BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3583c
Length=162
Score E
Sequences producing significant alignments: (Bits) Value
gi|254234156|ref|ZP_04927480.1| hypothetical protein TBCG_03510 ... 325 2e-87
gi|15610719|ref|NP_218100.1| transcription factor [Mycobacterium... 325 2e-87
gi|240172169|ref|ZP_04750828.1| transcriptional regulator, CarD ... 323 6e-87
gi|118470459|ref|YP_890299.1| CarD family transcriptional regula... 322 2e-86
gi|224992000|ref|YP_002646689.1| putative transcription factor [... 322 2e-86
gi|15827084|ref|NP_301347.1| transcription factor [Mycobacterium... 320 5e-86
gi|145222036|ref|YP_001132714.1| CarD family transcriptional reg... 320 5e-86
gi|333992515|ref|YP_004525129.1| transcriptional regulator [Myco... 319 9e-86
gi|120406288|ref|YP_956117.1| CarD family transcriptional regula... 319 1e-85
gi|312138097|ref|YP_004005433.1| card like transcriptional regul... 317 5e-85
gi|54022399|ref|YP_116641.1| putative transcriptional regulator ... 315 2e-84
gi|111021431|ref|YP_704403.1| CarD family transcriptional regula... 313 6e-84
gi|226304175|ref|YP_002764133.1| hypothetical protein RER_06860 ... 313 7e-84
gi|108801703|ref|YP_641900.1| CarD family transcriptional regula... 309 7e-83
gi|169627671|ref|YP_001701320.1| putative CarD-like transcriptio... 305 1e-81
gi|333918031|ref|YP_004491612.1| putative transcriptional regula... 302 9e-81
gi|296138335|ref|YP_003645578.1| CarD family transcriptional reg... 297 4e-79
gi|256374519|ref|YP_003098179.1| CarD family transcriptional reg... 292 1e-77
gi|331699819|ref|YP_004336058.1| CarD family transcriptional reg... 291 2e-77
gi|134097051|ref|YP_001102712.1| transcription regulator CarD [S... 291 2e-77
gi|302530715|ref|ZP_07283057.1| transcription regulator CarD [St... 291 3e-77
gi|300790484|ref|YP_003770775.1| CarD family transcriptional reg... 288 2e-76
gi|257057465|ref|YP_003135297.1| transcriptional regulator, CarD... 285 1e-75
gi|72163306|ref|YP_290963.1| CarD family transcriptional regulat... 284 3e-75
gi|311896848|dbj|BAJ29256.1| putative CarD family transcriptiona... 281 3e-74
gi|317507825|ref|ZP_07965526.1| CarD/TRCF domain-containing prot... 281 3e-74
gi|296392879|ref|YP_003657763.1| CarD family transcriptional reg... 280 5e-74
gi|337766488|emb|CCB75199.1| Transcriptional factor regulator [S... 280 6e-74
gi|317126037|ref|YP_004100149.1| CarD family transcriptional reg... 280 6e-74
gi|302544415|ref|ZP_07296757.1| CarD family transcriptional regu... 278 2e-73
gi|320009411|gb|ADW04261.1| transcriptional regulator, CarD fami... 278 2e-73
gi|284989246|ref|YP_003407800.1| CarD family transcriptional reg... 278 2e-73
gi|21222627|ref|NP_628406.1| transcriptional factor regulator [S... 276 5e-73
gi|297563240|ref|YP_003682214.1| CarD family transcriptional reg... 276 8e-73
gi|269124964|ref|YP_003298334.1| CarD family transcriptional reg... 276 9e-73
gi|333026128|ref|ZP_08454192.1| putative transcriptional factor ... 275 1e-72
gi|86742930|ref|YP_483330.1| CarD family transcriptional regulat... 274 3e-72
gi|312194274|ref|YP_004014335.1| CarD family transcriptional reg... 274 3e-72
gi|291453071|ref|ZP_06592461.1| transcriptional factor regulator... 274 4e-72
gi|111225860|ref|YP_716654.1| putative CarD-like transcriptional... 273 6e-72
gi|296268490|ref|YP_003651122.1| CarD family transcriptional reg... 273 6e-72
gi|271962514|ref|YP_003336710.1| carD family transcriptional reg... 273 9e-72
gi|258651110|ref|YP_003200266.1| CarD family transcriptional reg... 272 1e-71
gi|319948870|ref|ZP_08022983.1| CarD family transcriptional regu... 268 2e-70
gi|152964866|ref|YP_001360650.1| CarD family transcriptional reg... 266 7e-70
gi|145596771|ref|YP_001161068.1| transcription factor CarD [Sali... 266 1e-69
gi|238061419|ref|ZP_04606128.1| CarD family transcriptional regu... 265 2e-69
gi|302870278|ref|YP_003838915.1| transcription factor CarD [Micr... 265 2e-69
gi|262200966|ref|YP_003272174.1| transcription factor CarD [Gord... 265 2e-69
gi|343925920|ref|ZP_08765435.1| hypothetical protein GOALK_050_0... 263 5e-69
>gi|254234156|ref|ZP_04927480.1| hypothetical protein TBCG_03510 [Mycobacterium tuberculosis C]
gi|124603824|gb|EAY61787.1| hypothetical protein TBCG_03510 [Mycobacterium tuberculosis C]
Length=174
Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 162/162 (100%), Positives = 162/162 (100%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD
Sbjct 13 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 72
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL
Sbjct 73 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 132
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS
Sbjct 133 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 174
>gi|15610719|ref|NP_218100.1| transcription factor [Mycobacterium tuberculosis H37Rv]
gi|15843196|ref|NP_338233.1| hypothetical protein MT3689 [Mycobacterium tuberculosis CDC1551]
gi|31794760|ref|NP_857253.1| putative transcription factor [Mycobacterium bovis AF2122/97]
89 more sequence titles
Length=162
Score = 325 bits (832), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 162/162 (100%), Positives = 162/162 (100%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD
Sbjct 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL
Sbjct 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS
Sbjct 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
>gi|240172169|ref|ZP_04750828.1| transcriptional regulator, CarD family protein [Mycobacterium
kansasii ATCC 12478]
gi|296166638|ref|ZP_06849065.1| CarD family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898010|gb|EFG77589.1| CarD family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=162
