BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3579c Length=322 Score E Sequences producing significant alignments: (Bits) Value gi|15610715|ref|NP_218096.1| tRNA/rRNA methyltransferase [Mycoba... 632 2e-179 gi|340628545|ref|YP_004746997.1| putative tRNA/rRNA methyltransf... 630 8e-179 gi|121639499|ref|YP_979723.1| putative tRNA/rRNA methyltransfera... 630 9e-179 gi|167967116|ref|ZP_02549393.1| putative trna/rrna methyltransfe... 620 1e-175 gi|31794756|ref|NP_857249.1| putative tRNA/rRNA methyltransferas... 615 2e-174 gi|294993699|ref|ZP_06799390.1| putative tRNA/rRNA methyltransfe... 614 5e-174 gi|289571821|ref|ZP_06452048.1| conserved hypothetical protein [... 612 3e-173 gi|289445173|ref|ZP_06434917.1| tRNA/rRNA methyltransferase [Myc... 600 7e-170 gi|289752294|ref|ZP_06511672.1| tRNA/rRNA methyltransferase [Myc... 583 1e-164 gi|289759737|ref|ZP_06519115.1| tRNA/rRNA methyltransferase [Myc... 550 1e-154 gi|118465233|ref|YP_879854.1| RNA methyltransferase, TrmH family... 535 3e-150 gi|336458473|gb|EGO37446.1| rRNA methylase, putative, group 3 [M... 535 3e-150 gi|183985047|ref|YP_001853338.1| tRNA/rRNA methyltransferase [My... 534 7e-150 gi|296166634|ref|ZP_06849061.1| RNA methyltransferase [Mycobacte... 533 1e-149 gi|41406577|ref|NP_959413.1| hypothetical protein MAP0479 [Mycob... 532 3e-149 gi|118619334|ref|YP_907666.1| tRNA/rRNA methyltransferase [Mycob... 531 5e-149 gi|240172165|ref|ZP_04750824.1| tRNA/rRNA methyltransferase [Myc... 515 4e-144 gi|254801702|sp|B8ZUB0.2|Y324_MYCLB RecName: Full=Uncharacterize... 513 2e-143 gi|254822714|ref|ZP_05227715.1| RNA methyltransferase, TrmH fami... 504 8e-141 gi|342862417|ref|ZP_08719057.1| tRNA/rRNA methyltransferase [Myc... 503 1e-140 gi|15843192|ref|NP_338229.1| spoU rRNA methylase family protein ... 496 3e-138 gi|333992510|ref|YP_004525124.1| tRNA/rRNA methyltransferase [My... 477 1e-132 gi|15827088|ref|NP_301351.1| methyltransferase [Mycobacterium le... 460 1e-127 gi|120406285|ref|YP_956114.1| RNA methyltransferase [Mycobacteri... 456 2e-126 gi|169627675|ref|YP_001701324.1| putative tRNA/rRNA methyltransf... 453 2e-125 gi|145222039|ref|YP_001132717.1| RNA methyltransferase [Mycobact... 452 4e-125 gi|54022403|ref|YP_116645.1| putative tRNA/rRNA methyltransferas... 443 2e-122 gi|312138101|ref|YP_004005437.1| tRNA/rRNA methyltransferase [Rh... 440 2e-121 gi|325674995|ref|ZP_08154682.1| RNA methyltransferase [Rhodococc... 439 2e-121 gi|126437686|ref|YP_001073377.1| RNA methyltransferase [Mycobact... 432 5e-119 gi|108801699|ref|YP_641896.1| RNA methyltransferase TrmH, group ... 431 1e-118 gi|262200970|ref|YP_003272178.1| RNA methyltransferase, TrmH fam... 429 4e-118 gi|226304179|ref|YP_002764137.1| RNA methyltransferase [Rhodococ... 422 5e-116 gi|229494432|ref|ZP_04388195.1| RNA methyltransferase, TrmH fami... 421 7e-116 gi|319948866|ref|ZP_08022979.1| tRNA/rRNA methyltransferase [Die... 420 2e-115 gi|118473323|ref|YP_890295.1| RNA methyltransferase, TrmH family... 412 3e-113 gi|226363791|ref|YP_002781573.1| rRNA methyltransferase [Rhodoco... 405 4e-111 gi|343925929|ref|ZP_08765444.1| putative RNA methyltransferase [... 404 1e-110 gi|331699814|ref|YP_004336053.1| TrmH family RNA methyltransfera... 392 5e-107 gi|326383075|ref|ZP_08204764.1| RNA methyltransferase, TrmH fami... 391 8e-107 gi|296138340|ref|YP_003645583.1| TrmH family RNA methyltransfera... 387 1e-105 gi|336324793|ref|YP_004604759.1| putative RNA methyltransferase ... 387 2e-105 gi|68535387|ref|YP_250092.1| putative rRNA methylase [Corynebact... 380 1e-103 gi|333918034|ref|YP_004491615.1| putative tRNA/rRNA methyltransf... 380 2e-103 gi|300790491|ref|YP_003770782.1| RNA methyltransferase YjfH [Amy... 380 2e-103 gi|325000167|ref|ZP_08121279.1| putative tRNA/rRNA methyltransfe... 379 5e-103 gi|260578386|ref|ZP_05846300.1| TrmH family group 3 RNA methyltr... 379 5e-103 gi|340793476|ref|YP_004758939.1| hypothetical protein CVAR_0516 ... 371 1e-100 gi|25029071|ref|NP_739125.1| hypothetical protein CE2515 [Coryne... 370 1e-100 gi|302530721|ref|ZP_07283063.1| tRNA/rRNA methyltransferase [Str... 370 2e-100 >gi|15610715|ref|NP_218096.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Rv] gi|148663443|ref|YP_001284966.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148824785|ref|YP_001289539.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11] 51 more sequence titles Length=322 Score = 632 bits (1630), Expect = 2e-179, Method: Compositional matrix adjust. Identities = 322/322 (100%), Positives = 322/322 (100%), Gaps = 0/322 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP Sbjct 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 Query 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR Sbjct 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 Query 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS Sbjct 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 Query 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD Sbjct 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 Query 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL Sbjct 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 Query 301 AEIARQRRRPREPREQTQNRMI 322 AEIARQRRRPREPREQTQNRMI Sbjct 301 AEIARQRRRPREPREQTQNRMI 322 >gi|340628545|ref|YP_004746997.1| putative tRNA/rRNA methyltransferase [Mycobacterium canettii CIPT 140010059] gi|340006735|emb|CCC45923.1| putative tRNA/rRNA methyltransferase [Mycobacterium canettii CIPT 140010059] Length=322 Score = 630 bits (1625), Expect = 8e-179, Method: Compositional matrix adjust. Identities = 321/322 (99%), Positives = 321/322 (99%), Gaps = 0/322 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP Sbjct 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 Query 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR Sbjct 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 Query 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS Sbjct 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 Query 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD Sbjct 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 Query 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 AGGGTALDDVDG DSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL Sbjct 241 AGGGTALDDVDGADSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 Query 301 AEIARQRRRPREPREQTQNRMI 322 AEIARQRRRPREPREQTQNRMI Sbjct 301 AEIARQRRRPREPREQTQNRMI 322 >gi|121639499|ref|YP_979723.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991996|ref|YP_002646685.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|289572232|ref|ZP_06452459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85] 7 more sequence titles Length=322 Score = 630 bits (1625), Expect = 9e-179, Method: Compositional matrix adjust. Identities = 321/322 (99%), Positives = 321/322 (99%), Gaps = 0/322 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP Sbjct 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 Query 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR Sbjct 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 Query 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS Sbjct 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 Query 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD Sbjct 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 Query 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL Sbjct 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 Query 301 AEIARQRRRPREPREQTQNRMI 322 A IARQRRRPREPREQTQNRMI Sbjct 301 AAIARQRRRPREPREQTQNRMI 322 >gi|167967116|ref|ZP_02549393.1| putative trna/rrna methyltransferase [Mycobacterium tuberculosis H37Ra] Length=316 Score = 620 bits (1598), Expect = 1e-175, Method: Compositional matrix adjust. Identities = 316/316 (100%), Positives = 316/316 (100%), Gaps = 0/316 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP Sbjct 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 Query 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR Sbjct 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 Query 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS Sbjct 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 Query 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD Sbjct 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 Query 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL Sbjct 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 Query 301 AEIARQRRRPREPREQ 316 AEIARQRRRPREPREQ Sbjct 301 AEIARQRRRPREPREQ 316 >gi|31794756|ref|NP_857249.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis AF2122/97] gi|81421359|sp|Q7TW55.1|Y3610_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb3610c gi|31620353|emb|CAD95796.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium bovis AF2122/97] Length=402 Score = 615 bits (1587), Expect = 2e-174, Method: Compositional matrix adjust. Identities = 314/316 (99%), Positives = 315/316 (99%), Gaps = 0/316 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP Sbjct 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 Query 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR Sbjct 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 Query 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAI+RS Sbjct 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIMRS 180 Query 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD Sbjct 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 Query 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL Sbjct 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 Query 301 AEIARQRRRPREPREQ 316 A IARQRRRPREPREQ Sbjct 301 AAIARQRRRPREPREQ 316 >gi|294993699|ref|ZP_06799390.