BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3575c Length=359 Score E Sequences producing significant alignments: (Bits) Value gi|289555839|ref|ZP_06445049.1| transcriptional regulator, laci-... 709 0.0 gi|15843188|ref|NP_338225.1| LacI family transcription regulator... 708 0.0 gi|15610711|ref|NP_218092.1| transcriptional regulatory protein ... 706 0.0 gi|341603516|emb|CCC66197.1| Transcriptional regulatory protein ... 704 0.0 gi|308369164|ref|ZP_07416796.2| transcriptional regulator, laci-... 671 0.0 gi|183985038|ref|YP_001853329.1| PurR family transcriptional reg... 652 0.0 gi|118619325|ref|YP_907657.1| PurR family transcriptional regula... 648 0.0 gi|41406588|ref|NP_959424.1| hypothetical protein MAP0490 [Mycob... 646 0.0 gi|118462693|ref|YP_879864.1| LacI family transcriptional regula... 642 0.0 gi|254773542|ref|ZP_05215058.1| hypothetical protein MaviaA2_025... 640 0.0 gi|342862407|ref|ZP_08719047.1| hypothetical protein MCOL_26068 ... 638 0.0 gi|254822723|ref|ZP_05227724.1| hypothetical protein MintA_22529... 638 0.0 gi|240169807|ref|ZP_04748466.1| PurR family transcriptional regu... 632 2e-179 gi|336458484|gb|EGO37457.1| transcriptional regulator [Mycobacte... 621 5e-176 gi|296166624|ref|ZP_06849052.1| LacI family transcriptional regu... 598 4e-169 gi|120406265|ref|YP_956094.1| periplasmic binding protein/LacI t... 560 1e-157 gi|145222049|ref|YP_001132727.1| periplasmic binding protein/Lac... 553 2e-155 gi|108801679|ref|YP_641876.1| LacI family transcriptional regula... 542 3e-152 gi|126437665|ref|YP_001073356.1| LacI family transcriptional reg... 536 3e-150 gi|118471149|ref|YP_890268.1| ligand-binding /sugar binding doma... 535 3e-150 gi|229494135|ref|ZP_04387898.1| transcriptional regulator, LacI ... 449 3e-124 gi|226304193|ref|YP_002764151.1| LacI family transcriptional reg... 448 6e-124 gi|111021452|ref|YP_704424.1| LacI family transcription regulato... 443 2e-122 gi|312138114|ref|YP_004005450.1| substrate-binding protein [Rhod... 442 3e-122 gi|226363818|ref|YP_002781600.1| LacI family transcriptional reg... 442 6e-122 gi|325674982|ref|ZP_08154669.1| LacI family transcriptional regu... 441 7e-122 gi|256374501|ref|YP_003098161.1| LacI family transcriptional reg... 363 2e-98 gi|257057484|ref|YP_003135316.1| transcriptional regulator, LacI... 352 7e-95 gi|302530745|ref|ZP_07283087.1| transcriptional regulatory prote... 347 1e-93 gi|325000171|ref|ZP_08121283.1| LacI family transcriptional regu... 347 3e-93 gi|134097068|ref|YP_001102729.1| LacI family transcriptional reg... 346 3e-93 gi|331699810|ref|YP_004336049.1| LacI family transcriptional reg... 333 2e-89 gi|333918328|ref|YP_004491909.1| LacI family transcriptional reg... 330 2e-88 gi|300790505|ref|YP_003770796.1| LacI family transcriptional reg... 329 5e-88 gi|291006991|ref|ZP_06564964.1| LacI family transcriptional regu... 318 7e-85 gi|258655026|ref|YP_003204182.1| LacI family transcriptional reg... 316 3e-84 gi|172041341|ref|YP_001801055.1| LacI family transcriptional reg... 311 2e-82 gi|340793485|ref|YP_004758948.1| LacI DNA-binding transcription ... 305 1e-80 gi|336324800|ref|YP_004604766.1| LacI DNA-binding transcription ... 304 2e-80 gi|68535394|ref|YP_250099.1| LacI family transcriptional regulat... 290 3e-76 gi|213965084|ref|ZP_03393282.1| transcriptional regulator, LacI ... 286 3e-75 gi|260578379|ref|ZP_05846293.1| LacI family transcriptional regu... 285 9e-75 gi|311740185|ref|ZP_07714017.1| LacI family transcriptional regu... 283 5e-74 gi|38234533|ref|NP_940300.1| LacI family transcriptional regulat... 282 5e-74 gi|145296626|ref|YP_001139447.1| hypothetical protein cgR_2534 [... 281 1e-73 gi|334564031|ref|ZP_08517022.1| LacI family transcriptional regu... 280 3e-73 gi|25029067|ref|NP_739121.1| putative regulatory protein [Coryne... 278 9e-73 gi|21325399|dbj|BAC00021.1| Transcriptional regulators [Coryneba... 278 1e-72 gi|19553826|ref|NP_601828.1| transcriptional regulator [Coryneba... 278 1e-72 gi|229597996|pdb|3H5T|A Chain A, Crystal Structure Of A Transcri... 278 1e-72 >gi|289555839|ref|ZP_06445049.1| transcriptional regulator, laci-family [Mycobacterium tuberculosis KZN 605] gi|289440471|gb|EFD22964.1| transcriptional regulator, laci-family [Mycobacterium tuberculosis KZN 605] gi|339296394|gb|AEJ48505.1| transcriptional regulator, laci-family [Mycobacterium tuberculosis CCDC5079] gi|339299995|gb|AEJ52105.1| transcriptional regulator, laci-family [Mycobacterium tuberculosis CCDC5180] Length=390 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/359 (100%), Positives = 359/359 (100%), Gaps = 0/359 (0%) Query 1 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR Sbjct 32 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 91 Query 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT Sbjct 92 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 151 Query 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA Sbjct 152 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 211 Query 181 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS Sbjct 212 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 271 Query 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT Sbjct 272 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 331 Query 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA Sbjct 332 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 390 >gi|15843188|ref|NP_338225.1| LacI family transcription regulator [Mycobacterium tuberculosis CDC1551] gi|148824781|ref|YP_001289535.1| LacI family transcriptional regulator [Mycobacterium tuberculosis F11] gi|253800616|ref|YP_003033617.1| transcriptional regulator, laci-family [Mycobacterium tuberculosis KZN 1435] 12 more sequence titles Length=404 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/359 (100%), Positives = 359/359 (100%), Gaps = 0/359 (0%) Query 1 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR Sbjct 46 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 105 Query 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT Sbjct 106 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 165 Query 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA Sbjct 166 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 225 Query 181 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS Sbjct 226 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 285 Query 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT Sbjct 286 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 345 Query 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA Sbjct 346 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 404 >gi|15610711|ref|NP_218092.1| transcriptional regulatory protein LacI-family [Mycobacterium tuberculosis H37Rv] gi|31794752|ref|NP_857245.1| transcriptional regulatory protein LacI-family [Mycobacterium bovis AF2122/97] gi|121639495|ref|YP_979719.1| LacI family transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] 39 more sequence titles Length=359 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/359 (99%), Positives = 359/359 (100%), Gaps = 0/359 (0%) Query 1 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 +SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR Sbjct 1 MSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 Query 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT Sbjct 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 Query 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA Sbjct 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 Query 181 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS Sbjct 181 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 Query 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT Sbjct 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 Query 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA Sbjct 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 >gi|341603516|emb|CCC66197.1| Transcriptional regulatory protein (probably lacI-family) [Mycobacterium bovis BCG str. Moreau RDJ] Length=359 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/359 (99%), Positives = 359/359 (100%), Gaps = 0/359 (0%) Query 1 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 +SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR Sbjct 1 MSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 Query 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT Sbjct 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 Query 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA Sbjct 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 Query 181 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 GYVLGLGHRE+GLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS Sbjct 181 GYVLGLGHREVGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 Query 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT Sbjct 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 Query 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA Sbjct 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 >gi|308369164|ref|ZP_07416796.2| transcriptional regulator, laci-family [Mycobacterium tuberculosis SUMu002] gi|308372587|ref|ZP_07429169.2| transcriptional regulator, laci-family [Mycobacterium tuberculosis SUMu004] gi|308372677|ref|ZP_07429473.2| transcriptional regulator, laci-family [Mycobacterium tuberculosis SUMu005] 18 more sequence titles Length=340 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/340 (99%), Positives = 340/340 (100%), Gaps = 0/340 (0%) Query 20 VSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTRKAGAVGLVMAEPLT 79 +SRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTRKAGAVGLVMAEPLT Sbjct 1 MSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTRKAGAVGLVMAEPLT 60 Query 80 YFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLGAGVDGFVVYSVGDD 139 YFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLGAGVDGFVVYSVGDD Sbjct 61 YFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLGAGVDGFVVYSVGDD 120 Query 140 DPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLGLGHRELGLLTMRLG 199 DPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLGLGHRELGLLTMRLG Sbjct 121 DPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLGLGHRELGLLTMRLG 180 Query 200 RDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVESYEHLPTSGGTAAK 259 RDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVESYEHLPTSGGTAAK Sbjct 181 RDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVESYEHLPTSGGTAAK 240 Query 260 VALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGVPEALSRGLTTVAQP 319 VALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGVPEALSRGLTTVAQP Sbjct 241 VALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGVPEALSRGLTTVAQP 300 Query 320 SLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 SLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA Sbjct 301 SLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 340 >gi|183985038|ref|YP_001853329.1| PurR family transcriptional regulator [Mycobacterium marinum M] gi|183178364|gb|ACC43474.1| transcriptional regulatory protein (purr family) [Mycobacterium marinum M] Length=359 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/359 (90%), Positives = 345/359 (97%), Gaps = 0/359 (0%) Query 1 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 +SPTPRRRATLASLAAELKVSR+T+SNAFNRPDQLSA+LRERVLATAKR+GY GPDPVAR Sbjct 1 MSPTPRRRATLASLAAELKVSRSTISNAFNRPDQLSAELRERVLATAKRMGYPGPDPVAR 60 Query 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFV GVAQSCEELGQGL LV+VG+SRSL DGT Sbjct 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVTGVAQSCEELGQGLLLVAVGASRSLEDGT 120 Query 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 AAVL AGVDGFVVYSV DDDPYLQVVLQRRLPVVVVDQPK+L+GVSRVGIDDRAAMR++A Sbjct 121 AAVLNAGVDGFVVYSVRDDDPYLQVVLQRRLPVVVVDQPKELAGVSRVGIDDRAAMRKIA 180 Query 181 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 YVLGLGHR++GLLTMRLGRDRRQDLVDAERL+SPTFDVQRERI GVWEAMTAAGVDP+S Sbjct 181 DYVLGLGHRQIGLLTMRLGRDRRQDLVDAERLKSPTFDVQRERITGVWEAMTAAGVDPES 240 Query 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 LTVVESYEHLPTSGG AAKVAL+ANPR+TALMCTADILALSAMDYLR HGIYVPGQMTVT Sbjct 241 LTVVESYEHLPTSGGDAAKVALEANPRITALMCTADILALSAMDYLRGHGIYVPGQMTVT 300 Query 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 GFDGVPEA+SRGLTTV+QPSL KG RAGELL PPRSGLPV+E+LDTEL+RGRTAGPPA Sbjct 301 GFDGVPEAISRGLTTVSQPSLQKGRRAGELLQNPPRSGLPVVELLDTELIRGRTAGPPA 359 >gi|118619325|ref|YP_907657.1| PurR family transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118571435|gb|ABL06186.1| transcriptional regulatory protein (PurR family) [Mycobacterium ulcerans Agy99] Length=359 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/359 (90%), Positives = 343/359 (96%), Gaps = 0/359 (0%) Query 1 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 +SPTPRRRATLASLAAELKVSR+T+SNAFNRPDQLS +LRERVLATAKR+GY GPDPVAR Sbjct 1 MSPTPRRRATLASLAAELKVSRSTISNAFNRPDQLSVELRERVLATAKRMGYPGPDPVAR 60 Query 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFV GVAQSCEELGQGL LV+VG+SRSL DGT Sbjct 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVTGVAQSCEELGQGLLLVAVGASRSLEDGT 120 Query 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 AAVL AGVDGFVVYSV DDDPYLQVVLQRRLPVVVVDQPK+L+GVSRVGIDDRAAMR++A Sbjct 121 AAVLNAGVDGFVVYSVRDDDPYLQVVLQRRLPVVVVDQPKELAGVSRVGIDDRAAMRKIA 180 Query 181 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 YVL LGHR++GLLTMRLGRDRRQDLVDAERL+SPTFDVQRERI GVWEAMTAAGVDP+S Sbjct 181 DYVLSLGHRQIGLLTMRLGRDRRQDLVDAERLKSPTFDVQRERITGVWEAMTAAGVDPES 240 Query 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 LTVVESYEHLPTSGG AAKVAL+ANPR+TALMCTADILALSAMDYLR HGIYVPGQMTVT Sbjct 241 LTVVESYEHLPTSGGDAAKVALEANPRITALMCTADILALSAMDYLRGHGIYVPGQMTVT 300 Query 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 GFDGVPEA+SRGLTTV+QPSL KG RAGELL PPRSGLPV+E+LDTEL+RGRTAGPPA Sbjct 301 GFDGVPEAISRGLTTVSQPSLQKGRRAGELLQNPPRSGLPVVELLDTELIRGRTAGPPA 359 >gi|41406588|ref|NP_959424.1| hypothetical protein MAP0490 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394937|gb|AAS02807.1| hypothetical protein MAP_0490 [Mycobacterium avium subsp. paratuberculosis K-10] Length=398 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/359 (91%), Positives = 339/359 (95%), Gaps = 0/359 (0%) Query 1 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 VSPTPRRRATLASLA ELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGY GPDPVAR Sbjct 40 VSPTPRRRATLASLADELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYPGPDPVAR 99 Query 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFV GVAQSCE LGQGL LV+VG SRSL +GT Sbjct 100 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVTGVAQSCEALGQGLLLVAVGPSRSLDEGT 159 Query 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 AAVL AGVDGFVVYSV DDDPYLQ VLQRRLPVVVVDQPK L+GVSRVGIDDRAAMRELA Sbjct 160 AAVLSAGVDGFVVYSVCDDDPYLQAVLQRRLPVVVVDQPKGLTGVSRVGIDDRAAMRELA 219 Query 181 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 YVLGLGHRE+GLLTMRLGRDRRQ LVDAERLRSP FDVQRERI GVWEAMTAAGVDPDS Sbjct 220 DYVLGLGHREIGLLTMRLGRDRRQGLVDAERLRSPAFDVQRERITGVWEAMTAAGVDPDS 279 Query 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 LTVVESYEHLP SGG AAKVAL+ANPR+TALMCTADILALSAMDYLRAHG+YVPGQ+TVT Sbjct 280 LTVVESYEHLPESGGAAAKVALEANPRITALMCTADILALSAMDYLRAHGVYVPGQLTVT 339 Query 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 GFDGVP+A+SRGLTTV+Q SLHKG RAGELLLKP RSGLPV+E+LDTEL+RGRTAGPPA Sbjct 340 GFDGVPDAISRGLTTVSQSSLHKGSRAGELLLKPARSGLPVVELLDTELIRGRTAGPPA 398 >gi|118462693|ref|YP_879864.1| LacI family transcriptional regulator [Mycobacterium avium 104] gi|118163980|gb|ABK64877.1| transcriptional regulator, LacI family protein [Mycobacterium avium 104] Length=359 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/359 (91%), Positives = 339/359 (95%), Gaps = 0/359 (0%) Query 1 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 +SPTPRRRATLASLA ELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGY GPDPVAR Sbjct 1 MSPTPRRRATLASLADELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYPGPDPVAR 60 Query 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFV GVAQSCE LGQGL LV+VG SRSL +GT Sbjct 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVTGVAQSCEALGQGLLLVAVGPSRSLDEGT 120 Query 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 AAVL AGVDGFVVYSV DDDPYLQ VLQRRLPVVVVDQPK L+GVSRVGIDDRAAMRELA Sbjct 121 AAVLSAGVDGFVVYSVCDDDPYLQAVLQRRLPVVVVDQPKGLTGVSRVGIDDRAAMRELA 180 Query 181 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 YVLGLGHRE+GLLTMRLGRDRRQ LVDAERLRSP FDVQRERI GVWEAMTAAGVDPDS Sbjct 181 DYVLGLGHREIGLLTMRLGRDRRQGLVDAERLRSPAFDVQRERITGVWEAMTAAGVDPDS 240 Query 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 LTVVESYEHLP SGG AAKVAL+ANPR+TALMCTADILALSAMDYLRAHG+YVPGQ+TVT Sbjct 241 LTVVESYEHLPESGGAAAKVALEANPRITALMCTADILALSAMDYLRAHGVYVPGQLTVT 300 Query 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 GFDGVP+A+SRGLTTV+Q SLHKG RAGELLLKP RSGLPV+E+LDTEL+RGRTAGPPA Sbjct 301 GFDGVPDAISRGLTTVSQSSLHKGRRAGELLLKPARSGLPVVELLDTELIRGRTAGPPA 359 >gi|254773542|ref|ZP_05215058.1| hypothetical protein MaviaA2_02535 [Mycobacterium avium subsp. avium ATCC 25291] Length=359 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/359 (90%), Positives = 338/359 (95%), Gaps = 0/359 (0%) Query 1 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 +SPTPRRRATLASLA ELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGY GPDPVAR Sbjct 1 MSPTPRRRATLASLADELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYPGPDPVAR 60 Query 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFV GVAQSCE LGQGL LV+VG SRSL +GT Sbjct 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVTGVAQSCEALGQGLLLVAVGPSRSLDEGT 120 Query 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 AAVL AGVDGFVVYSV DDDPYLQ VLQRRLPVVVVDQPK L+GVSRVGIDDRAAMRELA Sbjct 121 AAVLSAGVDGFVVYSVCDDDPYLQAVLQRRLPVVVVDQPKGLTGVSRVGIDDRAAMRELA 180 Query 181 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 YVLGLGHRE+GLLTMRLGRDRRQ LVDAERLRSP FDVQRERI GVWEAMTAAGVDPDS Sbjct 181 DYVLGLGHREIGLLTMRLGRDRRQGLVDAERLRSPAFDVQRERITGVWEAMTAAGVDPDS 240 Query 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 LTVVESYEHLP SGG AAKVAL+ANPR+TALMCTADILALSAMDYLRAHG+YVPGQ+TVT Sbjct 241 LTVVESYEHLPESGGAAAKVALEANPRITALMCTADILALSAMDYLRAHGVYVPGQLTVT 300 Query 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 GFDGVP+ +SRGLTTV+Q SLHKG RAGELLLKP RSGLPV+E+LDTEL+RGRTAGPPA Sbjct 301 GFDGVPDGISRGLTTVSQSSLHKGRRAGELLLKPARSGLPVVELLDTELIRGRTAGPPA 359 >gi|342862407|ref|ZP_08719047.1| hypothetical protein MCOL_26068 [Mycobacterium colombiense CECT 3035] gi|342130078|gb|EGT83412.1| hypothetical protein MCOL_26068 [Mycobacterium colombiense CECT 3035] Length=362 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/362 (90%), Positives = 338/362 (94%), Gaps = 3/362 (0%) Query 1 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 +SPTPRRRATLASLA EL VSRTT+SNAFNRPDQLS DLRERVLATAKRLGYAGPDPVAR Sbjct 1 MSPTPRRRATLASLADELNVSRTTISNAFNRPDQLSPDLRERVLATAKRLGYAGPDPVAR 60 Query 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFV GVAQSCE LGQGL LV+VG SR L DGT Sbjct 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVTGVAQSCEALGQGLLLVAVGPSRGLKDGT 120 Query 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 AAVL AGVDGFVVYSV DDDPYLQVVLQRRLPVVVVDQPK L+GVSRVGIDDRAAMRELA Sbjct 121 AAVLSAGVDGFVVYSVCDDDPYLQVVLQRRLPVVVVDQPKGLAGVSRVGIDDRAAMRELA 180 Query 181 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 YVLGLGHRE+GLLTMRLGRDRRQ LVDAERLRSP FDVQRERI+GVWEAMTAAGVDPDS Sbjct 181 DYVLGLGHREIGLLTMRLGRDRRQGLVDAERLRSPAFDVQRERIIGVWEAMTAAGVDPDS 240 Query 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 LTVVESYEHLP SGG AAKVAL+ANPR+TALMCTADILALSAMDYLRAHGIYVPGQMTVT Sbjct 241 LTVVESYEHLPESGGAAAKVALEANPRITALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 Query 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRS---GLPVIEVLDTELVRGRTAGP 357 GFDGVPEA++RGLTTV+Q SL KG RAGELLLKPPR+ GLP +E+LDTELVRGRTAGP Sbjct 301 GFDGVPEAINRGLTTVSQSSLQKGRRAGELLLKPPRTGTPGLPTVELLDTELVRGRTAGP 360 Query 358 PA 359 PA Sbjct 361 PA 362 >gi|254822723|ref|ZP_05227724.1| hypothetical