Score = 323 bits (828), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 161/162 (99%), Positives = 162/162 (100%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPA+NAEYVGVRD
Sbjct 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL
Sbjct 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS
Sbjct 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
>gi|118470459|ref|YP_890299.1| CarD family transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
gi|118171746|gb|ABK72642.1| transcriptional regulator, CarD family protein [Mycobacterium
smegmatis str. MC2 155]
Length=162
Score = 322 bits (824), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/162 (99%), Positives = 162/162 (100%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAAL+EAIETRTIKGEQKEYLVLKVAQGDLTVRVPA+NAEYVGVRD
Sbjct 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL
Sbjct 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAE+TDDAKAETILDEVLAAAS
Sbjct 121 SAGEKRMLAKARQILVGELALAENTDDAKAETILDEVLAAAS 162
>gi|224992000|ref|YP_002646689.1| putative transcription factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|224775115|dbj|BAH27921.1| putative transcription factor [Mycobacterium bovis BCG str. Tokyo
172]
Length=162
Score = 322 bits (824), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 161/162 (99%), Positives = 161/162 (99%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYP HGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD
Sbjct 1 MIFKVGDTVVYPRHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL
Sbjct 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS
Sbjct 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
>gi|15827084|ref|NP_301347.1| transcription factor [Mycobacterium leprae TN]
gi|221229562|ref|YP_002502978.1| putative transcription factor [Mycobacterium leprae Br4923]
gi|13092632|emb|CAC29828.1| putative transcription factor [Mycobacterium leprae]
gi|219932669|emb|CAR70413.1| putative transcription factor [Mycobacterium leprae Br4923]
Length=165
Score = 320 bits (819), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 158/162 (98%), Positives = 161/162 (99%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAALVEAIETRTI GEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD
Sbjct 4 MIFKVGDTVVYPHHGAALVEAIETRTINGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 63
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLD+VFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKV+EVVRDLWRRDQ+RGL
Sbjct 64 VVGQEGLDQVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVSEVVRDLWRRDQDRGL 123
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS
Sbjct 124 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 165
>gi|145222036|ref|YP_001132714.1| CarD family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315446222|ref|YP_004079101.1| CarD family transcriptional regulator [Mycobacterium sp. Spyr1]
gi|145214522|gb|ABP43926.1| transcriptional regulator, CarD family [Mycobacterium gilvum
PYR-GCK]
gi|315264525|gb|ADU01267.1| transcriptional regulator, CarD family [Mycobacterium sp. Spyr1]
Length=162
Score = 320 bits (819), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 158/162 (98%), Positives = 161/162 (99%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAAL+EAIETRTIKGEQKEYLVLKVAQGDLTVRVPA+NAEYVGVRD
Sbjct 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL
Sbjct 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAE+TDDAKA TILDEVLAAAS
Sbjct 121 SAGEKRMLAKARQILVGELALAENTDDAKASTILDEVLAAAS 162
>gi|333992515|ref|YP_004525129.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333488483|gb|AEF37875.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=162
Score = 319 bits (817), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 158/162 (98%), Positives = 162/162 (100%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAAL+EAIETRTIKGEQK+YLVLKVAQGDLTVRVPAENAEYVGVRD
Sbjct 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKDYLVLKVAQGDLTVRVPAENAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDV+KVAEVVRDLWRRDQERGL
Sbjct 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVHKVAEVVRDLWRRDQERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAE+TDDAKAETILDEVLAAAS
Sbjct 121 SAGEKRMLAKARQILVGELALAENTDDAKAETILDEVLAAAS 162
>gi|120406288|ref|YP_956117.1| CarD family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119959106|gb|ABM16111.1| transcriptional regulator, CarD family [Mycobacterium vanbaalenii
PYR-1]
Length=162
Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/162 (97%), Positives = 161/162 (99%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAAL+EAIETRTIKGEQKEYLVLKV+QGDLTVRVPA+NAEYVGVRD
Sbjct 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVSQGDLTVRVPADNAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL
Sbjct 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAE+TDDAKA TILDEVLAAAS
Sbjct 121 SAGEKRMLAKARQILVGELALAENTDDAKASTILDEVLAAAS 162
>gi|312138097|ref|YP_004005433.1| card like transcriptional regulator [Rhodococcus equi 103S]
gi|325674999|ref|ZP_08154686.1| CarD family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|311887436|emb|CBH46748.1| CarD like transcriptional regulator [Rhodococcus equi 103S]
gi|325554585|gb|EGD24260.1| CarD family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length=162
Score = 317 bits (811), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 157/162 (97%), Positives = 160/162 (99%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAAL+EAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD
Sbjct 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRR+Q+RGL
