BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3566A Length=88 Score E Sequences producing significant alignments: (Bits) Value gi|15843178|ref|NP_338215.1| hypothetical protein MT3671.1 [Myco... 180 5e-44 gi|289445159|ref|ZP_06434903.1| arylamine n-acetyltransferase na... 177 3e-43 gi|260819407|ref|XP_002605028.1| hypothetical protein BRAFLDRAFT... 35.0 3.7 gi|126724780|ref|ZP_01740623.1| penicillin-binding protein 2 [Rh... 34.7 5.3 >gi|15843178|ref|NP_338215.1| hypothetical protein MT3671.1 [Mycobacterium tuberculosis CDC1551] gi|31794743|ref|NP_857236.1| hypothetical protein Mb3597c [Mycobacterium bovis AF2122/97] gi|57117126|ref|YP_177990.1| hypothetical protein Rv3566A [Mycobacterium tuberculosis H37Rv] 31 more sequence titlesLength=88 Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 87/88 (99%), Positives = 88/88 (100%), Gaps = 0/88 (0%) Query 1 VSGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIV 60 +SGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIV Sbjct 1 MSGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIV 60 Query 61 GRLRDERPNTLRSVRRGDEVRMATWHWI 88 GRLRDERPNTLRSVRRGDEVRMATWHWI Sbjct 61 GRLRDERPNTLRSVRRGDEVRMATWHWI 88 >gi|289445159|ref|ZP_06434903.1| arylamine n-acetyltransferase nat [Mycobacterium tuberculosis CPHL_A] gi|289418117|gb|EFD15318.1| arylamine n-acetyltransferase nat [Mycobacterium tuberculosis CPHL_A] Length=88 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 86/88 (98%), Positives = 87/88 (99%), Gaps = 0/88 (0%) Query 1 VSGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIV 60 +SGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIV Sbjct 1 MSGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIV 60 Query 61 GRLRDERPNTLRSVRRGDEVRMATWHWI 88 RLRDERPNTLRSVRRGDEVRMATWHWI Sbjct 61 DRLRDERPNTLRSVRRGDEVRMATWHWI 88 >gi|260819407|ref|XP_002605028.1| hypothetical protein BRAFLDRAFT_85170 [Branchiostoma floridae] gi|229290358|gb|EEN61038.1| hypothetical protein BRAFLDRAFT_85170 [Branchiostoma floridae] Length=1491 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 19/63 (31%), Positives = 36/63 (58%), Gaps = 2/63 (3%) Query 10 RAFGQMARAATGWVSV-SGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIVGRLRDERP 68 + FG M + SV + + + A + + +++D +TH A++ CD++GRLRD RP Sbjct 379 KVFGAMIEQGANYKSVLATRGSTARELIKEALERYSIDRDTH-ADYVLCDVIGRLRDPRP 437 Query 69 NTL 71 + + Sbjct 438 DEI 440 >gi|126724780|ref|ZP_01740623.1| penicillin-binding protein 2 [Rhodobacterales bacterium HTCC2150] gi|126705944|gb|EBA05034.1| penicillin-binding protein 2 [Rhodobacterales bacterium HTCC2150] Length=619 Score = 34.7 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 22/66 (34%), Positives = 27/66 (41%), Gaps = 8/66 (12%) Query 1 VSGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHV---ANHNRC 57 V G PP G + T ++ G FA AADT RC G D H H + Sbjct 291 VQGTYPP-----GSTVKMVTALAALEGDFADAADTVRCNGYTEVADRNFHCWKRGGHGKV 345 Query 58 DIVGRL 63 D+V L Sbjct 346 DLVSSL 351 Lambda K H 0.323 0.133 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130095868320 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40