protein MintA_22529 [Mycobacterium intracellulare ATCC 13950] Length=359 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/358 (90%), Positives = 336/358 (94%), Gaps = 0/358 (0%) Query 1 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 +SPTPRRRATLAS+A EL VSRTT+SNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR Sbjct 1 MSPTPRRRATLASVADELNVSRTTISNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 Query 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFV GVAQSCE GQGL LV+VG SRSL +GT Sbjct 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVTGVAQSCEAAGQGLLLVAVGPSRSLKEGT 120 Query 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 AVL AGVDGFVVYSV DDDPYLQVVLQRRLPVVVVDQPKDL+G SRVGIDDRAAMRELA Sbjct 121 DAVLSAGVDGFVVYSVCDDDPYLQVVLQRRLPVVVVDQPKDLAGASRVGIDDRAAMRELA 180 Query 181 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 YVLGLGHRE+GLLTMRLGRDRR LVDAERLRSP FDVQRERI+GVWEAMTAAG+DPDS Sbjct 181 DYVLGLGHREIGLLTMRLGRDRRHGLVDAERLRSPAFDVQRERIIGVWEAMTAAGIDPDS 240 Query 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 LTVVESYEHL SGG AAKVAL+ NPR+TAL+CTADILALSAMDYLRAHGIYVPGQ+TVT Sbjct 241 LTVVESYEHLAESGGAAAKVALETNPRITALLCTADILALSAMDYLRAHGIYVPGQLTVT 300 Query 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPP 358 GFDGVPEA+SRGLTTV+QPSLHKG RAGELLLKPPRSGLPV E+LDTEL+RGRTAGPP Sbjct 301 GFDGVPEAISRGLTTVSQPSLHKGRRAGELLLKPPRSGLPVTELLDTELIRGRTAGPP 358 >gi|240169807|ref|ZP_04748466.1| PurR family transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length=359 Score = 632 bits (1631), Expect = 2e-179, Method: Compositional matrix adjust. Identities = 315/359 (88%), Positives = 338/359 (95%), Gaps = 0/359 (0%) Query 1 VSPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVAR 60 + P+PRRRATLASLAAEL+VSRTT+SNAFNRPDQLS +LRERVLATAKR+GYAGPDPVAR Sbjct 1 MGPSPRRRATLASLAAELQVSRTTISNAFNRPDQLSTELRERVLATAKRMGYAGPDPVAR 60 Query 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGT 120 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEE GQGL LV+VG+SRSL DGT Sbjct 61 SLRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEEPGQGLLLVAVGASRSLEDGT 120 Query 121 AAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELA 180 AVL AGVDGFVVYSV DDDPYLQVVLQRRLPVVVVDQPKDL+GVSRVGIDDRAAMR++A Sbjct 121 TAVLNAGVDGFVVYSVCDDDPYLQVVLQRRLPVVVVDQPKDLAGVSRVGIDDRAAMRKVA 180 Query 181 GYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDS 240 YVLGLGHR++GLLTMRLG DRRQ LVDAERL+SP FDVQRERI+GVW+AMTAAG DPDS Sbjct 181 DYVLGLGHRDIGLLTMRLGHDRRQGLVDAERLQSPAFDVQRERIMGVWDAMTAAGADPDS 240 Query 241 LTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVT 300 LTVVESYEHLPTSGG AAKVAL ANPR+TALMCTADILALSAMDYLR HGIYVPGQMTVT Sbjct 241 LTVVESYEHLPTSGGAAAKVALTANPRITALMCTADILALSAMDYLRGHGIYVPGQMTVT 300 Query 301 GFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 GFDGVPEA+SRGLTTV+QPSL KG RAGELL +PPRSGLPV+E+L TEL+RGRT GPPA Sbjct 301 GFDGVPEAISRGLTTVSQPSLQKGRRAGELLHQPPRSGLPVVELLATELIRGRTCGPPA 359 >gi|336458484|gb|EGO37457.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=348 Score = 621 bits (1602), Expect = 5e-176, Method: Compositional matrix adjust. Identities = 313/347 (91%), Positives = 327/347 (95%), Gaps = 0/347 (0%) Query 13 SLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTRKAGAVGL 72 SLA ELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGY GPDPVARSLRTRKAGAVGL Sbjct 2 SLADELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYPGPDPVARSLRTRKAGAVGL 61 Query 73 VMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLGAGVDGFV 132 VMAEPLTYFFSDPAARDFV GVAQSCE LGQGL LV+VG SRSL +GTAAVL AGVDGFV Sbjct 62 VMAEPLTYFFSDPAARDFVTGVAQSCEALGQGLLLVAVGPSRSLDEGTAAVLSAGVDGFV 121 Query 133 VYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLGLGHRELG 192 VYSV DDDPYLQ VLQRRLPVVVVDQPK L+GVSRVGIDDRAAMRELA YVLGLGHRE+G Sbjct 122 VYSVCDDDPYLQAVLQRRLPVVVVDQPKGLTGVSRVGIDDRAAMRELADYVLGLGHREIG 181 Query 193 LLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVESYEHLPT 252 LLTMRLGRDRRQ LVDAERLRSP FDVQRERI GVWEAMTAAGVDPDSLTVVESYEHLP Sbjct 182 LLTMRLGRDRRQGLVDAERLRSPAFDVQRERITGVWEAMTAAGVDPDSLTVVESYEHLPE 241 Query 253 SGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGVPEALSRG 312 SGG AAKVAL+ANPR+TALMCTADILALSAMDYLRAHG+YVPGQ+TVTGFDGVP+A+SRG Sbjct 242 SGGAAAKVALEANPRITALMCTADILALSAMDYLRAHGVYVPGQLTVTGFDGVPDAISRG 301 Query 313 LTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 LTTV+Q SLHKG RAGELLLKP RSGLPV+E+LDTEL+RGRTAGPPA Sbjct 302 LTTVSQSSLHKGRRAGELLLKPARSGLPVVELLDTELIRGRTAGPPA 348 >gi|296166624|ref|ZP_06849052.1| LacI family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898027|gb|EFG77605.1| LacI family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=346 Score = 598 bits (1542), Expect = 4e-169, Method: Compositional matrix adjust. Identities = 307/345 (89%), Positives = 323/345 (94%), Gaps = 0/345 (0%) Query 14 LAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTRKAGAVGLV 73 +A ELKVSRTT+SNAFNRPDQLSADLRERVLATAKRLGY GPDPVARSLRTRKAGAVGLV Sbjct 1 MADELKVSRTTISNAFNRPDQLSADLRERVLATAKRLGYPGPDPVARSLRTRKAGAVGLV 60 Query 74 MAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLGAGVDGFVV 133 MAEPLTYFFSDPAARDFVAGVAQSCEELGQGL LV+VG RS+ DGT AVLGAGVDGFVV Sbjct 61 MAEPLTYFFSDPAARDFVAGVAQSCEELGQGLLLVAVGPGRSIQDGTGAVLGAGVDGFVV 120 Query 134 YSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLGLGHRELGL 193 YSV +DDPYLQVVLQRRLPVVVVDQPK L+GVSRVGIDDRAAMRELA YVLGLGHRE+GL Sbjct 121 YSVCEDDPYLQVVLQRRLPVVVVDQPKGLAGVSRVGIDDRAAMRELADYVLGLGHREIGL 180 Query 194 LTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVESYEHLPTS 253 LTMRLGRDRRQ LVDA+RLRSP FDVQRERI+GVWEAM AAGVD D+LTVVESYEH P S Sbjct 181 LTMRLGRDRRQGLVDADRLRSPAFDVQRERIIGVWEAMAAAGVDLDALTVVESYEHQPDS 240 Query 254 GGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGVPEALSRGL 313 GG AA+ AL+ANPR+TALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGVP+AL RGL Sbjct 241 GGAAARAALEANPRITALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGVPDALGRGL 300 Query 314 TTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPP 358 TTV+QPSL KG RAGELLL PPRSGLPV+EVLDTELVRGRTAGPP Sbjct 301 TTVSQPSLQKGRRAGELLLSPPRSGLPVVEVLDTELVRGRTAGPP 345 >gi|120406265|ref|YP_956094.1| periplasmic binding protein/LacI transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959083|gb|ABM16088.1| transcriptional regulator, LacI family [Mycobacterium vanbaalenii PYR-1] Length=366 Score = 560 bits (1443), Expect = 1e-157, Method: Compositional matrix adjust. Identities = 287/363 (80%), Positives = 317/363 (88%), Gaps = 5/363 (1%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 SPTPRRRATLASLAAELKVSRTTVSNA+NRPDQLSA+LRERVL+TA+RLGY GPDPVARS Sbjct 4 SPTPRRRATLASLAAELKVSRTTVSNAYNRPDQLSAELRERVLSTAERLGYPGPDPVARS 63 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTR+AGAVGLV+ EPL Y FSDPAA DFVAG+A+SCE +GQGL LV+VG +RS+ADG+A Sbjct 64 LRTRRAGAVGLVITEPLNYSFSDPAALDFVAGLAESCEAVGQGLLLVAVGPNRSVADGSA 123 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 AVL AGVDGFVVYS DDDPYL VLQR LPVVVVDQP+D++G SRV IDDRAAMR LA Sbjct 124 AVLAAGVDGFVVYSASDDDPYLPAVLQRHLPVVVVDQPRDVAGTSRVCIDDRAAMRRLAE 183 Query 182 YVLGLGHRELGLLTMRLGRDRRQD-----LVDAERLRSPTFDVQRERIVGVWEAMTAAGV 236 +V+ LGHRE+GLLTMRLGRDR L D ERLR+P F VQ ERI GV++AMTAAG+ Sbjct 184 HVIELGHREIGLLTMRLGRDRPHGGSTPVLADPERLRTPHFHVQGERIRGVYDAMTAAGL 243 Query 237 DPDSLTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQ 296 DP SLTVVESYEHLP+SGG A VAL ANPR+TALMCTAD+LALSAMD+LRA GIYVPGQ Sbjct 244 DPGSLTVVESYEHLPSSGGAGADVALDANPRITALMCTADVLALSAMDHLRAKGIYVPGQ 303 Query 297 MTVTGFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAG 356 MTVTGFDGVPEA RGLTTV QPS+ KG RAGELL PPRSGLPVIEVLDTE+VRGRT+G Sbjct 304 MTVTGFDGVPEARRRGLTTVVQPSVEKGRRAGELLHHPPRSGLPVIEVLDTEMVRGRTSG 363 Query 357 PPA 359 PPA Sbjct 364 PPA 366 >gi|145222049|ref|YP_001132727.1| periplasmic binding protein/LacI transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315446209|ref|YP_004079088.1| LacI family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145214535|gb|ABP43939.1| transcriptional regulator, LacI family [Mycobacterium gilvum PYR-GCK] gi|315264512|gb|ADU01254.1| transcriptional regulator, LacI family [Mycobacterium sp. Spyr1] Length=365 Score = 553 bits (1424), Expect = 2e-155, Method: Compositional matrix adjust. Identities = 279/362 (78%), Positives = 316/362 (88%), Gaps = 4/362 (1%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 SPTPRRRATLASLAAELKVSRTTVSNA+NRPDQLSA+LRERVL+TAKRLGY GPDPVARS Sbjct 4 SPTPRRRATLASLAAELKVSRTTVSNAYNRPDQLSAELRERVLSTAKRLGYPGPDPVARS 63 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTR+AGAVGLV+ EPL Y FSDPAA DFVAG+A+SCE +GQGL LV+VG +RS+A+G+A Sbjct 64 LRTRRAGAVGLVITEPLNYSFSDPAALDFVAGLAESCEAVGQGLLLVAVGPNRSVAEGSA 123 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 AVL AGVDGFVVYS DDDPYL V++R LPVVVVDQP+D+ G S+V IDDRAAMR LA Sbjct 124 AVLAAGVDGFVVYSASDDDPYLPAVMERHLPVVVVDQPRDVPGASQVRIDDRAAMRSLAE 183 Query 182 YVLGLGHRELGLLTMRLGRDRRQD----LVDAERLRSPTFDVQRERIVGVWEAMTAAGVD 237 +V+ LGHRE+GLLTMRLGRD L D ER+R+P F VQ ERI GV++AMTAAG+D Sbjct 184 HVIDLGHREIGLLTMRLGRDWPHGPGPALADPERVRAPNFHVQCERIHGVYDAMTAAGLD 243 Query 238 PDSLTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQM 297 P SLT+VESYEHLPTSGG A +AL+ANPR+TALMCTAD+LALSAMD+LRA GIYVPGQM Sbjct 244 PASLTLVESYEHLPTSGGAGADIALEANPRITALMCTADVLALSAMDHLRAKGIYVPGQM 303 Query 298 TVTGFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGP 357 TVTGFDGVPEA RGLTTVAQP + KG RAGELL PPRSGLPV+EVLDTE++RGRT+GP Sbjct 304 TVTGFDGVPEARQRGLTTVAQPGVEKGRRAGELLHNPPRSGLPVVEVLDTEVIRGRTSGP 363 Query 358 PA 359 PA Sbjct 364 PA 365 >gi|108801679|ref|YP_641876.1| LacI family transcriptional regulator [Mycobacterium sp. MCS] gi|119870830|ref|YP_940782.1| LacI family transcriptional regulator [Mycobacterium sp. KMS] gi|108772098|gb|ABG10820.1| transcriptional regulator, LacI family [Mycobacterium sp. MCS] gi|119696919|gb|ABL93992.1| transcriptional regulator, LacI family [Mycobacterium sp. KMS] Length=366 Score = 542 bits (1396), Expect = 3e-152, Method: Compositional matrix adjust. Identities = 271/363 (75%), Positives = 313/363 (87%), Gaps = 5/363 (1%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 SP PRR ATLASLAAELKVSRTT+SNA+NRPDQLSA+LRER+ + AKRLGY GPDPVARS Sbjct 4 SPEPRRHATLASLAAELKVSRTTISNAYNRPDQLSAELRERIFSAAKRLGYPGPDPVARS 63 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTR+AGAVGL++ EPL Y FSDPAA DFVAG+A+SCEE GQGL LV++G +RS+ADG+A Sbjct 64 LRTRRAGAVGLMITEPLNYSFSDPAALDFVAGLAESCEEAGQGLLLVAIGPNRSVADGSA 123 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 AVL AGVDGFV+YS DDDPYL VV QR LPVVVVDQPKD+ G SRVGIDDRAAMREL Sbjct 124 AVLAAGVDGFVIYSASDDDPYLPVVQQRHLPVVVVDQPKDVPGTSRVGIDDRAAMRELTE 183 Query 182 YVLGLGHRELGLLTMRLGRDR-----RQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGV 236 YVLGLGHR++GLLTMRLG DR R + +RLR+P F VQRERI GV++A+ AAG+ Sbjct 184 YVLGLGHRDIGLLTMRLGLDRPDGDPRPAVAHPDRLRTPHFHVQRERIGGVFDAIAAAGL 243 Query 237 DPDSLTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQ 296 D ++TVVESYEHLPTSGG AA+VAL NPRLTALMCTAD+LALSAMD+LR+ GIYVPGQ Sbjct 244 DQRAVTVVESYEHLPTSGGAAAEVALATNPRLTALMCTADVLALSAMDHLRSRGIYVPGQ 303 Query 297 MTVTGFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAG 356 MTVTGFDG+P+A+ RGLTTV QPS+ KG RAG LL +PPR+GLPV+++LDT +VRGRTAG Sbjct 304 MTVTGFDGIPDAVRRGLTTVVQPSMEKGRRAGRLLHQPPRNGLPVVDILDTRMVRGRTAG 363 Query 357 PPA 359 PPA Sbjct 364 PPA 366 >gi|126437665|ref|YP_001073356.1| LacI family transcriptional regulator [Mycobacterium sp. JLS] gi|126237465|gb|ABO00866.1| transcriptional regulator, LacI family [Mycobacterium sp. JLS] Length=366 Score = 536 bits (1380), Expect = 3e-150, Method: Compositional matrix adjust. Identities = 269/363 (75%), Positives = 311/363 (86%), Gaps = 5/363 (1%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 S PRR ATLASLAAELKVSRTT+SNA+NRPDQLSA+LRER+ + AKRLGY GPDPVARS Sbjct 4 SAEPRRHATLASLAAELKVSRTTISNAYNRPDQLSAELRERIFSAAKRLGYPGPDPVARS 63 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTR+AGAVGL++ EPL Y FSDPAA DFVAG+A+SCEE GQGL LV++G +RS+ADG+A Sbjct 64 LRTRRAGAVGLMITEPLNYSFSDPAALDFVAGLAESCEEAGQGLLLVAIGPNRSVADGSA 123 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 AVL AGVDGFV+YS DDDPYL VV QR LPVVVVDQPKD+ G SRVGIDDRAAMREL Sbjct 124 AVLAAGVDGFVIYSASDDDPYLPVVQQRHLPVVVVDQPKDVPGTSRVGIDDRAAMRELTE 183 Query 182 YVLGLGHRELGLLTMRLGRDR-----RQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGV 236 YVLGLGHR++GLLTMRLG DR R + +RLR+P F VQRERI GV++A+ AAG+ Sbjct 184 YVLGLGHRDIGLLTMRLGLDRPDGDPRPAVAHPDRLRTPHFHVQRERIGGVFDAIAAAGL 243 Query 237 DPDSLTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQ 296 D ++TVVESYEHLPTSGG AA+VAL NPRLTALMCTAD+LALSAMD+LR+ GIYVPGQ Sbjct 244 DQRAVTVVESYEHLPTSGGAAAEVALATNPRLTALMCTADVLALSAMDHLRSRGIYVPGQ 303 Query 297 MTVTGFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAG 356 MTVTGFDG+P+A+ RGLTTV QPS+ KG RAG LL +PPR+GLPV+++LDT +VRGRTAG Sbjct 304 MTVTGFDGIPDAVRRGLTTVVQPSMEKGRRAGRLLHQPPRNGLPVVDILDTRMVRGRTAG 363 Query 357 PPA 359 PA Sbjct 364 APA 366 >gi|118471149|ref|YP_890268.1| ligand-binding /sugar binding domain-containing protein [Mycobacterium smegmatis str. MC2 155] gi|118172436|gb|ABK73332.1| periplasmic binding proteins and sugar binding domain of the LacI family protein, putative [Mycobacterium smegmatis str. MC2 155] Length=366 Score = 535 bits (1379), Expect = 3e-150, Method: Compositional matrix adjust. Identities = 272/363 (75%), Positives = 309/363 (86%), Gaps = 5/363 (1%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 SP P RRATLASLAAELKVSRTT+SNA+NRPDQLSADLRER+ AKRLGY GPDPVARS Sbjct 4 SPHPPRRATLASLAAELKVSRTTISNAYNRPDQLSADLRERIFDAAKRLGYPGPDPVARS 63 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTRKAGAVGL++ EPL Y FSDPAA DFVAG+A+SCEE GQGL LV+VG +R+ +G+ Sbjct 64 LRTRKAGAVGLMITEPLDYSFSDPAALDFVAGLAESCEEAGQGLLLVAVGPNRTFEEGSN 123 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 +VL AGVDGFVVYS DDDPYL V+ QR+LP+VVVDQPKD+ GVSR+ IDDR AMRELA Sbjct 124 SVLAAGVDGFVVYSASDDDPYLPVLQQRQLPMVVVDQPKDVPGVSRISIDDRGAMRELAE 183 Query 182 YVLGLGHRELGLLTMRLGRDR-----RQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGV 236 YVL LGHR++GLLTMRLGRD R L D ER+ SP F VQRERI GV++AM+AAG+ Sbjct 184 YVLELGHRDIGLLTMRLGRDWPHGDPRPALADPERVLSPHFHVQRERIHGVYDAMSAAGL 243 Query 237 DPDSLTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQ 296 DP SLTVVESYEHLPTSGG AA+VAL+ NPR+TALMCTAD+LALSAMD+LR+ GIYVPG Sbjct 244 DPSSLTVVESYEHLPTSGGAAAEVALEVNPRITALMCTADVLALSAMDHLRSRGIYVPGH 303 Query 297 MTVTGFDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAG 356 MTVTGFDGV +AL RGLTTV QPS+ KG RAG LL PP SGLPVI+VL+TE+VRGRT+G Sbjct 304 MTVTGFDGVRDALRRGLTTVKQPSMEKGRRAGHLLHNPPGSGLPVIDVLETEVVRGRTSG 363 Query 357 PPA 359 PPA Sbjct 364 PPA 366 >gi|229494135|ref|ZP_04387898.1| transcriptional regulator, LacI family [Rhodococcus erythropolis SK121] gi|229318497|gb|EEN84355.1| transcriptional regulator, LacI family [Rhodococcus erythropolis SK121] Length=362 Score = 449 bits (1155), Expect = 3e-124, Method: Compositional matrix adjust. Identities = 227/355 (64%), Positives = 274/355 (78%), Gaps = 0/355 (0%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 S PRR+ATLASLAAEL VSRTTVSNA+NRPDQLS +LR+RVL AKR GY GPDPVARS Sbjct 4 SRQPRRQATLASLAAELNVSRTTVSNAYNRPDQLSVELRDRVLQAAKRRGYPGPDPVARS 63 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTRKAGAVGL++ E L+Y F DPAA F+AG+++SCE+ GQGL L+ G R D A Sbjct 64 LRTRKAGAVGLLLTEALSYSFRDPAAMSFLAGLSESCEDAGQGLLLIPAGPGRDEVDAAA 123 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 V AGVDGFVVYSV DDDPYL VL+R +P+VV DQP+++ G S VGIDDRAAMR++A Sbjct 124 VVQQAGVDGFVVYSVADDDPYLAAVLERHIPIVVCDQPREIPGASLVGIDDRAAMRKVAD 183 Query 182 YVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSL 241 Y++GLGHR++G+L MRLGRDR +V ERL+SP F VQRERI GV +AM AA +DP SL Sbjct 184 YLIGLGHRDIGVLCMRLGRDRMDGVVSQERLKSPHFHVQRERIEGVRDAMVAADMDPLSL 243 Query 242 TVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTG 301 TV+E Y H SG +AA AL NP +TAL+CT D+LAL A+D+ R GI VPGQ+++TG Sbjct 244 TVIERYVHTSQSGHSAAAEALATNPEITALVCTTDVLALGALDWARWQGIDVPGQLSITG 303 Query 302 FDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAG 356 FDGV EAL LTTV QP KG RAG LL+ P SG+P++E+LDTEL+ GRT+G Sbjct 304 FDGVDEALRESLTTVRQPQEEKGRRAGALLMSPSGSGVPIVEMLDTELLAGRTSG 358 >gi|226304193|ref|YP_002764151.1| LacI family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226183308|dbj|BAH31412.1| putative LacI family transcriptional regulator [Rhodococcus erythropolis PR4] Length=362 Score = 448 bits (1153), Expect = 6e-124, Method: Compositional matrix adjust. Identities = 226/355 (64%), Positives = 274/355 (78%), Gaps = 0/355 (0%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 S PRR+ATLASLAAEL VSRTTVSNA+NRPDQLS +LR+RVL AKR GY GPDPVARS Sbjct 4 SRQPRRQATLASLAAELNVSRTTVSNAYNRPDQLSVELRDRVLQAAKRRGYPGPDPVARS 63 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTRKAGAVGL++ E L+Y F DPAA F+AG+++SCE+ GQGL L+ G R D A Sbjct 64 LRTRKAGAVGLLLTEALSYSFRDPAAMSFLAGLSESCEDAGQGLLLIPAGPGRDEVDAAA 123 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 V AGVDGFVVYSV DDDPYL VL+R +P+VV DQP+++ G S VGIDDRAAMR++A Sbjct 124 VVQQAGVDGFVVYSVADDDPYLAAVLERHIPIVVCDQPREIPGASLVGIDDRAAMRKVAD 183 Query 182 YVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSL 241 Y++GLGHR++G+L MRLGRDR +V ERL+SP F VQRERI GV +AM A+ +DP SL Sbjct 184 YLIGLGHRDIGVLCMRLGRDRMDGVVSQERLKSPHFHVQRERIEGVRDAMVASDMDPLSL 243 Query 242 TVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTG 301 TV+E Y H SG +AA AL NP +TAL+CT D+LAL A+D+ R GI VPGQ+++TG Sbjct 244 TVIERYVHTSQSGHSAAAEALATNPEITALVCTTDVLALGALDWARWQGIDVPGQLSITG 303 Query 302 FDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAG 356 FDGV EAL LTTV QP KG RAG LL+ P SG+P++E+LDTEL+ GRT+G Sbjct 304 FDGVDEALRESLTTVRQPQEEKGRRAGALLMSPSGSGVPIVEMLDTELLAGRTSG 358 >gi|111021452|ref|YP_704424.1| LacI family transcription regulator [Rhodococcus jostii RHA1] gi|110820982|gb|ABG96266.1| probable transcriptional regulator, LacI family protein [Rhodococcus jostii RHA1] Length=362 Score = 443 bits (1140), Expect = 2e-122, Method: Compositional matrix adjust. Identities = 228/356 (65%), Positives = 277/356 (78%), Gaps = 0/356 (0%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 S PRR+ATLASLAAEL +SRTTVSNA+NRPDQLSA+LR+RVL AKR GY GPDPVARS Sbjct 4 SRQPRRQATLASLAAELNISRTTVSNAYNRPDQLSAELRDRVLQAAKRRGYPGPDPVARS 63 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTR+AGAVGL++ E L+Y F DPAA F++G+A+SCE GQGL L+ G R AD A Sbjct 64 LRTRRAGAVGLLLTEALSYSFRDPAAMSFLSGLAESCEAAGQGLLLIPAGPGREEADAAA 123 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 V AGVDGFVVYSV DDDPYL V +R LP+VV DQP+++ G S +GIDDR AMR LA Sbjct 124 VVQQAGVDGFVVYSVADDDPYLAAVCERHLPMVVCDQPREIPGASLIGIDDRGAMRGLAD 183 Query 182 YVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSL 241 Y++GLGHR++G+L+MRLGRDR + DAERLRSP F VQRERI GV +AM+ AG+DP +L Sbjct 184 YLIGLGHRDIGVLSMRLGRDRSDGVADAERLRSPNFHVQRERIEGVRDAMSDAGLDPRTL 243 Query 242 TVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTG 301 TVVE +EH SG AA AL NPR+TAL+CT D+LAL A+D+ R GI VPG++++TG Sbjct 244 TVVERFEHTGKSGHAAAAQALGVNPRITALVCTTDVLALGALDWARWQGIDVPGRLSITG 303 Query 302 FDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGP 357 FDGV +AL GLTTV QP KG RAG LL+ P SG+ ++E+L+TEL+RG TAGP Sbjct 304 FDGVDDALREGLTTVRQPQEEKGRRAGALLMSPSHSGVAIVEMLETELLRGSTAGP 359 >gi|312138114|ref|YP_004005450.1| substrate-binding protein [Rhodococcus equi 103S] gi|311887453|emb|CBH46765.1| putative substrate binding protein [Rhodococcus equi 103S] Length=363 Score = 442 bits (1138), Expect = 3e-122, Method: Compositional matrix adjust. Identities = 225/357 (64%), Positives = 270/357 (76%), Gaps = 0/357 (0%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 S PRR+ATLASLAAELKVSRTTVSNA+NRPDQLSA+LRERVL AKR GY GPDPVARS Sbjct 4 SRQPRRQATLASLAAELKVSRTTVSNAYNRPDQLSAELRERVLQAAKRRGYPGPDPVARS 63 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTR+AGAVGL++ E L+Y F DPAA F+AG+A+SCE GQGL LV G R D A Sbjct 64 LRTRRAGAVGLLLTEALSYSFRDPAAMSFLAGLAESCEAAGQGLLLVPAGPGRDDVDAAA 123 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 V AGVDGFVVYSV DDDPYL V +R LP V+ DQP+++SG S VGIDDR AMR++A Sbjct 124 VVQQAGVDGFVVYSVADDDPYLAAVRERHLPTVICDQPREMSGASLVGIDDRGAMRKVAD 