Sbjct 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAE TDDAKAE ILDEVLAAAS
Sbjct 121 SAGEKRMLAKARQILVGELALAEGTDDAKAEIILDEVLAAAS 162
>gi|54022399|ref|YP_116641.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54013907|dbj|BAD55277.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=162
Score = 315 bits (807), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 155/162 (96%), Positives = 160/162 (99%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAAL+EAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD
Sbjct 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLD+VFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRR+Q+RGL
Sbjct 61 VVGQEGLDRVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAE TDD KAET+LDEVLAAAS
Sbjct 121 SAGEKRMLAKARQILVGELALAEGTDDGKAETLLDEVLAAAS 162
>gi|111021431|ref|YP_704403.1| CarD family transcriptional regulator [Rhodococcus jostii RHA1]
gi|226363787|ref|YP_002781569.1| hypothetical protein ROP_43770 [Rhodococcus opacus B4]
gi|110820961|gb|ABG96245.1| probable transcriptional regulator, CarD family protein [Rhodococcus
jostii RHA1]
gi|226242276|dbj|BAH52624.1| hypothetical protein [Rhodococcus opacus B4]
Length=162
Score = 313 bits (801), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 155/162 (96%), Positives = 159/162 (99%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAAL+EAIETRTIKGEQKEYLVLKVAQGDLTVRVPA+NAEYVGVRD
Sbjct 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRR+Q+RGL
Sbjct 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAE TD KAETILDEVLAAAS
Sbjct 121 SAGEKRMLAKARQILVGELALAEGTDSDKAETILDEVLAAAS 162
>gi|226304175|ref|YP_002764133.1| hypothetical protein RER_06860 [Rhodococcus erythropolis PR4]
gi|229494349|ref|ZP_04388112.1| transcriptional regulator, CarD family protein [Rhodococcus erythropolis
SK121]
gi|226183290|dbj|BAH31394.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
gi|229318711|gb|EEN84569.1| transcriptional regulator, CarD family protein [Rhodococcus erythropolis
SK121]
Length=162
Score = 313 bits (801), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 155/162 (96%), Positives = 159/162 (99%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAAL+EAIETRTIKGEQKEYLVLKVAQGDLTVRVPA+NAEYVGVRD
Sbjct 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRR+Q+RGL
Sbjct 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAE TD KAETILDEVLAAAS
Sbjct 121 SAGEKRMLAKARQILVGELALAEGTDTEKAETILDEVLAAAS 162
>gi|108801703|ref|YP_641900.1| CarD family transcriptional regulator [Mycobacterium sp. MCS]
gi|119870854|ref|YP_940806.1| CarD family transcriptional regulator [Mycobacterium sp. KMS]
gi|126437690|ref|YP_001073381.1| CarD family transcriptional regulator [Mycobacterium sp. JLS]
gi|108772122|gb|ABG10844.1| transcriptional regulator, CarD family [Mycobacterium sp. MCS]
gi|119696943|gb|ABL94016.1| transcriptional regulator, CarD family [Mycobacterium sp. KMS]
gi|126237490|gb|ABO00891.1| transcriptional regulator, CarD family [Mycobacterium sp. JLS]
Length=162
Score = 309 bits (792), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 153/162 (95%), Positives = 157/162 (97%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAAL+EAIETRTIKGEQKEYLVLKVAQGDLTVRVPA+NAEYVGVRD
Sbjct 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL
Sbjct 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAE+ +D KA ILDE LAAAS
Sbjct 121 SAGEKRMLAKARQILVGELALAENVEDEKATIILDEALAAAS 162
>gi|169627671|ref|YP_001701320.1| putative CarD-like transcriptional regulator [Mycobacterium abscessus
ATCC 19977]
gi|169239638|emb|CAM60666.1| Putative CarD-like transcriptional regulator [Mycobacterium abscessus]
Length=162
Score = 305 bits (781), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/162 (94%), Positives = 158/162 (98%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAAL+EAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD
Sbjct 1 MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVG+EGLD VFQVLRAPHTEEPTNWSRR+KAN EKLASGDV KVAEVVRDLWRR+QERGL
Sbjct 61 VVGREGLDTVFQVLRAPHTEEPTNWSRRFKANQEKLASGDVKKVAEVVRDLWRREQERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILVGELALAE+T+ AKA+TILDEVLAAAS
Sbjct 121 SAGEKRMLAKARQILVGELALAENTNAAKADTILDEVLAAAS 162
>gi|333918031|ref|YP_004491612.1| putative transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
gi|333480252|gb|AEF38812.1| Putative transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
Length=161
Score = 302 bits (774), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 148/161 (92%), Positives = 155/161 (97%), Gaps = 0/161 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M F+VGDTVVYPHHGAA ++AIETRTI+GEQKEYLVLKVAQGDLTVRVPA NAEYVGVRD
Sbjct 1 MNFRVGDTVVYPHHGAATIDAIETRTIRGEQKEYLVLKVAQGDLTVRVPAANAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQ+RGL
Sbjct 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAA 161
SAGEKRMLAKARQILVGELALAE TDD KAET+LDEVL A+
Sbjct 121 SAGEKRMLAKARQILVGELALAEGTDDVKAETLLDEVLVAS 161
>gi|296138335|ref|YP_003645578.1| CarD family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296026469|gb|ADG77239.1| transcriptional regulator, CarD family [Tsukamurella paurometabola
DSM 20162]
Length=162
Score = 297 bits (760), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/162 (90%), Positives = 155/162 (96%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
MIFKVGDTVVYPHHGAAL+EAIE +TI G ++EYLVLKVAQGDLTV+VPAENAE VGVRD
Sbjct 1 MIFKVGDTVVYPHHGAALIEAIEIKTIGGREREYLVLKVAQGDLTVKVPAENAEVVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRR+Q+RGL
Sbjct 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRML KARQILVGELALAE+TDD KAE++LDE LAAAS
Sbjct 121 SAGEKRMLTKARQILVGELALAEATDDGKAESLLDEALAAAS 162
