHAPK 253 AFFW+GV +L Q +G LRHPP P S+ V +SGRGT+ SFVV H P+ Sbjct 196 NAFFWEGVNRRKLLFQS-CEGRLRHPPGPMDPLTGSLDFEIVEASGRGTIHSFVVMHQPR 254 Query 254 VPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYID 298 +PG P + LVELEEGVR++ + A + IG V A +++ Sbjct 255 LPGFDYPLPVVLVELEEGVRIVANMIDAAAEAIEIGRAVVADFVE 299 >gi|269127688|ref|YP_003301058.1| hypothetical protein Tcur_3482 [Thermomonospora curvata DSM 43183] gi|268312646|gb|ACY99020.1| protein of unknown function DUF35 [Thermomonospora curvata DSM 43183] Length=319 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 118/297 (40%), Positives = 175/297 (59%), Gaps = 12/297 (4%) Query 21 KPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGLGGV 80 +PR +DPVN PMI +WVEA+GD NP+Y+D+ AARA G +VAP +M+Q WTM G Sbjct 20 EPRRGQDPVNVPMIRHWVEAMGDTNPVYLDEEAARATGRETVVAPASMMQAWTMRGYAAT 79 Query 81 ---RPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTA 137 P+ + + L + GY VVAT+ E +HR L+PG+ +S+ ++ + K+TA Sbjct 80 VNPEPEAGGMEELTALLAEGGYTSVVATDSEFEFHRELVPGDHISVQEQVESISPEKKTA 139 Query 138 LGEGWFINQHIVW--QVGDEDVAEMNWRILKFKPAGSPSSVPDDLDPDAMM-RPSSSRDT 194 LGEG FI + Q G E VA WR+L+F+P + + + P A+ RP+ +RD Sbjct 140 LGEGRFITTLRTYRDQRG-EVVATQRWRLLRFRPKKTEQT---EQKPKALRPRPAINRDN 195 Query 195 AFFWDGVKAHELRIQRLADG-SLRHPPVPAVWQDKSVPINYVVSSGRGTVFSFVVHHAPK 253 AF+++ K L IQR A +LRHPP P S + V ++G G V+S++V H P Sbjct 196 AFWFEAAKQRRLVIQRCAACKTLRHPPGPCCPHCGSFDWDTVEAAGTGQVYSYIVAHHPP 255 Query 254 VPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF-PDWSLYAWEP 309 P +P+V+ALVEL EG R++ L G P ++ IGMPV +++ P+ +L + P Sbjct 256 HPAFEMPYVVALVELTEGTRLVTNLVGIAPDKIEIGMPVVLDWLEADPELTLPVFRP 312 >gi|312141661|ref|YP_004008997.1| hypothetical protein REQ_43550 [Rhodococcus equi 103S] gi|311891000|emb|CBH50319.1| conserved hypothetical protein [Rhodococcus equi 103S] Length=332 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 123/303 (41%), Positives = 169/303 (56%), Gaps = 20/303 (6%) Query 27 DPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGLGGVRPKDDP 86 D VN PMI +WVE +GD +PIY+DD AARA G G VAP M QVWTM +DP Sbjct 24 DEVNTPMIRHWVETMGDTSPIYLDDDAARATGRDGAVAPALMAQVWTMRTFNDKMANNDP 83 Query 87 L---GPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTALGEGWF 143 +I DD G+ VVAT+ + + L PG++VS++ + + K+T LG G F Sbjct 84 SQVWTDLIATLDDEGFTSVVATDSDFEFFTELRPGDRVSLTEVIESISEEKKTGLGVGHF 143 Query 144 INQHIVWQVG---------DEDVAEMNWRILKFKPAGS--PSSVPDDLD----PDAMMRP 188 + ++ G DE VA WR L+FKP GS P+ P + P RP Sbjct 144 VTTLKTYRRGGAANGHSGDDEVVATQRWRTLRFKPKGSEKPAEKPAEKSGGPIPGLRPRP 203 Query 189 SSSRDTAFFWDGVKAHELRIQRLAD-GSLRHPPVPAVWQDKSVPINYVVSSGRGTVFSFV 247 + + D AF+++ K H L IQR + G LRHP P +S+ + V +SGRG V+SFV Sbjct 204 ALNADNAFWFEAAKEHRLVIQRCTNCGVLRHPTGPMCGACQSLNWDTVDASGRGIVYSFV 263 Query 248 VHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF-PDWSLYA 306 V+H P++PG P ++A +ELEEG R++ + G P V IGMPV +ID PD +L A Sbjct 264 VNHHPQIPGFEYPLIVATIELEEGTRLIANMTGIAPDDVEIGMPVEMDWIDADPDLTLPA 323 Query 307 WEP 309 + P Sbjct 324 FRP 326 >gi|111022789|ref|YP_705761.1| hypothetical protein RHA1_ro05826 [Rhodococcus jostii RHA1] gi|110822319|gb|ABG97603.