BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3557c

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610693|ref|NP_218074.1|  TetR family transcriptional regulat...   409    1e-112
gi|339299977|gb|AEJ52087.1|  TetR family transcriptional regulato...   402    2e-110
gi|296166592|ref|ZP_06849022.1|  TetR family transcriptional regu...   374    3e-102
gi|254822640|ref|ZP_05227641.1|  hypothetical protein MintA_22114...   371    4e-101
gi|240169771|ref|ZP_04748430.1|  putative transcriptional regulat...   369    1e-100
gi|183985014|ref|YP_001853305.1|  TetR family transcriptional reg...   368    2e-100
gi|41406607|ref|NP_959443.1|  hypothetical protein MAP0509 [Mycob...   363    7e-99 
gi|342862386|ref|ZP_08719026.1|  hypothetical protein MCOL_25963 ...   357    6e-97 
gi|118464357|ref|YP_879883.1|  TetR family transcriptional regula...   355    1e-96 
gi|118619302|ref|YP_907634.1|  TetR family transcriptional regula...   343    1e-92 
gi|126437640|ref|YP_001073331.1|  TetR family transcriptional reg...   337    5e-91 
gi|108801654|ref|YP_641851.1|  TetR family transcriptional regula...   337    8e-91 
gi|120406231|ref|YP_956060.1|  TetR family transcriptional regula...   337    9e-91 
gi|333992354|ref|YP_004524968.1|  TetR family transcriptional reg...   318    3e-85 
gi|118473595|ref|YP_890234.1|  TetR family transcriptional regula...   316    1e-84 
gi|145222075|ref|YP_001132753.1|  TetR family transcriptional reg...   314    5e-84 
gi|169627702|ref|YP_001701351.1|  TetR family transcriptional reg...   276    9e-73 
gi|325674925|ref|ZP_08154612.1|  TetR family transcriptional regu...   251    3e-65 
gi|326384056|ref|ZP_08205739.1|  regulatory protein TetR [Gordoni...   251    3e-65 
gi|312138171|ref|YP_004005507.1|  tetr family transcriptional reg...   251    4e-65 
gi|54022453|ref|YP_116695.1|  putative transcriptional regulator ...   244    7e-63 
gi|343928262|ref|ZP_08767716.1|  putative TetR family transcripti...   242    2e-62 
gi|226363953|ref|YP_002781735.1|  TetR family transcriptional reg...   236    2e-60 
gi|111021570|ref|YP_704542.1|  transcriptional regulator [Rhodoco...   235    2e-60 
gi|226304382|ref|YP_002764340.1|  TetR family transcriptional reg...   234    4e-60 
gi|118138314|pdb|2IBD|A  Chain A, Crystal Structure Of Probable T...   232    3e-59 
gi|262203847|ref|YP_003275055.1|  TetR family transcriptional reg...   232    3e-59 
gi|319947741|ref|ZP_08021947.1|  putative TetR family transcripti...   231    5e-59 
gi|296141504|ref|YP_003648747.1|  TetR family transcriptional reg...   230    7e-59 
gi|311744275|ref|ZP_07718079.1|  TetR family transcriptional regu...   216    2e-54 
gi|119716989|ref|YP_923954.1|  regulatory protein TetR [Nocardioi...   215    4e-54 
gi|333918618|ref|YP_004492199.1|  regulatory protein TetR [Amycol...   209    2e-52 
gi|256390569|ref|YP_003112133.1|  TetR family transcriptional reg...   201    4e-50 
gi|337769596|emb|CCB78309.1|  TetR-family transcriptional regulat...   197    9e-49 
gi|345011419|ref|YP_004813773.1|  TetR family transcriptional reg...   196    2e-48 
gi|291443923|ref|ZP_06583313.1|  TetR-family transcriptional regu...   193    1e-47 
gi|297155145|gb|ADI04857.1|  TetR family transcriptional regulato...   193    1e-47 
gi|239986975|ref|ZP_04707639.1|  TetR family transcriptional regu...   193    1e-47 
gi|302539964|ref|ZP_07292306.1|  TetR family transcriptional regu...   192    2e-47 
gi|302549245|ref|ZP_07301587.1|  TetR-family transcriptional regu...   191    4e-47 
gi|302533881|ref|ZP_07286223.1|  TetR-family transcriptional regu...   191    5e-47 
gi|326779938|ref|ZP_08239203.1|  transcriptional regulator, TetR ...   191    6e-47 
gi|182439286|ref|YP_001827005.1|  TetR family transcriptional reg...   191    7e-47 
gi|297198997|ref|ZP_06916394.1|  TetR family transcriptional regu...   190    9e-47 
gi|297194955|ref|ZP_06912353.1|  TetR-family transcriptional regu...   190    1e-46 
gi|326328935|ref|ZP_08195266.1|  transcriptional regulator, TetR ...   188    3e-46 
gi|29832740|ref|NP_827374.1|  TetR family transcriptional regulat...   188    4e-46 
gi|254387118|ref|ZP_05002391.1|  TetR-family transcriptional regu...   188    4e-46 
gi|312195765|ref|YP_004015826.1|  TetR family transcriptional reg...   186    1e-45 
gi|328881713|emb|CCA54952.1|  Transcriptional factor in putative ...   186    2e-45 


>gi|15610693|ref|NP_218074.1| TetR family transcriptional regulator [Mycobacterium tuberculosis 
H37Rv]
 gi|15843169|ref|NP_338206.1| TetR family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|31794733|ref|NP_857226.1| TetR family transcriptional regulator [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=200

 Score =  409 bits (1051),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 200/200 (100%), Positives = 200/200 (100%), Gaps = 0/200 (0%)

Query  1    MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDE  60
            MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDE
Sbjct  1    MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDE  60

Query  61   LLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPR  120
            LLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPR
Sbjct  61   LLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPR  120

Query  121  FSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTA  180
            FSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTA
Sbjct  121  FSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTA  180

Query  181  QQVGQQYLAIVLGGITKEGV  200
            QQVGQQYLAIVLGGITKEGV
Sbjct  181  QQVGQQYLAIVLGGITKEGV  200


>gi|339299977|gb|AEJ52087.1| TetR family transcriptional regulator [Mycobacterium tuberculosis 
CCDC5180]
Length=197

 Score =  402 bits (1032),  Expect = 2e-110, Method: Compositional matrix adjust.
 Identities = 196/197 (99%), Positives = 197/197 (100%), Gaps = 0/197 (0%)

Query  4    VAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLR  63
            +AGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLR
Sbjct  1    MAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLR  60

Query  64   GFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSY  123
            GFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSY
Sbjct  61   GFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSY  120

Query  124  IEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQV  183
            IEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQV
Sbjct  121  IEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQV  180

Query  184  GQQYLAIVLGGITKEGV  200
            GQQYLAIVLGGITKEGV
Sbjct  181  GQQYLAIVLGGITKEGV  197


>gi|296166592|ref|ZP_06849022.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898078|gb|EFG77654.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=200

 Score =  374 bits (961),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 180/200 (90%), Positives = 191/200 (96%), Gaps = 0/200 (0%)

Query  1    MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDE  60
            M+RVAGQ NSRR ELLELAA MFAERGLRATTVRDIAD AGILSGSLYHHF+SKEEMVDE
Sbjct  1    MERVAGQANSRRDELLELAATMFAERGLRATTVRDIADSAGILSGSLYHHFSSKEEMVDE  60

Query  61   LLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPR  120
            LLR FLDWLFARYR+IVDS ANPLERL+GLFMASFEAIEH HAQVVIYQDEAQRL SQPR
Sbjct  61   LLRSFLDWLFARYREIVDSEANPLERLKGLFMASFEAIEHRHAQVVIYQDEAQRLLSQPR  120

Query  121  FSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTA  180
            FSYIED N+QQRKMWV+V+NQGI+EGYF+PDL+VDLVYRFIRDTTWVSVRWY+PGGPLTA
Sbjct  121  FSYIEDMNRQQRKMWVEVINQGIDEGYFQPDLNVDLVYRFIRDTTWVSVRWYQPGGPLTA  180

Query  181  QQVGQQYLAIVLGGITKEGV  200
            QQVGQQYLAIVLGGITKEGV
Sbjct  181  QQVGQQYLAIVLGGITKEGV  200


>gi|254822640|ref|ZP_05227641.1| hypothetical protein MintA_22114 [Mycobacterium intracellulare 
ATCC 13950]
Length=200

 Score =  371 bits (952),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 178/200 (89%), Positives = 189/200 (95%), Gaps = 0/200 (0%)

Query  1    MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDE  60
            MDRV GQ NSRR ELLELAA MFAERGLRATTVRDIAD AGILSGSLYHHF+SKEEMVDE
Sbjct  1    MDRVTGQANSRRDELLELAATMFAERGLRATTVRDIADSAGILSGSLYHHFSSKEEMVDE  60

Query  61   LLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPR  120
            LLR FLDWLFARYR+IVD  ANPLERL+GLFMASFEAIEH HAQVVIYQDEAQRL SQPR
Sbjct  61   LLRSFLDWLFARYREIVDGEANPLERLKGLFMASFEAIEHRHAQVVIYQDEAQRLLSQPR  120

Query  121  FSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTA  180
            FSYIED N+QQRKMW+++L+QG++EGYFRPDLDVDLVYRFIRDTTWVSVRWY+PGGPLTA
Sbjct  121  FSYIEDMNRQQRKMWLELLHQGVDEGYFRPDLDVDLVYRFIRDTTWVSVRWYQPGGPLTA  180