>gi|256374519|ref|YP_003098179.1| CarD family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255918822|gb|ACU34333.1| transcriptional regulator, CarD family [Actinosynnema mirum DSM
43827]
Length=162
Score = 292 bits (747), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/162 (89%), Positives = 155/162 (96%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M+FKVG+TVVYPHHGAAL+EAIETR IKGE+K+YLVLKVAQGDLTVRVPA+NAE VGVRD
Sbjct 1 MVFKVGETVVYPHHGAALIEAIETRVIKGEEKKYLVLKVAQGDLTVRVPADNAEIVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVF+VLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRR+++RGL
Sbjct 61 VVGQEGLDKVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILV ELALAE TD+ KAE +LDEVLA AS
Sbjct 121 SAGEKRMLAKARQILVSELALAEGTDEDKAEVLLDEVLATAS 162
>gi|331699819|ref|YP_004336058.1| CarD family transcriptional regulator [Pseudonocardia dioxanivorans
CB1190]
gi|326954508|gb|AEA28205.1| transcriptional regulator, CarD family [Pseudonocardia dioxanivorans
CB1190]
Length=164
Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 141/162 (88%), Positives = 156/162 (97%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M+FKVG+TVVYPHHGAAL+EAIETRTIKGE+++YLVLKVAQGDLTVRVPAENAE VGVRD
Sbjct 1 MVFKVGETVVYPHHGAALIEAIETRTIKGEERKYLVLKVAQGDLTVRVPAENAEVVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLD+VF+VLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRR+++RGL
Sbjct 61 VVGQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILV ELALAE TD+ +AE +LDEVLA A+
Sbjct 121 SAGEKRMLAKARQILVSELALAEGTDEERAEVLLDEVLATAA 162
>gi|134097051|ref|YP_001102712.1| transcription regulator CarD [Saccharopolyspora erythraea NRRL
2338]
gi|291007008|ref|ZP_06564981.1| transcription regulator CarD [Saccharopolyspora erythraea NRRL
2338]
gi|133909674|emb|CAL99786.1| CarD family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
Length=162
Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 142/161 (89%), Positives = 154/161 (96%), Gaps = 0/161 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M+FKVG+TVVYPHHGAAL+EAIETR IKGE+K+YLVLKVAQGDLTVRVPA+NAE VGVRD
Sbjct 1 MVFKVGETVVYPHHGAALIEAIETRVIKGEEKQYLVLKVAQGDLTVRVPADNAEIVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLD+VF VLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRR+++RGL
Sbjct 61 VVGQEGLDRVFDVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAA 161
SAGEKRMLAKARQILV ELALAE TD+ KAET+LDEVLA A
Sbjct 121 SAGEKRMLAKARQILVSELALAEGTDEGKAETLLDEVLATA 161
>gi|302530715|ref|ZP_07283057.1| transcription regulator CarD [Streptomyces sp. AA4]
gi|302439610|gb|EFL11426.1| transcription regulator CarD [Streptomyces sp. AA4]
Length=163
Score = 291 bits (744), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 142/162 (88%), Positives = 154/162 (96%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M+FKVG+TVVYPHHGAAL+EAIETR IKGE+K+YLVLKVAQGDLTVRVPA+NAE VGVRD
Sbjct 1 MVFKVGETVVYPHHGAALIEAIETRVIKGEEKKYLVLKVAQGDLTVRVPADNAEIVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVF VLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRR+++RGL
Sbjct 61 VVGQEGLDKVFDVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILV ELALAE TD+ KAET+LDEVL A+
Sbjct 121 SAGEKRMLAKARQILVSELALAEGTDEGKAETLLDEVLETAT 162
>gi|300790484|ref|YP_003770775.1| CarD family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299799998|gb|ADJ50373.1| CarD family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|340532169|gb|AEK47374.1| CarD family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=163
Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/162 (88%), Positives = 153/162 (95%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M+FKVG+TVVYPHHGAAL+EAIETR IKGE+K+YLVLKVAQGDLTVRVPA+NAE VGVRD
Sbjct 1 MVFKVGETVVYPHHGAALIEAIETRVIKGEEKKYLVLKVAQGDLTVRVPADNAEIVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVF VLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRR+++RGL
Sbjct 61 VVGQEGLDKVFDVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQILV ELALAE TD+ KAE +LDEVL A+
Sbjct 121 SAGEKRMLAKARQILVSELALAEGTDEDKAEVLLDEVLETAT 162
>gi|257057465|ref|YP_003135297.1| transcriptional regulator, CarD family [Saccharomonospora viridis
DSM 43017]
gi|256587337|gb|ACU98470.1| transcriptional regulator, CarD family [Saccharomonospora viridis
DSM 43017]
Length=163
Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 138/161 (86%), Positives = 153/161 (96%), Gaps = 0/161 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M+FKVG+TVVYPHHGAAL+EAIETR IKGE+K+YLVLKVAQGDLTVRVPA+NAE VGVRD
Sbjct 1 MVFKVGETVVYPHHGAALIEAIETRVIKGEEKQYLVLKVAQGDLTVRVPADNAEIVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGL++VF VLRAPHT+EPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRR+++RGL
Sbjct 61 VVGQEGLNRVFDVLRAPHTDEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREKDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAA 161
SAGEKRMLAKARQILV ELALAE TD++KAE +LDEVL A
Sbjct 121 SAGEKRMLAKARQILVSELALAEGTDESKAEVLLDEVLETA 161
>gi|72163306|ref|YP_290963.1| CarD family transcriptional regulator [Thermobifida fusca YX]
gi|71917038|gb|AAZ56940.1| transcriptional regulator, CarD family [Thermobifida fusca YX]
Length=160
Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 140/160 (88%), Positives = 150/160 (94%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FKVGDTVVYPHHGAA +EAIETRTIKGE+K YLVLKV +GDLTVRVPA+NAE VGVRD
Sbjct 1 MTFKVGDTVVYPHHGAARIEAIETRTIKGEEKTYLVLKVDKGDLTVRVPADNAEEVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLD+VF+VLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRD+ERGL
Sbjct 61 VVGQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRMLAKARQILV ELALAE T++ KAE +LDEVLA