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 210] Length=324 Score = 614 bits (1584), Expect = 5e-174, Method: Compositional matrix adjust. Identities = 313/313 (100%), Positives = 313/313 (100%), Gaps = 0/313 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP Sbjct 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 Query 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR Sbjct 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 Query 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS Sbjct 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 Query 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD Sbjct 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 Query 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL Sbjct 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 Query 301 AEIARQRRRPREP 313 AEIARQRRRPREP Sbjct 301 AEIARQRRRPREP 313 >gi|289571821|ref|ZP_06452048.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289545575|gb|EFD49223.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length=316 Score = 612 bits (1577), Expect = 3e-173, Method: Compositional matrix adjust. Identities = 312/312 (100%), Positives = 312/312 (100%), Gaps = 0/312 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP Sbjct 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 Query 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR Sbjct 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 Query 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS Sbjct 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 Query 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD Sbjct 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 Query 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL Sbjct 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 Query 301 AEIARQRRRPRE 312 AEIARQRRRPRE Sbjct 301 AEIARQRRRPRE 312 >gi|289445173|ref|ZP_06434917.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] gi|289418131|gb|EFD15332.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A] Length=380 Score = 600 bits (1548), Expect = 7e-170, Method: Compositional matrix adjust. Identities = 308/309 (99%), Positives = 308/309 (99%), Gaps = 0/309 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP Sbjct 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 Query 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR Sbjct 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 Query 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS Sbjct 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 Query 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD Sbjct 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 Query 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL Sbjct 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 Query 301 AEIARQRRR 309 A IARQRRR Sbjct 301 AAIARQRRR 309 >gi|289752294|ref|ZP_06511672.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92] gi|289692881|gb|EFD60310.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92] Length=298 Score = 583 bits (1503), Expect = 1e-164, Method: Compositional matrix adjust. Identities = 297/298 (99%), Positives = 297/298 (99%), Gaps = 0/298 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP Sbjct 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 Query 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR Sbjct 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 Query 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS Sbjct 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 Query 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD Sbjct 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 Query 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGV 298 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVV IPMAAQAESLNASVAAGV Sbjct 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVFIPMAAQAESLNASVAAGV 298 >gi|289759737|ref|ZP_06519115.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|289715301|gb|EFD79313.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85] Length=280 Score = 550 bits (1418), Expect = 1e-154, Method: Compositional matrix adjust. Identities = 279/280 (99%), Positives = 280/280 (100%), Gaps = 0/280 (0%) Query 43 LRPHHPAAKRARAQPRRPVKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLT 102 +RPHHPAAKRARAQPRRPVKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLT Sbjct 1 MRPHHPAAKRARAQPRRPVKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLT 60 Query 103 ECVARAADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALL 162 ECVARAADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALL Sbjct 61 ECVARAADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALL 120 Query 163 VALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNL 222 VALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNL Sbjct 121 VALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNL 180 Query 223 TRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP 282 TRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP Sbjct 181 TRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP 240 Query 283 MAAQAESLNASVAAGVVLAEIARQRRRPREPREQTQNRMI 322 MAAQAESLNASVAAGVVLAEIARQRRRPREPREQTQNRMI Sbjct 241 MAAQAESLNASVAAGVVLAEIARQRRRPREPREQTQNRMI 280 >gi|118465233|ref|YP_879854.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium 104] gi|254773532|ref|ZP_05215048.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium subsp. avium ATCC 25291] gi|254806514|sp|A0QAB6.1|Y574_MYCA1 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAV_0574 gi|118166520|gb|ABK67417.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium avium 104] Length=309 Score = 535 bits (1379), Expect = 3e-150, Method: Compositional matrix adjust. Identities = 273/308 (89%), Positives = 288/308 (94%), Gaps = 0/308 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNSRRRGAVRK+GTKKG VGSGGQRRRGLEGRGPTPPAHLRP+HPAAKRA++ PRRP Sbjct 1 MAGNSRRRGAVRKAGTKKGPTVGSGGQRRRGLEGRGPTPPAHLRPNHPAAKRAQSPPRRP 60 Query 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 KR +ETETVLGRNPVLECLRAGVPATALYVALGTEADERLTE V+RAADSGI+I+E+ R Sbjct 61 AKRTEETETVLGRNPVLECLRAGVPATALYVALGTEADERLTESVSRAADSGISILEVPR 120 Query 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 ADLDRMT NHLHQGIALQVPPY YAHPDDLL AA PPALLVALDN+SDPRNLGAIVRS Sbjct 121 ADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSPPALLVALDNISDPRNLGAIVRS 180 Query 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTL+ WADRG+RVIGLD Sbjct 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRVIGLD 240 Query 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 AGG T LDD+DG+D LVVVVGSEGKGLSRLVRQNCDEVVSIPMA AESLNASVAAGVVL Sbjct 241 AGGDTTLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGSAESLNASVAAGVVL 300 Query 301 AEIARQRR 308 AEI+RQRR Sbjct 301 AEISRQRR 308 >gi|336458473|gb|EGO37446.1| rRNA methylase, putative, group 3 [Mycobacterium avium subsp. paratuberculosis S397] Length=309 Score = 535 bits (1379), Expect = 3e-150, Method: Compositional matrix adjust. Identities = 273/308 (89%), Positives = 288/308 (94%), Gaps = 0/308 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNSRRRGAVRK+GTKKG VGSGGQRRRGLEGRGPTPPAHLRP+HPAAKRA++ PRRP Sbjct 1 MAGNSRRRGAVRKAGTKKGPTVGSGGQRRRGLEGRGPTPPAHLRPNHPAAKRAQSPPRRP 60 Query 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 KR +ETETVLGRNPVLECLRAGVPATALYVALGTEADERLTE V+RAADSGI+I+E+ R Sbjct 61 AKRTEETETVLGRNPVLECLRAGVPATALYVALGTEADERLTESVSRAADSGISILEVPR 120 Query 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 ADLDRMT NHLHQGIALQVPPY YAHPDDLL AA PPALLVALDN+SDPRNLGAIVRS Sbjct 121 ADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSPPALLVALDNISDPRNLGAIVRS 180 Query 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTL+ WADRG+RVIGLD Sbjct 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRVIGLD 240 Query 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 AGG T LDD+DG+D LVVVVGSEGKGLSRLVRQNCDEVVSIPMA AESLNASVAAGVVL Sbjct 241 AGGDTMLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGSAESLNASVAAGVVL 300 Query 301 AEIARQRR 308 AEI+RQRR Sbjct 301 AEISRQRR 308 >gi|183985047|ref|YP_001853338.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M] gi|254806447|sp|B2HJ20.1|Y5079_MYCMM RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MMAR_5079 gi|183178373|gb|ACC43483.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M] Length=310 Score = 534 bits (1376), Expect = 7e-150, Method: Compositional matrix adjust. Identities = 270/309 (88%), Positives = 288/309 (94%), Gaps = 1/309 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNS+RRGA+RKSGTKKG VGSGGQRRRGLEGRGPTPPAH+RP+HPAAKRA+AQ RRP Sbjct 1 MAGNSQRRGAIRKSGTKKGTSVGSGGQRRRGLEGRGPTPPAHMRPNHPAAKRAKAQQRRP 60 Query 61 VK-RADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELL 119 + R DETETVLGRNPVLECLRAGVP+TALYVALG EADERLTE V+RAADSGI I+E+ Sbjct 61 ARGRTDETETVLGRNPVLECLRAGVPSTALYVALGVEADERLTESVSRAADSGIPILEVP 120 Query 120 RADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVR 179 R DLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALD PPALLVALDN+SDPRNLGAIVR Sbjct 121 RTDLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDTPPALLVALDNISDPRNLGAIVR 180 Query 180 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGL 239 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAAR+PVARATNLTR LK WADRGVRV+GL Sbjct 181 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATNLTRALKDWADRGVRVVGL 240 Query 240 DAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVV 299 DAGG TA+DD+DG+D +VVVVGSEGKGLSRLVRQ CDEVVS+PMA ESLNASVAAGVV Sbjct 241 DAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPMAGPTESLNASVAAGVV 300 Query 300 LAEIARQRR 308 LAEIARQRR Sbjct 301 LAEIARQRR 309 >gi|296166634|ref|ZP_06849061.