Query  181  QQVGQQYLAIVLGGITKEGV  200
            QQVGQQYLAIVLGGITKEGV
Sbjct  181  QQVGQQYLAIVLGGITKEGV  200


>gi|240169771|ref|ZP_04748430.1| putative transcriptional regulatory protein [Mycobacterium kansasii 
ATCC 12478]
Length=200

 Score =  369 bits (948),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 179/200 (90%), Positives = 189/200 (95%), Gaps = 0/200 (0%)

Query  1    MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDE  60
            MDRVAGQ  SRR ELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHF+SKEEMVDE
Sbjct  1    MDRVAGQAISRRDELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFSSKEEMVDE  60

Query  61   LLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPR  120
            LLRGFLDWLF RYR+IVD+  NPLERL+GLFMASFEAIEH HAQVVIYQDEAQRL+SQPR
Sbjct  61   LLRGFLDWLFNRYREIVDTEPNPLERLKGLFMASFEAIEHRHAQVVIYQDEAQRLSSQPR  120

Query  121  FSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTA  180
            FSY+EDRNKQQRKMWV+VL QGI EGYFRPDLDVDLVYRFIRDTTWVSVRWY+PGGPLTA
Sbjct  121  FSYLEDRNKQQRKMWVEVLKQGIAEGYFRPDLDVDLVYRFIRDTTWVSVRWYQPGGPLTA  180

Query  181  QQVGQQYLAIVLGGITKEGV  200
            +QVG  YLAIVLGGIT+EGV
Sbjct  181  EQVGLNYLAIVLGGITREGV  200


>gi|183985014|ref|YP_001853305.1| TetR family transcriptional regulator [Mycobacterium marinum 
M]
 gi|183178340|gb|ACC43450.1| transcriptional regulatory protein (probably TetR-family) [Mycobacterium 
marinum M]
Length=200

 Score =  368 bits (945),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 178/200 (89%), Positives = 188/200 (94%), Gaps = 0/200 (0%)

Query  1    MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDE  60
            M+R+ GQ NSRRGELL LAA MFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDE
Sbjct  1    MERMTGQANSRRGELLGLAAVMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDE  60

Query  61   LLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPR  120
            LLR FLDWLFARY +IVD   NPLERL+GLF+ASFEAIEH HAQVVIYQDEAQRL+SQPR
Sbjct  61   LLREFLDWLFARYLEIVDGEPNPLERLKGLFLASFEAIEHRHAQVVIYQDEAQRLSSQPR  120

Query  121  FSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTA  180
            FSY+EDRNK+QRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWY+PGG LTA
Sbjct  121  FSYLEDRNKEQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYKPGGALTA  180

Query  181  QQVGQQYLAIVLGGITKEGV  200
            QQVGQ+YLAIVLGGI KEGV
Sbjct  181  QQVGQKYLAIVLGGIQKEGV  200


>gi|41406607|ref|NP_959443.1| hypothetical protein MAP0509 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394956|gb|AAS02826.1| hypothetical protein MAP_0509 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=202

 Score =  363 bits (932),  Expect = 7e-99, Method: Compositional matrix adjust.
 Identities = 172/196 (88%), Positives = 186/196 (95%), Gaps = 0/196 (0%)

Query  1    MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDE  60
            MDRV G  NSRR ELLELAAAMFAERGLRATTVRDIAD AGILSGSLYHHF+SKEEMVDE
Sbjct  1    MDRVTGPANSRRDELLELAAAMFAERGLRATTVRDIADSAGILSGSLYHHFSSKEEMVDE  60

Query  61   LLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPR  120
            +LR FLDWLFARYR+I+DS +NPLERL+GLFMASFEAIEH HAQVVIYQDEA+RL SQPR
Sbjct  61   VLRSFLDWLFARYREIIDSESNPLERLKGLFMASFEAIEHRHAQVVIYQDEAKRLLSQPR  120

Query  121  FSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTA  180
            FSYIED N+QQRKMW++VLNQG++EGYFRPDLDVDLVYRFIRDTTWVSVRWY+PGGPLTA
Sbjct  121  FSYIEDMNRQQRKMWLEVLNQGVDEGYFRPDLDVDLVYRFIRDTTWVSVRWYQPGGPLTA  180

Query  181  QQVGQQYLAIVLGGIT  196
            +QVGQQYLAIVLGGIT
Sbjct  181  EQVGQQYLAIVLGGIT  196


>gi|342862386|ref|ZP_08719026.1| hypothetical protein MCOL_25963 [Mycobacterium colombiense CECT 
3035]
 gi|342130057|gb|EGT83391.1| hypothetical protein MCOL_25963 [Mycobacterium colombiense CECT 
3035]
Length=203

 Score =  357 bits (915),  Expect = 6e-97, Method: Compositional matrix adjust.
 Identities = 170/196 (87%), Positives = 182/196 (93%), Gaps = 0/196 (0%)

Query  4    VAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLR  63
            + GQ NSRR ELLELAA MFAERGLRATTVRDIAD AGILSGSLYHHF+SKEEMVDELLR
Sbjct  1    MPGQANSRRDELLELAATMFAERGLRATTVRDIADSAGILSGSLYHHFSSKEEMVDELLR  60

Query  64   GFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSY  123
             FLDWLFARYR+IVDS ANPLERL+GLFMASFEAIEH HAQVVIYQDEAQRL SQPRFSY
Sbjct  61   SFLDWLFARYREIVDSEANPLERLKGLFMASFEAIEHRHAQVVIYQDEAQRLLSQPRFSY  120

Query  124  IEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQV  183
            IED N+QQRKMW+++LNQG+ EG FRPDLDVDL+YRFIRDTTWVSVRWY+PGGPLTA+QV
Sbjct  121  IEDMNRQQRKMWLELLNQGVAEGCFRPDLDVDLIYRFIRDTTWVSVRWYQPGGPLTAEQV  180

Query  184  GQQYLAIVLGGITKEG  199
            GQQYLAIVLGGIT E 
Sbjct  181  GQQYLAIVLGGITAES  196


>gi|118464357|ref|YP_879883.1| TetR family transcriptional regulator [Mycobacterium avium 104]
 gi|254773560|ref|ZP_05215076.1| hypothetical protein MaviaA2_02635 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118165644|gb|ABK66541.1| transcriptional regulator, TetR family protein [Mycobacterium 
avium 104]
 gi|336458503|gb|EGO37476.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=199

 Score =  355 bits (912),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 168/193 (88%), Positives = 183/193 (95%), Gaps = 0/193 (0%)

Query  4    VAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLR  63
            + G  NSRR ELLELAAAMFAERGLRATTVRDIAD AGILSGSLYHHF+SKEEMVDE+LR
Sbjct  1    MTGPANSRRDELLELAAAMFAERGLRATTVRDIADSAGILSGSLYHHFSSKEEMVDEVLR  60

Query  64   GFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSY  123
             FLDWLFARYR+I+DS +NPLERL+GLFMASFEAIEH HAQVVIYQDEA+RL SQPRFSY
Sbjct  61   SFLDWLFARYREIIDSESNPLERLKGLFMASFEAIEHRHAQVVIYQDEAKRLLSQPRFSY  120

Query  124  IEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQV  183
            IED N+QQRKMW++VLNQG++EGYFRPDLDVDLVYRFIRDTTWVSVRWY+PGGPLTA+QV
Sbjct  121  IEDMNRQQRKMWLEVLNQGVDEGYFRPDLDVDLVYRFIRDTTWVSVRWYQPGGPLTAEQV  180

Query  184  GQQYLAIVLGGIT  196
            GQQYLAIVLGGIT
Sbjct  181  GQQYLAIVLGGIT  193


>gi|118619302|ref|YP_907634.1| TetR family transcriptional regulator [Mycobacterium ulcerans 
Agy99]
 gi|118571412|gb|ABL06163.1| transcriptional regulatory protein (probably TetR-family) [Mycobacterium 
ulcerans Agy99]
Length=185

 Score =  343 bits (879),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 165/183 (91%), Positives = 174/183 (96%), Gaps = 0/183 (0%)

Query  18   LAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDIV  77
            LAA MFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLR FLDWLFARY +IV
Sbjct  3    LAAVMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLREFLDWLFARYLEIV  62

Query  78   DSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQQRKMWVD  137
            D   NPLERL+GLF+ASFEAIEH HAQVVIYQDEAQRL+SQPRFSY+EDRNK+QRKMW+D
Sbjct  63   DGEPNPLERLKGLFLASFEAIEHRHAQVVIYQDEAQRLSSQPRFSYLEDRNKEQRKMWLD  122

Query  138  VLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAIVLGGITK  197
            VLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWY+PGG LTAQQVGQ+YLAIVLGGI K
Sbjct  123  VLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYKPGGALTAQQVGQKYLAIVLGGIQK  182

Query  198  EGV  200
            EGV
Sbjct  183  EGV  185


>gi|126437640|ref|YP_001073331.1| TetR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|126237440|gb|ABO00841.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS]
Length=215

 Score =  337 bits (864),  Expect = 5e-91, Method: Compositional matrix adjust.
 Identities = 158/193 (82%), Positives = 177/193 (92%), Gaps = 0/193 (0%)

Query  4    VAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLR  63
             AGQ  +RR ELLELAA MFAERGLRATTVRDIAD AGILSGSLYHHF+SKEEM+DELLR
Sbjct  5    AAGQPPTRRDELLELAATMFAERGLRATTVRDIADSAGILSGSLYHHFSSKEEMIDELLR  64