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=312 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/289 (43%), Positives = 168/289 (59%), Gaps = 12/289 (4%) Query 27 DPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGLGGVRPKDDP 86 DPVN PMI +WVEA+GD +P+Y+DDAAARA G G VAP M+QVWTM DP Sbjct 24 DPVNTPMIRHWVEAMGDTSPVYLDDAAARATGRGGAVAPAQMLQVWTMRTFADKMSGADP 83 Query 87 ---LGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTALGEGWF 143 +I D+AG+ VVAT+ +Q + L PG++VS + + V KQT LG G F Sbjct 84 SPVCTELIATLDEAGFTSVVATDSDQEFFAELRPGDRVSTTEVVESVSAEKQTGLGAGHF 143 Query 144 INQHIVWQVGD-EDVAEMNWRILKFKPAGSPSSVPDDLDPDAMMRPSSSRDTAFFWDGVK 202 + ++ GD E V WR L+F+P P+ P RP+ + D AF++ + Sbjct 144 VTTLKTYRNGDGEIVGTQRWRTLRFRPTERPAPRP------LRPRPALNDDNAFWFAAAR 197 Query 203 AHELRIQRLAD-GSLRHPPVPAVWQDKSVPINYVVSSGRGTVFSFVVHHAPKVPGRTVPF 261 H L IQR A G LRHP P + +S + V +SGRGTV++FVV+H PK+ P Sbjct 198 EHRLVIQRCARCGVLRHPTGPMCGECRSTEWDTVDASGRGTVYTFVVNHHPKIDAFDYPL 257 Query 262 VIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF-PDWSLYAWEP 309 V+A++ELEEG R++ + G +P V IGMPV +ID P+ +L A+ P Sbjct 258 VVAVIELEEGTRLIANMTGVEPEHVHIGMPVELDWIDADPELTLPAFRP 306 >gi|325673082|ref|ZP_08152776.1| hypothetical protein HMPREF0724_10557 [Rhodococcus equi ATCC 33707] gi|325556335|gb|EGD26003.1| hypothetical protein HMPREF0724_10557 [Rhodococcus equi ATCC 33707] Length=332 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 121/303 (40%), Positives = 167/303 (56%), Gaps = 20/303 (6%) Query 27 DPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGLGGVRPKDDP 86 D VN PMI +WVE +GD +PIY+DD AARA G G VAP M QVWTM +DP Sbjct 24 DEVNTPMIRHWVETMGDTSPIYLDDDAARATGRDGAVAPALMAQVWTMRTFNDKMANNDP 83 Query 87 L---GPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTALGEGWF 143 +I DD G+ VVAT+ + + L PG++VS++ + + K+T LG G F Sbjct 84 SQVWTDLIATLDDEGFTSVVATDSDFEFFTELRPGDRVSLTEVIESISEEKKTGLGVGHF 143 Query 144 INQHIVWQVG---------DEDVAEMNWRILKFKPAGSPSSVPDDLD------PDAMMRP 188 + ++ G DE VA WR L+FKP GS + + P RP Sbjct 144 VTTLKTYRRGGAANGHSGDDEVVATQRWRTLRFKPKGSEKAAEKPAEKSGGPIPGLRPRP 203 Query 189 SSSRDTAFFWDGVKAHELRIQRLAD-GSLRHPPVPAVWQDKSVPINYVVSSGRGTVFSFV 247 + + D AF+++ K H L IQR + G LRHP P +S+ + V +SGRG V+SFV Sbjct 204 ALNADNAFWFEAAKEHRLVIQRCTNCGVLRHPTGPMCGACQSLNWDTVDASGRGIVYSFV 263 Query 248 VHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF-PDWSLYA 306 V+H P++PG P ++A +ELEEG R++ + G P V IGMPV +ID PD +L A Sbjct 264 VNHHPQIPGFEYPLIVATIELEEGTRLIANMTGIAPDDVEIGMPVELDWIDADPDLTLPA 323 Query 307 WEP 309 + P Sbjct 324 FRP 326 >gi|229488465|ref|ZP_04382331.