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898006|gb|EFG77585.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=310 Score = 533 bits (1373), Expect = 1e-149, Method: Compositional matrix adjust. Identities = 272/309 (89%), Positives = 288/309 (94%), Gaps = 1/309 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNSRRRGA+RK+GTKKG VGSGGQRRR LEGRGPTPPAHLRP+HPAAKRA++ PRRP Sbjct 1 MAGNSRRRGAIRKAGTKKGPTVGSGGQRRRALEGRGPTPPAHLRPNHPAAKRAQSPPRRP 60 Query 61 VKR-ADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELL 119 KR DETETVLGRNPVLECLRAGVPATALYVALGT+ DER+TE VARAADSGI+I+E+ Sbjct 61 AKRPTDETETVLGRNPVLECLRAGVPATALYVALGTDTDERVTESVARAADSGISILEVP 120 Query 120 RADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVR 179 RADLDRMT+NHLHQGIALQVPPY+YAHPDDLLA AL PP LLVALDN+SDPRNLGAIVR Sbjct 121 RADLDRMTSNHLHQGIALQVPPYSYAHPDDLLATALGSPPPLLVALDNISDPRNLGAIVR 180 Query 180 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGL 239 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLK WADRG+RVIGL Sbjct 181 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKDWADRGIRVIGL 240 Query 240 DAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVV 299 DAGG T +DD+DG D LVVVVGSEGKGLSRLVRQNCDEVVSIPMA QAESLNASVAAGVV Sbjct 241 DAGGDTVVDDLDGADPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGQAESLNASVAAGVV 300 Query 300 LAEIARQRR 308 LAEIARQRR Sbjct 301 LAEIARQRR 309 >gi|41406577|ref|NP_959413.1| hypothetical protein MAP0479 [Mycobacterium avium subsp. paratuberculosis K-10] gi|81414895|sp|Q743W2.1|Y479_MYCPA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAP_0479 gi|41394926|gb|AAS02796.1| hypothetical protein MAP_0479 [Mycobacterium avium subsp. paratuberculosis K-10] Length=309 Score = 532 bits (1370), Expect = 3e-149, Method: Compositional matrix adjust. Identities = 272/308 (89%), Positives = 287/308 (94%), Gaps = 0/308 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNSRRRGAVRK+GTKKG VGSGGQRRRGLEGRGPTPPAHLRP+HPAAKRA++ PRRP Sbjct 1 MAGNSRRRGAVRKAGTKKGPTVGSGGQRRRGLEGRGPTPPAHLRPNHPAAKRAQSPPRRP 60 Query 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 KR +ETETVLGRNPVLECLRAGVPATALYVALGTEADERLTE V+RAADSGI+I+E+ R Sbjct 61 AKRTEETETVLGRNPVLECLRAGVPATALYVALGTEADERLTESVSRAADSGISILEVPR 120 Query 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 ADLDRMT NHLHQGIALQVPPY YAHPDDLL AA PALLVALDN+SDPRNLGAIVRS Sbjct 121 ADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSLPALLVALDNISDPRNLGAIVRS 180 Query 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTL+ WADRG+RVIGLD Sbjct 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRVIGLD 240 Query 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 AGG T LDD+DG+D LVVVVGSEGKGLSRLVRQNCDEVVSIPMA AESLNASVAAGVVL Sbjct 241 AGGDTMLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGSAESLNASVAAGVVL 300 Query 301 AEIARQRR 308 AEI+RQRR Sbjct 301 AEISRQRR 308 >gi|118619334|ref|YP_907666.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99] gi|254803872|sp|A0PV26.1|Y4155_MYCUA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MUL_4155 gi|118571444|gb|ABL06195.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99] Length=310 Score = 531 bits (1369), Expect = 5e-149, Method: Compositional matrix adjust. Identities = 269/309 (88%), Positives = 287/309 (93%), Gaps = 1/309 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNS+RRGA+RKSGTKKG VGSGGQRRRGLEGRGPTP AH+RP+HPAAKRA+AQ RRP Sbjct 1 MAGNSQRRGAIRKSGTKKGTSVGSGGQRRRGLEGRGPTPSAHMRPNHPAAKRAKAQQRRP 60 Query 61 VK-RADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELL 119 + R DETETVLGRNPVLECLRAGVP+TALYVALG EADERLTE V+RAADSGI I+E+ Sbjct 61 ARGRTDETETVLGRNPVLECLRAGVPSTALYVALGVEADERLTESVSRAADSGIPILEVP 120 Query 120 RADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVR 179 R DLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALD PPALLVALDN+SDPRNLGAIVR Sbjct 121 RTDLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDTPPALLVALDNISDPRNLGAIVR 180 Query 180 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGL 239 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAAR+PVARATNLTR LK WADRGVRV+GL Sbjct 181 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATNLTRALKDWADRGVRVVGL 240 Query 240 DAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVV 299 DAGG TA+DD+DG+D +VVVVGSEGKGLSRLVRQ CDEVVS+PMA ESLNASVAAGVV Sbjct 241 DAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPMAGPTESLNASVAAGVV 300 Query 300 LAEIARQRR 308 LAEIARQRR Sbjct 301 LAEIARQRR 309 >gi|240172165|ref|ZP_04750824.1| tRNA/rRNA methyltransferase [Mycobacterium kansasii ATCC 12478] Length=310 Score = 515 bits (1326), Expect = 4e-144, Method: Compositional matrix adjust. Identities = 277/309 (90%), Positives = 294/309 (96%), Gaps = 1/309 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNS+RRGAVRKSGTKKGA VGSGGQRRRGLEGRGPTPPAH+RP+HPAAKRA+A PRRP Sbjct 1 MAGNSQRRGAVRKSGTKKGAPVGSGGQRRRGLEGRGPTPPAHMRPNHPAAKRAKAAPRRP 60 Query 61 VK-RADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELL 119 V+ R DE ETVLGRNPVLECLRAGVPATALYVALG EADER+TE VARAADSGI+I+E+ Sbjct 61 VRSRIDEAETVLGRNPVLECLRAGVPATALYVALGAEADERVTESVARAADSGISILEVP 120 Query 120 RADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVR 179 RADLDRMTANHLHQGIALQVPPY+YAHPDDLLAAA+D PPALLVALDN+SDPRNLGAIVR Sbjct 121 RADLDRMTANHLHQGIALQVPPYHYAHPDDLLAAAMDTPPALLVALDNISDPRNLGAIVR 180 Query 180 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGL 239 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLK WADRG+RVIGL Sbjct 181 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKDWADRGLRVIGL 240 Query 240 DAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVV 299 DA G TA+DD+DG+D LVVVVGSEGKGLSRLVRQNCDEVVSIPMA +AESLNASVAAGVV Sbjct 241 DAAGETAVDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGRAESLNASVAAGVV 300 Query 300 LAEIARQRR 308 LAEIARQRR Sbjct 301 LAEIARQRR 309 >gi|254801702|sp|B8ZUB0.2|Y324_MYCLB RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MLBr00324 gi|254801703|sp|Q9CCW4.2|Y324_MYCLE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase ML0324 Length=309 Score = 513 bits (1321), Expect = 2e-143, Method: Compositional matrix adjust. Identities = 260/308 (85%), Positives = 276/308 (90%), Gaps = 0/308 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 MPGNSRRRGAVRKSGT KG VGSGGQRRR LEGRGPTPPA+LRP+HPAAKR ++ P RP Sbjct 1 MPGNSRRRGAVRKSGTNKGTTVGSGGQRRRALEGRGPTPPAYLRPNHPAAKRNQSSPHRP 60 Query 61 VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR 120 VKR DETETVLGRNPVLECLRAGVPATALYVALGTE D+RLTE V RAAD G+AI+E+ R Sbjct 61 VKRTDETETVLGRNPVLECLRAGVPATALYVALGTEVDKRLTESVMRAADVGVAILEVPR 120 Query 121 ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS 180 LDR+T NHLHQGIALQVPPY+Y H DDLLAAA D PPALLVALDN+SDPRNLGAIVRS Sbjct 121 TYLDRITNNHLHQGIALQVPPYHYVHSDDLLAAATDSPPALLVALDNISDPRNLGAIVRS 180 Query 181 VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD 240 VAAF GHG+LIPQRRSASVTAVAWRTSAGAAARIPVARATNLTR LK WAD+G+RVIGLD Sbjct 181 VAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGLRVIGLD 240 Query 241 AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300 G TALDD+DGTD L VVVGSEGKGLSRLVR +CDEVVSIPMA Q ESLNASVA GVVL Sbjct 241 HDGDTALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVSIPMAGQVESLNASVAVGVVL 300 Query 301 AEIARQRR 308 AEIARQRR Sbjct 301 AEIARQRR 308 >gi|254822714|ref|ZP_05227715.