Query  64   GFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSY  123
            GFLDWLF RY  IV +  NPLERL+GLFMASFEAI   HAQVVIYQDEA+RL+SQPRFSY
Sbjct  65   GFLDWLFERYHQIVATEPNPLERLKGLFMASFEAIATRHAQVVIYQDEAKRLSSQPRFSY  124

Query  124  IEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQV  183
            +E+RN++QRKMWV+VLNQGI EGYFRPD+DVDL+YRFIRDTTWVSVRWY+PGGPLTA++V
Sbjct  125  VEERNREQRKMWVEVLNQGIAEGYFRPDIDVDLIYRFIRDTTWVSVRWYQPGGPLTAEEV  184

Query  184  GQQYLAIVLGGIT  196
            G+QYL+IVLGGIT
Sbjct  185  GRQYLSIVLGGIT  197


>gi|108801654|ref|YP_641851.1| TetR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870805|ref|YP_940757.1| TetR family transcriptional regulator [Mycobacterium sp. KMS]
 gi|108772073|gb|ABG10795.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS]
 gi|119696894|gb|ABL93967.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS]
Length=205

 Score =  337 bits (863),  Expect = 8e-91, Method: Compositional matrix adjust.
 Identities = 158/192 (83%), Positives = 177/192 (93%), Gaps = 0/192 (0%)

Query  5    AGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRG  64
            AGQ  +RR ELLELAA MFAERGLRATTVRDIAD AGILSGSLYHHF+SKEEM+DELLRG
Sbjct  6    AGQPPTRRDELLELAATMFAERGLRATTVRDIADSAGILSGSLYHHFSSKEEMIDELLRG  65

Query  65   FLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYI  124
            FLDWLF RY  IV +  NPLERL+GLFMASFEAI   HAQVVIYQDEA+RL+SQPRFSY+
Sbjct  66   FLDWLFERYHQIVATEPNPLERLKGLFMASFEAIATRHAQVVIYQDEAKRLSSQPRFSYV  125

Query  125  EDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVG  184
            E+RN++QRKMWV+VLNQGI EGYFRPD+DVDL+YRFIRDTTWVSVRWY+PGGPLTA++VG
Sbjct  126  EERNREQRKMWVEVLNQGIAEGYFRPDIDVDLIYRFIRDTTWVSVRWYQPGGPLTAEEVG  185

Query  185  QQYLAIVLGGIT  196
            +QYL+IVLGGIT
Sbjct  186  RQYLSIVLGGIT  197


>gi|120406231|ref|YP_956060.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii 
PYR-1]
 gi|119959049|gb|ABM16054.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii 
PYR-1]
Length=208

 Score =  337 bits (863),  Expect = 9e-91, Method: Compositional matrix adjust.
 Identities = 159/194 (82%), Positives = 179/194 (93%), Gaps = 0/194 (0%)

Query  5    AGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRG  64
            A Q N+RR ELL+LAA MFAERGLRATTVRDIAD AGILSGSLYHHF+SKEEMVDE+LRG
Sbjct  6    APQANTRRDELLQLAATMFAERGLRATTVRDIADSAGILSGSLYHHFSSKEEMVDEVLRG  65

Query  65   FLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYI  124
            FLDWLF RY+ IV +  NPLERL+GLFMASFEAIE  HA+VVIYQDEA+RL++Q RF+Y+
Sbjct  66   FLDWLFDRYQQIVATEPNPLERLKGLFMASFEAIETRHAEVVIYQDEAKRLSAQGRFAYV  125

Query  125  EDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVG  184
            E+RNK+QRKMWVDVL QGI+EGYFRPD+DVDLVYRFIRDTTWVSVRWY+PGGPLTAQQVG
Sbjct  126  EERNKEQRKMWVDVLTQGIDEGYFRPDVDVDLVYRFIRDTTWVSVRWYQPGGPLTAQQVG  185

Query  185  QQYLAIVLGGITKE  198
            +QYL+IVLGGIT E
Sbjct  186  RQYLSIVLGGITAE  199


>gi|333992354|ref|YP_004524968.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601]
 gi|333488322|gb|AEF37714.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601]
Length=195

 Score =  318 bits (815),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 148/188 (79%), Positives = 172/188 (92%), Gaps = 0/188 (0%)

Query  10   SRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWL  69
            +RR ELL LAAAM AERGLRATTVRDIAD AGILSGSLYHHF+SKEEMVDE+LR FLDWL
Sbjct  2    TRRDELLSLAAAMIAERGLRATTVRDIADAAGILSGSLYHHFSSKEEMVDEVLRDFLDWL  61

Query  70   FARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNK  129
            F RY+ I+D+ ++P+ER +GLF+ASF+AIEH HAQVVIYQDEA+RL+SQ RF Y+++RN+
Sbjct  62   FERYQQIIDTESDPMERFKGLFLASFDAIEHRHAQVVIYQDEAKRLSSQERFGYVDERNR  121

Query  130  QQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLA  189
            QQRKMW+DVL QG E G FRPDLDVDLVYRFIRDTTWVSVRWY+PGGPLTA+QVG+QYLA
Sbjct  122  QQRKMWIDVLQQGAEAGCFRPDLDVDLVYRFIRDTTWVSVRWYQPGGPLTAEQVGRQYLA  181

Query  190  IVLGGITK  197
            IVLGGI++
Sbjct  182  IVLGGISE  189


>gi|118473595|ref|YP_890234.1| TetR family transcriptional regulator [Mycobacterium smegmatis 
str. MC2 155]
 gi|322518315|sp|A0R4Z6.1|KSTR2_MYCS2 RecName: Full=HTH-type transcriptional repressor KstR2
 gi|118174882|gb|ABK75778.1| transcriptional regulator, TetR family protein [Mycobacterium 
smegmatis str. MC2 155]
Length=205

 Score =  316 bits (810),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 146/194 (76%), Positives = 171/194 (89%), Gaps = 0/194 (0%)

Query  4    VAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLR  63
               Q  SRR ELL+LAA MFA+RGL+ATTVRDIAD AGILSGSLYHHF SKE+MV+E+LR
Sbjct  5    TPSQPASRRDELLQLAATMFADRGLKATTVRDIADSAGILSGSLYHHFKSKEQMVEEVLR  64

Query  64   GFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSY  123
             FLDWLF RY+ I+D+  +PLE+L GLFMASFEAIEH HAQVVIYQDEA+RL+  P+F +
Sbjct  65   DFLDWLFGRYQQILDTATSPLEKLTGLFMASFEAIEHRHAQVVIYQDEAKRLSDLPQFDF  124

Query  124  IEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQV  183
            +E RNK+QRKMWVD+L +G+ +G FRPDLDVDLVYRFIRDTTWVSVRWY+PGGPL+A+QV
Sbjct  125  VETRNKEQRKMWVDILQEGVADGSFRPDLDVDLVYRFIRDTTWVSVRWYKPGGPLSAEQV  184

Query  184  GQQYLAIVLGGITK  197
            GQQYLAIVLGGIT+
Sbjct  185  GQQYLAIVLGGITQ  198


>gi|145222075|ref|YP_001132753.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
 gi|315446183|ref|YP_004079062.1| TetR family transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|145214561|gb|ABP43965.1| transcriptional regulator, TetR family [Mycobacterium gilvum 
PYR-GCK]
 gi|315264486|gb|ADU01228.1| transcriptional regulator, TetR family [Mycobacterium sp. Spyr1]
Length=197

 Score =  314 bits (804),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 150/197 (77%), Positives = 174/197 (89%), Gaps = 3/197 (1%)

Query  1    MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDE  60
            MDR    + SRR ELL+LAA MFA+RGLRATTVRDIAD AGILSGSLYHHF SKE+MV+E
Sbjct  1    MDRA---LPSRRDELLQLAATMFADRGLRATTVRDIADSAGILSGSLYHHFKSKEQMVEE  57

Query  61   LLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPR  120
            +L+ FLDWLF RY +IV +T +PLER+ GLFM SFEAIEH HAQVVIYQDEA+RL S P+
Sbjct  58   VLKDFLDWLFTRYDEIVAATTDPLERVSGLFMVSFEAIEHRHAQVVIYQDEAKRLNSLPQ  117

Query  121  FSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTA  180
            F +++DRN+QQR+MWV+VL QGI EG FRPD+DVDLVYRFIRDTTWVSVRWY+PGGPLTA
Sbjct  118  FGFLDDRNRQQRRMWVEVLKQGIAEGSFRPDIDVDLVYRFIRDTTWVSVRWYQPGGPLTA  177

Query  181  QQVGQQYLAIVLGGITK  197
            +QVG+QYLAIVLGGIT+
Sbjct  178  EQVGRQYLAIVLGGITE  194


>gi|169627702|ref|YP_001701351.1| TetR family transcriptional regulator [Mycobacterium abscessus 
ATCC 19977]
 gi|169239669|emb|CAM60697.1| Probable transcriptional regulator TetR family [Mycobacterium 
abscessus]
Length=218

 Score =  276 bits (707),  Expect = 9e-73, Method: Compositional matrix adjust.
 Identities = 133/187 (72%), Positives = 156/187 (84%), Gaps = 0/187 (0%)

Query  10   SRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWL  69
            SRR ELL LAA MFAERGLRATTVRDIAD AGILSGSLYHHF SKE +VDELLR FL+ L
Sbjct  22   SRRDELLSLAAEMFAERGLRATTVRDIADAAGILSGSLYHHFDSKEAIVDELLRDFLEGL  81

Query  70   FARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNK  129
            FARYR+I  +  NP++ L+GLF+ASF+AIE  HAQV IYQ EA RL SQ RF+Y+ + N 
Sbjct  82   FARYREIAAANLNPVDTLKGLFLASFDAIETKHAQVAIYQAEAPRLLSQERFAYLNELNT  141