183 Query 182 YVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSL 241 Y++ LGH E+G+L MRLGRDR +V ERL +P F VQRERI GV +AM+ AG+DP SL Sbjct 184 YLITLGHVEIGVLCMRLGRDRADGVVQGERLHAPNFHVQRERIAGVRDAMSDAGLDPSSL 243 Query 242 TVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTG 301 TVVE +EH SG +AA A NP++TAL+CT D+LAL A+D+ R G+ VPG++++TG Sbjct 244 TVVERFEHTAQSGHSAAAQAFAVNPKITALVCTTDVLALGALDWARCEGLDVPGRVSITG 303 Query 302 FDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPP 358 FDG+ EAL GLTTV QP KG RAG LL+ SG+ +E+L+TELVRG TA P Sbjct 304 FDGIEEALREGLTTVRQPQEDKGRRAGALLMSGSDSGVTTVEMLETELVRGHTAASP 360 >gi|226363818|ref|YP_002781600.1| LacI family transcriptional regulator [Rhodococcus opacus B4] gi|226242307|dbj|BAH52655.1| putative LacI family transcriptional regulator [Rhodococcus opacus B4] Length=362 Score = 442 bits (1136), Expect = 6e-122, Method: Compositional matrix adjust. Identities = 229/356 (65%), Positives = 273/356 (77%), Gaps = 0/356 (0%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 S PRR+ATLASLAAEL +SRTTVSNA+NRPDQLSA+LR+RVL AKR GY GPDPVARS Sbjct 4 SRQPRRQATLASLAAELNISRTTVSNAYNRPDQLSAELRDRVLQAAKRRGYPGPDPVARS 63 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTRKAGAVGL++ E L+Y F DPAA F++G+A+SCE GQGL L+ G R AD A Sbjct 64 LRTRKAGAVGLLLTEALSYSFRDPAAMSFLSGLAESCEAAGQGLLLIPAGPGREEADAAA 123 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 V AGVDGFVVYSV DDDPYL V +R LP+VV DQP+++ G S VGIDDR AMR LA Sbjct 124 VVQQAGVDGFVVYSVADDDPYLAAVCERHLPMVVCDQPREIPGASLVGIDDRGAMRGLAD 183 Query 182 YVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSL 241 Y++GLGHR++G+L+MRLGRDR + DAERLRSP F VQRERI GV +AM AG+DP +L Sbjct 184 YLIGLGHRDIGVLSMRLGRDRSDGVADAERLRSPNFHVQRERIEGVRDAMADAGLDPATL 243 Query 242 TVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTG 301 TV+E +EH SG A AL NPR+TAL+CT D+LAL A+D+ R GI VP Q++VTG Sbjct 244 TVIERFEHTAKSGHAGAAQALGVNPRITALVCTTDVLALGALDWARWQGIDVPAQLSVTG 303 Query 302 FDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGP 357 FDGV +AL GLTTV QP KG RAG LL+ P SG+ +E+L+TEL+RG TAGP Sbjct 304 FDGVDDALREGLTTVRQPQEEKGRRAGALLMSPSHSGVATVEMLETELLRGTTAGP 359 >gi|325674982|ref|ZP_08154669.1| LacI family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325554568|gb|EGD24243.1| LacI family transcriptional regulator [Rhodococcus equi ATCC 33707] Length=386 Score = 441 bits (1135), Expect = 7e-122, Method: Compositional matrix adjust. Identities = 225/357 (64%), Positives = 270/357 (76%), Gaps = 0/357 (0%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 S PRR+ATLASLAAELKVSRTTVSNA+NRPDQLSA+LRERVL AKR GY GPDPVARS Sbjct 27 SRQPRRQATLASLAAELKVSRTTVSNAYNRPDQLSAELRERVLQAAKRRGYPGPDPVARS 86 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTR+AGAVGL++ E L+Y F DPAA F+AG+A+SCE GQGL LV G R D A Sbjct 87 LRTRRAGAVGLLLTEALSYSFRDPAAMSFLAGLAESCEAAGQGLLLVPAGPGRDDVDAAA 146 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 V AGVDGFVVYSV DDDPYL V +R LP V+ DQP+++SG S VGIDDR AMR++A Sbjct 147 VVQQAGVDGFVVYSVADDDPYLAAVRERHLPTVICDQPREMSGASLVGIDDRGAMRKVAD 206 Query 182 YVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSL 241 Y++ LGH E+G+L MRLGRDR +V ERL +P F VQRERI GV +AM+ AG+DP SL Sbjct 207 YLITLGHVEIGVLCMRLGRDRADGVVQGERLHAPNFHVQRERIAGVRDAMSDAGLDPSSL 266 Query 242 TVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTG 301 TVVE +EH SG +AA A NP++TAL+CT D+LAL A+D+ R G+ VPG++++TG Sbjct 267 TVVERFEHTAQSGHSAAAQAFAVNPKITALVCTTDVLALGALDWARCEGLDVPGRVSITG 326 Query 302 FDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPP 358 FDG+ EAL GLTTV QP KG RAG LL+ SG+ +E+L+TELVRG TA P Sbjct 327 FDGIEEALREGLTTVRQPQEDKGRRAGALLMSGSDSGVTTVEMLETELVRGHTAASP 383 >gi|256374501|ref|YP_003098161.1| LacI family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918804|gb|ACU34315.1| transcriptional regulator, LacI family [Actinosynnema mirum DSM 43827] Length=367 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 202/353 (58%), Positives = 244/353 (70%), Gaps = 4/353 (1%) Query 6 RRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTR 65 RR ATLASLAAEL VSRTTVSNA+NRPDQLS +LR RVL TA+RLGY GPDPVARSLRTR Sbjct 8 RRPATLASLAAELGVSRTTVSNAYNRPDQLSPELRRRVLETARRLGYPGPDPVARSLRTR 67 Query 66 KAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLG 125 KAGAVGL++ E L+Y F DPAA F+ G+A +CE GQGL LV R + AAV Sbjct 68 KAGAVGLLLTENLSYAFRDPAAIGFLEGLALACETAGQGLLLVPANPER---EDVAAVHR 124 Query 126 AGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLG 185 AGVDGFVVYSV DDDP+L VL+R +P VV DQP DL+ V RVGIDDRAAM +LA +++ Sbjct 125 AGVDGFVVYSVPDDDPHLAAVLERPVPTVVCDQP-DLADVDRVGIDDRAAMHQLAQHLIA 183 Query 186 LGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVE 245 LGHR +G++ MRL RDR V R S F VQR R+ G+ +A T GVD S+ VVE Sbjct 184 LGHRRVGVVCMRLARDRNDGFVPLSRQESAHFHVQRSRMSGLRQAFTEVGVDWASVPVVE 243 Query 246 SYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGV 305 ++H G +AA L +P++TAL+CT+DILAL A+ G+ VP +TVTGFDG+ Sbjct 244 RFDHTIAQGASAAAQVLDRDPQITALICTSDILALGALQEAERRGLRVPADLTVTGFDGI 303 Query 306 PEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPP 358 EA GLTTV QP L KG AG+LL++ P L+TEL+ G TA P Sbjct 304 REAEQAGLTTVRQPVLEKGRAAGKLLMEIGERTKPRTVTLETELITGTTAAEP 356 >gi|257057484|ref|YP_003135316.1| transcriptional regulator, LacI family [Saccharomonospora viridis DSM 43017] gi|256587356|gb|ACU98489.1| transcriptional regulator, LacI family [Saccharomonospora viridis DSM 43017] Length=366 Score = 352 bits (902), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 194/353 (55%), Positives = 243/353 (69%), Gaps = 4/353 (1%) Query 6 RRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTR 65 RR+ATLASLAAEL VSRTTVSNA+NRPDQLS +LR RVL TA+RLGY GPDPVARSLRTR Sbjct 8 RRQATLASLAAELGVSRTTVSNAYNRPDQLSPELRRRVLETARRLGYPGPDPVARSLRTR 67 Query 66 KAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLG 125 KAGAVGL++ E L+Y F DPAA + G+A +CE+ G GL LV R + AAV Sbjct 68 KAGAVGLLLTENLSYAFRDPAAVGVLEGLALACEKAGVGLHLVPASPGR---EEVAAVHR 124 Query 126 AGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLG 185 AGVDGFVVYSV DDDP+L+ VL R +P V++DQP+ L V RV DD A+ +A +V+G Sbjct 125 AGVDGFVVYSVPDDDPHLEAVLSRPVPTVIIDQPQ-LDNVDRVAPDDEDAIVRVANHVVG 183 Query 186 LGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVE 245 LGHR++G+L MRL RDR V ER + + VQR R+ + + AAGVD +++ VVE Sbjct 184 LGHRQIGVLCMRLARDRNDGFVPLERQQQARYHVQRARLAALAKTFEAAGVDWNTVPVVE 243 Query 246 SYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGV 305 + H G TAA+ L A+PR+TA++CT+DILAL A+ G+ VP +T+TGFDG+ Sbjct 244 RFNHTVDDGATAARQLLDAHPRVTAIICTSDILALGALAEAGRRGLRVPADLTITGFDGI 303 Query 306 PEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPP 358 EA GLTTV QP L KG AG+LLL+ P + L TEL G T+ PP Sbjct 304 AEASRAGLTTVHQPVLEKGKAAGKLLLEANERVEPKVITLPTELRIGTTSAPP 356 >gi|302530745|ref|ZP_07283087.1| transcriptional regulatory protein [Streptomyces sp. AA4] gi|302439640|gb|EFL11456.1| transcriptional regulatory protein [Streptomyces sp. AA4] Length=366 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 199/353 (57%), Positives = 247/353 (70%), Gaps = 4/353 (1%) Query 6 RRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTR 65 RR+ATLASLAAEL VSRTTVSNA+NRPDQLS +LR RVL TA+RLGY GPDPVARSLRTR Sbjct 8 RRQATLASLAAELGVSRTTVSNAYNRPDQLSPELRRRVLETARRLGYPGPDPVARSLRTR 67 Query 66 KAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLG 125 KAGAVGL++ E L+Y F DPAA + G+A +CE+ G GL LV R + AAV Sbjct 68 KAGAVGLLLTENLSYAFRDPAAVGVLEGLALACEDAGVGLHLVPASPGR---EDLAAVHR 124 Query 126 AGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLG 185 AGVDGFVVYSV DDDP+L VL+R +P V++DQP+ + GV RVG DD AA+ +LA +++ Sbjct 125 AGVDGFVVYSVPDDDPHLAAVLERPVPTVIIDQPR-IEGVDRVGPDDAAAVTQLADHLVA 183 Query 186 LGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVE 245 LGHR++G+L MRLGR+R D V AER F VQR R+ + A ++AGVD ++ VVE Sbjct 184 LGHRQIGVLCMRLGRERNDDFVTAERQSGAHFHVQRTRLEALATAFSSAGVDWATVPVVE 243 Query 246 SYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGV 305 ++H G +AA+ L A P++TAL+CT+DILAL A+ G+ VP +TVTGFDG+ Sbjct 244 RFDHTVDDGASAARQLLDAYPQVTALVCTSDILALGALAEAARRGLRVPLDLTVTGFDGI 303 Query 306 PEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPP 358 EA GLTTV QP L KG AG LLL P + L TEL GRT+ PP Sbjct 304 AEAERSGLTTVHQPVLEKGKVAGRLLLSSAERVGPKVITLPTELRVGRTSAPP 356 >gi|325000171|ref|ZP_08121283.1| LacI family transcriptional regulator [Pseudonocardia sp. P1] Length=367 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 194/349 (56%), Positives = 234/349 (68%), Gaps = 3/349 (0%) Query 6 RRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTR 65 RR ATLASLAAEL VSRTTVSNA+NRPDQLSA LRERVL A+RLGY GPDPVARSLRTR Sbjct 8 RRPATLASLAAELGVSRTTVSNAYNRPDQLSAPLRERVLEAARRLGYPGPDPVARSLRTR 67 Query 66 KAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLG 125 +AGAVGL++ E L+Y F DP A F+ G+A +CE+ G GL LV V S D AV Sbjct 68 RAGAVGLLLTEALSYAFRDPGATGFLEGLALACEKAGTGLLLVPVSPEHSDVD---AVFQ 124 Query 126 AGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLG 185 AGVDGFVVYSV +DDP+ + VLQR +P VV DQP D+ GV RVG+DDRA L +++ Sbjct 125 AGVDGFVVYSVSEDDPHFRAVLQRPVPTVVCDQPADVEGVDRVGVDDRAGTLALGRHLVE 184 Query 186 LGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVE 245 LGHR +G+L MRLG R D R + ++ VQRER+ G+ A AGVD + V+E Sbjct 185 LGHRRIGVLCMRLGSRRHDGPADQARQETGSYSVQRERLAGLRAAFAEAGVDWAGVPVIE 244 Query 246 SYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGV 305 YEH +G A L A+P +TAL+CT+DILAL A+ R G+ VP ++V GFDGV Sbjct 245 RYEHTLEAGADGAATLLDAHPGITALVCTSDILALGALGEARERGLRVPEDLSVAGFDGV 304 Query 306 PEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRT 354 PEA GLTTV QP KG AG LLL+ + VL TEL+ G T Sbjct 305 PEAERAGLTTVRQPFREKGREAGRLLLERGDRNVSEHVVLPTELIVGST 353 >gi|134097068|ref|YP_001102729.1| LacI family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909691|emb|CAL99803.1| transcriptional regulatory protein (probably LacI-family) [Saccharopolyspora erythraea NRRL 2338] Length=366 Score = 346 bits (888), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 188/357 (53%), Positives = 246/357 (69%), Gaps = 4/357 (1%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 S RR ATLASLAAEL