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium intracellulare ATCC 13950] Length=310 Score = 504 bits (1298), Expect = 8e-141, Method: Compositional matrix adjust. Identities = 266/309 (87%), Positives = 285/309 (93%), Gaps = 1/309 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNSRRRGA+RK+GTKKG VGSGGQRRRGLEGRGPTPPAH+RP+HPAAKRA++ RRP Sbjct 1 MAGNSRRRGAIRKAGTKKGPTVGSGGQRRRGLEGRGPTPPAHMRPNHPAAKRAQSPSRRP 60 Query 61 VK-RADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELL 119 + + DETETVLGRNPVLECLRAGVPATALYVALG+EADERLTE V+RAAD GIAI+E+ Sbjct 61 ARGKTDETETVLGRNPVLECLRAGVPATALYVALGSEADERLTESVSRAADLGIAILEVP 120 Query 120 RADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVR 179 R DLDRMT NHLHQGIALQVPPYNYAHPDDL+ AA PPALLVALDN+SDPRNLGAIVR Sbjct 121 RTDLDRMTNNHLHQGIALQVPPYNYAHPDDLVEAATGSPPALLVALDNISDPRNLGAIVR 180 Query 180 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGL 239 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAAR+PVARATNLTRTL WADRG+RVIGL Sbjct 181 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARVPVARATNLTRTLTDWADRGLRVIGL 240 Query 240 DAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVV 299 DAGG T LDD+DGTD +VVVVGSEGKGLSRLVRQNCDEVVSIPMA AESLNASVAAGVV Sbjct 241 DAGGDTTLDDLDGTDPIVVVVGSEGKGLSRLVRQNCDEVVSIPMAGNAESLNASVAAGVV 300 Query 300 LAEIARQRR 308 LAEI+RQRR Sbjct 301 LAEISRQRR 309 >gi|342862417|ref|ZP_08719057.1| tRNA/rRNA methyltransferase [Mycobacterium colombiense CECT 3035] gi|342130088|gb|EGT83422.1| tRNA/rRNA methyltransferase [Mycobacterium colombiense CECT 3035] Length=310 Score = 503 bits (1296), Expect = 1e-140, Method: Compositional matrix adjust. Identities = 267/309 (87%), Positives = 280/309 (91%), Gaps = 1/309 (0%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNSRRRGA+RK G+KKG VGSGGQRRRGLEGRGPTPPAH+RP+HPAAKRA+AQ RRP Sbjct 1 MAGNSRRRGAIRKEGSKKGPTVGSGGQRRRGLEGRGPTPPAHMRPNHPAAKRAKAQSRRP 60 Query 61 VK-RADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELL 119 + R DE ETVLGRNPVLECLRAGVPATALYVALGTEADERLTE V RAADSGI+I+E+ Sbjct 61 ARGRTDEAETVLGRNPVLECLRAGVPATALYVALGTEADERLTESVTRAADSGISILEVP 120 Query 120 RADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVR 179 R DLDRMT NHLHQGIALQVPPY YAHPDDL+AAAL PPALLVALDN+SDPRNLGAIVR Sbjct 121 RTDLDRMTGNHLHQGIALQVPPYEYAHPDDLVAAALSAPPALLVALDNISDPRNLGAIVR 180 Query 180 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGL 239 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNL RTL WA RG+RVIGL Sbjct 181 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLNRTLTDWAARGLRVIGL 240 Query 240 DAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVV 299 DA G T LDD+DGTD LVVVVGSEGKGLSRLVRQNCDEVVSIPMA ESLNASVAAGVV Sbjct 241 DADGDTTLDDIDGTDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGNTESLNASVAAGVV 300 Query 300 LAEIARQRR 308 LAEI RQRR Sbjct 301 LAEITRQRR 309 >gi|15843192|ref|NP_338229.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|308232506|ref|ZP_07416270.2| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] gi|13883545|gb|AAK48043.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis CDC1551] gi|308213805|gb|EFO73204.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001] Length=253 Score = 496 bits (1276), Expect = 3e-138, Method: Compositional matrix adjust. Identities = 252/253 (99%), Positives = 253/253 (100%), Gaps = 0/253 (0%) Query 70 VLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLRADLDRMTAN 129 +LGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLRADLDRMTAN Sbjct 1 MLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLRADLDRMTAN 60 Query 130 HLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGV 189 HLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGV Sbjct 61 HLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGV 120 Query 190 LIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALDD 249 LIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALDD Sbjct 121 LIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALDD 180 Query 250 VDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRR 309 VDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRR Sbjct 181 VDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRR 240 Query 310 PREPREQTQNRMI 322 PREPREQTQNRMI Sbjct 241 PREPREQTQNRMI 253 >gi|333992510|ref|YP_004525124.1| tRNA/rRNA methyltransferase [Mycobacterium sp. JDM601] gi|333488478|gb|AEF37870.1| tRNA/rRNA methyltransferase [Mycobacterium sp. JDM601] Length=313 Score = 477 bits (1227), Expect = 1e-132, Method: Compositional matrix adjust. Identities = 252/313 (81%), Positives = 273/313 (88%), Gaps = 5/313 (1%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQP--- 57 M GNS+R+GAVRK GTKKG VGSGGQRRRGLEGRG TPPAHLR +HPAAK A+ Sbjct 1 MAGNSKRKGAVRKPGTKKGPTVGSGGQRRRGLEGRGATPPAHLREYHPAAKAAKRAAKQR 60 Query 58 -RRPVKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIV 116 R KR DE ETVLGRNPVLECLRAG+PATALYVALG EADERLTE V RAADSG+ I+ Sbjct 61 AYRTAKRTDENETVLGRNPVLECLRAGIPATALYVALGAEADERLTESVTRAADSGLPIL 120 Query 117 ELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAA-LDQPPALLVALDNLSDPRNLG 175 E+ R+DLD+MT N LHQGIALQVPPYNYAHPDDLLAAA D PALLVALDN+SDPRNLG Sbjct 121 EVPRSDLDKMTTNGLHQGIALQVPPYNYAHPDDLLAAARKDVAPALLVALDNISDPRNLG 180 Query 176 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVR 235 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV RA NLT+TLKGWADRG++ Sbjct 181 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVGRAPNLTQTLKGWADRGLQ 240 Query 236 VIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVA 295 V+GLDAGG T +D++DGT +V+VVGSEGKGLSRLVRQNCD +VSIPMA ESLNASVA Sbjct 241 VVGLDAGGDTVVDELDGTGPMVLVVGSEGKGLSRLVRQNCDAIVSIPMAGPTESLNASVA 300 Query 296 AGVVLAEIARQRR 308 AGVVLAEIARQRR Sbjct 301 AGVVLAEIARQRR 313 >gi|15827088|ref|NP_301351.1| methyltransferase [Mycobacterium leprae TN] gi|221229566|ref|YP_002502982.1| putative methyltransferase [Mycobacterium leprae Br4923] gi|13092636|emb|CAC29832.1| putative methyltransferase [Mycobacterium leprae] gi|219932673|emb|CAR70417.1| putative methyltransferase [Mycobacterium leprae Br4923] Length=278 Score = 460 bits (1184), Expect = 1e-127, Method: Compositional matrix adjust. Identities = 232/277 (84%), Positives = 249/277 (90%), Gaps = 0/277 (0%) Query 32 LEGRGPTPPAHLRPHHPAAKRARAQPRRPVKRADETETVLGRNPVLECLRAGVPATALYV 91 +EGRGPTPPA+LRP+HPAAKR ++ P RPVKR DETETVLGRNPVLECLRAGVPATALYV Sbjct 1 MEGRGPTPPAYLRPNHPAAKRNQSSPHRPVKRTDETETVLGRNPVLECLRAGVPATALYV 60 Query 92 ALGTEADERLTECVARAADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLL 151 ALGTE D+RLTE V RAAD G+AI+E+ R LDR+T NHLHQGIALQVPPY+Y H DDLL Sbjct 61 ALGTEVDKRLTESVMRAADVGVAILEVPRTYLDRITNNHLHQGIALQVPPYHYVHSDDLL 120 Query 152 AAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAA 211 AAA D PPALLVALDN+SDPRNLGAIVRSVAAF GHG+LIPQRRSASVTAVAWRTSAGAA Sbjct 121 AAATDSPPALLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAA 180 Query 212 ARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLV 271 ARIPVARATNLTR LK WAD+G+RVIGLD G TALDD+DGTD L VVVGSEGKGLSRLV Sbjct 181 ARIPVARATNLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLV 240 Query 272 RQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRR 308 R +CDEVVSIPMA Q ESLNASVA GVVLAEIARQRR Sbjct 241 RHSCDEVVSIPMAGQVESLNASVAVGVVLAEIARQRR 277 >gi|120406285|ref|YP_956114.1| RNA methyltransferase [Mycobacterium vanbaalenii PYR-1] gi|254806469|sp|A1TG08.1|Y5337_MYCVP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mvan_5337 gi|119959103|gb|ABM16108.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium vanbaalenii PYR-1] Length=314 Score = 456 bits (1173), Expect = 2e-126, Method: Compositional matrix adjust. Identities = 245/312 (79%), Positives = 265/312 (85%), Gaps = 4/312 (1%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNS+RRGAVRK+GTKKG VGSGG RRRGLEG+G TPPAH RPHHPA KRA R+ Sbjct 1 MAGNSQRRGAVRKAGTKKGPTVGSGGVRRRGLEGKGATPPAHQRPHHPAGKRAAKAARQA 60 Query 61 V---KRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVE 117 K+ D+TE VLGRNPVLECLRAGVPATALYVALG ++DERLTE V AAD GIAI+E Sbjct 61 QGRHKKTDDTEIVLGRNPVLECLRAGVPATALYVALGADSDERLTESVQIAADKGIAILE 120 Query 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLA-AALDQPPALLVALDNLSDPRNLGA 176 + R DLDR+ AN +HQGIALQVPPYNYAHPDDLLA A D PALLVALDN+SDPRNLGA Sbjct 121 VPRHDLDRIAANGMHQGIALQVPPYNYAHPDDLLAEAKSDAMPALLVALDNISDPRNLGA 180 Query 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAAR PVARATNLTR LK WAD G++V Sbjct 181 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARTPVARATNLTRALKQWADAGLQV 240 Query 237 IGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAA 296 +GLDA G T +D +DG +VVVVGSEGKGLSRLVR+NCD VVSIPMA ESLNASVAA Sbjct 241 VGLDADGDTTVDQIDGAGPIVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVAA 300 Query 297 GVVLAEIARQRR 308 GVVLAEIARQRR Sbjct 301 GVVLAEIARQRR 312 >gi|169627675|ref|YP_001701324.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977] gi|254806513|sp|B1MGY6.1|Y572_MYCA9 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAB_0572 gi|169239642|emb|CAM60670.1| Putative tRNA/rRNA methyltransferase [Mycobacterium abscessus] Length=315 Score = 453 bits (1165), Expect = 2e-125, Method: Compositional matrix adjust. Identities = 237/315 (76%), Positives = 263/315 (84%), Gaps = 7/315 (2%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQ---- 56 M GNS+RRGAVRK GTKKG VGSGG RRRGLEG+G TPPA R HPAAKRA Q Sbjct 1 MAGNSQRRGAVRKPGTKKGPTVGSGGVRRRGLEGKGATPPAEQRTKHPAAKRAAVQRKIA 60 Query 57 --PRRPVKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIA 114 +R +K+ DE E VLGRNPVLECLR GVPATALYVA+G + DERLTE VA AAD+GIA Sbjct 61 DAKQRRLKQGDEAEMVLGRNPVLECLRTGVPATALYVAVGADNDERLTESVALAADAGIA 120 Query 115 IVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAA-LDQPPALLVALDNLSDPRN 173 I+E+ R DLDRM+ N LHQG+ALQ+PPY YAHPDDLLA A + PALLVALDN+SDPRN Sbjct 121 ILEVPRPDLDRMSTNGLHQGLALQIPPYKYAHPDDLLARARAEAQPALLVALDNISDPRN 180 Query 174 LGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRG 233 LGAIVRSVAAFGGHGV+IPQRRSASVTAVAWRTSAGAAAR+PVARATNLTRTLK W D+G Sbjct 181 LGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKG 240 Query 234 VRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNAS 293 + ++GLDAGG T LD++DG + VVVGSEGKGLS+LVR+ CD VVSIPMA ESLNAS Sbjct 241 ITIVGLDAGGDTELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIPMAGPVESLNAS 300 Query 294 VAAGVVLAEIARQRR 308 VAAGVVLAEIARQRR Sbjct 301 VAAGVVLAEIARQRR 315 >gi|145222039|ref|YP_001132717.1| RNA methyltransferase [Mycobacterium gilvum PYR-GCK] gi|315446219|ref|YP_004079098.1| rRNA methylase, , group 3 [Mycobacterium sp. Spyr1] gi|254800512|sp|A4T5L0.1|Y1447_MYCGI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mflv_1447 gi|145214525|gb|ABP43929.