Sbjct 121 SAGEKRMLAKARQILVSELALAEKTNEDKAEALLDEVLAG 160
>gi|311896848|dbj|BAJ29256.1| putative CarD family transcriptional regulator [Kitasatospora
setae KM-6054]
Length=160
Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 138/160 (87%), Positives = 151/160 (95%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FKVGDTVVYPHHGAAL+EAIETR IKG K YLVLKV QGDLT+RVPAENAE+VGVRD
Sbjct 1 MTFKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVQQGDLTLRVPAENAEFVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLD+VF+VLRAP+TEEPTNWSRRYKANLEKLASGDV KVAEVVRDLWRR++ERGL
Sbjct 61 VVGQEGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRMLAKARQILV ELALAE+T++ KAET+LDEVLA+
Sbjct 121 SAGEKRMLAKARQILVSELALAENTNEDKAETLLDEVLAS 160
>gi|317507825|ref|ZP_07965526.1| CarD/TRCF domain-containing protein [Segniliparus rugosus ATCC
BAA-974]
gi|316253867|gb|EFV13236.1| CarD/TRCF domain-containing protein [Segniliparus rugosus ATCC
BAA-974]
Length=162
Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 138/162 (86%), Positives = 149/162 (92%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FK+GDTVVYPHHGAALVEAIE RTIKG +KEYLVLKV QGDLTVRVPAENAEY+G+RD
Sbjct 1 MNFKIGDTVVYPHHGAALVEAIEVRTIKGVEKEYLVLKVGQGDLTVRVPAENAEYIGIRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VV EGLDKVF VLR HTEEPTNWSRRYKAN+EKLASGDV+KVAEVVRDLWRR+Q RGL
Sbjct 61 VVSDEGLDKVFNVLRDVHTEEPTNWSRRYKANIEKLASGDVHKVAEVVRDLWRREQGRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKR+LAKARQ+LVGELALAES+DD KAE +LDEVLA AS
Sbjct 121 SAGEKRLLAKARQVLVGELALAESSDDEKAECLLDEVLAEAS 162
>gi|296392879|ref|YP_003657763.1| CarD family transcriptional regulator [Segniliparus rotundus
DSM 44985]
gi|296180026|gb|ADG96932.1| transcriptional regulator, CarD family [Segniliparus rotundus
DSM 44985]
Length=162
Score = 280 bits (716), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 138/162 (86%), Positives = 149/162 (92%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FK+GDTVVYPHHGAALVEAIE RTIKG +KEYLVLKV GDLTVRVPAENAEY+G+RD
Sbjct 1 MNFKIGDTVVYPHHGAALVEAIEVRTIKGVEKEYLVLKVGHGDLTVRVPAENAEYIGIRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VV EGLDKVF VLR HTEEPTNWSRRYKAN+EKLASGDV+KVAEVVRDLWRR+Q RGL
Sbjct 61 VVSDEGLDKVFNVLRDVHTEEPTNWSRRYKANIEKLASGDVHKVAEVVRDLWRREQGRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKR+LAKARQ+LVGELALAES+DDAKAE +LDEVLA AS
Sbjct 121 SAGEKRLLAKARQVLVGELALAESSDDAKAEGLLDEVLAQAS 162
>gi|337766488|emb|CCB75199.1| Transcriptional factor regulator [Streptomyces cattleya NRRL
8057]
Length=160
Score = 280 bits (716), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 138/160 (87%), Positives = 151/160 (95%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FKVGDTVVYPHHGAAL+EAIETR IKG K YLVLKVAQGDLTVRVPA+NAE+VGVRD
Sbjct 1 MTFKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLD+VF+VLRAP+TEEPTNWSRRYKANLEKLASGDV KVAEVVRDLWRR++ERGL
Sbjct 61 VVGQEGLDRVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRMLAKARQILV ELALAE+T++ KAE +LDEVLA+
Sbjct 121 SAGEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160
>gi|317126037|ref|YP_004100149.1| CarD family transcriptional regulator [Intrasporangium calvum
DSM 43043]
gi|315590125|gb|ADU49422.1| transcriptional regulator, CarD family [Intrasporangium calvum
DSM 43043]
Length=160
Score = 280 bits (715), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 137/160 (86%), Positives = 148/160 (93%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M+FKVG+TVVYPHHGAAL+E I TRTIKGE K YL LKVAQGDLT+ VPAEN + VGVRD
Sbjct 1 MVFKVGETVVYPHHGAALIEEINTRTIKGEDKLYLKLKVAQGDLTIEVPAENCDLVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLD+VF+VLRAPHTEEPTNWSRRYKANLEKLASGDV KVAEVVRDLWRRDQ+RGL
Sbjct 61 VVGQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDQDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRMLAKARQILV ELALAE TD+ KAE+ILDEVLA+
Sbjct 121 SAGEKRMLAKARQILVSELALAEKTDEDKAESILDEVLAS 160
>gi|302544415|ref|ZP_07296757.1| CarD family transcriptional regulator [Streptomyces hygroscopicus
ATCC 53653]
gi|345016050|ref|YP_004818404.1| CarD family transcriptional regulator [Streptomyces violaceusniger
Tu 4113]
gi|302462033|gb|EFL25126.1| CarD family transcriptional regulator [Streptomyces himastatinicus
ATCC 53653]
gi|344042399|gb|AEM88124.1| transcriptional regulator, CarD family [Streptomyces violaceusniger
Tu 4113]
Length=160
Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/160 (86%), Positives = 150/160 (94%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FKVGDTVVYPHHGAAL+EAIETR IKG K YLVLKVAQGDLTVRVPA+NAE+VGVRD
Sbjct 1 MTFKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQ+GLD+VF+VLRAP+ EEPTNWSRRYKANLEKLASGDV KVAEVVRDLWRR++ERGL
Sbjct 61 VVGQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRMLAKARQILV ELALAEST++ KAE +LDEVLA+
Sbjct 121 SAGEKRMLAKARQILVSELALAESTNEDKAEALLDEVLAS 160
>gi|320009411|gb|ADW04261.1| transcriptional regulator, CarD family [Streptomyces flavogriseus
ATCC 33331]
Length=160
Score = 278 bits (710), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/160 (86%), Positives = 150/160 (94%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FKVGDTVVYPHHGAAL+EAIETR IKG K YLVLKVAQGDLTVRVPA+NAE+VGVRD
Sbjct 1 MTFKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLD+VF+VLRAP+ EEPTNWSRRYKANLEKLASGDV KVAEVVRDLWRR++ERGL
Sbjct 61 VVGQEGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRMLAKARQILV ELALAE+T++ KAE +LDEVLA+
Sbjct 121 SAGEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160
>gi|284989246|ref|YP_003407800.1| CarD family transcriptional regulator [Geodermatophilus obscurus
DSM 43160]
gi|284062491|gb|ADB73429.1| transcriptional regulator, CarD family [Geodermatophilus obscurus
DSM 43160]
Length=160