VSRTTVSNA+NRPDQLS +LR+RVL TA+RLGY GPDPVARS Sbjct 4 STNARRPATLASLAAELGVSRTTVSNAYNRPDQLSPELRKRVLDTARRLGYPGPDPVARS 63 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTRKAGAVGL++ E L+Y F DP A F+ G++ +CE+ G GL L+ R + A Sbjct 64 LRTRKAGAVGLLLTENLSYAFRDPGAISFLEGLSLACEDAGHGLLLIPASPER---EDVA 120 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 +V AGVDGFVVYSV +DDP+L VL+R +PVVV DQP+ L + VG DD A++ +A Sbjct 121 SVHRAGVDGFVVYSVPEDDPHLAAVLERPVPVVVCDQPR-LDNLDWVGPDDARAIKSMAD 179 Query 182 YVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSL 241 +++ LGHR +G+ MRL R R L +R + +F VQ+ R+ + E+ + AGVD + Sbjct 180 HLIKLGHRRIGVSCMRLARGRNDGLASVQRQANASFHVQKSRLTALAESFSEAGVDWTKV 239 Query 242 TVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTG 301 VVE ++H SG +AA+ L +P +TA++CT+DILAL A++ R+ G+ VP +TVTG Sbjct 240 PVVERFDHTAASGASAARQLLDLDPDITAIVCTSDILALGALNEARSRGLRVPEDLTVTG 299 Query 302 FDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPP 358 FDG+ +A GLTTV QP L KG AG LLL+ G P VL+T+L+ G TA PP Sbjct 300 FDGIADAERAGLTTVRQPVLEKGRAAGRLLLETSEPGRPREVVLETQLITGTTAAPP 356 >gi|331699810|ref|YP_004336049.1| LacI family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954499|gb|AEA28196.1| transcriptional regulator, LacI family [Pseudonocardia dioxanivorans CB1190] Length=365 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 195/357 (55%), Positives = 236/357 (67%), Gaps = 3/357 (0%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 P RR ATLASLAAEL VSRTTVSNA+NRPDQLSA LR RVL A+RLGY GPDPVARS Sbjct 3 QPNARRPATLASLAAELGVSRTTVSNAYNRPDQLSATLRARVLEAARRLGYPGPDPVARS 62 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTR+AGAVGL++ E L+Y F DP A F+ G+A +CE+ GQGL L+ V S+ Sbjct 63 LRTRRAGAVGLLLTEALSYAFRDPVATGFLEGLALACEQAGQGLLLIPVSPSQP---DVT 119 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 V AGVDGFVVYSV +DDP+ VL+R +P VV DQP + GV RVGIDDRAAM +A Sbjct 120 TVHQAGVDGFVVYSVREDDPHFLAVLERPVPTVVCDQPVGIDGVDRVGIDDRAAMLGMAR 179 Query 182 YVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSL 241 ++ GLGHR +G+L MRL D R + ++ VQR R+ G+ E G+D + Sbjct 180 HLTGLGHRRIGVLCMRLAPQPNDGPADLARQGATSYPVQRARLGGLREGFAEVGIDWADV 239 Query 242 TVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTG 301 V E ++H +G +AA L ANP +TAL CT+DILAL A+ + A G+ VP +TVTG Sbjct 240 PVHERFDHSVDAGESAAAELLAANPGITALACTSDILALGALRHATARGLSVPEDLTVTG 299 Query 302 FDGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPP 358 FDGVPEA GLTTV QP KG AGELLL+ P VL TELV G T+ P Sbjct 300 FDGVPEAERAGLTTVRQPVREKGQVAGELLLERGERNRPRQVVLPTELVVGHTSKGP 356 >gi|333918328|ref|YP_004491909.1| LacI family transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] gi|333480549|gb|AEF39109.1| Transcriptional regulator, LacI family [Amycolicicoccus subflavus DQS3-9A1] Length=351 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 192/347 (56%), Positives = 234/347 (68%), Gaps = 4/347 (1%) Query 11 LASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTRKAGAV 70 +ASLAAELKVSRTTVSNA+NRPDQLS +LRERVLA AK +GY GPDPVARSLRTRKA V Sbjct 1 MASLAAELKVSRTTVSNAYNRPDQLSPELRERVLAAAKEIGYPGPDPVARSLRTRKADTV 60 Query 71 GLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLGAGVDG 130 GL++ +PL+Y F DPAA +FVAG+A +C+ G+ L +V G R + AAV AGVDG Sbjct 61 GLLLDQPLSYSFRDPAAVEFVAGLADACDSAGKSLLIVPAGPDRDDSQAAAAVQRAGVDG 120 Query 131 FVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLGLGHRE 190 FVVYSV DDPYL L+R+LPVVV DQP + G SRVGIDD AMRELA V GHR Sbjct 121 FVVYSVSVDDPYLAAALERQLPVVVCDQPVGIPGTSRVGIDDYCAMRELADAVFAAGHRR 180 Query 191 LGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVESYEHL 250 +G++ MRLG D R + V ER + VQ RI + +A AG + +T+ E H Sbjct 181 IGVICMRLGPDDRDEFVGRERALTSPLPVQNARIRAILDAADMAGAE---VTIAERSAHS 237 Query 251 PTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGVPEALS 310 +G AA +A P +TA+MCT D+LAL A+ Y GI VP ++VTGFDG+ EA Sbjct 238 RDAGQQAAHELRRAVPSITAVMCTTDVLALGALAYAADDGIGVPRTLSVTGFDGIREARR 297 Query 311 RGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGP 357 GLTTVAQP+ KG RAGELLL L +E++ TEL+ G T GP Sbjct 298 AGLTTVAQPAALKGRRAGELLLAYSPDRL-AVEMVPTELLLGATLGP 343 >gi|300790505|ref|YP_003770796.1| LacI family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299800019|gb|ADJ50394.1| LacI family transcriptional regulator [Amycolatopsis mediterranei U32] gi|340532190|gb|AEK47395.1| LacI family transcriptional regulator [Amycolatopsis mediterranei S699] Length=345 Score = 329 bits (843), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 183/339 (54%), Positives = 229/339 (68%), Gaps = 4/339 (1%) Query 20 VSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTRKAGAVGLVMAEPLT 79 +SRTTVSNA+NRPDQLS +LR RVL TA+RLGY GPDPVARSLRTRKAGAVGL++ E L+ Sbjct 1 MSRTTVSNAYNRPDQLSPELRRRVLETARRLGYPGPDPVARSLRTRKAGAVGLLLTENLS 60 Query 80 YFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLGAGVDGFVVYSVGDD 139 Y F DPAA + G+A +CE+ G GL LV R + AAV AGVDGFVVYSV DD Sbjct 61 YAFRDPAAVGVLEGLALACEDAGVGLHLVPASPGR---EDVAAVHRAGVDGFVVYSVPDD 117 Query 140 DPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLGLGHRELGLLTMRLG 199 DP+L VL+R +P V++DQP L G+ RVG DD AA+ ++A +++ LGHR++G++ MRL Sbjct 118 DPHLAAVLERPVPTVIIDQPS-LEGIDRVGPDDAAAVGKIAEHLVTLGHRQVGVICMRLA 176 Query 200 RDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVESYEHLPTSGGTAAK 259 R+R D V A R F VQR R+ + A +AAGVD + VVE ++H G +AA+ Sbjct 177 RERNDDFVSATRQSGAHFHVQRTRLEALAVAFSAAGVDWAGVPVVERFDHTVDDGASAAR 236 Query 260 VALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGVPEALSRGLTTVAQP 319 L A P++TA++CT+DILAL AM G+ VP +TVTGFDG+ EA GLTTV QP Sbjct 237 QLLDAYPQITAVICTSDILALGAMAEAERRGLRVPQDLTVTGFDGIAEAERIGLTTVHQP 296 Query 320 SLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPP 358 L KG AG LLL P L TEL GRT+ PP Sbjct 297 VLEKGKMAGRLLLSSGERSAPKTITLPTELRVGRTSAPP 335 >gi|291006991|ref|ZP_06564964.1| LacI family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length=340 Score = 318 bits (816), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 169/334 (51%), Positives = 228/334 (69%), Gaps = 4/334 (1%) Query 25 VSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTRKAGAVGLVMAEPLTYFFSD 84 +SNA+NRPDQLS +LR+RVL TA+RLGY GPDPVARSLRTRKAGAVGL++ E L+Y F D Sbjct 1 MSNAYNRPDQLSPELRKRVLDTARRLGYPGPDPVARSLRTRKAGAVGLLLTENLSYAFRD 60 Query 85 PAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLGAGVDGFVVYSVGDDDPYLQ 144 P A F+ G++ +CE+ G GL L+ R + A+V AGVDGFVVYSV +DDP+L Sbjct 61 PGAISFLEGLSLACEDAGHGLLLIPASPER---EDVASVHRAGVDGFVVYSVPEDDPHLA 117 Query 145 VVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLGLGHRELGLLTMRLGRDRRQ 204 VL+R +PVVV DQP+ L + VG DD A++ +A +++ LGHR +G+ MRL R R Sbjct 118 AVLERPVPVVVCDQPR-LDNLDWVGPDDARAIKSMADHLIKLGHRRIGVSCMRLARGRND 176 Query 205 DLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVESYEHLPTSGGTAAKVALQA 264 L +R + +F VQ+ R+ + E+ + AGVD + VVE ++H SG +AA+ L Sbjct 177 GLASVQRQANASFHVQKSRLTALAESFSEAGVDWTKVPVVERFDHTAASGASAARQLLDL 236 Query 265 NPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGVPEALSRGLTTVAQPSLHKG 324 +P +TA++CT+DILAL A++ R+ G+ VP +TVTGFDG+ +A GLTTV QP L KG Sbjct 237 DPDITAIVCTSDILALGALNEARSRGLRVPEDLTVTGFDGIADAERAGLTTVRQPVLEKG 296 Query 325 HRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPP 358 AG LLL+ G P VL+T+L+ G TA PP Sbjct 297 RAAGRLLLETSEPGRPREVVLETQLITGTTAAPP 330 >gi|258655026|ref|YP_003204182.1| LacI family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558251|gb|ACV81193.1| transcriptional regulator, LacI family [Nakamurella multipartita DSM 44233] Length=358 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 180/350 (52%), Positives = 230/350 (66%), Gaps = 4/350 (1%) Query 9 ATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTRKAG 68 ATLASLAAEL VSRTTVSNA+NRPDQLS LR RV+ A+R+GY GPDP+ARSLRTRKAG Sbjct 11 ATLASLAAELGVSRTTVSNAYNRPDQLSPQLRSRVMEAARRMGYPGPDPMARSLRTRKAG 70 Query 69 AVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLGAGV 128 AVGL++AE +Y DP A F+ G+ C+E GL LV +R ++ A V A V Sbjct 71 AVGLLLAEQASYAIRDPGAVAFLEGLTLECDEAQVGLLLVP---ARPGSEDIAGVTRAAV 127 Query 129 DGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLGLGH 188 DGFVVYS+ DDDP+L L R +P V+ DQP +SG VGIDD+AA+R++A ++L LGH Sbjct 128 DGFVVYSMPDDDPHLTAALARPVPSVICDQPS-ISGTDSVGIDDKAAIRQVAEHLLSLGH 186 Query 189 RELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVESYE 248 +G++ MRLGR R V ER +S + VQR R++G+ +A AAGV D + VVE +E Sbjct 187 HRIGVICMRLGRARMDGPVPIERQQSARYHVQRNRLLGLRDACNAAGVAWDRIPVVERFE 246 Query 249 HLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGVPEA 308 H +G +AA L +P +TAL+ T+D+LAL A+ L VP ++VTGFDGV A Sbjct 247 HTVEAGQSAAAEVLALDPGITALIATSDVLALGAITELTRRHQRVPEDVSVTGFDGVKTA 306 Query 309 LSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPP 358 + GLTTV QP + KG AG +LL P R VL T + GRT PP Sbjct 307 VDFGLTTVEQPVVDKGRNAGRMLLSPARKAAGRRIVLPTRFLPGRTTAPP 356 >gi|172041341|ref|YP_001801055.1| LacI family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171852645|emb|CAQ05621.1| putative transcriptional regulator (LacI family) [Corynebacterium urealyticum DSM 7109] Length=376 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 165/357 (47%), Positives = 234/357 (66%), Gaps = 4/357 (1%) Query 5 PRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRT 64 P RR TLAS+AAEL VSRTTVSNA+NRP QLS +LR ++L TA+++GY GPDP+ARSLR Sbjct 4 PARRGTLASIAAELGVSRTTVSNAYNRPGQLSEELRTKILQTAEKMGYPGPDPIARSLRI 63 Query 65 RKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVL 124 ++AGAVG+++ E LTY F D A+ +F++GV+Q+C E+G + L+ G D TA + Sbjct 64 QRAGAVGVLLTEELTYAFDDQASVEFMSGVSQACGEMGVSMLLIPAGVQSDGKDATALIN 123 Query 125 GAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVL 184 A VDGF+VYSV D+DPYL+ + R PVV+ DQP G+ VGIDDR A++ + ++ Sbjct 124 QAAVDGFIVYSVADEDPYLEAAISRGRPVVICDQPAGREGLRFVGIDDREAIKPVVRRLV 183 Query 185 GLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVV 244 GHR++G+L +RL R+ V ERL +VQR+R+ G E + AG+D S+ +V Sbjct 184 DAGHRKIGILCIRLDREPNNGPVSQERLAGARMNVQRDRVAGALEILAEAGIDTASVPLV 243 Query 245 ESYEHLPTSGGT--AAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGF 302 E H+ +G T AA+ L+ NP LTA++CT D +AL + Y + GI VPG ++VTGF Sbjct 244 