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium gilvum PYR-GCK] gi|315264522|gb|ADU01264.1| rRNA methylase, putative, group 3 [Mycobacterium sp. Spyr1] Length=314 Score = 452 bits (1162), Expect = 4e-125, Method: Compositional matrix adjust. Identities = 242/312 (78%), Positives = 265/312 (85%), Gaps = 4/312 (1%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNS+RRGAVRK+GTKKG VGSGG RRRGLEGRG TPPAH RPHHPA KRA R+ Sbjct 1 MAGNSQRRGAVRKAGTKKGPQVGSGGVRRRGLEGRGATPPAHERPHHPAGKRAAKAARQA 60 Query 61 V---KRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVE 117 K+ D+TE VLGRNPV+ECLRAGVPATALYVALGT+ADERLTE V AAD GI+I+E Sbjct 61 QGRHKKTDDTEIVLGRNPVVECLRAGVPATALYVALGTDADERLTESVQMAADRGISILE 120 Query 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLL-AAALDQPPALLVALDNLSDPRNLGA 176 + R DLDRM AN LHQGIALQVPPY YAHPDDLL A D PALLVALDN+SDPRNLGA Sbjct 121 VQRHDLDRMAANGLHQGIALQVPPYAYAHPDDLLRDAKSDAAPALLVALDNISDPRNLGA 180 Query 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236 IVRSVAAFGGHGV++PQRRSASVTAVAWRTSAGAAAR PVARATNL RTLK +AD G++V Sbjct 181 IVRSVAAFGGHGVVLPQRRSASVTAVAWRTSAGAAARTPVARATNLNRTLKQYADAGLQV 240 Query 237 IGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAA 296 +GLDAGG T +D++DG +VVVGSEGKGLSRLVR+NCD +VSIPMA ESLNASVAA Sbjct 241 VGLDAGGDTTIDEIDGLTPTIVVVGSEGKGLSRLVRENCDRIVSIPMAGPTESLNASVAA 300 Query 297 GVVLAEIARQRR 308 GVVLAEIARQRR Sbjct 301 GVVLAEIARQRR 312 >gi|54022403|ref|YP_116645.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152] gi|54013911|dbj|BAD55281.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152] Length=324 Score = 443 bits (1139), Expect = 2e-122, Method: Compositional matrix adjust. Identities = 239/324 (74%), Positives = 267/324 (83%), Gaps = 15/324 (4%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRA------- 53 M GNS+RRGAVRKSGTKKG VGSGG+RRRGLEGRG TPPA +R HPAAKRA Sbjct 1 MAGNSQRRGAVRKSGTKKGQVVGSGGKRRRGLEGRGATPPAEMRTKHPAAKRAAAKAKAA 60 Query 54 -----RAQPRRPV--KRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVA 106 R RP K D E VLGRNPV+ECLRAGVPATALYVA+GTE DERLTE V Sbjct 61 AKAGPRGAAGRPAGRKNDDGPELVLGRNPVVECLRAGVPATALYVAVGTENDERLTESVK 120 Query 107 RAADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQ-PPALLVAL 165 AAD+GI+I+E+ R DLDRM++N LHQG+ALQVPPY YAHPDDL A PALLVAL Sbjct 121 LAADTGISILEVPRTDLDRMSSNGLHQGLALQVPPYRYAHPDDLAERARSSAEPALLVAL 180 Query 166 DNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRT 225 DN+SDPRNLGA++RSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAAR+PVARATNLTRT Sbjct 181 DNISDPRNLGAVIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRT 240 Query 226 LKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAA 285 LK WA++G++++GLDAGG T+LD+ DGTD V+VVGSEGKGLSRLVR+ CD V+SIPMA Sbjct 241 LKDWANQGMQIVGLDAGGDTSLDEFDGTDPTVIVVGSEGKGLSRLVRETCDSVLSIPMAG 300 Query 286 QAESLNASVAAGVVLAEIARQRRR 309 ESLNASVAAGVVL+EIARQRRR Sbjct 301 PVESLNASVAAGVVLSEIARQRRR 324 >gi|312138101|ref|YP_004005437.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S] gi|311887440|emb|CBH46752.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S] Length=322 Score = 440 bits (1131), Expect = 2e-121, Method: Compositional matrix adjust. Identities = 231/320 (73%), Positives = 267/320 (84%), Gaps = 12/320 (3%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRA------- 53 M GNS RRGA+RK GTKKG VGSGG+R +GLEGRG TPPA R HPAAK+A Sbjct 2 MAGNSSRRGAIRKGGTKKGQVVGSGGKRSKGLEGRGATPPAEARTKHPAAKKARAAARAA 61 Query 54 ---RAQPRRPVKRADET-ETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAA 109 + Q ++RAD++ E VLGRNPV+ECLRAGVPATALYVA+G E D+RL E V RAA Sbjct 62 DQRQMQRAAAIRRADDSPEMVLGRNPVVECLRAGVPATALYVAVGAETDDRLKESVQRAA 121 Query 110 DSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALD-QPPALLVALDNL 168 D+GI+I+E+ R DLDRM+AN +HQGIALQVPPY YAHPDDLL AA Q PALLVALDN+ Sbjct 122 DAGISILEVPRTDLDRMSANGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVALDNI 181 Query 169 SDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKG 228 +DPRNLGA+VRSVAAFGGHGV+IPQRRSASVTAVAWRTSAGAAAR+PVARATNLTRTLK Sbjct 182 TDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKD 241 Query 229 WADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAE 288 W +GV+V+GLDAGG T+LD+ +GT +V+VVGSEGKGLSRLVR+ CD ++SIPMA + E Sbjct 242 WQSKGVQVVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAGEVE 301 Query 289 SLNASVAAGVVLAEIARQRR 308 SLNASVAAGVVL+EIARQRR Sbjct 302 SLNASVAAGVVLSEIARQRR 321 >gi|325674995|ref|ZP_08154682.1| RNA methyltransferase [Rhodococcus equi ATCC 33707] gi|325554581|gb|EGD24256.1| RNA methyltransferase [Rhodococcus equi ATCC 33707] Length=321 Score = 439 bits (1130), Expect = 2e-121, Method: Compositional matrix adjust. Identities = 229/320 (72%), Positives = 265/320 (83%), Gaps = 12/320 (3%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAA---------- 50 M GNS RRGA+RK GTKKG VGSGG+R +GLEGRG TPPA R HPAA Sbjct 1 MAGNSSRRGAIRKGGTKKGQVVGSGGKRSKGLEGRGATPPAEARTKHPAAKKARAAARAA 60 Query 51 KRARAQPRRPVKRADET-ETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAA 109 + + Q ++RAD++ E VLGRNPV+ECLRAGVPATALYVA+G E D+RL E V RAA Sbjct 61 DQRQMQRAAAIRRADDSPEMVLGRNPVVECLRAGVPATALYVAVGAETDDRLKESVQRAA 120 Query 110 DSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALD-QPPALLVALDNL 168 D+GI+I+E+ R DLDRM+AN +HQGIALQVPPY YAHPDDLL AA Q PALLVALDN+ Sbjct 121 DAGISILEVPRTDLDRMSANGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVALDNI 180 Query 169 SDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKG 228 +DPRNLGA+VRSVAAFGGHGV+IPQRRSASVTAVAWRTSAGAAAR+PVARATNLTRTLK Sbjct 181 TDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKD 240 Query 229 WADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAE 288 W +GV+V+GLDAGG T+LD+ +GT +V+VVGSEGKGLSRLVR+ CD ++SIPMA + E Sbjct 241 WQSKGVQVVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAGEVE 300 Query 289 SLNASVAAGVVLAEIARQRR 308 SLNASVAAGVVL+EIARQRR Sbjct 301 SLNASVAAGVVLSEIARQRR 320 >gi|126437686|ref|YP_001073377.1| RNA methyltransferase [Mycobacterium sp. JLS] gi|254806451|sp|A3Q6V9.1|Y5122_MYCSJ RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mjls_5122 gi|126237486|gb|ABO00887.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. JLS] Length=314 Score = 432 bits (1110), Expect = 5e-119, Method: Compositional matrix adjust. Identities = 245/313 (79%), Positives = 271/313 (87%), Gaps = 5/313 (1%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRR- 59 M GNS+RRGAVRK+GTKKG VGSGG RRRGLEGRG TPPAH RP+HPAAKRA ++ Sbjct 1 MAGNSKRRGAVRKAGTKKGPTVGSGGVRRRGLEGRGATPPAHQRPNHPAAKRAAKAAKQQ 60 Query 60 ---PVKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIV 116 P ++ DETE VLGRNPV+ECLRA VPATALYVA+GTEADER+TE V AADSGI+I+ Sbjct 61 QRRPARKTDETELVLGRNPVVECLRAEVPATALYVAMGTEADERVTEAVQIAADSGISIL 120 Query 117 ELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAA-LDQPPALLVALDNLSDPRNLG 175 E+ R+DLDRM+ N LHQG+ LQVPPY+YAHPDDLLA A D PALLVALDN+SDPRNLG Sbjct 121 EVPRSDLDRMSNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLG 180 Query 176 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVR 235 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAAR+PVARATNL RTLK WAD G++ Sbjct 181 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQ 240 Query 236 VIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVA 295 V+GLDA G T LD++DGT +VVVVGSEGKGLSRLVR+NCD VVSIPMA ESLNASVA Sbjct 241 VVGLDADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVA 300 Query 296 AGVVLAEIARQRR 308 AGVVLAEIARQRR Sbjct 301 AGVVLAEIARQRR 313 >gi|108801699|ref|YP_641896.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS] gi|119870850|ref|YP_940802.1| RNA methyltransferase [Mycobacterium sp. KMS] gi|123368666|sp|Q1B2P4.1|Y4736_MYCSS RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mmcs_4736 gi|254803958|sp|A1UMF4.1|Y4822_MYCSK RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mkms_4822 gi|108772118|gb|ABG10840.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS] gi|119696939|gb|ABL94012.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. KMS] Length=314 Score = 431 bits (1107), Expect = 1e-118, Method: Compositional matrix adjust. Identities = 244/313 (78%), Positives = 271/313 (87%), Gaps = 5/313 (1%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRR- 59 M GNS+RRGAVRK+GTKKG VGSGG RRRGLEGRG TPPAH RP+HPAAKRA ++ Sbjct 1 MAGNSKRRGAVRKAGTKKGPTVGSGGVRRRGLEGRGATPPAHQRPNHPAAKRAAKAAKQQ 60 Query 60 ---PVKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIV 116 P ++ DETE VLGRNPV+ECLRA VPATALYVA+GTEADER+TE V AAD+GI+I+ Sbjct 61 QRRPARKTDETELVLGRNPVVECLRAEVPATALYVAMGTEADERVTEAVQIAADNGISIL 120 Query 117 ELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAA-LDQPPALLVALDNLSDPRNLG 175 E+ R+DLDRM+ N LHQG+ LQVPPY+YAHPDDLLA A D PALLVALDN+SDPRNLG Sbjct 121 EVPRSDLDRMSNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLG 180 Query 176 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVR 235 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAAR+PVARATNL RTLK WAD G++ Sbjct 181 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQ 240 Query 236 VIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVA 295 V+GLDA G T LD++DGT +VVVVGSEGKGLSRLVR+NCD VVSIPMA ESLNASVA Sbjct 241 VVGLDADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVA 300 Query 296 AGVVLAEIARQRR 308 AGVVLAEIARQRR Sbjct 301 AGVVLAEIARQRR 313 >gi|262200970|ref|YP_003272178.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis DSM 43247] gi|262084317|gb|ACY20285.