Query  130  QQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLA  189
            +QR++W++VL  GI +GYFRPDLDV +VYRFIRD TWVSVRW+RPGG  TAQ+V +QYL+
Sbjct  142  EQRQLWLEVLRDGIAQGYFRPDLDVAVVYRFIRDATWVSVRWFRPGGSRTAQEVAEQYLS  201

Query  190  IVLGGIT  196
            IVLGGIT
Sbjct  202  IVLGGIT  208


>gi|325674925|ref|ZP_08154612.1| TetR family transcriptional regulator [Rhodococcus equi ATCC 
33707]
 gi|325554511|gb|EGD24186.1| TetR family transcriptional regulator [Rhodococcus equi ATCC 
33707]
Length=210

 Score =  251 bits (642),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 120/189 (64%), Positives = 147/189 (78%), Gaps = 0/189 (0%)

Query  9    NSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDW  68
            + RR ELLELAA +FAERGLRATTVRDIAD AGILSGSLYHHF SKE MVDE+LRGF D 
Sbjct  17   SGRRAELLELAAGLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFQDD  76

Query  69   LFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRN  128
            LF RYR+IV +     E  + L +ASFEAI+  H+ V IYQDE + LAS  RF+Y+ +RN
Sbjct  77   LFGRYREIVAAGMGSRETFEALVIASFEAIDASHSAVAIYQDEVKHLASNERFAYLAERN  136

Query  129  KQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYL  188
            ++ R +WV VL  G+ +G FR DLDV++V+RF+RDT WV+VRWYRPGGPLTA+ V +QYL
Sbjct  137  QEFRDLWVGVLEAGVADGSFRQDLDVEIVFRFMRDTVWVAVRWYRPGGPLTAEAVAKQYL  196

Query  189  AIVLGGITK  197
            +IVL G+  
Sbjct  197  SIVLDGLAS  205


>gi|326384056|ref|ZP_08205739.1| regulatory protein TetR [Gordonia neofelifaecis NRRL B-59395]
 gi|326197216|gb|EGD54407.1| regulatory protein TetR [Gordonia neofelifaecis NRRL B-59395]
Length=199

 Score =  251 bits (642),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 119/186 (64%), Positives = 148/186 (80%), Gaps = 0/186 (0%)

Query  10   SRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWL  69
            SRR ELL +A  +FA+RGLR+TTVRDIAD AGILSGSLYHHF SKE MVDELLRGFLD L
Sbjct  11   SRRDELLGIAGQLFADRGLRSTTVRDIADAAGILSGSLYHHFDSKESMVDELLRGFLDSL  70

Query  70   FARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNK  129
            FARYRDI D+  +  + ++ L +ASFEAI+  H  V IYQ+E+++L +Q RF YI +RN 
Sbjct  71   FARYRDITDAGLSATDTIRQLVIASFEAIDSRHTAVAIYQNESRQLIAQERFEYIAERNL  130

Query  130  QQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLA  189
            + RK+W  VL +G++EG FR DLD+DLVYRF+RDT WV+VRWYRPGG +T +Q+  QYL+
Sbjct  131  EFRKLWESVLRRGVQEGDFRADLDIDLVYRFMRDTVWVAVRWYRPGGSMTVEQIADQYLS  190

Query  190  IVLGGI  195
            IVL GI
Sbjct  191  IVLDGI  196


>gi|312138171|ref|YP_004005507.1| tetr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311887510|emb|CBH46822.1| TetR family transcriptional regulator [Rhodococcus equi 103S]
Length=222

 Score =  251 bits (641),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 120/189 (64%), Positives = 147/189 (78%), Gaps = 0/189 (0%)

Query  9    NSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDW  68
            + RR ELLELAA +FAERGLRATTVRDIAD AGILSGSLYHHF SKE MVDE+LRGF D 
Sbjct  29   SGRRAELLELAAGLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFQDD  88

Query  69   LFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRN  128
            LF RYR+IV +     E  + L +ASFEAI+  H+ V IYQDE + LAS  RF+Y+ +RN
Sbjct  89   LFGRYREIVAAGMGSRETFEALVIASFEAIDASHSAVAIYQDEVKHLASNERFAYLAERN  148

Query  129  KQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYL  188
            ++ R +WV VL  G+ +G FR DLDV++V+RF+RDT WV+VRWYRPGGPLTA+ V +QYL
Sbjct  149  QEFRDLWVGVLEAGVADGSFRQDLDVEIVFRFMRDTVWVAVRWYRPGGPLTAEAVAKQYL  208

Query  189  AIVLGGITK  197
            +IVL G+  
Sbjct  209  SIVLDGLAS  217


>gi|54022453|ref|YP_116695.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54013961|dbj|BAD55331.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=212

 Score =  244 bits (622),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 115/188 (62%), Positives = 146/188 (78%), Gaps = 0/188 (0%)

Query  9    NSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDW  68
            ++RR ELL LAA +FAERGLRATTVRDIAD AGILSGSLYHHF SKE MVDE+LRGFLD 
Sbjct  17   STRRTELLGLAAELFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDD  76

Query  69   LFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRN  128
            LF RYR+IV +  +  + L+ L +AS+E+ +  HA V IYQ EA+RL    RF+YI++ N
Sbjct  77   LFGRYREIVAAGLSSRDTLEALVLASYESFDRSHAAVAIYQAEAKRLRDAERFAYIDEYN  136

Query  129  KQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYL  188
            ++ R +W  VL  G+ +G FRP+LDV+L YRF+RDT WV+VRWYRPGGP+T + + +QYL
Sbjct  137  REFRALWHRVLTNGVADGSFRPELDVELAYRFLRDTVWVAVRWYRPGGPITVENLAKQYL  196

Query  189  AIVLGGIT  196
             IVL G+T
Sbjct  197  TIVLDGLT  204


>gi|343928262|ref|ZP_08767716.1| putative TetR family transcriptional regulator [Gordonia alkanivorans 
NBRC 16433]
 gi|343761856|dbj|GAA14642.1| putative TetR family transcriptional regulator [Gordonia alkanivorans 
NBRC 16433]
Length=210

 Score =  242 bits (618),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 118/187 (64%), Positives = 145/187 (78%), Gaps = 0/187 (0%)

Query  9    NSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDW  68
            +SRR ELL  A  MFAE GLR+TTVRDIAD AGILSGSLYHHF SKE MVDE+LR FLD 
Sbjct  21   SSRRDELLATAGRMFAENGLRSTTVRDIADAAGILSGSLYHHFDSKESMVDEILRRFLDD  80

Query  69   LFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRN  128
            LFARYR+I  +  +  E L+GL +ASFE+I+     V IYQDEA+RL+ Q RF YI + N
Sbjct  81   LFARYREIAGAGLSASETLRGLVVASFESIDAERNAVAIYQDEAKRLSGQERFGYIGELN  140

Query  129  KQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYL  188
             + R++W  VL +G+++G FRPDLDV+LVYRF+RDT WV+VRWYRPGGP+T + +  QYL
Sbjct  141  VEFRQLWHAVLQRGVDDGEFRPDLDVELVYRFMRDTVWVAVRWYRPGGPMTVESIADQYL  200

Query  189  AIVLGGI  195
            +IVL GI
Sbjct  201  SIVLDGI  207


>gi|226363953|ref|YP_002781735.1| TetR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242442|dbj|BAH52790.1| putative TetR family transcriptional regulator [Rhodococcus opacus 
B4]
Length=203

 Score =  236 bits (601),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 109/187 (59%), Positives = 141/187 (76%), Gaps = 0/187 (0%)

Query  9    NSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDW  68
              RR ELL++AA +FAERGLRATTVRDIAD AGILSGSLYHHF SKE MVDE+LRGFLD 
Sbjct  14   TGRRAELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDD  73

Query  69   LFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRN  128
            LF +YR+IV S  +    L+ L   S+EAI+  H+ V IYQDE + L +  RF+Y+ + N
Sbjct  74   LFGKYREIVASGLDARATLEALVTTSYEAIDASHSAVAIYQDEVKHLVANERFAYLSELN  133

Query  129  KQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYL  188
             + R++W+ VL  G+++G FR D+DV+L +RF+RDT WV+VRWYRPGG +T   V +QYL
Sbjct  134  TEFRELWMGVLETGVKDGTFRADIDVELAFRFLRDTAWVAVRWYRPGGSVTVDTVAKQYL  193

Query  189  AIVLGGI  195
            +IVL G+
Sbjct  194  SIVLDGL  200


>gi|111021570|ref|YP_704542.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|123045895|sp|Q0S7V2.1|KSTR2_RHOSR RecName: Full=HTH-type transcriptional repressor KstR2
 gi|110821100|gb|ABG96384.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
Length=204

 Score =  235 bits (600),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 111/194 (58%), Positives = 146/194 (76%), Gaps = 1/194 (0%)

Query  2    DRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDEL  61
            D  +G+ + RR ELL++AA +FAERGLRATTVRDIAD AGILSGSLYHHF SKE MVDE+
Sbjct  7    DDTSGK-SGRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEI  65

Query  62   LRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRF  121
            LRGFLD LF +YR+IV S  +    L+ L   S+EAI+  H+ V IYQDE + L +  RF
Sbjct  66   LRGFLDDLFGKYREIVASGLDSRATLEALVTTSYEAIDASHSAVAIYQDEVKHLVANERF  125