Score = 278 bits (710), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/160 (85%), Positives = 151/160 (95%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M F VG+TVVYPHHGAAL+EAIETR IKGE++ YLVLKVAQGDLTVRVPA+NAE VGVRD
Sbjct 1 MGFTVGETVVYPHHGAALIEAIETRVIKGEERAYLVLKVAQGDLTVRVPADNAEIVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQ+GL++VF+VLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRD++RGL
Sbjct 61 VVGQDGLNRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRML+KARQILV ELALAE T++ KAE +LDEVLA+
Sbjct 121 SAGEKRMLSKARQILVSELALAEGTNEDKAEVLLDEVLAS 160
>gi|21222627|ref|NP_628406.1| transcriptional factor regulator [Streptomyces coelicolor A3(2)]
gi|29830513|ref|NP_825147.1| CarD-like transcriptional regulator [Streptomyces avermitilis
MA-4680]
gi|182437804|ref|YP_001825523.1| putative CarD-like transcriptional regulator [Streptomyces griseus
subsp. griseus NBRC 13350]
46 more sequence titles
Length=160
Score = 276 bits (707), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 136/160 (85%), Positives = 150/160 (94%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FKVGDTVVYPHHGAAL+EAIETR IKG K YLVLKVAQGDLTVRVPA+NAE+VGVRD
Sbjct 1 MTFKVGDTVVYPHHGAALIEAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQ+GLD+VF+VLRAP+ EEPTNWSRRYKANLEKLASGDV KVAEVVRDLWRR++ERGL
Sbjct 61 VVGQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRMLAKARQILV ELALAE+T++ KAE +LDEVLA+
Sbjct 121 SAGEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160
>gi|297563240|ref|YP_003682214.1| CarD family transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847688|gb|ADH69708.1| transcriptional regulator, CarD family [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length=160
Score = 276 bits (706), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 137/158 (87%), Positives = 146/158 (93%), Gaps = 0/158 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FKVGDTVVYPHHGAA +EAIETR IKGE + YLVL+V +GDLTVRVPA NAE VGVRD
Sbjct 1 MAFKVGDTVVYPHHGAARIEAIETRNIKGEDRIYLVLRVDKGDLTVRVPAANAEDVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLDKVF+VLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRD+ERGL
Sbjct 61 VVGQEGLDKVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVL 158
SAGEKRMLAKARQILV ELALAE T++ KAE +LDEVL
Sbjct 121 SAGEKRMLAKARQILVSELALAEKTNEDKAEALLDEVL 158
>gi|269124964|ref|YP_003298334.1| CarD family transcriptional regulator [Thermomonospora curvata
DSM 43183]
gi|268309922|gb|ACY96296.1| transcriptional regulator, CarD family [Thermomonospora curvata
DSM 43183]
Length=160
Score = 276 bits (705), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 137/160 (86%), Positives = 146/160 (92%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M F VGDTVVYPHHGAA +EAIETRTIKGE K YLVLKV +GDLTVRVP EN E VGVRD
Sbjct 1 MTFTVGDTVVYPHHGAARIEAIETRTIKGEDKTYLVLKVDKGDLTVRVPVENVEEVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGL+KVF+VLRAP+TEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRD+ERGL
Sbjct 61 VVGQEGLEKVFEVLRAPYTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRMLAKARQILV ELALAE T++ KAE +LDEVLA
Sbjct 121 SAGEKRMLAKARQILVSELALAEKTNEDKAEALLDEVLAG 160
>gi|333026128|ref|ZP_08454192.1| putative transcriptional factor regulator [Streptomyces sp. Tu6071]
gi|332745980|gb|EGJ76421.1| putative transcriptional factor regulator [Streptomyces sp. Tu6071]
Length=160
Score = 275 bits (704), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 135/160 (85%), Positives = 150/160 (94%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FKVGDTVVYPHHGAAL++AIETR IKG K YLVLKVAQGDLTVRVPA+NAE+VGVRD
Sbjct 1 MTFKVGDTVVYPHHGAALIDAIETRQIKGVDKTYLVLKVAQGDLTVRVPADNAEFVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQ+GLD+VF+VLRAP+ EEPTNWSRRYKANLEKLASGDV KVAEVVRDLWRR++ERGL
Sbjct 61 VVGQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRERERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRMLAKARQILV ELALAE+T++ KAE +LDEVLA+
Sbjct 121 SAGEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160
>gi|86742930|ref|YP_483330.1| CarD family transcriptional regulator [Frankia sp. CcI3]
gi|158312226|ref|YP_001504734.1| CarD family transcriptional regulator [Frankia sp. EAN1pec]
gi|288923580|ref|ZP_06417692.1| transcriptional regulator, CarD family [Frankia sp. EUN1f]
gi|336180086|ref|YP_004585461.1| CarD family transcriptional regulator [Frankia symbiont of Datisca
glomerata]
gi|86569792|gb|ABD13601.1| transcriptional regulator, CarD family [Frankia sp. CcI3]
gi|158107631|gb|ABW09828.1| transcriptional regulator, CarD family [Frankia sp. EAN1pec]
gi|288345079|gb|EFC79496.1| transcriptional regulator, CarD family [Frankia sp. EUN1f]
gi|334861066|gb|AEH11540.1| transcriptional regulator, CarD family [Frankia symbiont of Datisca
glomerata]
Length=160
Score = 274 bits (701), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/160 (84%), Positives = 149/160 (94%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M F+VG+TVVYPHHGAAL++AIETR IKGE+K YLVLKVAQGDLTVRVPA+N VGVRD
Sbjct 1 MAFQVGETVVYPHHGAALIDAIETRVIKGEEKLYLVLKVAQGDLTVRVPADNVGMVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQ+GL++VF+VLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRD+ERGL
Sbjct 61 VVGQDGLERVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRML+KARQILV ELALAE T++ KAE +LDEVLA
Sbjct 121 SAGEKRMLSKARQILVSELALAEGTNEDKAEAMLDEVLAG 160
>gi|312194274|ref|YP_004014335.1| CarD family transcriptional regulator [Frankia sp. EuI1c]
gi|311225610|gb|ADP78465.1| transcriptional regulator, CarD family [Frankia sp. EuI1c]
Length=160
Score = 274 bits (701), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/160 (84%), Positives = 149/160 (94%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M F+VG+TVVYPHHGAAL++AIETR IKGE+K YLVLKVAQGDLTVRVPA+N VGVRD