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis DSM 43247] Length=316 Score = 429 bits (1102), Expect = 4e-118, Method: Compositional matrix adjust. Identities = 221/315 (71%), Positives = 257/315 (82%), Gaps = 6/315 (1%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPR-- 58 M GNS+R+GA+RKSGTKKG VGSGGQRRRGLEGRG TP A RP+HPA KRA+ + Sbjct 1 MAGNSKRKGAIRKSGTKKGQTVGSGGQRRRGLEGRGATPKAVDRPYHPAHKRAKTAAKPA 60 Query 59 ---RPVKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAI 115 P ++ D E VLGRNPVLECLRAGVPATALYVA +E DER+ E V A D+GIA+ Sbjct 61 GRGAPRRKEDGPEYVLGRNPVLECLRAGVPATALYVASNSEPDERVAEAVKIAGDAGIAL 120 Query 116 VELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAA-LDQPPALLVALDNLSDPRNL 174 +E+ + +LDR++ N LHQG+ALQVP Y YAHPDDLLAAA PALLVALDN++DPRNL Sbjct 121 LEVGKPELDRLSTNGLHQGVALQVPEYTYAHPDDLLAAAKASGTPALLVALDNITDPRNL 180 Query 175 GAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGV 234 GA++RSVAAFGGHGV+IP RRSASVTAVAWRTSAGAAAR+PVA+ATNLTRTLK WA+ G Sbjct 181 GAVIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVAQATNLTRTLKDWAESGA 240 Query 235 RVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASV 294 +++GLDA G LDD DGT V+VVGSEGKGLSRLVR++CD ++SIPMA ESLNASV Sbjct 241 QLVGLDADGDVTLDDYDGTGPTVIVVGSEGKGLSRLVRESCDSILSIPMAGDVESLNASV 300 Query 295 AAGVVLAEIARQRRR 309 AAGVVLAE ARQRR+ Sbjct 301 AAGVVLAEFARQRRQ 315 >gi|226304179|ref|YP_002764137.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226183294|dbj|BAH31398.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length=325 Score = 422 bits (1084), Expect = 5e-116, Method: Compositional matrix adjust. Identities = 227/323 (71%), Positives = 261/323 (81%), Gaps = 15/323 (4%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNS RRGAVRK GTKKG GSGGQ +RGL GRG TPPA R HPAAKRA R Sbjct 1 MAGNSSRRGAVRKGGTKKGQVAGSGGQHKRGLAGRGATPPAEARTKHPAAKRAARAARAD 60 Query 61 VKRA--------------DETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVA 106 K+ D ETVLGRNPV+ECLRAGVPATAL+VA+GTE+D+RL E V Sbjct 61 EKQNQGRGGRPGPGRKVLDGPETVLGRNPVVECLRAGVPATALWVAVGTESDDRLKESVQ 120 Query 107 RAADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQ-PPALLVAL 165 RAAD+GI+I+E+ R+DLDR++AN LHQGIALQVPPY YAHPDDLL+ A P LLVAL Sbjct 121 RAADAGISILEVPRSDLDRLSANGLHQGIALQVPPYRYAHPDDLLSEARKHAEPPLLVAL 180 Query 166 DNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRT 225 DN++DPRNLGA+VRSVAAFGGHGV+IP+RRSASV+AVAWRTSAGAAAR+P+ARATNLTRT Sbjct 181 DNITDPRNLGAVVRSVAAFGGHGVVIPERRSASVSAVAWRTSAGAAARLPIARATNLTRT 240 Query 226 LKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAA 285 LK WA +GV+V+GLDA G T LDD DG+ +V+VVGSEGKGLSRLVR+NCD ++SIPMA Sbjct 241 LKDWASKGVQVVGLDAEGDTTLDDFDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAG 300 Query 286 QAESLNASVAAGVVLAEIARQRR 308 ESLNASVAAGVVLA+IAR+RR Sbjct 301 PVESLNASVAAGVVLADIARRRR 323 >gi|229494432|ref|ZP_04388195.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus erythropolis SK121] gi|229318794|gb|EEN84652.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus erythropolis SK121] Length=323 Score = 421 bits (1082), Expect = 7e-116, Method: Compositional matrix adjust. Identities = 227/321 (71%), Positives = 260/321 (81%), Gaps = 13/321 (4%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNS RRGAVRK GTKKG GSGG+ RRGLEGRG TPPA R HPAAKRA R Sbjct 1 MAGNSSRRGAVRKGGTKKGQVAGSGGKHRRGLEGRGATPPAEARTKHPAAKRAARAARAD 60 Query 61 VKRA------------DETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARA 108 K+ D ETVLGRNPV+ECLRAGVPATAL+VA+GTE+D+RL E V A Sbjct 61 EKQGRGGRPGPGRKVLDGPETVLGRNPVVECLRAGVPATALWVAVGTESDDRLKESVQLA 120 Query 109 ADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQ-PPALLVALDN 167 AD+GI+I+E+ R DLDR++AN LHQGIALQVPPY YAHPDDLL+ A P LLVALDN Sbjct 121 ADAGISILEVPRTDLDRLSANGLHQGIALQVPPYRYAHPDDLLSEARKHAEPPLLVALDN 180 Query 168 LSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLK 227 ++DPRNLGA+VRSVAAFGGHGV+IP+RRSASV+AVAWRTSAGAAAR+P+ARATNLTRTLK Sbjct 181 ITDPRNLGAVVRSVAAFGGHGVVIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLK 240 Query 228 GWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQA 287 WA +GV+V+GLDA G T LDD DG+ +V+VVGSEGKGLSRLVR+NCD ++SIPMA Sbjct 241 DWASKGVQVVGLDAEGDTTLDDFDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGPV 300 Query 288 ESLNASVAAGVVLAEIARQRR 308 ESLNASVAAGVVLA+IAR+RR Sbjct 301 ESLNASVAAGVVLADIARRRR 321 >gi|319948866|ref|ZP_08022979.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] gi|319437468|gb|EFV92475.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4] Length=322 Score = 420 bits (1079), Expect = 2e-115, Method: Compositional matrix adjust. Identities = 220/322 (69%), Positives = 256/322 (80%), Gaps = 11/322 (3%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNS RRGA+RKSGTKKG VGSGGQRRRGLE RG TP A R +HPA +RA+A R+ Sbjct 1 MAGNSSRRGAIRKSGTKKGQVVGSGGQRRRGLEARGATPKAEDRTYHPAHRRAKAASRKA 60 Query 61 ----------VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAAD 110 K+AD E V+GRNPVLECLRAGVPATALYVA+G++ADERLTE V AA Sbjct 61 EGAQQRRRQAQKQADGPEYVVGRNPVLECLRAGVPATALYVAIGSDADERLTEAVHLAAG 120 Query 111 SGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAAL-DQPPALLVALDNLS 169 GI+I+E+ R DLDRM +N +HQG+ LQVPPY Y P DLL A+ PALLVALDN++ Sbjct 121 KGISILEVPRTDLDRMVSNGMHQGVGLQVPPYQYTDPADLLDMAMGSSEPALLVALDNIT 180 Query 170 DPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGW 229 D RNLGA++RSVAAFGGHGVLIP+RRSAS+TAVAWRTSAGAAAR+PVARATNL RTL W Sbjct 181 DTRNLGAVIRSVAAFGGHGVLIPERRSASITAVAWRTSAGAAARLPVARATNLNRTLLDW 240 Query 230 ADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAES 289 A GV+++GLDA G +LDD DGT V+VVGSEGKGLSRLVR+NCD ++SIP+A++ ES Sbjct 241 AKAGVQLVGLDAEGDVSLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIPIASEVES 300 Query 290 LNASVAAGVVLAEIARQRRRPR 311 LNASVAAGVVL+E ARQRR R Sbjct 301 LNASVAAGVVLSEFARQRRVKR 322 >gi|118473323|ref|YP_890295.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium smegmatis str. MC2 155] gi|254806534|sp|A0R557.1|Y6073_MYCS2 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MSMEG_6073 gi|118174610|gb|ABK75506.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium smegmatis str. MC2 155] Length=314 Score = 412 bits (1059), Expect = 3e-113, Method: Compositional matrix adjust. Identities = 236/313 (76%), Positives = 264/313 (85%), Gaps = 5/313 (1%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNS+RRGAVRK GTKKG VGSGG RRRGLEGRG TPPAH+RP+HPAAK+ARA + Sbjct 1 MAGNSQRRGAVRKPGTKKGPTVGSGGVRRRGLEGRGATPPAHMRPNHPAAKKARAAAKAQ 60 Query 61 V----KRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIV 116 ++ADETE VLGRNPVLECLRA VPATALYVALGT+ADER+TE V AAD GI+I+ Sbjct 61 QQRAGRKADETELVLGRNPVLECLRAKVPATALYVALGTDADERVTESVQIAADRGISIL 120 Query 117 ELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLG 175 E+ R DLDRM+ + LHQG+ LQVPPY YAHPDDLLA A LLVALDN+SDPRNLG Sbjct 121 EVPRTDLDRMSNHGLHQGLGLQVPPYAYAHPDDLLATARADAAPALLVALDNISDPRNLG 180 Query 176 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVR 235 AIVRSVAAF GHGV+IPQRRSASVTAVAWRTSAGAAAR+PVARATNL RTLK +AD G++ Sbjct 181 AIVRSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARVPVARATNLNRTLKSFADAGLQ 240 Query 236 VIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVA 295 ++GLDAGG T LD++D T VVVVGSEGKGLSRLVR++CD +VSIPMA ESLNASVA Sbjct 241 IVGLDAGGDTTLDELDATGPTVVVVGSEGKGLSRLVREHCDAIVSIPMAGPTESLNASVA 300 Query 296 AGVVLAEIARQRR 308 AGVVLAEIARQRR Sbjct 301 AGVVLAEIARQRR 313 >gi|226363791|ref|YP_002781573.1| rRNA methyltransferase [Rhodococcus opacus B4] gi|226242280|dbj|BAH52628.1| rRNA methyltransferase [Rhodococcus opacus B4] Length=322 Score = 405 bits (1042), Expect = 4e-111, Method: Compositional matrix adjust. Identities = 232/321 (73%), Positives = 266/321 (83%), Gaps = 13/321 (4%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARA----- 55 M GNS RRGA+RK+GTKKG GSGGQRR+GLEGRG TPPA R HPAAKRA Sbjct 1 MAGNSSRRGAIRKAGTKKGQVAGSGGQRRKGLEGRGATPPAEARTKHPAAKRAARAAREA 60 Query 56 --QPRRPVKRA-----DETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARA 108 QP R + A D ETVLGRNPV+ECLRAGVPATALYVA+GTE+D+RL E V RA Sbjct 61 EKQPGRGRQAAGRKVLDGPETVLGRNPVVECLRAGVPATALYVAVGTESDDRLKESVQRA 120 Query 109 ADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDN 167 AD+GI+I+E+ R DLDR++AN +HQGIALQVPPY YAHPDDL+A A A LLVALDN Sbjct 121 ADAGISILEVPRTDLDRLSANGMHQGIALQVPPYRYAHPDDLIAEARKHQEAPLLVALDN 180 Query 168 LSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLK 227 ++DPRNLGA+VRSVAAFGGHGV+IP+RRSASVTAVAWRTSAGAAAR+P+ARATNLTRTLK Sbjct 181 ITDPRNLGAVVRSVAAFGGHGVVIPERRSASVTAVAWRTSAGAAARLPIARATNLTRTLK 240 Query 228 GWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQA 287 WA +GV+V+GLDAGG T LD+ DG+ +VVVVGSEGKGLSRLVR+NCD ++SIPMA Sbjct 241 DWASKGVQVVGLDAGGDTTLDEFDGSGPVVVVVGSEGKGLSRLVRENCDAILSIPMAGPV 300 Query 288 ESLNASVAAGVVLAEIARQRR 308 ESLNASVAAGVVLA+IAR+RR Sbjct 301 ESLNASVAAGVVLADIARRRR 321 >gi|343925929|ref|ZP_08765444.1| putative RNA methyltransferase [Gordonia alkanivorans NBRC 16433] gi|343764280|dbj|GAA12370.1| putative RNA methyltransferase [Gordonia alkanivorans NBRC 16433] Length=320 Score = 404 bits (1037), Expect = 1e-110, Method: Compositional matrix adjust. Identities = 211/319 (67%), Positives = 247/319 (78%), Gaps = 10/319 (3%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPA---------AK 51 M GNS+R+GA+RKSGTKKG VGSGGQRRRGLE RG TP A RP+HPA + Sbjct 1 MAGNSKRKGAIRKSGTKKGQVVGSGGQRRRGLEARGATPKAVDRPYHPAHKKAKAAAKSG 60 Query 52 RARAQPRRPVKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADS 111 R+ + + E VLGRNPV+ECLRAGVPATALY+A +E DER+ E V A D Sbjct 61 AGRSGGGAARAKDEGPEYVLGRNPVVECLRAGVPATALYIATNSEPDERVAEAVKIAGDQ 120 Query 112 GIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLA-AALDQPPALLVALDNLSD 170 I+I+E+ + +LDR++ N +HQGIALQVP Y Y HPDDL+A A P LLVALDN++D Sbjct 121 AISILEVGKPELDRLSTNGMHQGIALQVPEYRYTHPDDLMADAKASGTPPLLVALDNITD 180 Query 171 PRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWA 230 PRNLGA++RSVAAFGGHGV+IP RRSASVTAVAWRTSAGAAAR+PVARATNLTRTLK WA Sbjct 181 PRNLGAVIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWA 240 Query 231 DRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESL 290 D G +++GLDA G LD+ DGT V+VVGSEGKGLSRLVR++CD ++SIPMA ESL Sbjct 241 DSGAQLVGLDADGDVTLDEYDGTGPTVIVVGSEGKGLSRLVRESCDSILSIPMAGDVESL 300 Query 291 NASVAAGVVLAEIARQRRR 309 NASVAAGVVLAE ARQRRR Sbjct 301 NASVAAGVVLAEFARQRRR 319 >gi|331699814|ref|YP_004336053.1| TrmH family RNA methyltransferase [Pseudonocardia dioxanivorans CB1190] gi|326954503|gb|AEA28200.