Query  122  SYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQ  181
            +Y+ + N + R++W+ VL  G+++G FR D+DV+L +RF+RDT WV+VRWYRPGG +T  
Sbjct  126  TYLSELNTEFRELWMGVLEAGVKDGSFRSDIDVELAFRFLRDTAWVAVRWYRPGGSVTVD  185

Query  182  QVGQQYLAIVLGGI  195
             V +QYL+IVL G+
Sbjct  186  TVAKQYLSIVLDGL  199


>gi|226304382|ref|YP_002764340.1| TetR family transcriptional regulator [Rhodococcus erythropolis 
PR4]
 gi|229494490|ref|ZP_04388253.1| transcriptional regulator, TetR family [Rhodococcus erythropolis 
SK121]
 gi|226183497|dbj|BAH31601.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis 
PR4]
 gi|229318852|gb|EEN84710.1| transcriptional regulator, TetR family [Rhodococcus erythropolis 
SK121]
Length=223

 Score =  234 bits (598),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 110/188 (59%), Positives = 141/188 (75%), Gaps = 0/188 (0%)

Query  9    NSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDW  68
            + RR ELLE+AA +FA+RG+RATTVRDIAD AGILSGSLYHHF SKE MVDE+L  FLD 
Sbjct  14   SGRRDELLEIAAGLFADRGVRATTVRDIADAAGILSGSLYHHFDSKESMVDEILHQFLDE  73

Query  69   LFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRN  128
            LF +YR+IV +  +    L+ L + S+EAI+  H+ V IYQDE + L    RF+Y+ +RN
Sbjct  74   LFGKYREIVAAGLDSRATLEALVVTSYEAIDASHSAVAIYQDEVKHLVGNERFAYLAERN  133

Query  129  KQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYL  188
             + R +WV VL  G+ +G FR D+DV+LV+RF+RDT WV+VRWYRPGG L+A  V  QYL
Sbjct  134  TEFRDLWVGVLEAGVADGTFRSDIDVELVFRFMRDTVWVAVRWYRPGGSLSAHAVAAQYL  193

Query  189  AIVLGGIT  196
            AIVL G++
Sbjct  194  AIVLDGLS  201


>gi|118138314|pdb|2IBD|A Chain A, Crystal Structure Of Probable Transcriptional Regulatory 
Protein Rha5900
 gi|118138315|pdb|2IBD|B Chain B, Crystal Structure Of Probable Transcriptional Regulatory 
Protein Rha5900
Length=204

 Score =  232 bits (591),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 110/194 (57%), Positives = 144/194 (75%), Gaps = 1/194 (0%)

Query  2    DRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDEL  61
            D  +G+ + RR ELL++AA +FAERGLRATTVRDIAD AGILSGSLYHHF SKE  VDE+
Sbjct  7    DDTSGK-SGRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESXVDEI  65

Query  62   LRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRF  121
            LRGFLD LF +YR+IV S  +    L+ L   S+EAI+  H+ V IYQDE + L +  RF
Sbjct  66   LRGFLDDLFGKYREIVASGLDSRATLEALVTTSYEAIDASHSAVAIYQDEVKHLVANERF  125

Query  122  SYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQ  181
            +Y+ + N + R++W  VL  G+++G FR D+DV+L +RF+RDT WV+VRWYRPGG +T  
Sbjct  126  TYLSELNTEFRELWXGVLEAGVKDGSFRSDIDVELAFRFLRDTAWVAVRWYRPGGSVTVD  185

Query  182  QVGQQYLAIVLGGI  195
             V +QYL+IVL G+
Sbjct  186  TVAKQYLSIVLDGL  199


>gi|262203847|ref|YP_003275055.1| TetR family transcriptional regulator [Gordonia bronchialis DSM 
43247]
 gi|262087194|gb|ACY23162.1| regulatory protein TetR [Gordonia bronchialis DSM 43247]
Length=197

 Score =  232 bits (591),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 114/187 (61%), Positives = 140/187 (75%), Gaps = 0/187 (0%)

Query  9    NSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDW  68
            ++RR ELL  A  MFAE+GLR+TTVRDIAD AGILSGSLYHHF SKE MVDE+LRGFLD 
Sbjct  8    STRRDELLATAGQMFAEQGLRSTTVRDIADAAGILSGSLYHHFDSKEAMVDEILRGFLDD  67

Query  69   LFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRN  128
            LF RYR I  +  +  E L+ L +ASFE+I+     V IYQDEA+RLA Q RF YI+  N
Sbjct  68   LFDRYRAIAAAGLSATETLRQLVIASFESIDAQRNAVAIYQDEAKRLAGQARFGYIDTLN  127

Query  129  KQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYL  188
             + R++W  VL +G+++G FR DLDV LVYRF+RDT WV+VRWYRPGG LT + +  QYL
Sbjct  128  VEFRQLWQAVLQRGVDDGEFRADLDVVLVYRFLRDTVWVAVRWYRPGGSLTVEAIADQYL  187

Query  189  AIVLGGI  195
             +VL G+
Sbjct  188  TVVLDGL  194


>gi|319947741|ref|ZP_08021947.1| putative TetR family transcriptional regulator [Dietzia cinnamea 
P4]
 gi|319438591|gb|EFV93505.1| putative TetR family transcriptional regulator [Dietzia cinnamea 
P4]
Length=193

 Score =  231 bits (589),  Expect = 5e-59, Method: Compositional matrix adjust.
 Identities = 115/187 (62%), Positives = 133/187 (72%), Gaps = 0/187 (0%)

Query  9    NSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDW  68
             +RR ELL +AA +FAERGLRATTVRDIAD AGILSGSLYHHFASKE +VDE+LRGFLD 
Sbjct  4    TTRREELLSIAAGLFAERGLRATTVRDIADAAGILSGSLYHHFASKEAIVDEILRGFLDA  63

Query  69   LFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRN  128
            LF  YR IVDS   P   L+ L  ASFEAI     +V IYQDE + L   PRF Y+ +RN
Sbjct  64   LFGEYRTIVDSGLEPRATLEALVRASFEAIHRDRDEVAIYQDELKHLRGNPRFDYLRERN  123

Query  129  KQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYL  188
             + R+MW DVL +G+E G FR DLDV L YRF+RDT WV+VRWYRP        +  QYL
Sbjct  124  TEFREMWTDVLRRGMESGDFRGDLDVRLTYRFLRDTVWVAVRWYRPDDENDHAAIADQYL  183

Query  189  AIVLGGI  195
             IVL G+
Sbjct  184  NIVLDGL  190


>gi|296141504|ref|YP_003648747.1| TetR family transcriptional regulator [Tsukamurella paurometabola 
DSM 20162]
 gi|296029638|gb|ADG80408.1| transcriptional regulator, TetR family [Tsukamurella paurometabola 
DSM 20162]
Length=204

 Score =  230 bits (587),  Expect = 7e-59, Method: Compositional matrix adjust.
 Identities = 111/189 (59%), Positives = 140/189 (75%), Gaps = 0/189 (0%)

Query  7    QVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFL  66
              ++RR ELL + A +FAE G RATTVRDIAD AGILSGSLYHHF SKE MVD++LR FL
Sbjct  5    DASTRRAELLAVCARLFAENGYRATTVRDIADAAGILSGSLYHHFDSKESMVDDILRDFL  64

Query  67   DWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIED  126
            D LF RYR ++DS ++P ++L+G  +ASF+AI+     V IYQ EA+ LA   RF+YI D
Sbjct  65   DRLFTRYRAVLDSGSSPRDQLRGCVIASFDAIDADPEAVAIYQAEARSLAHVERFAYIAD  124

Query  127  RNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQ  186
            R ++ R MW D+L +G+E G FR DLD+D+ YRF+RDT WV+VRWYRPGG LT+  V  Q
Sbjct  125  RLEEFRAMWRDILTRGVESGDFRNDLDIDVTYRFLRDTVWVAVRWYRPGGALTSDAVAAQ  184

Query  187  YLAIVLGGI  195
            YL I+  GI
Sbjct  185  YLGILERGI  193


>gi|311744275|ref|ZP_07718079.1| TetR family transcriptional regulator [Aeromicrobium marinum 
DSM 15272]
 gi|311312448|gb|EFQ82361.1| TetR family transcriptional regulator [Aeromicrobium marinum 
DSM 15272]
Length=199

 Score =  216 bits (549),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 102/183 (56%), Positives = 133/183 (73%), Gaps = 0/183 (0%)

Query  14   ELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARY  73
            ELL++AA +FA +G + TTVRDIAD AGILSGSLYHHF SKE MVDE+L  F + LF RY
Sbjct  16   ELLQIAAELFATQGFKNTTVRDIADAAGILSGSLYHHFDSKESMVDEILSTFQEELFGRY  75

Query  74   RDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQQRK  133
             +I+   A+P  +L+     SFEAI  H  +V I+Q+EA  L +  RFSY+ +RN+Q R+
Sbjct  76   AEILAGDADPRAKLEAAVRVSFEAIHQHRNEVAIFQNEADHLGTFERFSYLAERNQQSRE  135

Query  134  MWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAIVLG  193
            +W+ +L +GI  G  RPDLDV+LV+RFIRDT WV+VRWYRPGG  +   V  QY++I+L 
Sbjct  136  VWLTLLGEGIASGALRPDLDVELVHRFIRDTVWVAVRWYRPGGKRSHHDVADQYVSILLD  195

Query  194  GIT  196
            GIT
Sbjct  196  GIT  198


>gi|119716989|ref|YP_923954.1| regulatory protein TetR [Nocardioides sp. JS614]
 gi|119537650|gb|ABL82267.1| transcriptional regulator, TetR family [Nocardioides sp. JS614]
Length=210

