BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3585 Length=480 Score E Sequences producing significant alignments: (Bits) Value gi|15610721|ref|NP_218102.1| DNA repair protein RadA [Mycobacter... 952 0.0 gi|308371391|ref|ZP_07424814.2| DNA repair protein radA [Mycobac... 907 0.0 gi|308232508|ref|ZP_07416276.2| DNA repair protein radA [Mycobac... 874 0.0 gi|339296404|gb|AEJ48515.1| DNA repair protein RadA [Mycobacteri... 850 0.0 gi|183985053|ref|YP_001853344.1| DNA repair protein RadA [Mycoba... 719 0.0 gi|41406571|ref|NP_959407.1| DNA repair protein RadA [Mycobacter... 716 0.0 gi|254822708|ref|ZP_05227709.1| DNA repair protein RadA [Mycobac... 696 0.0 gi|118465491|ref|YP_879848.1| DNA repair protein RadA [Mycobacte... 684 0.0 gi|342862423|ref|ZP_08719063.1| DNA repair protein RadA [Mycobac... 684 0.0 gi|296166640|ref|ZP_06849067.1| DNA repair protein RadA [Mycobac... 682 0.0 gi|120406290|ref|YP_956119.1| DNA repair protein RadA [Mycobacte... 654 0.0 gi|145222034|ref|YP_001132712.1| DNA repair protein RadA [Mycoba... 654 0.0 gi|240172171|ref|ZP_04750830.1| DNA repair protein RadA [Mycobac... 641 0.0 gi|118467526|ref|YP_890301.1| DNA repair protein RadA [Mycobacte... 626 2e-177 gi|126437692|ref|YP_001073383.1| DNA repair protein RadA [Mycoba... 612 6e-173 gi|108801705|ref|YP_641902.1| DNA repair protein RadA [Mycobacte... 610 2e-172 gi|169627667|ref|YP_001701316.1| DNA repair protein RadA [Mycoba... 585 6e-165 gi|333992518|ref|YP_004525132.1| DNA repair protein RadA [Mycoba... 516 4e-144 gi|262200964|ref|YP_003272172.1| DNA repair protein RadA [Gordon... 507 1e-141 gi|325675001|ref|ZP_08154688.1| DNA repair protein RadA [Rhodoco... 501 9e-140 gi|226304173|ref|YP_002764131.1| DNA repair protein RadA [Rhodoc... 499 3e-139 gi|256374521|ref|YP_003098181.1| DNA repair protein RadA [Actino... 499 6e-139 gi|343925918|ref|ZP_08765433.1| DNA repair protein RadA [Gordoni... 490 2e-136 gi|333918028|ref|YP_004491609.1| DNA repair protein radA [Amycol... 486 3e-135 gi|296138333|ref|YP_003645576.1| DNA repair protein RadA [Tsukam... 484 2e-134 gi|300790482|ref|YP_003770773.1| DNA repair protein RadA/Sms [Am... 484 2e-134 gi|302530713|ref|ZP_07283055.1| DNA repair protein RadA [Strepto... 481 1e-133 gi|54022396|ref|YP_116638.1| DNA repair protein RadA [Nocardia f... 479 5e-133 gi|326383081|ref|ZP_08204770.1| DNA repair protein RadA [Gordoni... 478 9e-133 gi|311896824|dbj|BAJ29232.1| putative DNA repair protein RadA [K... 476 3e-132 gi|226363785|ref|YP_002781567.1| DNA repair protein RadA [Rhodoc... 475 8e-132 gi|134097049|ref|YP_001102710.1| DNA repair protein RadA [Saccha... 469 5e-130 gi|227489402|ref|ZP_03919718.1| DNA repair protein RadA [Coryneb... 468 1e-129 gi|297159390|gb|ADI09102.1| DNA repair protein RadA [Streptomyce... 468 1e-129 gi|320118619|dbj|BAJ65335.1| DNA repair protein [Actinoplanes mi... 467 2e-129 gi|345008377|ref|YP_004810731.1| DNA repair protein RadA [Strept... 464 2e-128 gi|269794027|ref|YP_003313482.1| DNA repair protein RadA [Sangui... 461 1e-127 gi|227834040|ref|YP_002835747.1| DNA repair protein [Corynebacte... 461 1e-127 gi|337766602|emb|CCB75313.1| DNA repair protein; 6-O-methylguani... 461 1e-127 gi|290958385|ref|YP_003489567.1| DNA repair protein [Streptomyce... 461 1e-127 gi|291452148|ref|ZP_06591538.1| DNA repair protein [Streptomyces... 460 2e-127 gi|309810825|ref|ZP_07704626.1| DNA repair protein RadA [Dermaco... 460 3e-127 gi|294630670|ref|ZP_06709230.1| DNA repair protein RadA [Strepto... 459 6e-127 gi|257057463|ref|YP_003135295.1| DNA repair protein RadA [Saccha... 458 8e-127 gi|318062066|ref|ZP_07980787.1| DNA repair protein RadA [Strepto... 457 3e-126 gi|302535144|ref|ZP_07287486.1| DNA repair protein RadA [Strepto... 456 3e-126 gi|294813203|ref|ZP_06771846.1| DNA repair protein radA [Strepto... 456 4e-126 gi|254386484|ref|ZP_05001787.1| DNA repair protein RadA [Strepto... 