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia dioxanivorans CB1190] Length=329 Score = 392 bits (1006), Expect = 5e-107, Method: Compositional matrix adjust. Identities = 213/327 (66%), Positives = 254/327 (78%), Gaps = 19/327 (5%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNS+RRGA+RK GTKKGA VGSGGQRRRGL+G+GPTPPA LRP HPAA++A + Sbjct 1 MAGNSKRRGAIRKDGTKKGAVVGSGGQRRRGLQGKGPTPPASLRPGHPAARKAARDAKAQ 60 Query 61 VKRA-----------------DETETVLGRNPVLECLRAGVPATALYVALGTEADERLTE 103 K A + ETVLGRNPV+ECLRAGVPATAL+VA+G ADER+ E Sbjct 61 AKVAGRQGGGAGNRSRRAGDGETPETVLGRNPVVECLRAGVPATALHVAVGATADERVKE 120 Query 104 CVARAADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQP-PALL 162 V AAD+GI+I+E+ R DLDRM LHQG+AL VPPY YAHPD+LL AA+ PAL+ Sbjct 121 AVHLAADAGISILEVPRNDLDRMAGGALHQGVALVVPPYEYAHPDELLEAAVGSGRPALI 180 Query 163 VALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNL 222 ALD + DPRNLGA+VRSV+AFGGHGV++PQRR+A +TAVAWRTSAG AAR+PVARATNL Sbjct 181 AALDGVMDPRNLGAVVRSVSAFGGHGVVVPQRRAAGMTAVAWRTSAGTAARLPVARATNL 240 Query 223 TRTLKGWADRGVRVIGLDAGGGTALDDVD-GTDSLVVVVGSEGKGLSRLVRQNCDEVVSI 281 TRTL+ +A+ G+ V GL A G ++DD D TD LV+V+GSEGKGLSRLVR+ CD VSI Sbjct 241 TRTLQEYANTGLMVAGLAADGDVSIDDFDLATDPLVLVIGSEGKGLSRLVRETCDVTVSI 300 Query 282 PMAAQAESLNASVAAGVVLAEIARQRR 308 P+A + ESLNASVAAGVVLAE+AR+RR Sbjct 301 PLAREVESLNASVAAGVVLAEVARRRR 327 >gi|326383075|ref|ZP_08204764.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis NRRL B-59395] gi|326198211|gb|EGD55396.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis NRRL B-59395] Length=318 Score = 391 bits (1004), Expect = 8e-107, Method: Compositional matrix adjust. Identities = 207/316 (66%), Positives = 251/316 (80%), Gaps = 8/316 (2%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRAR-----A 55 M GNS+RRGA RK+G+KKG VGSGGQRRRGLEGRG TP A R +HPA K+A+ + Sbjct 1 MAGNSQRRGATRKTGSKKGQVVGSGGQRRRGLEGRGATPKAVDRTYHPAHKKAKAAAKAS 60 Query 56 QPRRPVKRADET--ETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGI 113 RR +++++ E V+GRNPV+ECLRA VPATALYV +ADER+ E V A D GI Sbjct 61 NTRRTHRKSEDGGPEYVVGRNPVVECLRAEVPATALYVMTTIDADERVKEAVHTAGDRGI 120 Query 114 AIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPR 172 +I+E+ + +LDRM+ N LHQG+ALQVP Y YAHP+DL+A AL A LLVALDN++DPR Sbjct 121 SILEVGKPELDRMSPNGLHQGLALQVPEYQYAHPEDLMADALAGSSAPLLVALDNITDPR 180 Query 173 NLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADR 232 NLGA++RSVAAFGGHGV+IPQRRSA +TAVAWRTSAGAAAR+PVA NL RTL WA + Sbjct 181 NLGAVIRSVAAFGGHGVVIPQRRSAGMTAVAWRTSAGAAARLPVATTPNLNRTLLDWAKK 240 Query 233 GVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNA 292 G +++GLDAGG +LDD DGT V+VVGSEGKGLSRLVR+NCD ++SIP+A+ ESLNA Sbjct 241 GAQIVGLDAGGDVSLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIPIASDVESLNA 300 Query 293 SVAAGVVLAEIARQRR 308 SVAAGVVL+E ARQRR Sbjct 301 SVAAGVVLSEFARQRR 316 >gi|296138340|ref|YP_003645583.1| TrmH family RNA methyltransferase [Tsukamurella paurometabola DSM 20162] gi|296026474|gb|ADG77244.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella paurometabola DSM 20162] Length=324 Score = 387 bits (994), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 216/321 (68%), Positives = 254/321 (80%), Gaps = 13/321 (4%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQ---- 56 M GNS+RRGAVRKSGTKKG GSGG RRRGLEGRG TP A RP+HPA K+ARA Sbjct 1 MAGNSQRRGAVRKSGTKKGQVTGSGGVRRRGLEGRGATPAAKDRPYHPAHKKARAAAKAA 60 Query 57 ---PRRPVKRA-----DETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARA 108 RRP K A D E VLGRNPV+ECLRA VPATALYVA+G + DERLTE V A Sbjct 61 ANPQRRPQKVAGRAAEDGPEYVLGRNPVVECLRADVPATALYVAVGAQNDERLTESVRMA 120 Query 109 ADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDN 167 AD GI+I+E+ RA+LDRM+ N LHQGIALQ+PPY+YAHP+DLL A D+ A ++VALDN Sbjct 121 ADKGISILEVQRAELDRMSENGLHQGIALQIPPYSYAHPEDLLRRAADRGEAPMIVALDN 180 Query 168 LSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLK 227 ++DPRNLGA++RS AAFGGHGV+IP RRSA++TAV WRTSAGAAAR+PVA+A NL RTL Sbjct 181 ITDPRNLGAVIRSAAAFGGHGVVIPSRRSAAITAVTWRTSAGAAARLPVAQAPNLNRTLA 240 Query 228 GWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQA 287 +A G++++GLDAGG LDD +VVVVGSEGKGLSRLVR+NCD ++SIP+A+ Sbjct 241 DYAAAGLQIVGLDAGGDVTLDDYRADTGVVVVVGSEGKGLSRLVRENCDSILSIPIASSV 300 Query 288 ESLNASVAAGVVLAEIARQRR 308 ESLNASVAAGVVLA+ ARQRR Sbjct 301 ESLNASVAAGVVLADFARQRR 321 >gi|336324793|ref|YP_004604759.1| putative RNA methyltransferase [Corynebacterium resistens DSM 45100] gi|336100775|gb|AEI08595.1| putative RNA methyltransferase [Corynebacterium resistens DSM 45100] Length=316 Score = 387 bits (993), Expect = 2e-105, Method: Compositional matrix adjust. Identities = 197/315 (63%), Positives = 240/315 (77%), Gaps = 8/315 (2%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNSRR GAVRK+ +KGA GSGGQRR+GL GR TP A R +HPA +R + RR Sbjct 1 MAGNSRRTGAVRKT-ERKGAAKGSGGQRRKGLRGRKATPKAEDRTYHPAHRRKKEAERRA 59 Query 61 V------KRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIA 114 +RAD E V+GRNPV+ECL A VPATALYVA GT+ DERL+E V AD GI+ Sbjct 60 SGAHNRHERADAVELVVGRNPVVECLHANVPATALYVAEGTKNDERLSEAVHTCADRGIS 119 Query 115 IVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQ-PPALLVALDNLSDPRN 173 ++E+ R +LDRMT N +HQGI LQ+PPY Y +DL+ + + P ++VALDN++DPRN Sbjct 120 VLEVSRQELDRMTGNGMHQGIGLQIPPYKYTEVEDLIESTANAATPGMIVALDNITDPRN 179 Query 174 LGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRG 233 LGA++RSVAAFGGHGV+IP+RRSASVTAVAWRTSAG AAR+PVA+ATN+ RTLK + G Sbjct 180 LGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNMVRTLKQFQQAG 239 Query 234 VRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNAS 293 +V+GLDAGG LD DGT +V+VVGSEGKGLSRLV + CD ++S+PMA ESLNAS Sbjct 240 YQVVGLDAGGDHTLDTYDGTTPVVIVVGSEGKGLSRLVSETCDTIMSVPMAKWVESLNAS 299 Query 294 VAAGVVLAEIARQRR 308 VAAGVVL+E ARQRR Sbjct 300 VAAGVVLSEFARQRR 314 >gi|68535387|ref|YP_250092.1| putative rRNA methylase [Corynebacterium jeikeium K411] gi|68262986|emb|CAI36474.1| putative rRNA methylase [Corynebacterium jeikeium K411] Length=318 Score = 380 bits (976), Expect = 1e-103, Method: Compositional matrix adjust. Identities = 197/316 (63%), Positives = 235/316 (75%), Gaps = 9/316 (2%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GN++R G VRK KKGA GSGGQ RR L G+G TP A R +H A KR +A RR Sbjct 1 MAGNTQRSGGVRKK-NKKGATKGSGGQGRRSLRGKGATPKAEDRVYHAAYKRKQAAKRRA 59 Query 61 -------VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGI 113 K ++ E V+GRNPV+ECL A VPATALYVA GT+ DERL E V AD GI Sbjct 60 SGAHDRFAKDDNQVELVVGRNPVIECLHAKVPATALYVAEGTKNDERLAEAVHTCADRGI 119 Query 114 AIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQP-PALLVALDNLSDPR 172 +++E+ RA+LDRMT N +HQGI LQ+PPY Y +DL+ A P P L+VALDN++DPR Sbjct 120 SVLEVSRAELDRMTGNGMHQGIGLQIPPYQYTQVEDLIQQAASAPQPGLVVALDNITDPR 179 Query 173 NLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADR 232 NLGA++RSVAAFGGHGV+IP+RRSASVTAVAWRTSAG AAR+PVA+ATN+ R+LK + Sbjct 180 NLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVAKATNMVRSLKQFQQA 239 Query 233 GVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNA 292 G +V+GLDAGG LD DGT V+VVGSEGKGLSRLV + CD ++SIPMA ESLNA Sbjct 240 GYQVVGLDAGGDHTLDTYDGTTPTVIVVGSEGKGLSRLVSETCDTIMSIPMAKWVESLNA 299 Query 293 SVAAGVVLAEIARQRR 308 SVAAGVVL+E ARQRR Sbjct 300 SVAAGVVLSEFARQRR 315 >gi|333918034|ref|YP_004491615.1| putative tRNA/rRNA methyltransferase [Amycolicicoccus subflavus DQS3-9A1] gi|333480255|gb|AEF38815.1| Putative tRNA/rRNA methyltransferase [Amycolicicoccus subflavus DQS3-9A1] Length=323 Score = 380 bits (976), Expect = 2e-103, Method: Compositional matrix adjust. Identities = 210/321 (66%), Positives = 255/321 (80%), Gaps = 12/321 (3%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAA---------K 51 M GNSRR+GAVRK+G+KKGA GSGG+R+RGL GRG TPPA +R HPAA K Sbjct 1 MAGNSRRQGAVRKAGSKKGATKGSGGKRKRGLSGRGATPPAEMRVGHPAARRAAAAARLK 60 Query 52 RARAQPRRPVKRADET-ETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAAD 110 ++++ KRA E E VLGRNPV+ECLRAGVPATAL++A+G+E DER+TE V A + Sbjct 61 QSKSHTEAARKRAAEGPELVLGRNPVVECLRAGVPATALFLAVGSEPDERVTEAVHYAGE 120 Query 111 SGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAA-LDQPPALLVALDNLS 169 GI+I+E+ R DLD+MT N LHQGIALQVPPY YAHP++L+ A+ P L+VALDN++ Sbjct 121 RGISILEVPRGDLDKMTTNGLHQGIALQVPPYQYAHPEELIDASRSSDEPGLVVALDNIT 180 Query 170 DPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGW 229 DPRNLGA++RS AFGG+GVLIP+RRSASVTAVAWRTSAGAAAR+PVARATNLTR LK + Sbjct 181 DPRNLGAVIRSTGAFGGNGVLIPERRSASVTAVAWRTSAGAAARVPVARATNLTRALKAF 240 Query 230 ADRGVRVIGLDAGGGTALDDVDGTDS-LVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAE 288 A+ G + GLD+ G +LD+ TD LVVVVGSEGKGLSRLV++ CD +VS+PMA E Sbjct 241 AESGYFIAGLDSEGAVSLDEFTSTDMPLVVVVGSEGKGLSRLVKETCDVIVSVPMAGDVE 300 Query 289 SLNASVAAGVVLAEIARQRRR 309 SLNASVAAGVVLA+IARQRR+ Sbjct 301 SLNASVAAGVVLADIARQRRQ 321 >gi|300790491|ref|YP_003770782.