 Score =  215 bits (547),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 99/189 (53%), Positives = 139/189 (74%), Gaps = 0/189 (0%)

Query  9    NSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDW  68
            ++RR +LL++AA +FAE+G + TTVRDIAD AGILSGSLYHHF SKE MVDE+LR F + 
Sbjct  21   HTRRAQLLQIAAGLFAEKGFKNTTVRDIADAAGILSGSLYHHFDSKESMVDEILRTFQEE  80

Query  69   LFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRN  128
            LF +Y DI+    +P  +L+   + SFEAI+ H  +V I+Q+EA  L +  RF+Y+ DRN
Sbjct  81   LFGQYDDILGGDLDPRAKLEQAVLVSFEAIDKHRDEVAIFQNEAAYLLTFDRFAYLADRN  140

Query  129  KQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYL  188
            +Q +++W+ +L  G++ G  R DLD++L YRFIRDT WV+V WYRPGG  T  ++ +QYL
Sbjct  141  RQSQQVWLTLLRTGVDAGVLRDDLDLELTYRFIRDTVWVAVSWYRPGGRRTHTEIARQYL  200

Query  189  AIVLGGITK  197
            +I+L GI +
Sbjct  201  SILLEGIAR  209


>gi|333918618|ref|YP_004492199.1| regulatory protein TetR [Amycolicicoccus subflavus DQS3-9A1]
 gi|333480839|gb|AEF39399.1| Regulatory protein, TetR [Amycolicicoccus subflavus DQS3-9A1]
Length=198

 Score =  209 bits (532),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 102/190 (54%), Positives = 131/190 (69%), Gaps = 0/190 (0%)

Query  9    NSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDW  68
              RRGELL LA  +FAERG ++TTVRDIA+ AGILSGSLYHHF SKE MVDE++R F D 
Sbjct  9    TGRRGELLTLACHLFAERGFQSTTVRDIAEAAGILSGSLYHHFDSKESMVDEIIRSFQDE  68

Query  69   LFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRN  128
            LFA Y  I+     P E+L  +   SFEAI  H   V IYQ E++ L    RFSY+ +RN
Sbjct  69   LFAEYDAIMARDLGPREKLAAVITTSFEAIHDHRDAVAIYQHESKYLQQFERFSYLIERN  128

Query  129  KQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYL  188
            KQ R +   +L++G+  G FR DLDV++ YRFIRD+ WV+V WY P G L A ++ ++YL
Sbjct  129  KQFRDILTSLLSEGVTAGAFRADLDVEVTYRFIRDSVWVAVAWYAPEGGLKASEIAERYL  188

Query  189  AIVLGGITKE  198
             IVL GI+++
Sbjct  189  GIVLDGISRK  198


>gi|256390569|ref|YP_003112133.1| TetR family transcriptional regulator [Catenulispora acidiphila 
DSM 44928]
 gi|256356795|gb|ACU70292.1| transcriptional regulator, TetR family [Catenulispora acidiphila 
DSM 44928]
Length=197

 Score =  201 bits (512),  Expect = 4e-50, Method: Compositional matrix adjust.
 Identities = 93/170 (55%), Positives = 123/170 (73%), Gaps = 0/170 (0%)

Query  26   RGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDIVDSTANPLE  85
            RG + TTVRDIAD AGILSGSLYHHF SKE M DE+LR FLD LF  YR IV+  ++P  
Sbjct  24   RGYKNTTVRDIADAAGILSGSLYHHFDSKETMADEILRTFLDELFRDYRAIVERQSDPRR  83

Query  86   RLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQQRKMWVDVLNQGIEE  145
              + L  ASF+AI+  HA + +YQ+EA++L   PRF+Y++D +++ R++W+  L +GI  
Sbjct  84   AFEQLVDASFQAIDRSHAAIALYQNEAKQLRQSPRFAYLDDTDREFREIWLGTLEKGIAS  143

Query  146  GYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAIVLGGI  195
            G FR DLD  + YRF+RDT WV+VRWY PGG LTA+ V  QYL+++L G 
Sbjct  144  GAFRADLDATMAYRFVRDTVWVAVRWYTPGGKLTAEAVSAQYLSMILEGF  193


>gi|337769596|emb|CCB78309.1| TetR-family transcriptional regulator [Streptomyces cattleya 
NRRL 8057]
Length=228

 Score =  197 bits (500),  Expect = 9e-49, Method: Compositional matrix adjust.
 Identities = 97/196 (50%), Positives = 132/196 (68%), Gaps = 3/196 (1%)

Query  3    RVAGQVNS---RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVD  59
            R  G VN+   RRGELL +AA +FA +G  ATTVR+IAD AG+L+GSLY+HF SKE M+D
Sbjct  30   RRKGAVNAAPRRRGELLAVAAEVFAAQGYDATTVREIADAAGLLAGSLYYHFDSKESMLD  89

Query  60   ELLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQP  119
            E+L  FL  L+A Y  ++ +   P E ++ L   SF  I+ H A V IYQ E++RL  QP
Sbjct  90   EILSTFLGELWAGYDAVLAAGLGPRETIEALVTESFREIDRHRAAVAIYQKESRRLTDQP  149

Query  120  RFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLT  179
            RF Y+ D  ++  + W+  L +G+  G FR DLDV L YRF+RDT WV+  WYRPGG  +
Sbjct  150  RFGYLADSQRRFEQAWLGTLERGVTAGVFRADLDVRLTYRFVRDTVWVAASWYRPGGQHS  209

Query  180  AQQVGQQYLAIVLGGI  195
             +++ +QYL++VL GI
Sbjct  210  PEEIARQYLSMVLDGI  225


>gi|345011419|ref|YP_004813773.1| TetR family transcriptional regulator [Streptomyces violaceusniger 
Tu 4113]
 gi|344037768|gb|AEM83493.1| transcriptional regulator, TetR family [Streptomyces violaceusniger 
Tu 4113]
Length=223

 Score =  196 bits (497),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 128/186 (69%), Gaps = 0/186 (0%)

Query  11   RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLF  70
            RR ELL  AA +FA +G  ATTVR IAD AG+L+GSLY+HF SKE MVDE+L  FLD L+
Sbjct  30   RRRELLSTAAEVFAAQGYNATTVRRIADEAGMLAGSLYYHFDSKESMVDEILSTFLDELW  89

Query  71   ARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQ  130
            A Y  ++ +   P E ++ L   SF  I+ H A V IYQ E++ L++QPRF Y+ +  ++
Sbjct  90   AGYEAVLGAGLGPRETVEALVTESFREIDRHRAAVAIYQKESRHLSAQPRFGYLTESQRR  149

Query  131  QRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAI  190
              + W+  L +G+ EG FR DLD+ L YRF+RDT WV+  WYRPGG  + +++ +QYL++
Sbjct  150  FERAWLGALERGVAEGVFRADLDIRLAYRFLRDTVWVAASWYRPGGQHSPEEIARQYLSM  209

Query  191  VLGGIT  196
            VL GIT
Sbjct  210  VLDGIT  215


>gi|291443923|ref|ZP_06583313.1| TetR-family transcriptional regulator [Streptomyces roseosporus 
NRRL 15998]
 gi|291346870|gb|EFE73774.1| TetR-family transcriptional regulator [Streptomyces roseosporus 
NRRL 15998]
Length=203

 Score =  193 bits (491),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 92/185 (50%), Positives = 126/185 (69%), Gaps = 0/185 (0%)

Query  11   RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLF  70
            RR ELL  AA +FA +G  ATTVR IAD AG+L+GSLY+HF SKE M+DE+L  FLD L+
Sbjct  15   RRRELLATAAEVFAAQGYNATTVRRIADEAGMLAGSLYYHFDSKESMIDEILSTFLDELW  74

Query  71   ARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQ  130
              Y +++ +   P E ++ L   SF  I+ H   V IYQ E++ LA+QPRF+Y+ D   +
Sbjct  75   QGYDEVLAAGLGPRETIEALVTESFREIDRHRPAVAIYQKESRHLATQPRFAYLADSQTK  134

Query  131  QRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAI  190
              K W+  L +G+ EG FR DLD+ L YRF+RDT WV+  WYRPGG  + +++ +QYL++
Sbjct  135  FEKAWLGTLERGVTEGVFRDDLDIRLTYRFVRDTVWVAASWYRPGGHHSPEEIARQYLSM  194

Query  191  VLGGI  195
            VL GI
Sbjct  195  VLDGI  199


>gi|297155145|gb|ADI04857.1| TetR family transcriptional regulator [Streptomyces bingchenggensis 
BCW-1]
Length=207

 Score =  193 bits (490),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 126/186 (68%), Gaps = 0/186 (0%)

Query  11   RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLF  70
            RR ELL  AA +FA  G  ATTVR IAD AG+L+GSLY+HF SKE MVDE+L  FLD L+
Sbjct  19   RRRELLSTAAEVFAAHGYNATTVRRIADEAGMLAGSLYYHFDSKEAMVDEILSTFLDELW  78

Query  71   ARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQ  130
            A Y  ++ +   P E ++ L   SF  I+ H A V IYQ E++ L++QPRF Y+    ++
Sbjct  79   AGYEAVLAAGLGPRETIEALVTESFREIDRHRAAVAIYQKESRHLSTQPRFGYLTVSQRK  138

Query  131  QRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAI  190
              + W+  L +G+ EG FR DLD+ L YRF+RDT WV+  WYRPGG  + +++ +QYL++
Sbjct  139  FEEAWLGTLERGVTEGVFRADLDIRLAYRFLRDTVWVAASWYRPGGQHSPEEIARQYLSM  198