E--RHINDAGTTEDAARELLENNPDLTAVVCTTDSMALGLLRYADSVGIDVPGDLSVTGF 301 Query 303 DGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 DG+P+A + G+ TV QPS KG +GE L + R+ + + R ++ PPA Sbjct 302 DGIPQAEAEGIVTVRQPSRTKGRLSGEHLAEEIRARRKAAKNRKSAPSRAQSETPPA 358 >gi|340793485|ref|YP_004758948.1| LacI DNA-binding transcription regulator [Corynebacterium variabile DSM 44702] gi|340533395|gb|AEK35875.1| LacI DNA-binding transcription regulator [Corynebacterium variabile DSM 44702] Length=391 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 155/326 (48%), Positives = 221/326 (68%), Gaps = 1/326 (0%) Query 7 RRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTRK 66 RR TLAS+AAEL VSRTTVSNA+NRP+QLSADLRE++L TA+ +GYAGPDP+ARSLRTR Sbjct 18 RRGTLASIAAELGVSRTTVSNAYNRPEQLSADLREKILRTAEAMGYAGPDPMARSLRTRH 77 Query 67 AGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLG- 125 AGA+G+++ + +TY F D A+ +F++G++++C + + L+ G+ S D A+++ Sbjct 78 AGAIGVLLTDDMTYAFEDQASLEFMSGISEACVGMDTSMLLIPAGAETSEEDRPASLVNQ 137 Query 126 AGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLG 185 A VDGF+VYSV DDP+L V R +P V+ DQP D GV+ VGIDD A+R A ++ Sbjct 138 AVVDGFIVYSVASDDPFLASVTARDIPTVICDQPADDHGVNFVGIDDARAIRPAAQTLVD 197 Query 186 LGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVE 245 GH +G+L +RL R V AERL VQR+R+ G + + AG+D ++ V+E Sbjct 198 AGHTRIGILCIRLDRVPNNGPVSAERLAGAHLHVQRDRVTGALDVLEDAGIDRSTVPVIE 257 Query 246 SYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGV 305 + + P + +AA ++ +P LTA++CT D +AL +DY GI VP ++VTGFDG+ Sbjct 258 RHLNTPETSASAAAELMENHPDLTAVICTTDSMALGVLDYAERMGINVPDDVSVTGFDGI 317 Query 306 PEALSRGLTTVAQPSLHKGHRAGELL 331 P AL RGL+TV QP+ KG +G +L Sbjct 318 PRALDRGLSTVVQPNREKGFTSGNVL 343 >gi|336324800|ref|YP_004604766.1| LacI DNA-binding transcription regulator [Corynebacterium resistens DSM 45100] gi|336100782|gb|AEI08602.1| LacI DNA-binding transcription regulator [Corynebacterium resistens DSM 45100] Length=382 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 161/337 (48%), Positives = 222/337 (66%), Gaps = 14/337 (4%) Query 7 RRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTRK 66 RR TLAS+AAE+ VSRTTVSNA+NRPDQLS +LRE++LATA+R+GY GPDP ARSLR R+ Sbjct 7 RRGTLASIAAEIGVSRTTVSNAYNRPDQLSPELREKILATAERVGYPGPDPTARSLRMRR 66 Query 67 AGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAA---- 122 AGA+G+++ E +TY F D A+ +F+AGVA +C L + ++ G D TAA Sbjct 67 AGAIGVLLTEDMTYAFEDQASVEFMAGVAAACGSLNSSMLVLPAGVGAPTTDETAAATRA 126 Query 123 ---VLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSR-----VGIDDRA 174 V A VDGF+VYSV DDP+L VL R LP V+ DQP ++ S+ VGI+DR Sbjct 127 TQLVNQASVDGFIVYSVAADDPHLAAVLARGLPTVICDQP--IAPASKGEFGFVGINDRE 184 Query 175 AMRELAGYVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAA 234 A++ A V+ GH +G+L +RL R V ERL VQR R+ GV + ++ A Sbjct 185 AIKPAARAVVEAGHTRIGILCIRLDRTPNDGPVSPERLAKAQMHVQRSRVQGVLDVISDA 244 Query 235 GVDPDSLTVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVP 294 +DP + VVE + + + AA+ L ++P LTA++CT D +AL ++Y R GI +P Sbjct 245 TLDPTQVPVVERHINNRETAKDAARELLTSHPELTAIVCTTDSMALGVVEYAREQGIEIP 304 Query 295 GQMTVTGFDGVPEALSRGLTTVAQPSLHKGHRAGELL 331 Q++VTGFDG+PEA++ G+TTV QP+ HKG +GE+L Sbjct 305 SQLSVTGFDGIPEAVNEGITTVRQPTQHKGRESGEML 341 >gi|68535394|ref|YP_250099.1| LacI family transcriptional regulator [Corynebacterium jeikeium K411] gi|68262993|emb|CAI36481.1| putative transcriptional regulator (LacI family) [Corynebacterium jeikeium K411] Length=369 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 168/369 (46%), Positives = 228/369 (62%), Gaps = 19/369 (5%) Query 5 PRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRT 64 P RR TLAS+AAEL VSRTTVSNA+NRPDQLS +LR+++L A +LGY GPDP+ARSLRT Sbjct 4 PARRGTLASIAAELGVSRTTVSNAYNRPDQLSPELRDKILHVAAKLGYPGPDPMARSLRT 63 Query 65 RKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVG-SSRSLADGTAAV 123 R+AGA+G+++ E L Y F D A+ +FV+GV+ SC + + L+ G AD A + Sbjct 64 RRAGAIGVLLTEELPYAFEDQASLEFVSGVSVSCGAMDASMLLIPAGVDDNPSADRPAQL 123 Query 124 LG-AGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGY 182 + A VDGF+VYSV DDPYL V R LP VV DQP +G VGIDDR A++ Sbjct 124 VNQASVDGFIVYSVAGDDPYLAAVRNRGLPTVVCDQPAG-AGDPFVGIDDREAIKPAIRT 182 Query 183 VLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLT 242 ++ GH +G+L +RL R V AER+ VQR R++G+ + + AG+ + Sbjct 183 LVDAGHTRIGVLCIRLDRTPNNGPVSAERIEGAHMHVQRSRLLGILDVLEEAGI--EQAP 240 Query 243 VVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGF 302 +VE + + P + AA+ L +P LTA+ CT D AL + Y GI VPGQ++VTGF Sbjct 241 IVERHINNPQTAFDAAQELLSTHPELTAVACTTDSQALGVVRYAAEQGIDVPGQLSVTGF 300 Query 303 DGVPEALSRGLTTVAQPSLHKGHRAGELL------------LKPP-RSGLPVIEVLDTEL 349 DG+PEA+ +TTV QPS KG +G +L KP R+ P + +L+TEL Sbjct 301 DGIPEAIDAHITTVRQPSKDKGLESGNMLAELIEQRLNDNPAKPAHRAETPTV-LLETEL 359 Query 350 VRGRTAGPP 358 +RG + PP Sbjct 360 IRGTSVAPP 368 >gi|213965084|ref|ZP_03393282.1| transcriptional regulator, LacI family [Corynebacterium amycolatum SK46] gi|213952198|gb|EEB63582.1| transcriptional regulator, LacI family [Corynebacterium amycolatum SK46] Length=368 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 158/359 (45%), Positives = 218/359 (61%), Gaps = 5/359 (1%) Query 6 RRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTR 65 RRR TLAS+AAEL VSRTTVSNA+NRPDQLS LRE +L TA+RLGY GPDP+AR LR R Sbjct 5 RRRGTLASIAAELGVSRTTVSNAYNRPDQLSEKLREHILETAERLGYPGPDPMARGLRMR 64 Query 66 KAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLG 125 + GA+G++ E L + F DPA+ DF+AG+A+ E+G + ++ S + Sbjct 65 RVGAIGVLFTEHLPFAFEDPASVDFLAGLAEELGEMGDSMLVIPASSEEGGDVDLNLIRQ 124 Query 126 AGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLG 185 A VDGFVVYSV D+DP+L V R LP VV DQP D + + VGIDDR A++ ++ Sbjct 125 AVVDGFVVYSVADNDPFLAAVRARGLPTVVCDQPADAAALPFVGIDDREAIKPAVRHLTE 184 Query 186 LGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVE 245 LGHR++G+L++RL R V +RL VQ+ R+ G EA+ G+ + ++E Sbjct 185 LGHRKVGILSVRLSRTPNSGYVTEKRLAEAHHQVQKNRVEGALEALAEVGIQQADVPIIE 244 Query 246 SYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGV 305 + + + AA+ L NP LTA++CT D A++ ++Y + +GI VP +++TGFDG+ Sbjct 245 RHLNDRENNRDAARQLLTDNPDLTAVVCTTDTQAIAVLEYAKENGIRVPEDLSITGFDGI 304 Query 306 PEALSRGLTTVAQPSLHKGHRAG-----ELLLKPPRSGLPVIEVLDTELVRGRTAGPPA 359 AL LTTV QP+ KG G EL SG +L+TE V G T P+ Sbjct 305 ERALFHNLTTVIQPNRQKGIAVGRALAEELEATHEDSGRAPRVLLETEFVVGTTTAAPS 363 >gi|260578379|ref|ZP_05846293.1| LacI family transcriptional regulator [Corynebacterium jeikeium ATCC 43734] gi|258603401|gb|EEW16664.1| LacI family transcriptional regulator [Corynebacterium jeikeium ATCC 43734] Length=422 Score = 285 bits (728), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 165/368 (45%), Positives = 223/368 (61%), Gaps = 17/368 (4%) Query 5 PRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRT 64 P RR TLAS+AAEL VSRTTVSNA+NRPDQLS +LR+++L A ++GY GPDP+ARSLRT Sbjct 57 PARRGTLASIAAELGVSRTTVSNAYNRPDQLSPELRDKILHVAAKVGYPGPDPMARSLRT 116 Query 65 RKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVG-SSRSLADGTAAV 123 R+AGA+G+++ E L Y F D A+ +FV+GV+ SC + + L+ G AD A + Sbjct 117 RRAGAIGVLLTEELPYAFEDQASLEFVSGVSVSCGAMDASMLLIPAGVDDNPTADRPAQL 176 Query 124 LG-AGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGY 182 + A VDGF+VYSV DDPYL V R LP VV DQP + G VGIDDR A++ Sbjct 177 VNQASVDGFIVYSVAADDPYLAAVRNRGLPTVVCDQPAGV-GDPFVGIDDREAIKPAIRE 235 Query 183 VLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLT 242 ++ GHR +G+L +RL R V ER++ VQR R++GV + + AG+ Sbjct 236 LVDAGHRHIGVLCIRLDRTPNNGPVSDERIQGAHMHVQRSRVLGVLDVLEEAGI--SQTP 293 Query 243 VVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGF 302 +VE + + P + AA+ L +P LTA+ CT D AL M Y GI VPGQ++VTGF Sbjct 294 IVERHINNPQTAFEAAQELLTNHPELTAVACTTDSQALGVMRYAAEQGIDVPGQLSVTGF 353 Query 303 DGVPEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIE------------VLDTELV 350 DG+PEA+ +TTV QPS KG +G +L + L +L+TEL+ Sbjct 354 DGIPEAIDAHITTVRQPSKDKGLESGNMLAELIEQRLSENPAKPARRAAAPSVLLETELI 413 Query 351 RGRTAGPP 358 RG + P Sbjct 414 RGTSVAAP 421 >gi|311740185|ref|ZP_07714017.1| LacI family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304740|gb|EFQ80811.1| LacI family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] Length=369 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 174/365 (48%), Positives = 227/365 (63%), Gaps = 13/365 (3%) Query 2 SPTPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARS 61 SPT R TLASLAAEL VSRTTVSNA++RPDQLSA RER+LA AK GY GPDP ARS Sbjct 9 SPT---RKTLASLAAELGVSRTTVSNAYSRPDQLSAATRERILAAAKARGYPGPDPTARS 65 Query 62 LRTRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTA 121 LRTR+AG+VG+++ E L+Y F D A+ DF+AG+A++ L L+ G A+ + Sbjct 66 LRTRRAGSVGVLLTEHLSYAFEDMASVDFLAGMAEASAGAQTTLTLIPAGPEGE-AEAAS 124 Query 122 AVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 V A VDGFVVYSV D YL+ R LPVVV DQP D SG+ VGIDDRAA+ A Sbjct 125 LVGSAAVDGFVVYSVAAGDAYLEAARGRGLPVVVCDQPTD-SGLPFVGIDDRAAIAPAAR 183 Query 182 YVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSL 241 ++ GHR++G+L +RL R+R + L+ VQR R++G + AG+ P+++ Sbjct 184 ALVEAGHRKIGVLAIRLKRERHDGPISWGELQGADMHVQRARVMGAMDVFAQAGIAPETV 243 Query 242 TVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTG 301 VV + + + AA++ L A+P LTA++CT D +AL M Y R GI VPG+++VTG Sbjct 244 PVVTQHINDAHTTRAAAQLLLDAHPDLTAVLCTTDSMALGVMTYARERGIDVPGELSVTG 303 Query 302 FDGVPEALSRGLTTVAQPSLHKGHRAGELLLK-------PPRSGLPVI-EVLDTELVRGR 353 FDG+ A GLTT+ QP+ KG AG +L K P S V+ VL T GR Sbjct 304 FDGIDAAQRLGLTTIVQPNKAKGAAAGHMLAKLIAGAEGPDPSETAVLRRVLQTSFAAGR 363 Query 354 TAGPP 358 T PP Sbjct 364 TVAPP 368 >gi|38234533|ref|NP_940300.1| LacI family transcriptional regulator [Corynebacterium diphtheriae NCTC 13129] gi|38200796|emb|CAE50500.1| Putative LacI-family transcriptional regulator [Corynebacterium diphtheriae] Length=379 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 169/365 (47%), Positives = 227/365 (63%), Gaps = 15/365 (4%) Query 7 RRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTRK 66 +R +LA+LAAEL VSRTTVSNA+N P QLSA+LRE++LATA+RLGY GPDP ARSLRTR+ Sbjct 11 QRPSLAALAAELGVSRTTVSNAYNHPQQLSAELREQILATAERLGYLGPDPTARSLRTRR 70 Query 