456 5e-126 gi|318080457|ref|ZP_07987789.1| DNA repair protein RadA [Strepto... 456 5e-126 gi|291438053|ref|ZP_06577443.1| DNA repair protein RadA [Strepto... 454 1e-125 >gi|15610721|ref|NP_218102.1| DNA repair protein RadA [Mycobacterium tuberculosis H37Rv] gi|15843198|ref|NP_338235.1| DNA repair protein RadA [Mycobacterium tuberculosis CDC1551] gi|31794762|ref|NP_857255.1| DNA repair protein RadA [Mycobacterium bovis AF2122/97] 62 more sequence titles Length=480 Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/480 (99%), Positives = 480/480 (100%), Gaps = 0/480 (0%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPIS 60 +ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPIS Sbjct 1 MANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPIS 60 Query 61 AVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL 120 AVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL Sbjct 61 AVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL 120 Query 121 YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST 180 YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST Sbjct 121 YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST 180 Query 181 SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE 240 SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE Sbjct 181 SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE 240 Query 241 GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL 300 GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL Sbjct 241 GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL 300 Query 301 DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVG 360 DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVG Sbjct 301 DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVG 360 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF Sbjct 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 Query 421 TIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRGTTLATPPSHSGTGHVPLGRGT 480 TIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRGTTLATPPSHSGTGHVPLGRGT Sbjct 421 TIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRGTTLATPPSHSGTGHVPLGRGT 480 >gi|308371391|ref|ZP_07424814.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu003] gi|308374921|ref|ZP_07442093.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu007] gi|308376166|ref|ZP_07437881.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu008] gi|308328980|gb|EFP17831.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu003] gi|308348099|gb|EFP36950.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu007] gi|308352022|gb|EFP40873.1| DNA repair protein radA [Mycobacterium tuberculosis SUMu008] gi|323717779|gb|EGB26977.1| DNA repair protein radA [Mycobacterium tuberculosis CDC1551A] Length=460 Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/460 (99%), Positives = 460/460 (100%), Gaps = 0/460 (0%) Query 21 VGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISAVDAHRTRPCPTGIDELDRV 80 +GRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISAVDAHRTRPCPTGIDELDRV Sbjct 1 MGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISAVDAHRTRPCPTGIDELDRV 60 Query 81 LGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAGQIRLRADRIGC 140 LGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAGQIRLRADRIGC Sbjct 61 LGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAGQIRLRADRIGC 120 Query 141 GTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSEADGVTGGVTQVRAVTAAL 200 GTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSEADGVTGGVTQVRAVTAAL Sbjct 121 GTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSEADGVTGGVTQVRAVTAAL 180 Query 201 TAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRNGALRMVRGVKNRFGAA 260 TAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRNGALRMVRGVKNRFGAA Sbjct 181 TAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRNGALRMVRGVKNRFGAA 240 Query 261 DEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDGKRPLVGEVQALLATPCGG 320 DEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDGKRPLVGEVQALLATPCGG Sbjct 241 DEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDGKRPLVGEVQALLATPCGG 300 Query 321 SPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASA 380 SPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASA Sbjct 301 SPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASA 360 Query 381 YANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFTIALVPPSDDPVPPGMHALR 440 YANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFTIALVPPSDDPVPPGMHALR Sbjct 361 YANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFTIALVPPSDDPVPPGMHALR 420 Query 441 ASTIVAALQYMVDIADHRGTTLATPPSHSGTGHVPLGRGT 480 ASTIVAALQYMVDIADHRGTTLATPPSHSGTGHVPLGRGT Sbjct 421 ASTIVAALQYMVDIADHRGTTLATPPSHSGTGHVPLGRGT 460 >gi|308232508|ref|ZP_07416276.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu001] gi|308369167|ref|ZP_07416805.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu002] gi|308373953|ref|ZP_07434267.2| DNA repair protein radA [Mycobacterium tuberculosis SUMu006] 7 more sequence titles Length=445 Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/445 (99%), Positives = 445/445 (100%), Gaps = 0/445 (0%) Query 36 VAVLSAVGGTRRRSVAPASGAVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAG 95 +AVLSAVGGTRRRSVAPASGAVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAG Sbjct 1 MAVLSAVGGTRRRSVAPASGAVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAG 60 Query 96 DPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDV 155 DPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDV Sbjct 61 DPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDV 120 Query 156 HTVLDQIETVQPALVIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVG 215 HTVLDQIETVQPALVIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVG Sbjct 121 HTVLDQIETVQPALVIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVG 180 Query 216 HVTKDGAIAGPRSLEHLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDG 275 HVTKDGAIAGPRSLEHLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDG Sbjct 181 HVTKDGAIAGPRSLEHLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDG 240 Query 276 IVDPSNLFLDQRPTPVAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAA 335 IVDPSNLFLDQRPTPVAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAA Sbjct 241 IVDPSNLFLDQRPTPVAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAA 300 Query 336 MIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGE 395 MIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGE Sbjct 301 MIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGE 360 Query 396 VGLAGDIRRVNGMARRLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIA 455 VGLAGDIRRVNGMARRLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIA Sbjct 361 VGLAGDIRRVNGMARRLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIA 420 Query 456 DHRGTTLATPPSHSGTGHVPLGRGT 480 DHRGTTLATPPSHSGTGHVPLGRGT Sbjct 421 DHRGTTLATPPSHSGTGHVPLGRGT 445 >gi|339296404|gb|AEJ48515.1| DNA repair protein RadA [Mycobacterium tuberculosis CCDC5079] gi|339300005|gb|AEJ52115.1| DNA repair protein RadA [Mycobacterium tuberculosis CCDC5180] Length=431 Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/431 (99%), Positives = 431/431 (100%), Gaps = 0/431 (0%) Query 50 VAPASGAVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVA 109 +APASGAVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVA Sbjct 1 MAPASGAVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVA 60 Query 110 HRWAQSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPAL 169 HRWAQSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPAL Sbjct 61 HRWAQSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPAL 120 Query 170 VIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSL 229 VIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSL Sbjct 121 VIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSL 180 Query 230 EHLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPT 289 EHLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPT Sbjct 181 EHLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPT 240 Query 290 PVAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAI 349 PVAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAI Sbjct 241 PVAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAI 300 Query 350 AVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMA 409 AVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMA Sbjct 301 AVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMA 360 Query 410 RRLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRGTTLATPPSHS 469 RRLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRGTTLATPPSHS Sbjct 361 RRLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRGTTLATPPSHS 420 Query 470 GTGHVPLGRGT 480 GTGHVPLGRGT Sbjct 421 GTGHVPLGRGT 431 >gi|183985053|ref|YP_001853344.1| DNA repair protein RadA [Mycobacterium marinum M] gi|183178379|gb|ACC43489.1| DNA repair protein RadA [Mycobacterium marinum M] Length=491 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/477 (80%), Positives = 416/477 (88%), Gaps = 19/477 (3%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRS------VAPAS 54 +ANAR QYRC++CR+++AKWVGRC EC WGTV+EV+VLSAVGG R P S Sbjct 1 MANARLQYRCADCRYLTAKWVGRCPECSSWGTVEEVSVLSAVGGGSRLGRRAHGPAVPTS 60 Query 55 GAVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQ 114 AVPIS+V + +R PTGIDELDRVLGGG+VPGSVTLLAG+PGVGKSTLLLEVAHRWAQ Sbjct 61 QAVPISSVQPNLSRHRPTGIDELDRVLGGGVVPGSVTLLAGEPGVGKSTLLLEVAHRWAQ 120 Query 115 SGRRALYVSGEESAGQIRLRADRIGCG-------TEVE------EIYLAAQSDVHTVLDQ 161 SG+R LY+SGEESAGQIRLRADRIGCG +EV EIYLAA+SD+H VLD Sbjct 121 SGQRVLYISGEESAGQIRLRADRIGCGGPAAPDISEVSAIDNSAEIYLAAESDLHAVLDH 180 Query 162 IETVQPALVIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDG 221 I+TV ALVIVDSVQTMSTSE DGVTGGVTQVRAVTAALTAAAK+N ALILVGHVTKDG Sbjct 181 IDTVGSALVIVDSVQTMSTSEVDGVTGGVTQVRAVTAALTAAAKSNGFALILVGHVTKDG 240 Query 222 AIAGPRSLEHLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSN 281 AIAGPRSLEHLVDVVLHFEGDRNG LRMVRGVKNRFGAADEVGCFLLHDNGI+G+ DPSN Sbjct 241 AIAGPRSLEHLVDVVLHFEGDRNGGLRMVRGVKNRFGAADEVGCFLLHDNGIEGVADPSN 300 Query 282 LFLDQRPTPVAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVL 341 LFLDQRPTPV GTAITVTLDGKRPL+GEVQALLATP GG+PRRAVSGI ARAAMI+AVL Sbjct 301 LFLDQRPTPVPGTAITVTLDGKRPLIGEVQALLATPNGGAPRRAVSGIDHARAAMISAVL 360 Query 342 EKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGD 401 EKHARL++AVND+YLSTVGGMRLT+PS+DLAVAIALASAYANLPLPTTAVMIGEVGLAGD Sbjct 361 EKHARLSLAVNDMYLSTVGGMRLTDPSSDLAVAIALASAYANLPLPTTAVMIGEVGLAGD 420 Query 402 IRRVNGMARRLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHR 458 +RRVNGM RRL+EAARQGF IALVPP + VP G+ L A TIVAAL++M+DIADHR Sbjct 421 LRRVNGMDRRLAEAARQGFNIALVPPGCEAVPAGLRTLCAPTIVAALEHMIDIADHR 477 >gi|41406571|ref|NP_959407.1| DNA repair protein RadA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394920|gb|AAS02790.1| RadA [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458467|gb|EGO37440.1| DNA repair protein RadA [Mycobacterium avium subsp. paratuberculosis S397] Length=474 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/462 (82%), Positives = 413/462 (90%), Gaps = 7/462 (1%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPIS 60 +A ARSQYRCSECRHV+AKWVGRCLECG WGTVDEV LSAV G R R A AS AVPI+ Sbjct 1 MATARSQYRCSECRHVTAKWVGRCLECGTWGTVDEVPALSAVAGRRPRLTA-ASQAVPIT 59 Query 61 AVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL 120 ++ +R TG+DELDRVLGGG+VPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL Sbjct 60 SIKPDASRHRSTGVDELDRVLGGGVVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL 119 Query 121 YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST 180 Y+SGEESAGQIRLRADRIGCG + ++YLAA+SD+HTVL+ I TV+PALVIVDSVQTMST Sbjct 120 YISGEESAGQIRLRADRIGCGGD--QVYLAAESDLHTVLEHIATVKPALVIVDSVQTMST 177 Query 181 SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE 240 +EADGV GGVTQVRAVTAALTAAAKAN VALILVGHVTKDGAIAGPRSLEHLVDVVLHFE Sbjct 178 TEADGVAGGVTQVRAVTAALTAAAKANGVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE 237 Query 241 GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL 300 GDRNG+LRMVRG+KNRFGAADEVGCFLLHDNGI G+ DPSNLFLDQR PV GTAITVTL Sbjct 238 GDRNGSLRMVRGIKNRFGAADEVGCFLLHDNGIAGVTDPSNLFLDQRSAPVPGTAITVTL 297 Query 301 DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVG 360 DGKRPL+GEVQALLA+P GGSPRRAVSGI +RAAMI AVLEKH +L +AVNDIYLSTVG Sbjct 298 DGKRPLIGEVQALLASPSGGSPRRAVSGIDHSRAAMITAVLEKHGKLPVAVNDIYLSTVG 357 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 GMRLT+PS+DLAVAIALASA + LPLPTTAVMIGEVGLAGD+RRV+GMARRLSEAARQGF Sbjct 358 GMRLTDPSSDLAVAIALASALSELPLPTTAVMIGEVGLAGDLRRVSGMARRLSEAARQGF 417 Query 421 TIALVPPSDDP----VPPGMHALRASTIVAALQYMVDIADHR 458 +IAL+P DDP VP GM ALRA TI AAL++MVDIA+ R Sbjct 418 SIALIPDGDDPRREIVPSGMRALRAPTIGAALKHMVDIAEPR 459 >gi|254822708|ref|ZP_05227709.1| DNA repair protein RadA [Mycobacterium intracellulare ATCC 13950] Length=470 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/463 (81%), Positives = 415/463 (90%), Gaps = 7/463 (1%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPIS 60 +A ARSQYRCSECRHV+AKWVGRCLECG WGTVDEV VLS V G R A + AVPI+ Sbjct 1 MATARSQYRCSECRHVTAKWVGRCLECGTWGTVDEVPVLSTVAGRRAVRAAASQ-AVPIT 59 Query 61 AVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL 120 +++ ++ TG+ ELDRVLGGG+VPGSVTLLAGDPGVGKSTLLLEVAHRWA+SGRRAL Sbjct 60 SIEPGASQHRTTGVGELDRVLGGGVVPGSVTLLAGDPGVGKSTLLLEVAHRWAESGRRAL 119 Query 121 YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST 180 Y+SGEESAGQIRLRADRIGCG + E+YLAA+SD+HTVL+ I TV+PALVIVDSVQTMST Sbjct 120 YISGEESAGQIRLRADRIGCGGD--ELYLAAESDLHTVLEHIATVKPALVIVDSVQTMST 177 Query 181 SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE 240 +EADGV GGVTQVRAVT+ALTAAAKAN VALILVGHVTKDGAIAGPRSLEHLVDVVLHFE Sbjct 178 TEADGVAGGVTQVRAVTSALTAAAKANGVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE 237 Query 241 GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL 300 GDRNG+LRMVRG+KNRFGAADEVGCFLLHDNGI+G+ DPSNLFLDQRP PV GTAITVTL Sbjct 238 GDRNGSLRMVRGIKNRFGAADEVGCFLLHDNGIEGVADPSNLFLDQRPAPVPGTAITVTL 297 Query 301 DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVG 360 DGKRPL+GEVQALLA+P GGSPRRAVSGI +RAAMI AVLEKHA+L +A +DIYLSTVG Sbjct 298 DGKRPLIGEVQALLASPSGGSPRRAVSGIDHSRAAMITAVLEKHAKLPVAAHDIYLSTVG 357 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 GMRLT+PS+DLAVA+ALASA A+LPLPTTAVMIGEVGLAGD+RRV+GM RRLSEAARQGF Sbjct 358 GMRLTDPSSDLAVAVALASALADLPLPTTAVMIGEVGLAGDLRRVSGMERRLSEAARQGF 417 Query 421 TIALVPPSDDP----VPPGMHALRASTIVAALQYMVDIADHRG 459 T+AL+P DDP VP GM ALRA TIVAALQ+M+DIAD RG Sbjct 418 TVALIPDGDDPRRDIVPRGMRALRAPTIVAALQHMIDIADRRG 460 >gi|118465491|ref|YP_879848.1| DNA repair protein RadA [Mycobacterium avium 104] gi|254773526|ref|ZP_05215042.1| DNA repair protein RadA [Mycobacterium avium subsp. avium ATCC 25291] gi|118166778|gb|ABK67675.1| DNA repair protein RadA [Mycobacterium avium 104] Length=459 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/447 (82%), Positives = 399/447 (90%), Gaps = 7/447 (1%) Query 16 VSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISAVDAHRTRPCPTGID 75 ++AKWVGRCLECG WGTVDEV LSAV G R R A AS AVPI+++ +R TG+D Sbjct 1 MTAKWVGRCLECGTWGTVDEVPALSAVAGRRPRLTA-ASQAVPITSIKPDASRHRSTGVD 59 Query 76 ELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAGQIRLRA 135 ELDRVLGGG+VPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALY+SGEESAGQIRLRA Sbjct 60 ELDRVLGGGVVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYISGEESAGQIRLRA 119 Query 136 DRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSEADGVTGGVTQVRA 195 DRIGCG + ++YLAA+SD+HTVL+ + TV+PALVIVDSVQTMST+EADGV GGVTQVRA Sbjct 120 DRIGCGGD--QVYLAAESDLHTVLEHVATVKPALVIVDSVQTMSTTEADGVAGGVTQVRA 177 Query 196 VTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRNGALRMVRGVKN 255 VTAALTAAAKAN VALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRNG+LRMVRG+KN Sbjct 178 VTAALTAAAKANGVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRNGSLRMVRGIKN 237 Query 256 RFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDGKRPLVGEVQALLA 315 RFGAADEVGCFLLHDNGI G+ DPSNLFLDQR PV GTAITVTLDGKRPL+GEVQALLA Sbjct 238 RFGAADEVGCFLLHDNGIAGVTDPSNLFLDQRSAPVPGTAITVTLDGKRPLIGEVQALLA 297 Query 316 TPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAI 375 +P GGSPRRAVSGI +RAAMI AVLEKH +L +AVNDIYLSTVGGMRLT+PS+DLAVAI Sbjct 298 SPSGGSPRRAVSGIDHSRAAMITAVLEKHGKLPVAVNDIYLSTVGGMRLTDPSSDLAVAI 357 Query 376 ALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFTIALVPPSDDP---- 431 ALASA + LPLPTTAVMIGEVGLAGD+RRV+GMARRLSEAARQGF+IAL+P DDP Sbjct 358 ALASALSELPLPTTAVMIGEVGLAGDLRRVSGMARRLSEAARQGFSIALIPDGDDPRREI 417 Query 432 VPPGMHALRASTIVAALQYMVDIADHR 458 VP GM ALRA TI AALQ+MVDIA+ R Sbjct 418 VPSGMRALRAPTIGAALQHMVDIAEPR 444 >gi|342862423|ref|ZP_08719063.1| DNA repair protein RadA [Mycobacterium colombiense CECT 3035] gi|342130094|gb|EGT83428.1| DNA repair protein RadA [Mycobacterium colombiense CECT 3035] Length=447 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/445 (81%), Positives = 397/445 (90%), Gaps = 7/445 (1%) Query 25 LECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISAVDAHRTRPCPTGIDELDRVLGGG 84 +ECG WGTVDEV VLSAV G RR +A AS AVPI++++ + ++ TG+DELDRVLGGG Sbjct 1 MECGTWGTVDEVPVLSAVAG-RRNGLAAASPAVPITSIEPNASQHRTTGVDELDRVLGGG 59 Query 85 IVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAGQIRLRADRIGCGTEV 144 +VPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALY+SGEESAGQIRLRADRIGCG++ Sbjct 60 VVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYISGEESAGQIRLRADRIGCGSD- 118 Query 145 EEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAA 204 E+YLAA+SD+HTVL+ I TV+PALVIVDSVQTMST+EADGV GGVTQVRAVT+ALTAAA Sbjct 119 -ELYLAAESDLHTVLEHIATVRPALVIVDSVQTMSTTEADGVAGGVTQVRAVTSALTAAA 177 Query 205 KANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVG 264 K N VALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRNG+LRMVRG+KNRFGAADEVG Sbjct 178 KTNAVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRNGSLRMVRGIKNRFGAADEVG 237 Query 265 CFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDGKRPLVGEVQALLATPCGGSPRR 324 CFLLHDNGI+G+ DPSNLFLDQRP PV GTAITVTLDGKRPL+GEVQALLA P GGSPRR Sbjct 238 CFLLHDNGIEGVADPSNLFLDQRPAPVPGTAITVTLDGKRPLIGEVQALLAMPAGGSPRR 297 Query 325 AVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASAYANL 384 AVSGI +RAAMI AVLEKHA+L I NDIYLSTVGGMRLT+PS+DLAVA+ALASA L Sbjct 298 AVSGIDHSRAAMITAVLEKHAKLPIGANDIYLSTVGGMRLTDPSSDLAVAVALASALTGL 357 Query 385 PLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFTIALVPPSDDP----VPPGMHALR 440 PLPTTAVMIGEVGLAGD+RRV+GM RRLSEAARQGF+IAL+P DDP VP GM ALR Sbjct 358 PLPTTAVMIGEVGLAGDLRRVSGMERRLSEAARQGFSIALIPDGDDPRREIVPNGMRALR 417 Query 441 ASTIVAALQYMVDIADHRGTTLATP 465 A TIVAAL++M+DIADHRG A P Sbjct 418 APTIVAALEHMIDIADHRGGAPANP 442 >gi|296166640|ref|ZP_06849067.1| DNA repair protein RadA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898012|gb|EFG77591.1| DNA repair protein RadA [Mycobacterium parascrofulaceum ATCC BAA-614] Length=491 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/466 (80%), Positives = 411/466 (89%), Gaps = 8/466 (1%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVP-- 58 VAN RSQYRCSEC+HV+AKWVGRCLECG WGTVDEV VL+AVGG R + + + A P Sbjct 11 VANPRSQYRCSECQHVTAKWVGRCLECGTWGTVDEVPVLAAVGGRRAAAASASVSAAPAV 70 Query 59 -ISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGR 117 I++V+ + +R TGI ELDRVLGGG+VPGSVTLLAGDPGVGKSTLLL+VAHRWA