Sbjct 1 MAFQVGETVVYPHHGAALIDAIETRVIKGEEKLYLVLKVAQGDLTVRVPADNIGMVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQ+GL++VF+VLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRD+ERGL
Sbjct 61 VVGQDGLERVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRML+KARQILV ELALAE T++ KAE +LDEVLA
Sbjct 121 SAGEKRMLSKARQILVSELALAEGTNEDKAEAMLDEVLAG 160
>gi|291453071|ref|ZP_06592461.1| transcriptional factor regulator [Streptomyces albus J1074]
gi|291356020|gb|EFE82922.1| transcriptional factor regulator [Streptomyces albus J1074]
Length=160
Score = 274 bits (700), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 135/160 (85%), Positives = 149/160 (94%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FKVGDTVVYPHHGAAL+EAIETR IKG K YLVLKVAQGDLTVRVPA+NAE VGVRD
Sbjct 1 MTFKVGDTVVYPHHGAALIEAIETRQIKGVDKNYLVLKVAQGDLTVRVPADNAELVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQ+GLD+VF+VLRAP+ EEPTNWSRRYKANLEKLASGDV +VAEVVRDLWRR++ERGL
Sbjct 61 VVGQDGLDRVFEVLRAPYAEEPTNWSRRYKANLEKLASGDVIRVAEVVRDLWRRERERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRMLAKARQILV ELALAE+T++ KAE +LDEVLA+
Sbjct 121 SAGEKRMLAKARQILVSELALAENTNEDKAEALLDEVLAS 160
>gi|111225860|ref|YP_716654.1| putative CarD-like transcriptional regulator [Frankia alni ACN14a]
gi|111153392|emb|CAJ65148.1| putative CarD-like transcriptional regulator [Frankia alni ACN14a]
Length=160
Score = 273 bits (698), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 133/160 (84%), Positives = 149/160 (94%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M F+VG+TVVYPHHGAAL++AIETR IKGE++ YLVLKVAQGDLTVRVPA+N VGVRD
Sbjct 1 MAFQVGETVVYPHHGAALIDAIETRVIKGEERLYLVLKVAQGDLTVRVPADNVGMVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQ+GL++VF+VLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRD+ERGL
Sbjct 61 VVGQDGLERVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRML+KARQILV ELALAE T++ KAE +LDEVLA
Sbjct 121 SAGEKRMLSKARQILVSELALAEGTNEDKAEAMLDEVLAG 160
>gi|296268490|ref|YP_003651122.1| CarD family transcriptional regulator [Thermobispora bispora
DSM 43833]
gi|296091277|gb|ADG87229.1| transcriptional regulator, CarD family [Thermobispora bispora
DSM 43833]
Length=163
Score = 273 bits (698), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 134/161 (84%), Positives = 148/161 (92%), Gaps = 0/161 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FKVGDTVVYPHHGAA +EAI TRTI G++K YLVLKV +GDLTV+VPAENAE VGVRD
Sbjct 1 MTFKVGDTVVYPHHGAARIEAITTRTINGQEKTYLVLKVDKGDLTVQVPAENAELVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGL++VF VLR PHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDL+RRD+ERGL
Sbjct 61 VVGQEGLERVFDVLRMPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLYRRDKERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAA 161
SAGEKRMLAKARQILV ELALAE+T++ KAE +LDEVL +A
Sbjct 121 SAGEKRMLAKARQILVSELALAENTNEDKAEALLDEVLNSA 161
>gi|271962514|ref|YP_003336710.1| carD family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270505689|gb|ACZ83967.1| CarD family transcriptional regulator [Streptosporangium roseum
DSM 43021]
Length=160
Score = 273 bits (697), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 133/160 (84%), Positives = 147/160 (92%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M F+VGDTVVYPHHGAA +EAI TRTIKGE++ YLVLKV +GDLTV+VPA+NAE VGVRD
Sbjct 1 MTFQVGDTVVYPHHGAARIEAITTRTIKGEERTYLVLKVDKGDLTVQVPADNAELVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGL++VF VLR PHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRD+ERGL
Sbjct 61 VVGQEGLERVFDVLRMPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRMLAKARQILV ELALAE T++ KAE +LDEVL +
Sbjct 121 SAGEKRMLAKARQILVSELALAEKTNEDKAEALLDEVLNS 160
>gi|258651110|ref|YP_003200266.1| CarD family transcriptional regulator [Nakamurella multipartita
DSM 44233]
gi|258554335|gb|ACV77277.1| transcriptional regulator, CarD family [Nakamurella multipartita
DSM 44233]
Length=160
Score = 272 bits (696), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/160 (84%), Positives = 148/160 (93%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M+F VG+TVVYPHHGAAL++A ETRT+KG +K YLVLKVAQGDLTV+VPA+NAE VGVRD
Sbjct 1 MVFNVGETVVYPHHGAALIQATETRTVKGVEKLYLVLKVAQGDLTVKVPADNAEIVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VV + GLD VF+VLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRD+ERGL
Sbjct 61 VVDRTGLDHVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDRERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRMLAKARQILV ELALAE T++ +AE ILDEVLA+
Sbjct 121 SAGEKRMLAKARQILVSELALAEGTNEVRAEGILDEVLAS 160
>gi|319948870|ref|ZP_08022983.1| CarD family transcriptional regulator [Dietzia cinnamea P4]
gi|319437472|gb|EFV92479.1| CarD family transcriptional regulator [Dietzia cinnamea P4]
Length=164
Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/162 (81%), Positives = 147/162 (91%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FKVGDTVVYPHHGAA ++AIE RT++G +KEYLVLKV+QGDLTV+VPAENAEYVGVRD
Sbjct 1 MEFKVGDTVVYPHHGAATIQAIEMRTVRGTEKEYLVLKVSQGDLTVKVPAENAEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VV Q GLDKVF+VLR H EEPTNWSRRYKAN EKLASGDVNKVAEVVRDLWRRD +RGL
Sbjct 61 VVDQAGLDKVFEVLRTEHAEEPTNWSRRYKANGEKLASGDVNKVAEVVRDLWRRDLDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRMLAKARQ+LVGELALAE +D+ +A+ +LDEVL +A+
Sbjct 121 SAGEKRMLAKARQVLVGELALAERSDEERADALLDEVLGSAA 162
>gi|152964866|ref|YP_001360650.1| CarD family transcriptional regulator [Kineococcus radiotolerans
SRS30216]
gi|151359383|gb|ABS02386.1| transcriptional regulator, CarD family [Kineococcus radiotolerans
SRS30216]
Length=160