Query  191  VLGGIT  196
            VL GIT
Sbjct  199  VLDGIT  204


>gi|239986975|ref|ZP_04707639.1| TetR family transcriptional regulator [Streptomyces roseosporus 
NRRL 11379]
Length=195

 Score =  193 bits (490),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 92/185 (50%), Positives = 126/185 (69%), Gaps = 0/185 (0%)

Query  11   RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLF  70
            RR ELL  AA +FA +G  ATTVR IAD AG+L+GSLY+HF SKE M+DE+L  FLD L+
Sbjct  7    RRRELLATAAEVFAAQGYNATTVRRIADEAGMLAGSLYYHFDSKESMIDEILSTFLDELW  66

Query  71   ARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQ  130
              Y +++ +   P E ++ L   SF  I+ H   V IYQ E++ LA+QPRF+Y+ D   +
Sbjct  67   QGYDEVLAAGLGPRETIEALVTESFREIDRHRPAVAIYQKESRHLATQPRFAYLADSQTK  126

Query  131  QRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAI  190
              K W+  L +G+ EG FR DLD+ L YRF+RDT WV+  WYRPGG  + +++ +QYL++
Sbjct  127  FEKAWLGTLERGVTEGVFRDDLDIRLTYRFVRDTVWVAASWYRPGGHHSPEEIARQYLSM  186

Query  191  VLGGI  195
            VL GI
Sbjct  187  VLDGI  191


>gi|302539964|ref|ZP_07292306.1| TetR family transcriptional regulator [Streptomyces hygroscopicus 
ATCC 53653]
 gi|302457582|gb|EFL20675.1| TetR family transcriptional regulator [Streptomyces himastatinicus 
ATCC 53653]
Length=207

 Score =  192 bits (489),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 128/186 (69%), Gaps = 0/186 (0%)

Query  11   RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLF  70
            RR ELL  AA +FA +G  ATTVR IAD AG+L+GSLY+HF SKE MVDE+L  FLD L+
Sbjct  19   RRRELLSTAAEVFAAQGYNATTVRRIADEAGMLAGSLYYHFDSKESMVDEILSTFLDELW  78

Query  71   ARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQ  130
            A Y +++ +   P E ++ L   SF  I+ H A V IYQ E+++LA+ PRF Y+ D  ++
Sbjct  79   AGYDEVLRAGLGPRETIEALVTESFREIDRHRAAVAIYQKESRQLAALPRFGYLTDSQRR  138

Query  131  QRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAI  190
                W+  L +G+ +G FR DLD  L YRF+RDT WV+  WYRPGG  +A+++ +QY+++
Sbjct  139  FEGAWLGTLERGVADGVFRADLDTRLAYRFLRDTVWVAASWYRPGGQHSAEEIARQYVSM  198

Query  191  VLGGIT  196
            VL GIT
Sbjct  199  VLDGIT  204


>gi|302549245|ref|ZP_07301587.1| TetR-family transcriptional regulator [Streptomyces viridochromogenes 
DSM 40736]
 gi|302466863|gb|EFL29956.1| TetR-family transcriptional regulator [Streptomyces viridochromogenes 
DSM 40736]
Length=209

 Score =  191 bits (486),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 95/196 (49%), Positives = 130/196 (67%), Gaps = 2/196 (1%)

Query  2    DRVAGQVNS--RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVD  59
            DR    V+   RR ELL +AA +FA +G  ATTVR IAD AG+L+GSLY+HF SKE M+D
Sbjct  9    DRKKSSVSPPERREELLAIAARVFAAQGYNATTVRKIADAAGMLAGSLYYHFDSKESMLD  68

Query  60   ELLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQP  119
            E+L GFLD L+ARY  ++ +   P E L+ L   SF  I+ H   V IYQ E++ L +QP
Sbjct  69   EILSGFLDELWARYDAVLCAGLGPRETLEALVTESFREIDRHLDAVAIYQKESRHLGTQP  128

Query  120  RFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLT  179
             F+Y+ +  ++  K W+  L +G+    FR DLDV L YRF+RDT WV+  WYRPGG  +
Sbjct  129  HFAYLVESQQKFEKAWLGTLERGVSAKVFRADLDVRLTYRFLRDTVWVAASWYRPGGRHS  188

Query  180  AQQVGQQYLAIVLGGI  195
             +++ +QYL++VL GI
Sbjct  189  PEEIARQYLSMVLEGI  204


>gi|302533881|ref|ZP_07286223.1| TetR-family transcriptional regulator [Streptomyces sp. C]
 gi|302442776|gb|EFL14592.1| TetR-family transcriptional regulator [Streptomyces sp. C]
Length=205

 Score =  191 bits (485),  Expect = 5e-47, Method: Compositional matrix adjust.
 Identities = 91/185 (50%), Positives = 125/185 (68%), Gaps = 0/185 (0%)

Query  11   RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLF  70
            RR ELL+ AA +FA +G  ATTVR IAD AG+L+GSLY+HF SKE M+DE+L  FL+ L+
Sbjct  17   RRRELLDTAAEVFAAQGYNATTVRKIADAAGMLAGSLYYHFDSKESMLDEILSAFLNELW  76

Query  71   ARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQ  130
            A Y  ++ +   P E ++ L   SF  I+ H A V IYQ EA+ L++QPRF Y+ D   +
Sbjct  77   AGYDTVLAAGLGPRETIEALVTESFREIDRHRAAVAIYQKEARTLSAQPRFHYLSDSQVK  136

Query  131  QRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAI  190
              K W+  L +G+    FR DLD+ L YRF+RDT WV+  WYRPGG  + +++ +QYL++
Sbjct  137  FEKAWLGTLERGVAAQVFRADLDIRLTYRFVRDTVWVAASWYRPGGQHSPEEIARQYLSM  196

Query  191  VLGGI  195
            VL GI
Sbjct  197  VLDGI  201


>gi|326779938|ref|ZP_08239203.1| transcriptional regulator, TetR family [Streptomyces cf. griseus 
XylebKG-1]
 gi|326660271|gb|EGE45117.1| transcriptional regulator, TetR family [Streptomyces griseus 
XylebKG-1]
Length=203

 Score =  191 bits (485),  Expect = 6e-47, Method: Compositional matrix adjust.
 Identities = 91/185 (50%), Positives = 124/185 (68%), Gaps = 0/185 (0%)

Query  11   RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLF  70
            RR ELL  AA +FA  G  ATTVR IAD AG+L+GSLY+HF SKE M+DE+L  FLD L+
Sbjct  15   RRQELLATAAEVFAAHGYNATTVRRIADEAGMLAGSLYYHFDSKESMIDEILSTFLDELW  74

Query  71   ARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQ  130
              Y  ++ +   P E ++ L   SF  I+ H   V IYQ E++ LA+QPRF+Y+ D   +
Sbjct  75   QGYDTVLAARLGPRETIEALVTESFREIDRHRPAVAIYQKESKHLATQPRFAYLADSQTK  134

Query  131  QRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAI  190
              + W+  L +G+ EG FR DLD+ L YRF+RDT WV+  WYRPGG  + +++ +QYL++
Sbjct  135  FEEAWLGTLERGVAEGAFRDDLDIRLTYRFVRDTVWVAASWYRPGGHHSPEEIARQYLSM  194

Query  191  VLGGI  195
            VL GI
Sbjct  195  VLDGI  199


>gi|182439286|ref|YP_001827005.1| TetR family transcriptional regulator [Streptomyces griseus subsp. 
griseus NBRC 13350]
 gi|178467802|dbj|BAG22322.1| putative TetR-family transcriptional regulator [Streptomyces 
griseus subsp. griseus NBRC 13350]
Length=195

 Score =  191 bits (484),  Expect = 7e-47, Method: Compositional matrix adjust.
 Identities = 91/185 (50%), Positives = 124/185 (68%), Gaps = 0/185 (0%)

Query  11   RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLF  70
            RR ELL  AA +FA  G  ATTVR IAD AG+L+GSLY+HF SKE M+DE+L  FLD L+
Sbjct  7    RRQELLATAAEVFAAHGYNATTVRRIADEAGMLAGSLYYHFDSKESMIDEILSTFLDELW  66

Query  71   ARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQ  130
              Y  ++ +   P E ++ L   SF  I+ H   V IYQ E++ LA+QPRF+Y+ D   +
Sbjct  67   QGYDTVLAARLGPRETIEALVTESFREIDRHRPAVAIYQKESKHLATQPRFAYLADSQTK  126

Query  131  QRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAI  190
              + W+  L +G+ EG FR DLD+ L YRF+RDT WV+  WYRPGG  + +++ +QYL++
Sbjct  127  FEEAWLGTLERGVAEGAFRDDLDIRLTYRFVRDTVWVAASWYRPGGHHSPEEIARQYLSM  186

Query  191  VLGGI  195
            VL GI
Sbjct  187  VLDGI  191


>gi|297198997|ref|ZP_06916394.1| TetR family transcriptional regulator [Streptomyces sviceus ATCC 
29083]
 gi|197711081|gb|EDY55115.1| TetR family transcriptional regulator [Streptomyces sviceus ATCC 
29083]
Length=204

 Score =  190 bits (483),  Expect = 9e-47, Method: Compositional matrix adjust.
 Identities = 91/193 (48%), Positives = 131/193 (68%), Gaps = 0/193 (0%)

Query  3    RVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELL  62
            +V+    +RR ELL+ AA +FAE+G  ATTVR IAD AG+L+GSLY+HF SKE M++E+L
Sbjct  8    QVSAAAPARRRELLDTAAEVFAEQGYNATTVRKIADHAGMLAGSLYYHFDSKESMLEEIL  67