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229323969|gb|EEN89724.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=315 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 115/290 (40%), Positives = 165/290 (57%), Gaps = 11/290 (3%) Query 27 DPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGLGGVRPKDDP 86 D VN PMI +W E +GD NP+Y+DD AARA G G+VAP M+QVW M +DP Sbjct 24 DEVNIPMIRHWAETMGDTNPVYLDDEAARATGRDGVVAPAQMLQVWIMRTFTDKMAGNDP 83 Query 87 L---GPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTALGEGWF 143 +I D AGY VVAT+ +Q + L PG++V+ + + + K+T LG G F Sbjct 84 SQVWTDLIATLDAAGYSSVVATDSDQEFFAELRPGDRVNYTEVIESISPEKKTGLGVGHF 143 Query 144 INQHIVWQVGDEDV-AEMNWRILKFKPAGSPS-SVPDDLDPDAMMRPSSSRDTAFFWDGV 201 + ++ GD+ V WR L+FKP S + P L P RP+ + D AF+++ Sbjct 144 VTTLKTYRNGDDQVVGTQRWRTLRFKPQESAAPEAPRALRP----RPALNADNAFWFEAA 199 Query 202 KAHELRIQRLADG-SLRHPPVPAVWQDKSVPINYVVSSGRGTVFSFVVHHAPKVPGRTVP 260 K H L IQR +LRHP P + +S+ + + +SGRGTV+SFVV+H PK+ P Sbjct 200 KEHRLVIQRCTSCKTLRHPTGPMCGECQSLEWDTIDASGRGTVYSFVVNHHPKIDAFDYP 259 Query 261 FVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF-PDWSLYAWEP 309 ++A++ELEEG R++ + G P V + MPV +ID PD +L A+ P Sbjct 260 LIVAVIELEEGTRLIANMVGIAPEDVVVDMPVELDWIDADPDLTLPAFRP 309 >gi|226308563|ref|YP_002768523.1| hypothetical protein RER_50760 [Rhodococcus erythropolis PR4] gi|226187680|dbj|BAH35784.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=315 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 114/290 (40%), Positives = 166/290 (58%), Gaps = 11/290 (3%) Query 27 DPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGLGGVRPKDDP 86 D VN PMI +W E +GD NP+Y+DD AARA G G+VAP M+QVW M +DP Sbjct 24 DEVNIPMIRHWAETMGDTNPVYLDDDAARATGRDGVVAPAQMLQVWIMRTFTDKMAGNDP 83 Query 87 L---GPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTALGEGWF 143 +I D AGY VVAT+ +Q + L PG++V+ + + + K+T LG G F Sbjct 84 SQVWTDLIATLDAAGYSSVVATDSDQEFFAELRPGDRVNYTEVIESISPEKKTGLGVGHF 143 Query 144 INQHIVWQVGDEDV-AEMNWRILKFKPAGSPS-SVPDDLDPDAMMRPSSSRDTAFFWDGV 201 + ++ GD++V WR L+FKP + + P L P RP+ + D AF+++ Sbjct 144 VTTLKTYRNGDDEVVGTQRWRTLRFKPQEAKAPEAPRALRP----RPALNADNAFWFEAA 199 Query 202 KAHELRIQRLADG-SLRHPPVPAVWQDKSVPINYVVSSGRGTVFSFVVHHAPKVPGRTVP 260 K H L IQR +LRHP P + +S+ + + +SGRGTV+SFVV+H PK+ P Sbjct 200 KEHRLVIQRCTSCKTLRHPTGPMCGECQSLEWDTIDASGRGTVYSFVVNHHPKIDAFDYP 259 Query 261 FVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF-PDWSLYAWEP 309 ++A++ELEEG R++ + G P V + MPV +ID PD +L A+ P Sbjct 260 LIVAVIELEEGTRLIANMVGIAPEDVVVDMPVELDWIDADPDLTLPAFRP 309 >gi|288918163|ref|ZP_06412519.1| protein of unknown function DUF35 [Frankia sp. EUN1f] gi|288350439|gb|EFC84660.1| protein of unknown function DUF35 [Frankia sp. EUN1f] Length=571 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/318 (39%), Positives = 167/318 (53%), Gaps = 35/318 (11%) Query 12 AQIKAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQV 71 A++ A P R+AR PVN+ MI +W +AIGD NP Y D A A H G+VAPPAM+ V Sbjct 48 AEVGARAPR--RVARHPVNEAMIAHWCDAIGDANPAYTDAAYAATTVHGGLVAPPAMLDV 105 Query 72 WTMMGLGGVRPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVV 131 W GL R DDP +I + AG++ VVA N E HRYL PG+ + L DV Sbjct 106 WDRHGLLERREADDPRARVIATLEQAGFVSVVAVNAELEIHRYLRPGDLLGNVQTLTDVS 165 Query 132 GPKQTALGEGWFI-NQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDLDPDAMMRPSS 190 K+TALG G F+ ++H E V ++ +RILKF+P GS P +P++ PS Sbjct 166 AEKRTALGVGHFVTSRHRFTDQAGEHVGDLQFRILKFRP-GSGQRPPAAANPNS-ANPSG 223 Query 191 -----------------------------SRDTAFFWDGVKAHELRIQRL-ADGSLRHPP 220 +RD FFWDG +A ELRIQR G+L PP Sbjct 224 GSSVTTRRGPSGPSGPPDPDPARRPRPAINRDNQFFWDGTRARELRIQRCDGCGALFSPP 283 Query 221 VPAVWQDKSVPINYVVSSGRGTVFSFVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRG 280 W + ++V+SGRG ++S V H P PG P + LVEL EG R++ +L G Sbjct 284 TARCWHCGGFELGWIVASGRGRLYSHAVVHHPPAPGFRYPLPVGLVELAEGTRVVADLVG 343 Query 281 ADPARVAIGMPVRATYID 298 PA + +GMPV T+++ Sbjct 344 CPPAGLRVGMPVELTWVE 361 >gi|254384132|ref|ZP_04999477.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194343022|gb|EDX23988.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length=313 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 113/277 (41%), Positives = 151/277 (55%), Gaps = 13/277 (4%) Query 25 ARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGLGGVRPKD 84 A+DPVN+PMI +W EA+GD +P Y P +APP M+Q WTM GL G + Sbjct 30 AKDPVNEPMIRHWCEAMGDTSPSYTG---------PDAIAPPTMLQAWTMGGLSGHSDRS 80 Query 85 DPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTALGEGWFI 144 ++ L D AG VVAT+CEQ Y R L PG+ V+ A + V K T LG G F+ Sbjct 81 CAYDQLLALLDGAGCTSVVATDCEQEYLRPLRPGDAVTFDAVIESVSARKTTKLGTGHFV 140 Query 145 NQHIVWQVGDEDVAEMNWRILKFKPAGSPSSVPDDLDPDAMM---RPSSSRDTAFFWDGV 201 + + E +RILK++PA + + L P RP +RD FW+GV Sbjct 141 TTRMDVRANGEPAGTHRFRILKYRPAATTAQPARPLPPKQAARRPRPVINRDNHGFWEGV 200 Query 202 KAHELRIQRLAD-GSLRHPPVPAVWQDKSVPINYVVSSGRGTVFSFVVHHAPKVPGRTVP 260 +AH L IQR + +LR P +P S + V +SG GTVFS+VV H P P P Sbjct 201 RAHRLLIQRCSSCATLRFPWLPGCNACASPEWDTVEASGAGTVFSYVVMHHPPFPAFDPP 260 Query 261 FVIALVELEEGVRMLGELRGADPARVAIGMPVRATYI 297 + +ALVEL EGVRM+G + G +V IGMPVR ++ Sbjct 261 YAVALVELAEGVRMIGNITGVPYDKVRIGMPVRLEFL 297 >gi|157961959|ref|YP_001501993.1| hypothetical protein Spea_2138 [Shewanella pealeana ATCC 700345] gi|157846959|gb|ABV87458.1| protein