Score = 266 bits (680), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 130/160 (82%), Positives = 146/160 (92%), Gaps = 0/160 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M F VG+TVVYPHHGAAL+E I+TRTIKGE K YLVLKVAQGDLT+ VPA+N + VGVRD
Sbjct 1 MAFTVGETVVYPHHGAALIEEIKTRTIKGEDKLYLVLKVAQGDLTIEVPADNVDLVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVG+EGLD+VF VLR P+ EEPTNWSRRYKANLEKLASGDV KVAEVVRDLWRRDQ+RGL
Sbjct 61 VVGREGLDRVFSVLRTPYAEEPTNWSRRYKANLEKLASGDVVKVAEVVRDLWRRDQDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA 160
SAGEKRMLAKARQILV ELALAE+T++ KAE++LDEVLA+
Sbjct 121 SAGEKRMLAKARQILVSELALAENTNEDKAESLLDEVLAS 160
>gi|145596771|ref|YP_001161068.1| transcription factor CarD [Salinispora tropica CNB-440]
gi|159040183|ref|YP_001539436.1| CarD family transcriptional regulator [Salinispora arenicola
CNS-205]
gi|145306108|gb|ABP56690.1| transcriptional regulator, CarD family [Salinispora tropica CNB-440]
gi|157919018|gb|ABW00446.1| transcriptional regulator, CarD family [Salinispora arenicola
CNS-205]
Length=161
Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 131/161 (82%), Positives = 147/161 (92%), Gaps = 0/161 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M+F VG+TVVYPHHGAAL+EAIETR IKGE+K+YLVL+VAQGDLTVRVPAENAE VGVR+
Sbjct 1 MVFSVGETVVYPHHGAALIEAIETRVIKGEEKQYLVLRVAQGDLTVRVPAENAEIVGVRE 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVG+EGL KVF VLRAPHTEEPTNWSRRYKANLEKLASG+ KVAEVVRDLWRR++ERGL
Sbjct 61 VVGEEGLGKVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRERERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAA 161
SAGEKRMLAKAR ILVGE+ALAE + +AET+LD+VL A
Sbjct 121 SAGEKRMLAKARDILVGEVALAEKSTKDEAETLLDKVLTEA 161
>gi|238061419|ref|ZP_04606128.1| CarD family transcriptional regulator [Micromonospora sp. ATCC
39149]
gi|330470463|ref|YP_004408206.1| transcriptional regulator, card family protein [Verrucosispora
maris AB-18-032]
gi|237883230|gb|EEP72058.1| CarD family transcriptional regulator [Micromonospora sp. ATCC
39149]
gi|328813434|gb|AEB47606.1| transcriptional regulator, card family protein [Verrucosispora
maris AB-18-032]
Length=161
Score = 265 bits (677), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/161 (82%), Positives = 146/161 (91%), Gaps = 0/161 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M+F VG+TVVYPHHGAAL+EAIETR IKGE K+YLVL+VAQGDLTVRVPAENAE VGVR+
Sbjct 1 MVFSVGETVVYPHHGAALIEAIETRVIKGEPKQYLVLRVAQGDLTVRVPAENAEIVGVRE 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVG+EGL KVF VLRAPHTEEPTNWSRRYKANLEKLASG+ KVAEVVRDLWRR++ERGL
Sbjct 61 VVGEEGLGKVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRERERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAA 161
SAGEKRMLAKAR ILVGE+ALAE + +AET+LD+VL A
Sbjct 121 SAGEKRMLAKARDILVGEVALAEKSTKDEAETLLDKVLTEA 161
>gi|302870278|ref|YP_003838915.1| transcription factor CarD [Micromonospora aurantiaca ATCC 27029]
gi|315503446|ref|YP_004082333.1| CarD family transcriptional regulator [Micromonospora sp. L5]
gi|302573137|gb|ADL49339.1| transcription factor CarD [Micromonospora aurantiaca ATCC 27029]
gi|315410065|gb|ADU08182.1| transcriptional regulator, CarD family [Micromonospora sp. L5]
Length=161
Score = 265 bits (677), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/161 (82%), Positives = 146/161 (91%), Gaps = 0/161 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M+F VG+TVVYPHHGAAL+EAIETR IKGE +EYLVL+VAQGDLTVRVPAENAE VGVR+
Sbjct 1 MVFSVGETVVYPHHGAALIEAIETRVIKGEPREYLVLRVAQGDLTVRVPAENAEIVGVRE 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVG+EGL KVF VLRAPHTEEPTNWSRRYKANLEKLASG+ KVAEVVRDLWRR++ERGL
Sbjct 61 VVGEEGLGKVFDVLRAPHTEEPTNWSRRYKANLEKLASGNPLKVAEVVRDLWRRERERGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAA 161
SAGEKRMLAKAR ILVGE+ALAE + +AET+LD+VL A
Sbjct 121 SAGEKRMLAKARDILVGEVALAEKSTKDEAETLLDKVLTEA 161
>gi|262200966|ref|YP_003272174.1| transcription factor CarD [Gordonia bronchialis DSM 43247]
gi|262084313|gb|ACY20281.1| transcription factor CarD [Gordonia bronchialis DSM 43247]
Length=162
Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/162 (80%), Positives = 146/162 (91%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FKVGDTVVYPHHGAA VE I TRTIKGEQ EYLVLKVA GD+TV++P+ EYVGVRD
Sbjct 1 MNFKVGDTVVYPHHGAARVEDIVTRTIKGEQIEYLVLKVADGDMTVQIPSTKLEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLD+VFQVLRAPHTEEPTNW+RR+KAN EKL SGD+ KVAE+VRDLWRR+Q+RGL
Sbjct 61 VVGQEGLDQVFQVLRAPHTEEPTNWARRFKANQEKLISGDIIKVAEIVRDLWRREQDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRML +AR++LV EL+LA++TDD KA +ILDEVLAAAS
Sbjct 121 SAGEKRMLTRARRVLVDELSLAQNTDDEKATSILDEVLAAAS 162
>gi|343925920|ref|ZP_08765435.1| hypothetical protein GOALK_050_02160 [Gordonia alkanivorans NBRC
16433]
gi|343764271|dbj|GAA12361.1| hypothetical protein GOALK_050_02160 [Gordonia alkanivorans NBRC
16433]
Length=162
Score = 263 bits (673), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 128/162 (80%), Positives = 145/162 (90%), Gaps = 0/162 (0%)
Query 1 MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD 60
M FKVGDTVVYPHHGAA VE I TRTIKGEQ EYLVLKVA GD+TV++P+ EYVGVRD
Sbjct 1 MNFKVGDTVVYPHHGAARVEDIVTRTIKGEQIEYLVLKVADGDMTVQIPSTKLEYVGVRD 60
Query 61 VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL 120
VVGQEGLD+VFQVLRAPHTEEPTNW+RR+KAN EKL SGD+ KVAE+VRDLWRR+Q+RGL
Sbjct 61 VVGQEGLDQVFQVLRAPHTEEPTNWARRFKANQEKLISGDIIKVAEIVRDLWRREQDRGL 120
Query 121 SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS 162
SAGEKRML +AR++LV EL+LA++TDD KA ILDEVLAAAS
Sbjct 121 SAGEKRMLTRARRVLVDELSLAQNTDDEKATIILDEVLAAAS 162
Lambda K H
0.314 0.131 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130518307686
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40