Query  63   RGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFS  122
            R FLD L+  Y  ++ +   P E L+ L   SF  I+ H A V IYQ E+++L +Q RF+
Sbjct  68   RTFLDELWDGYDTVLGAELGPRETLEALVTESFREIDRHRAAVAIYQKESKQLVAQERFA  127

Query  123  YIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQ  182
            ++ +  ++  K W+  L +G+    FR DLDV L YRF+RDT WV+  WYRPGG  + ++
Sbjct  128  FLAESQRRFEKAWLSTLERGVAAEVFRADLDVRLTYRFVRDTVWVAASWYRPGGQHSPEE  187

Query  183  VGQQYLAIVLGGI  195
            + +QYL++VL GI
Sbjct  188  IARQYLSMVLDGI  200


>gi|297194955|ref|ZP_06912353.1| TetR-family transcriptional regulator [Streptomyces pristinaespiralis 
ATCC 25486]
 gi|297152557|gb|EFH31843.1| TetR-family transcriptional regulator [Streptomyces pristinaespiralis 
ATCC 25486]
Length=204

 Score =  190 bits (482),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 94/193 (49%), Positives = 126/193 (66%), Gaps = 0/193 (0%)

Query  3    RVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELL  62
            +V+     RR ELL  AA +FA +G  ATTVR IAD AG+L+GSLY+HF SKE M+DE+L
Sbjct  8    QVSAAPPERRRELLATAAEVFAAQGYNATTVRKIADAAGMLAGSLYYHFDSKESMLDEIL  67

Query  63   RGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFS  122
              FLD L+A Y  ++ +   P E ++ L   SF  I+ H   V IYQ E++ LA QPRF 
Sbjct  68   STFLDELWAGYDTVLAAGLGPRETIEALVTESFREIDRHRDAVAIYQKESRHLAVQPRFR  127

Query  123  YIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQ  182
            Y+ D   +  K W+  L +G+ E  FR DLDV L YRF+RDT WV+  WYRPGG  + ++
Sbjct  128  YLADSQVKFEKAWLGTLERGVAEQAFRADLDVRLTYRFVRDTVWVAASWYRPGGLHSPEE  187

Query  183  VGQQYLAIVLGGI  195
            + +QYL++VL GI
Sbjct  188  IARQYLSMVLDGI  200


>gi|326328935|ref|ZP_08195266.1| transcriptional regulator, TetR family [Nocardioidaceae bacterium 
Broad-1]
 gi|325953278|gb|EGD45287.1| transcriptional regulator, TetR family [Nocardioidaceae bacterium 
Broad-1]
Length=205

 Score =  188 bits (478),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 93/187 (50%), Positives = 120/187 (65%), Gaps = 0/187 (0%)

Query  9    NSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDW  68
            +SRR ELL LAA MFA +G   TTVRDIAD AGILSGSLYHHF SKE M+ E+L GFLD 
Sbjct  17   SSRRAELLTLAAEMFATKGFSQTTVRDIADAAGILSGSLYHHFRSKEAMLTEVLSGFLDG  76

Query  69   LFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRN  128
            L AR+ +IV+S  +P   L GL   SF  I +    V +YQ+EA  LA+   F ++ +R+
Sbjct  77   LNARFTEIVESGVDPQADLDGLIAESFRTIHNERLAVALYQNEASFLATVEGFEFVAERS  136

Query  129  KQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYL  188
            +    +W+ V+  G   G F+  LD  L YRFIRD  W +V WYRPGG  T + + +QYL
Sbjct  137  RDNEALWIRVIEAGQASGVFQASLDPALTYRFIRDGVWSTVSWYRPGGRHTPETLSEQYL  196

Query  189  AIVLGGI  195
             ++  GI
Sbjct  197  KLLHAGI  203


>gi|29832740|ref|NP_827374.1| TetR family transcriptional regulator [Streptomyces avermitilis 
MA-4680]
 gi|29609860|dbj|BAC73909.1| putative TetR-family transcriptional regulator [Streptomyces 
avermitilis MA-4680]
Length=204

 Score =  188 bits (477),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 90/185 (49%), Positives = 127/185 (69%), Gaps = 0/185 (0%)

Query  11   RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLF  70
            RR ELL+ AA +FAE+G  ATTVR IAD AG+L+GSLY+HF SKE M++E+LR FLD L+
Sbjct  7    RRRELLDTAAEVFAEQGYNATTVRKIADHAGMLAGSLYYHFDSKESMLEEILRTFLDELW  66

Query  71   ARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQ  130
              Y  ++D+   P E L+ L   SF  I+ H A V IYQ E+++L +Q RF+++ +  ++
Sbjct  67   DGYDTVLDAELGPRETLEALVTESFREIDRHRAAVAIYQKESRQLVAQERFAFLAESQRR  126

Query  131  QRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAI  190
              K W+  L +G+    FR DLD+ L YRF+RDT WV+  WYRPGG    +++ +QYL++
Sbjct  127  FEKAWLATLERGVAAEVFRADLDIRLTYRFVRDTVWVAASWYRPGGQHRPEEIARQYLSM  186

Query  191  VLGGI  195
            VL GI
Sbjct  187  VLDGI  191


>gi|254387118|ref|ZP_05002391.1| TetR-family transcriptional regulator [Streptomyces sp. Mg1]
 gi|194345936|gb|EDX26902.1| TetR-family transcriptional regulator [Streptomyces sp. Mg1]
Length=204

 Score =  188 bits (477),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 90/189 (48%), Positives = 124/189 (66%), Gaps = 0/189 (0%)

Query  11   RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLF  70
            RR ELL  AA +FA +G  ATTVR IAD AG+L+GSLY+HF SKE M+DE+L  FL  L+
Sbjct  16   RRRELLGTAAEVFAAQGYNATTVRKIADAAGMLAGSLYYHFDSKESMLDEILSAFLTELW  75

Query  71   ARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQ  130
              Y  ++ +   P E ++ L   SF  I+ H A V IYQ E++ L++QPRF Y+ D  ++
Sbjct  76   EGYDTVLAAGLGPRETIEALVTESFREIDRHRAAVAIYQKESRHLSAQPRFRYLSDSQQK  135

Query  131  QRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYLAI  190
              K W+  L +G+    FR DLD+ L YRF+RDT WV+  WYRPGG  + +++ +QYL++
Sbjct  136  FEKAWLGTLERGVAARVFRADLDIRLTYRFVRDTVWVAASWYRPGGQHSPEEIARQYLSM  195

Query  191  VLGGITKEG  199
            VL GI   G
Sbjct  196  VLDGIAVRG  204


>gi|312195765|ref|YP_004015826.1| TetR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227101|gb|ADP79956.1| regulatory protein TetR [Frankia sp. EuI1c]
Length=253

 Score =  186 bits (473),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 89/187 (48%), Positives = 119/187 (64%), Gaps = 0/187 (0%)

Query  9    NSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDW  68
            + RR  ++E+AA +FA+RG RATTVR+IAD AG+LSGSLYHHF SKE ++DELL  FL  
Sbjct  62   SERRAAIVEIAAGLFAQRGYRATTVREIADAAGLLSGSLYHHFDSKESIIDELLSSFLTE  121

Query  69   LFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRN  128
            L A Y  I    A P + +  L  ++F AI  H A V ++Q+E   LA+ PRF Y+    
Sbjct  122  LQAEYAAIAAVPARPTDTIAALVRSAFAAIARHRAAVTVFQNERGYLATLPRFGYLRTSE  181

Query  129  KQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPLTAQQVGQQYL  188
            +  +++W+D L  GI  G  R DLD  L +RF+RD  WVSV WYRP G L   ++ + +L
Sbjct  182  EASQRLWLDALRAGIAAGELRADLDPKLTHRFLRDAIWVSVHWYRPDGRLAPDELAEHFL  241

Query  189  AIVLGGI  195
            A V  GI
Sbjct  242  ATVFDGI  248


>gi|328881713|emb|CCA54952.1| Transcriptional factor in putative operon for degradation of 
branched-chain alkanes, nitroalkanes and may be also cyclic 
ketones, alkenoic acids [Streptomyces venezuelae ATCC 10712]
Length=206

 Score =  186 bits (472),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 93/197 (48%), Positives = 127/197 (65%), Gaps = 3/197 (1%)

Query  2    DRVAGQVNS---RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMV  58
            D+   QV+    RR ELL+ AA +FA +G  ATTVR IAD AG+L+GSLY+HF SKE M+
Sbjct  6    DKKKTQVSGGPERRRELLDTAAEVFAAQGYNATTVRKIADAAGMLAGSLYYHFDSKESML  65

Query  59   DELLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQ  118
            DE+L  FL  L+  Y  ++ +   P E ++ L   SF  I+ H A V IYQ E++ L   
Sbjct  66   DEILSTFLGELWEGYDAVLAAGRGPRETIEALVTESFREIDRHRAAVAIYQKESRHLTDL  125

Query  119  PRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFIRDTTWVSVRWYRPGGPL  178
            PRF Y+ D  ++  K W+  L +G+  G FR DLDV L YRF+RDT WV+  WYRPGG  
Sbjct  126  PRFHYLADSQRKFEKAWLGTLERGVAAGVFRADLDVRLTYRFVRDTVWVAASWYRPGGLH  185

Query  179  TAQQVGQQYLAIVLGGI  195
            + +++ +QYL++VL GI
Sbjct  186  SPEEIARQYLSMVLDGI  202



Lambda     K      H
   0.323    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 218250040016


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40