of unknown function DUF35 [Shewanella pealeana ATCC 700345] Length=321 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 115/303 (38%), Positives = 164/303 (55%), Gaps = 19/303 (6%) Query 25 ARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTMMGLGGV---- 80 A D +N M+ W E +G NP+Y D+ A GIVAPP+M+Q W + G V Sbjct 17 AWDAINPAMVRQWCEVMGIDNPLYTDEQYALTTEFEGIVAPPSMLQTWCLAGFNDVCAPG 76 Query 81 RPKDDPLGPIIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVVGPKQTALGE 140 +++P G ++KL + GY VVA N E + RYL GE++ + +L + K T LG Sbjct 77 SSEENPYG-VLKLLEAQGYPAVVAVNSELDFKRYLKMGEKLCYTTKLESISEEKTTGLGV 135 Query 141 GWFINQHIVW----QVGDED-VAEMNWRILKFKPAGSPSSVPD---DLDPDAMM----RP 188 G+F+ + + G+E+ V + +R+ KFKPA S P+ D P A + +P Sbjct 136 GYFVTFIMTYFSTHNDGEEELVGTLLFRVFKFKPAARAESTPEVKQDPKPAAKVYKRPKP 195 Query 189 SSSRDTAFFWDGVKAHELRIQRL-ADGSLRHPPVPAVWQDKSVPINYVVSSGRGTVFSFV 247 S D FFWDG HELRIQ L+HPP P +S +++ V SG+G++FSFV Sbjct 196 GISDDNRFFWDGCNQHELRIQHCTCCDKLQHPPAPICMHCQSFELDHKVVSGKGSIFSFV 255 Query 248 VHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDFP-DWSLYA 306 V H P+VP P IALVELEEGVR+ L G +P V IG V+ + + D +L Sbjct 256 VMHYPEVPPFEHPNPIALVELEEGVRLTAGLIGIEPEDVVIGQKVKVEFTTYDGDLTLPM 315 Query 307 WEP 309 ++P Sbjct 316 FKP 318 >gi|329895411|ref|ZP_08270992.1| hypothetical protein IMCC3088_1452 [gamma proteobacterium IMCC3088] gi|328922294|gb|EGG29640.1| hypothetical protein IMCC3088_1452 [gamma proteobacterium IMCC3088] Length=318 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 113/303 (38%), Positives = 166/303 (55%), Gaps = 13/303 (4%) Query 15 KAAGPSKPRLARDPVNQPMINNWVEAIGDRNPIYVDDAAARAAGHPGIVAPPAMIQVWTM 74 K GP K D V +I +W EA+GD NP+Y A AAG+ ++APP M+Q W M Sbjct 13 KTVGPFK---GWDTVQPALIRHWCEAMGDNNPVYRSREVALAAGYTDVIAPPTMLQAWGM 69 Query 75 MGLGGVRPK-DDPLGP--IIKLFDDAGYIGVVATNCEQTYHRYLLPGEQVSISAELGDVV 131 G P+ D P ++ + GY VVA NCEQ Y L G+ V + + + Sbjct 70 KGYNERFPEGSDNANPFEVLVFLESQGYPAVVAVNCEQEYGEPLAIGDSVHFYSRIEAIS 129 Query 132 GPKQTALGEGWFINQHIVWQVG-DEDVAEMNWRILKFKPAGSPSSVPDD--LDPDAM--M 186 K TALGEG+F+ + ++ DE V M +R+ KFK S + D P A+ M Sbjct 130 ELKTTALGEGYFVTEVSTYKNQRDEVVGVMTFRVFKFKAHESQQARASDSPQKPKAIKRM 189 Query 187 RPSSSRDTAFFWDGVKAHELRIQRLADG-SLRHPPVPAVWQDKSVPINYVVSSGRGTVFS 245 RP + DTAFFW+GV ELRIQ+ +LRHPP P +S+ +Y V+SG+G ++S Sbjct 190 RPVRNYDTAFFWEGVDQGELRIQKCTGCQTLRHPPAPMCPACQSLEWDYCVASGKGHIYS 249 Query 246 FVVHHAPKVPGRTVPFVIALVELEEGVRMLGELRGADPARVAIGMPVRATYIDF-PDWSL 304 +VV+H P++P P + LV+L+EG R++ L G + IG VRA +++ P ++L Sbjct 250 YVVNHYPEIPPFDYPNPVVLVQLDEGTRLVSNLVGTKARDIKIGTRVRAEFVEVEPGFTL 309 Query 305 YAW 307 + + Sbjct 310 HQF 312 Lambda K H 0.319 0.138 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 533708119992 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40