67 AGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAA---V 123 G+VG++ + LTY F D A+ DF+AG+A++ + LV VG SL D TAA V Sbjct 71 VGSVGVLFTDHLTYAFEDLASVDFLAGMAEASAGSQTSMTLVPVGPD-SL-DPTAAKQLV 128 Query 124 LGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYV 183 A VDGFVVYSV DP+L+ V R LP VV DQP D +S VGIDD A+ A + Sbjct 129 NSAVVDGFVVYSVAKGDPFLEAVHARGLPAVVCDQPADDHRMSFVGIDDHTAIAPAAQAL 188 Query 184 LGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTV 243 + GHR +G+L +RL + V ERL+ VQR R+ G E AAG+ ++ + Sbjct 189 VDAGHRSIGILCIRLDSEPNNGPVSFERLKHAHHHVQRARVQGALEVFDAAGIPAGAVPI 248 Query 244 VESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFD 303 +E + + P + AA+ L A+P +TA++CT D +A ++Y + G+ VP ++VTGFD Sbjct 249 IERHINDPANNIDAARELLTAHPDVTAILCTTDTMAFGVLEYAKELGLRVPEDLSVTGFD 308 Query 304 GVPEALSRGLTTVAQPSLHKGHRAGELL---LKPPRSGLPVI-------EVLDTELVRGR 353 G+ AL+R LTTV QP+ KG RAG LL ++ + VI E+L T G Sbjct 309 GIAPALNRELTTVLQPNKIKGERAGTLLYSMIEEAQKNPNVISRGQLHREILATSFHPGA 368 Query 354 TAGPP 358 T PP Sbjct 369 TVVPP 373 >gi|145296626|ref|YP_001139447.1| hypothetical protein cgR_2534 [Corynebacterium glutamicum R] gi|140846546|dbj|BAF55545.1| hypothetical protein [Corynebacterium glutamicum R] Length=360 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 149/328 (46%), Positives = 212/328 (65%), Gaps = 0/328 (0%) Query 6 RRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTR 65 ++ TLAS+AA+L VSRTTVSNA+NRP+QLSA+LR+R+L TA+ +GY GPDPVARSLRTR Sbjct 7 QQYGTLASIAAKLGVSRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTR 66 Query 66 KAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLG 125 +AGA+G+++ E LTY F D A+ DF+AGVA++ + L S SS V Sbjct 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAEAAGDTQLTLIPASPASSVDHVSAQQLVNN 126 Query 126 AGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLG 185 A VDG V+YSV DP++ + R LP V+ DQP G+ + ++R A+ A ++ Sbjct 127 AAVDGVVIYSVAKGDPHINAIRARGLPAVIADQPAREEGLPFIAPNNRKAIAPAAQALID 186 Query 186 LGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVE 245 GHR++G+L++RL R V ERL + + VQR+R+ G E AG+DPD++ ++E Sbjct 187 AGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVGGAMEVFIEAGIDPDTVPIME 246 Query 246 SYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGV 305 + + AK L+ +P LTA++CT D LA ++YL++ G VP +++TGFDG Sbjct 247 CWINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKSVPADLSLTGFDGT 306 Query 306 PEALSRGLTTVAQPSLHKGHRAGELLLK 333 AL+R LTTV QP+ KG +AGE LLK Sbjct 307 HMALARDLTTVIQPNKLKGFKAGETLLK 334 >gi|334564031|ref|ZP_08517022.1| LacI family transcriptional regulator [Corynebacterium bovis DSM 20582] Length=355 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 175/363 (49%), Positives = 225/363 (62%), Gaps = 19/363 (5%) Query 4 TPRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLR 63 TPR TLASLAAEL VSRTTVSNA+NRPDQLS LR R+LA A+R GY GPDP ARSLR Sbjct 3 TPR---TLASLAAELGVSRTTVSNAYNRPDQLSESLRARILAAAERAGYPGPDPTARSLR 59 Query 64 TRKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAV 123 TR AGA+G+++ E LTY F D A+ +F++GV+ +C + LV G+ + DG AA Sbjct 60 TRHAGALGVLLTEDLTYAFEDQASLEFMSGVSVACSGRDTSMLLVPAGAE-TQGDGRAAA 118 Query 124 L--GAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 L A VDGF+VYSV DDP+L V R +P VV DQP D ++ VGIDDR A+R Sbjct 119 LVNQAAVDGFIVYSVAADDPFLAAVRGRGVPTVVCDQPADGHDLTFVGIDDREAVRPAVR 178 Query 182 YVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSL 241 ++ GHR +G+L +RL R+ V ERL + VQR R+ G + AAGV + Sbjct 179 ALVDAGHRRVGVLCIRLAREPNNGPVGPERLAAAQMHVQRSRVEGALAELAAAGV--VDV 236 Query 242 TVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTG 301 VVE + + P + AA+ L A+P LTA++CT D +AL +D G+ VPG ++VTG Sbjct 237 PVVERHINTPETARDAARELLDAHPDLTAVVCTTDSMALGVLDVAGERGLDVPGDLSVTG 296 Query 302 FDGVPEALSRGLTTVAQPSLHKGHRAGELLL------KPPRSGLPVIEVLDTELVRGRTA 355 FDG+P A++RG+TTV QPS KG +G L +PPR L L T GRT Sbjct 297 FDGIPRAVARGVTTVVQPSREKGLASGRALFALLDGEEPPRRRL-----LGTRFRPGRTV 351 Query 356 GPP 358 PP Sbjct 352 APP 354 >gi|25029067|ref|NP_739121.1| putative regulatory protein [Corynebacterium efficiens YS-314] gi|259505941|ref|ZP_05748843.1| LacI family transcriptional regulator [Corynebacterium efficiens YS-314] gi|23494354|dbj|BAC19321.1| putative regulatory protein [Corynebacterium efficiens YS-314] gi|259166422|gb|EEW50976.1| LacI family transcriptional regulator [Corynebacterium efficiens YS-314] Length=359 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 154/330 (47%), Positives = 220/330 (67%), Gaps = 5/330 (1%) Query 5 PRRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRT 64 P++ TLASLAA+L VSRTTVSNA+NRP+QLSA+LR+R+L TA+++GY GPDP+ARSLRT Sbjct 5 PQQTGTLASLAAKLGVSRTTVSNAYNRPEQLSAELRQRILDTAEKMGYPGPDPMARSLRT 64 Query 65 RKAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAA-- 122 R+AG++G+++ + L+Y F D A+ DF+AG+A++ G + + + S D T+A Sbjct 65 RRAGSIGVLLTDHLSYAFEDMASVDFLAGMAEAA--YGNTMLTLVPANPESSVDLTSAQQ 122 Query 123 -VLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAG 181 V + VDGFVVYSV DP+LQ V QR LPVV+ DQP D + VGI+DR A+ A Sbjct 123 LVSQSVVDGFVVYSVAKGDPHLQAVRQRGLPVVICDQPADEEDLPFVGIEDRLAIAPAAR 182 Query 182 YVLGLGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSL 241 ++ GHR +G+L++RL R+R V ERL + VQ+ R+ G + AAG++P + Sbjct 183 ALVAAGHRNIGILSIRLDRERNDGRVTRERLDNAHHHVQQSRVRGALDIFRAAGINPVDV 242 Query 242 TVVESYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTG 301 ++E + + AK L+A+P LTA++CT D LA ++Y+ + G VP ++VTG Sbjct 243 PIMECWLNDRPHNVATAKALLEAHPDLTAVLCTTDSLAFGVLEYMASIGKSVPEDLSVTG 302 Query 302 FDGVPEALSRGLTTVAQPSLHKGHRAGELL 331 FDG AL+R LTTV QP+ KG AG+LL Sbjct 303 FDGTQLALARHLTTVIQPNRQKGVEAGKLL 332 >gi|21325399|dbj|BAC00021.1| Transcriptional regulators [Corynebacterium glutamicum ATCC 13032] Length=358 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 154/353 (44%), Positives = 218/353 (62%), Gaps = 1/353 (0%) Query 6 RRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTR 65 ++ TLAS+AA+L +SRTTVSNA+NRP+QLSA+LR+R+L TA+ +GY GPDPVARSLRTR Sbjct 5 QQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTR 64 Query 66 KAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLG 125 +AGA+G+++ E LTY F D A+ DF+AGVAQ+ + L S SS V Sbjct 65 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNN 124 Query 126 AGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLG 185 A VDG V+YSV DP++ + R LP V+ DQP G+ + ++R A+ A ++ Sbjct 125 AAVDGVVIYSVAKGDPHIDAIRARGLPAVIADQPAREEGMPFIAPNNRKAIAPAAQALID 184 Query 186 LGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVE 245 GHR++G+L++RL R V ERL + + VQR+R+ G E AG+DP ++ ++E Sbjct 185 AGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIME 244 Query 246 SYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGV 305 + + AK L+ +P LTA++CT D LA ++YL++ G P +++TGFDG Sbjct 245 CWINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGT 304 Query 306 PEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEV-LDTELVRGRTAGP 357 AL+R LTTV QP+ KG +AGE LLK EV L+T G T P Sbjct 305 HMALARDLTTVIQPNKLKGFKAGETLLKMIDKEYVEPEVELETSFHPGSTVAP 357 >gi|19553826|ref|NP_601828.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62391466|ref|YP_226868.1| LacI family transcription regulator [Corynebacterium glutamicum ATCC 13032] gi|41326807|emb|CAF21289.1| Transcriptional regulator, LacI family [Corynebacterium glutamicum ATCC 13032] Length=360 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 154/353 (44%), Positives = 218/353 (62%), Gaps = 1/353 (0%) Query 6 RRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTR 65 ++ TLAS+AA+L +SRTTVSNA+NRP+QLSA+LR+R+L TA+ +GY GPDPVARSLRTR Sbjct 7 QQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTR 66 Query 66 KAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLG 125 +AGA+G+++ E LTY F D A+ DF+AGVAQ+ + L S SS V Sbjct 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNN 126 Query 126 AGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLG 185 A VDG V+YSV DP++ + R LP V+ DQP G+ + ++R A+ A ++ Sbjct 127 AAVDGVVIYSVAKGDPHIDAIRARGLPAVIADQPAREEGMPFIAPNNRKAIAPAAQALID 186 Query 186 LGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVE 245 GHR++G+L++RL R V ERL + + VQR+R+ G E AG+DP ++ ++E Sbjct 187 AGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIME 246 Query 246 SYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGV 305 + + AK L+ +P LTA++CT D LA ++YL++ G P +++TGFDG Sbjct 247 CWINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGT 306 Query 306 PEALSRGLTTVAQPSLHKGHRAGELLLKPPRSGLPVIEV-LDTELVRGRTAGP 357 AL+R LTTV QP+ KG +AGE LLK EV L+T G T P Sbjct 307 HMALARDLTTVIQPNKLKGFKAGETLLKMIDKEYVEPEVELETSFHPGSTVAP 359 >gi|229597996|pdb|3H5T|A Chain A, Crystal Structure Of A Transcriptional Regulator, Lacl Family Protein From Corynebacterium Glutamicum Length=366 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 147/328 (45%), Positives = 210/328 (65%), Gaps = 0/328 (0%) Query 6 RRRATLASLAAELKVSRTTVSNAFNRPDQLSADLRERVLATAKRLGYAGPDPVARSLRTR 65 ++ TLAS+AA+L +SRTTVSNA+NRP+QLSA+LR+R+L TA+ +GY GPDPVARSLRTR Sbjct 7 QQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTR 66 Query 66 KAGAVGLVMAEPLTYFFSDPAARDFVAGVAQSCEELGQGLQLVSVGSSRSLADGTAAVLG 125 +AGA+G+++ E LTY F D A+ DF+AGVAQ+ + L S SS V Sbjct 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNN 126 Query 126 AGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDLSGVSRVGIDDRAAMRELAGYVLG 185 A VDG V+YSV DP++ + R LP V+ DQP G+ + ++R A+ A ++ Sbjct 127 AAVDGVVIYSVAKGDPHIDAIRARGLPAVIADQPAREEGMPFIAPNNRKAIAPAAQALID 186 Query 186 LGHRELGLLTMRLGRDRRQDLVDAERLRSPTFDVQRERIVGVWEAMTAAGVDPDSLTVVE 245 GHR++G+L++RL R V ERL + + VQR+R+ G E AG+DP ++ ++E Sbjct 187 AGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIME 246 Query 246 SYEHLPTSGGTAAKVALQANPRLTALMCTADILALSAMDYLRAHGIYVPGQMTVTGFDGV 305 + + AK L+ +P LTA++CT D LA ++YL++ G P +++TGFDG Sbjct 247 CWINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGT 306 Query 306 PEALSRGLTTVAQPSLHKGHRAGELLLK 333 AL+R LTTV QP+ KG +AGE LLK Sbjct 307 HMALARDLTTVIQPNKLKGFKAGETLLK 334 Lambda K H 0.318 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 669804029900 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40