BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3566A

Length=88
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15843178|ref|NP_338215.1|  hypothetical protein MT3671.1 [Myco...   180    5e-44
gi|289445159|ref|ZP_06434903.1|  arylamine n-acetyltransferase na...   177    3e-43
gi|260819407|ref|XP_002605028.1|  hypothetical protein BRAFLDRAFT...  35.0    3.7  
gi|126724780|ref|ZP_01740623.1|  penicillin-binding protein 2 [Rh...  34.7    5.3  


>gi|15843178|ref|NP_338215.1| hypothetical protein MT3671.1 [Mycobacterium tuberculosis CDC1551]
 gi|31794743|ref|NP_857236.1| hypothetical protein Mb3597c [Mycobacterium bovis AF2122/97]
 gi|57117126|ref|YP_177990.1| hypothetical protein Rv3566A [Mycobacterium tuberculosis H37Rv]
 31 more sequence titles
 Length=88

 Score =  180 bits (457),  Expect = 5e-44, Method: Compositional matrix adjust.
 Identities = 87/88 (99%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   VSGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIV  60
           +SGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIV
Sbjct  1   MSGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIV  60

Query  61  GRLRDERPNTLRSVRRGDEVRMATWHWI  88
           GRLRDERPNTLRSVRRGDEVRMATWHWI
Sbjct  61  GRLRDERPNTLRSVRRGDEVRMATWHWI  88


>gi|289445159|ref|ZP_06434903.1| arylamine n-acetyltransferase nat [Mycobacterium tuberculosis 
CPHL_A]
 gi|289418117|gb|EFD15318.1| arylamine n-acetyltransferase nat [Mycobacterium tuberculosis 
CPHL_A]
Length=88

 Score =  177 bits (450),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 86/88 (98%), Positives = 87/88 (99%), Gaps = 0/88 (0%)

Query  1   VSGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIV  60
           +SGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIV
Sbjct  1   MSGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIV  60

Query  61  GRLRDERPNTLRSVRRGDEVRMATWHWI  88
            RLRDERPNTLRSVRRGDEVRMATWHWI
Sbjct  61  DRLRDERPNTLRSVRRGDEVRMATWHWI  88


>gi|260819407|ref|XP_002605028.1| hypothetical protein BRAFLDRAFT_85170 [Branchiostoma floridae]
 gi|229290358|gb|EEN61038.1| hypothetical protein BRAFLDRAFT_85170 [Branchiostoma floridae]
Length=1491

 Score = 35.0 bits (79),  Expect = 3.7, Method: Composition-based stats.
 Identities = 19/63 (31%), Positives = 36/63 (58%), Gaps = 2/63 (3%)

Query  10   RAFGQMARAATGWVSV-SGQFAVAADTCRCEGTLFAVDPETHVANHNRCDIVGRLRDERP  68
            + FG M      + SV + + + A +  +     +++D +TH A++  CD++GRLRD RP
Sbjct  379  KVFGAMIEQGANYKSVLATRGSTARELIKEALERYSIDRDTH-ADYVLCDVIGRLRDPRP  437

Query  69   NTL  71
            + +
Sbjct  438  DEI  440


>gi|126724780|ref|ZP_01740623.1| penicillin-binding protein 2 [Rhodobacterales bacterium HTCC2150]
 gi|126705944|gb|EBA05034.1| penicillin-binding protein 2 [Rhodobacterales bacterium HTCC2150]
Length=619

 Score = 34.7 bits (78),  Expect = 5.3, Method: Composition-based stats.
 Identities = 22/66 (34%), Positives = 27/66 (41%), Gaps = 8/66 (12%)

Query  1    VSGADPPTRRAFGQMARAATGWVSVSGQFAVAADTCRCEGTLFAVDPETHV---ANHNRC  57
            V G  PP     G   +  T   ++ G FA AADT RC G     D   H      H + 
Sbjct  291  VQGTYPP-----GSTVKMVTALAALEGDFADAADTVRCNGYTEVADRNFHCWKRGGHGKV  345

Query  58   DIVGRL  63
            D+V  L
Sbjct  346  DLVSSL  351



Lambda     K      H
   0.323    0.133    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130095868320


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40