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] gi|299800005|gb|ADJ50380.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32] gi|340532176|gb|AEK47381.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei S699] Length=318 Score = 380 bits (976), Expect = 2e-103, Method: Compositional matrix adjust. Identities = 196/313 (63%), Positives = 244/313 (78%), Gaps = 5/313 (1%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNSRR+GA+RK+GTKKGA VGSGGQRR+ LEG+GPTP A RP H A + A A +R Sbjct 1 MAGNSRRQGAIRKTGTKKGAVVGSGGQRRKALEGKGPTPKAEDRPGHKAYRSANAATKRD 60 Query 61 V---KRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVE 117 K+AD+ E + GRNPV+E LRAGVPATALYVAL E D+R+ + V A D GI+I+E Sbjct 61 QARQKKADKPELIAGRNPVVEALRAGVPATALYVALNIEIDDRVNDAVRLAGDKGISILE 120 Query 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176 + R +LDR T +HQG+ LQVPP+ YAHPDDL+AAA + L VALD ++DPRNLGA Sbjct 121 IPREELDRKTNRAVHQGLGLQVPPFEYAHPDDLMAAARNSGEVPLFVALDGVTDPRNLGA 180 Query 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236 ++RS AAFG HGVL+P+RRSA +TAVAWRTSAG AA++P+A ATNLTR LK WA+ G+ + Sbjct 181 VIRSAAAFGAHGVLLPERRSAGMTAVAWRTSAGTAAKLPIAVATNLTRQLKAWANDGLML 240 Query 237 IGLDAGGGTALDDVD-GTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVA 295 +GLDA G +D+++ D LV+V+GSEG+GLSRLVR+ CD VSIPMAA ESLNASVA Sbjct 241 VGLDADGSVDIDELELAADPLVIVLGSEGRGLSRLVRETCDATVSIPMAAGVESLNASVA 300 Query 296 AGVVLAEIARQRR 308 AGV+LAE+AR+RR Sbjct 301 AGVLLAEVARRRR 313 >gi|325000167|ref|ZP_08121279.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1] Length=325 Score = 379 bits (972), Expect = 5e-103, Method: Compositional matrix adjust. Identities = 209/325 (65%), Positives = 248/325 (77%), Gaps = 14/325 (4%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRA------- 53 M GNS+RRGAVRK GTKKG +GSGGQ RR L G+GPTP +RP HP K A Sbjct 1 MAGNSKRRGAVRKEGTKKGPVIGSGGQPRRSLRGKGPTPSGEMRPGHPKQKAAARRERQD 60 Query 54 -RAQPRRPV--KRADET--ETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARA 108 + Q RRPV +R D ETVLGRNPV+ECLRAGVP+TAL+VA G ADER+ E V+ A Sbjct 61 QQQQRRRPVAGRRGDGEGPETVLGRNPVVECLRAGVPSTALHVATGMSADERVAEAVSLA 120 Query 109 ADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQP-PALLVALDN 167 A+ GI+I+E+ R DLDR+T LHQG+ALQVPPY+YAHPD+LL AA D PAL VALD Sbjct 121 AEQGISILEVPRNDLDRLTGGALHQGLALQVPPYSYAHPDELLEAAADSGRPALTVALDG 180 Query 168 LSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLK 227 ++DPRNLGA+VRSV AFGGHGV++PQRR+A +TAVAWRTSAG A R+PVARATNLTRTL+ Sbjct 181 VTDPRNLGAVVRSVGAFGGHGVVVPQRRAAGMTAVAWRTSAGTAVRVPVARATNLTRTLR 240 Query 228 GWADRGVRVIGLDAGGGTALDDVD-GTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQ 286 +A G+ V+GL A G +LD+ D T L +V GSEGKGLSRLVR+ CD VSIP+A + Sbjct 241 EYASAGLMVVGLAADGDVSLDEFDLATGPLALVTGSEGKGLSRLVRETCDLTVSIPLAGR 300 Query 287 AESLNASVAAGVVLAEIARQRRRPR 311 ESLNASVA GVVLAE+AR+RR R Sbjct 301 VESLNASVATGVVLAEVARRRRLER 325 >gi|260578386|ref|ZP_05846300.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258603408|gb|EEW16671.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium ATCC 43734] Length=318 Score = 379 bits (972), Expect = 5e-103, Method: Compositional matrix adjust. Identities = 197/316 (63%), Positives = 234/316 (75%), Gaps = 9/316 (2%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GN++R G VRK KKGA GSGGQ RR L G+G TP A R +H A KR +A RR Sbjct 1 MAGNTQRSGGVRKK-NKKGATKGSGGQGRRSLRGKGATPKAEDRVYHAAYKRKQAAKRRA 59 Query 61 -------VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGI 113 K ++ E V+GRNPV+ECL A VPATALYVA GT+ DERL E V AD GI Sbjct 60 SGAHDRFAKDDNQVELVVGRNPVIECLHAKVPATALYVAEGTKNDERLAEAVHTCADRGI 119 Query 114 AIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQP-PALLVALDNLSDPR 172 +++E+ RA+LDRMT N +HQGI LQ+PPY Y +DL+ A P P L+VALDN++DPR Sbjct 120 SVLEVSRAELDRMTGNGMHQGIGLQIPPYQYTQVEDLIQQAASAPQPGLVVALDNITDPR 179 Query 173 NLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADR 232 NLGA++RSVAAFGGHGV+IP+RRSASVTAVAWRTSAG AAR+PVA+ATN+ R+LK Sbjct 180 NLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVAKATNMVRSLKQLQQA 239 Query 233 GVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNA 292 G +V+GLDAGG LD DGT V+VVGSEGKGLSRLV + CD ++SIPMA ESLNA Sbjct 240 GYQVVGLDAGGDHTLDTYDGTTPTVIVVGSEGKGLSRLVSETCDTIMSIPMAKWVESLNA 299 Query 293 SVAAGVVLAEIARQRR 308 SVAAGVVL+E ARQRR Sbjct 300 SVAAGVVLSEFARQRR 315 >gi|340793476|ref|YP_004758939.1| hypothetical protein CVAR_0516 [Corynebacterium variabile DSM 44702] gi|340533386|gb|AEK35866.1| hypothetical protein CVAR_0516 [Corynebacterium variabile DSM 44702] Length=318 Score = 371 bits (952), Expect = 1e-100, Method: Compositional matrix adjust. Identities = 198/315 (63%), Positives = 238/315 (76%), Gaps = 8/315 (2%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GN +RRGAVRK+ +KG+ GSGGQ RRGL+G+ TP A R +H K +A RR Sbjct 1 MAGNDKRRGAVRKT-ERKGSTKGSGGQVRRGLKGKKATPKAEDRVYHAKYKAKKAAERRD 59 Query 61 VKRA-----DET-ETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIA 114 R D T E V+GRNPV+ECL A VP+TALYVALGT D+RL+E V AA+ GI Sbjct 60 SGRQAKKDPDNTPELVVGRNPVIECLHAHVPSTALYVALGTGNDDRLSEAVHTAAERGIP 119 Query 115 IVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQP-PALLVALDNLSDPRN 173 ++E+ R ++DRMT N +HQGI LQVPPY YA DDL+ A D P L+V LDN++DPRN Sbjct 120 VLEVARDEMDRMTGNGMHQGIGLQVPPYKYAADDDLIERAKDSGRPGLIVVLDNITDPRN 179 Query 174 LGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRG 233 LGA++RSVAAFGGHGV+IP+RRSASVTAV WRTSAG AAR+PVARATNL R+LK + G Sbjct 180 LGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGTAARLPVARATNLVRSLKKFQQSG 239 Query 234 VRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNAS 293 +V+GLDAGG LD DGTD +VVVVGSEGKGLSRLV + CD+++SIPM + ESLNAS Sbjct 240 YQVVGLDAGGSHTLDTYDGTDPVVVVVGSEGKGLSRLVGETCDDILSIPMTSTVESLNAS 299 Query 294 VAAGVVLAEIARQRR 308 VAAGVVL+E ARQRR Sbjct 300 VAAGVVLSEFARQRR 314 >gi|25029071|ref|NP_739125.1| hypothetical protein CE2515 [Corynebacterium efficiens YS-314] gi|259505937|ref|ZP_05748839.1| TrmH family group 3 RNA methyltransferase [Corynebacterium efficiens YS-314] gi|23494358|dbj|BAC19325.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259166418|gb|EEW50972.1| TrmH family group 3 RNA methyltransferase [Corynebacterium efficiens YS-314] Length=313 Score = 370 bits (951), Expect = 1e-100, Method: Compositional matrix adjust. Identities = 193/311 (63%), Positives = 233/311 (75%), Gaps = 4/311 (1%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GN R G VRK+ KKGA GSGGQ RRGL G+GPTP A R +H A KR + RR Sbjct 1 MAGNDGRHGGVRKT-NKKGAQKGSGGQIRRGLRGKGPTPKAEDRVYHAAHKRKLERQRRE 59 Query 61 VKRA--DETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVEL 118 R ++TE V+GRNPVLECL A VP+TALYVA G DERL+E V AAD I ++E+ Sbjct 60 KGRHQREQTELVVGRNPVLECLHARVPSTALYVAEGAANDERLSESVRLAADRSIPVLEV 119 Query 119 LRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQP-PALLVALDNLSDPRNLGAI 177 + +LDRMT N +HQGI L +PP+ YA DLLA A P P + V LDN++DPRNLGA+ Sbjct 120 NKLELDRMTGNGMHQGIGLAIPPFEYADIHDLLADAAQSPKPGMFVILDNITDPRNLGAV 179 Query 178 VRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVI 237 +RSV AFGG+GV+IP+RRSASVTAVAWRTSAG AAR+PVA+ TN+TRT+K + G +V+ Sbjct 180 IRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRTIKEFQKNGYQVV 239 Query 238 GLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAG 297 GLDAGG LD DGTD++V+VVGSEGKG+SRLVR+NCD ++SIP ESLNASVAAG Sbjct 240 GLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIPTEPWVESLNASVAAG 299 Query 298 VVLAEIARQRR 308 VVL+E ARQRR Sbjct 300 VVLSEFARQRR 310 >gi|302530721|ref|ZP_07283063.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] gi|302439616|gb|EFL11432.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4] Length=318 Score = 370 bits (949), Expect = 2e-100, Method: Compositional matrix adjust. Identities = 192/313 (62%), Positives = 238/313 (77%), Gaps = 5/313 (1%) Query 1 MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP 60 M GNS+R+GA+RK+GTKKGA VGSGGQRR+ LEG+GPTP A RP H A + A A +R Sbjct 1 MAGNSQRKGAIRKTGTKKGAVVGSGGQRRKALEGKGPTPKAEDRPGHKAYRAANAANKRD 60 Query 61 V---KRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVE 117 K+AD E + GRNPV+E LRA VP TALYVAL + D+R+ E V A D GI+I+E Sbjct 61 QARQKKADRPELIAGRNPVVEALRADVPGTALYVALNIDIDDRVNEAVRLAGDKGISILE 120 Query 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176 + R +LDR T +HQG+ LQVPP+ YAHPDDL+ AA D L VALD ++DPRNLGA Sbjct 121 IPREELDRKTNRAMHQGLGLQVPPFEYAHPDDLMQAARDSGNTPLFVALDGVTDPRNLGA 180 Query 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236 ++RS AAFG GVL+P+RRSA +TAVAWRTSAG AA++P+A ATNLTR L+ WA +G+ + Sbjct 181 VIRSAAAFGAQGVLLPERRSAGMTAVAWRTSAGTAAKLPIAVATNLTRQLRAWASKGLMI 240 Query 237 IGLDAGGGTALDDVD-GTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVA 295 +GLDA G +D ++ D LVVV+GSEG+GLSRLVR+ CD VSIPMAA ESLNASVA Sbjct 241 VGLDADGTVDIDALELAADPLVVVLGSEGRGLSRLVRETCDATVSIPMAAGVESLNASVA 300 Query 296 AGVVLAEIARQRR 308 AGV+LAE+AR+RR Sbjct 301 AGVLLAEVARRRR 313 Lambda K H 0.317 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 567840616038 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40