SGR Sbjct 71 PITSVEPNASRHRSTGIGELDRVLGGGVVPGSVTLLAGDPGVGKSTLLLKVAHRWALSGR 130 Query 118 RALYVSGEESAGQIRLRADRIGCG-TEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQ 176 RALY+SGEESAGQIRLRADRIGCG + +E+YLAA+SD+HTVL I V+PALVIVDSVQ Sbjct 131 RALYISGEESAGQIRLRADRIGCGGKDAQEVYLAAESDLHTVLAHIAAVRPALVIVDSVQ 190 Query 177 TMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVV 236 TMST+E+DGV GGVTQVRAVTAALTAAAKAN +ALILVGHVTKDGAIAGPRSLEHLVDVV Sbjct 191 TMSTTESDGVAGGVTQVRAVTAALTAAAKANGIALILVGHVTKDGAIAGPRSLEHLVDVV 250 Query 237 LHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAI 296 LHFEGDRNG+LRMVRG+KNRFGAADEVGCFLLHD+GI+ + DPSNLFLDQRP PVAGTAI Sbjct 251 LHFEGDRNGSLRMVRGIKNRFGAADEVGCFLLHDSGIEDVSDPSNLFLDQRPAPVAGTAI 310 Query 297 TVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYL 356 TVTLDGKRPL+GEVQALLATP GGSPRRAVSGI +RAAMI AVLEKH RLAI VNDIYL Sbjct 311 TVTLDGKRPLIGEVQALLATPGGGSPRRAVSGIDHSRAAMIGAVLEKHGRLAIGVNDIYL 370 Query 357 STVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAA 416 STVGGMRLT+PS+DLAVA+ALASAY+ LPLPTTAVMIGEVGLAGD+RRV+GM RRL EAA Sbjct 371 STVGGMRLTDPSSDLAVAMALASAYSGLPLPTTAVMIGEVGLAGDLRRVSGMERRLGEAA 430 Query 417 RQGFTIALVPPSDDP----VPPGMHALRASTIVAALQYMVDIADHR 458 RQGF+IAL+P DDP VP GM ALRA TIV ALQ+M IA+ R Sbjct 431 RQGFSIALIPDGDDPRREIVPDGMRALRAPTIVTALQHMKAIAEPR 476 >gi|120406290|ref|YP_956119.1| DNA repair protein RadA [Mycobacterium vanbaalenii PYR-1] gi|119959108|gb|ABM16113.1| DNA repair protein RadA [Mycobacterium vanbaalenii PYR-1] Length=462 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/457 (73%), Positives = 382/457 (84%), Gaps = 4/457 (0%) Query 2 ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGT-RRRSVAPASGAVPIS 60 + RSQ+RCSEC HV+ KWVGRC +CG WGTV+EVA L+AVGG+ RR+VAPAS AVPIS Sbjct 6 SKTRSQFRCSECHHVTPKWVGRCPDCGTWGTVNEVA-LTAVGGSATRRAVAPASPAVPIS 64 Query 61 AVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL 120 ++D TR TGI ELDRVLGGG+VPGSVTLLAGDPGVGKSTLLLEVAHRWA +GRRAL Sbjct 65 SIDPGSTRHFHTGISELDRVLGGGLVPGSVTLLAGDPGVGKSTLLLEVAHRWASTGRRAL 124 Query 121 YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST 180 Y+SGEESAGQIRLRA+R GC + E+YLAA+SD+ T L I+ VQP LV+VDSVQTMST Sbjct 125 YLSGEESAGQIRLRAERTGCSHD--EVYLAAESDLQTALGHIDAVQPTLVVVDSVQTMST 182 Query 181 SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE 240 +EADGVTGGVTQVRAVT ALT AK VA++LVGHVTKDGAIAGPRSLEHLVDVVLHFE Sbjct 183 TEADGVTGGVTQVRAVTTALTMTAKTTGVAMLLVGHVTKDGAIAGPRSLEHLVDVVLHFE 242 Query 241 GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL 300 GDR ALRMVRG+KNRFGAADEVGCFLLHDNGI+ + DPS LFLDQRP PV+GTA+TVTL Sbjct 243 GDRASALRMVRGIKNRFGAADEVGCFLLHDNGIECVSDPSGLFLDQRPKPVSGTAVTVTL 302 Query 301 DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVG 360 DGKRP++GEVQAL+ +P GSPRRAVSGI +RAAMI AVLEK A+L + +NDIYLSTVG Sbjct 303 DGKRPMIGEVQALIGSPASGSPRRAVSGIDSSRAAMITAVLEKRAKLPVGMNDIYLSTVG 362 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 GMRLT+ S+DLAVA+++ASA+ +L LPTTA+ IGEVGLAGD+RRV GM RRL+EAAR GF Sbjct 363 GMRLTDSSSDLAVALSIASAFTDLALPTTAIAIGEVGLAGDLRRVTGMDRRLAEAARLGF 422 Query 421 TIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADH 457 T A+VP P G+ L A I +ALQ + I+ + Sbjct 423 TYAVVPSGVTSAPAGLQVLPADNITSALQVLRRISQN 459 >gi|145222034|ref|YP_001132712.1| DNA repair protein RadA [Mycobacterium gilvum PYR-GCK] gi|315446224|ref|YP_004079103.1| DNA repair protein RadA [Mycobacterium sp. Spyr1] gi|145214520|gb|ABP43924.1| DNA repair protein RadA [Mycobacterium gilvum PYR-GCK] gi|315264527|gb|ADU01269.1| DNA repair protein RadA [Mycobacterium sp. Spyr1] Length=467 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/456 (73%), Positives = 379/456 (84%), Gaps = 3/456 (0%) Query 2 ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISA 61 + RSQYRCSEC H +AKWVGRC +CG WGTVDEVA L+AVGG RR+VAPAS AVPIS+ Sbjct 6 SKVRSQYRCSECHHTTAKWVGRCSDCGTWGTVDEVA-LTAVGGATRRAVAPASPAVPISS 64 Query 62 VDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALY 121 +D TR TGI ELDRVLGGG+VPGSVTLLAGDPGVGKSTLLLEVAHRWA +GRRALY Sbjct 65 IDPGTTRHFHTGISELDRVLGGGLVPGSVTLLAGDPGVGKSTLLLEVAHRWASTGRRALY 124 Query 122 VSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTS 181 +SGEESAGQIRLRA+R GC + E+YLAA+SD+ T L I+ V+P+LV+VDSVQTMST+ Sbjct 125 LSGEESAGQIRLRAERTGCSHD--EVYLAAESDLQTALGHIDAVRPSLVVVDSVQTMSTT 182 Query 182 EADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEG 241 EADGVTGGVTQVRAVT ALT AK VA++LVGHVTKDGAIAGPRSLEHLVDVVLHFEG Sbjct 183 EADGVTGGVTQVRAVTTALTMTAKTTGVAMLLVGHVTKDGAIAGPRSLEHLVDVVLHFEG 242 Query 242 DRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLD 301 DR ALRMVRGVKNRFGAADEVGCFLLHDNGI+ + DPS LFLDQRP V+GTA+TVTLD Sbjct 243 DRASALRMVRGVKNRFGAADEVGCFLLHDNGIECVSDPSGLFLDQRPKAVSGTAVTVTLD 302 Query 302 GKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGG 361 GKRP++GEVQAL+ GSPRRAVSGI +RAAMI AVLEK ARL + NDIYLSTVGG Sbjct 303 GKRPMIGEVQALIGASASGSPRRAVSGIDSSRAAMITAVLEKRARLPVGTNDIYLSTVGG 362 Query 362 MRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFT 421 MRLT+ S+DLAVA+A+ASAY +L LPTTA+ IGEVGLAGD+RRV GM +RL+EAAR GFT Sbjct 363 MRLTDSSSDLAVALAIASAYTDLALPTTAIAIGEVGLAGDLRRVTGMDKRLAEAARLGFT 422 Query 422 IALVPPSDDPVPPGMHALRASTIVAALQYMVDIADH 457 +A+VP G+ L+A I +ALQ + I+ + Sbjct 423 VAVVPSGAVGAHAGLKVLQADNIGSALQVLRRISQN 458 >gi|240172171|ref|ZP_04750830.1| DNA repair protein RadA [Mycobacterium kansasii ATCC 12478] Length=420 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/409 (84%), Positives = 368/409 (90%), Gaps = 2/409 (0%) Query 52 PASGAVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHR 111 PAS AVPIS+V + +R PTGIDELDRVLGGG+VPGSVTLLAG+PGVGKSTLLLEVAHR Sbjct 2 PASHAVPISSVRPNLSRHRPTGIDELDRVLGGGVVPGSVTLLAGEPGVGKSTLLLEVAHR 61 Query 112 WAQSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVI 171 WAQSG+RALY+SGEESAGQIRLRADRIGC + E++YLAA+SDVH VLD IETVQ ALVI Sbjct 62 WAQSGQRALYISGEESAGQIRLRADRIGC--KGEQVYLAAESDVHAVLDHIETVQAALVI 119 Query 172 VDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEH 231 VDSVQTMSTSEADGV GGVTQVRAVTAALTAAAKA+ LILVGHVTK+G+IAGPRSLEH Sbjct 120 VDSVQTMSTSEADGVAGGVTQVRAVTAALTAAAKAHGFGLILVGHVTKEGSIAGPRSLEH 179 Query 232 LVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPV 291 LVDVVLHFEGDRNG LRMVRGVKNRFGAADEVGCFLLHD GI+GI DPSNLFLDQR PV Sbjct 180 LVDVVLHFEGDRNGGLRMVRGVKNRFGAADEVGCFLLHDKGIEGIADPSNLFLDQRSAPV 239 Query 292 AGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAV 351 GTAITVTLDGKRPL+GEVQALLATP GSPRRAVSGI ARAAMI AVLEKHARL IAV Sbjct 240 PGTAITVTLDGKRPLIGEVQALLATPVSGSPRRAVSGIDHARAAMITAVLEKHARLTIAV 299 Query 352 NDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARR 411 NDIYLSTVGGMRLT+PSADLAVAIALASAYANLPLPTTAVMIGEVGLAGD+R V+GM RR Sbjct 300 NDIYLSTVGGMRLTDPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDLRPVSGMDRR 359 Query 412 LSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRGT 460 L+EA R GF IAL+PP + VP G+ ALRA TI AAL++M+DIADHR + Sbjct 360 LAEAERLGFNIALIPPGREEVPAGLRALRAPTIAAALEHMIDIADHRSS 408 >gi|118467526|ref|YP_890301.1| DNA repair protein RadA [Mycobacterium smegmatis str. MC2 155] gi|118168813|gb|ABK69709.1| DNA repair protein RadA [Mycobacterium smegmatis str. MC2 155] Length=466 Score = 626 bits (1615), Expect = 2e-177, Method: Compositional matrix adjust. Identities = 324/458 (71%), Positives = 373/458 (82%), Gaps = 10/458 (2%) Query 5 RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVL---SAVGGTRRRSVAPASGAVPISA 61 RSQYRCSEC+HV+ KWVGRC CG WGTVDEVAVL + + G RRSVAP S AVPI++ Sbjct 7 RSQYRCSECQHVAPKWVGRCANCGTWGTVDEVAVLAGNNKLNGAARRSVAPTSPAVPITS 66 Query 62 VDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALY 121 +D TR PTG+ ELDRVLGGG+V GSVTLLAGDPGVGKSTLLLEVA+RWA SG+RALY Sbjct 67 IDPGVTRHYPTGVSELDRVLGGGLVAGSVTLLAGDPGVGKSTLLLEVANRWAHSGKRALY 126 Query 122 VSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTS 181 +SGEESAGQIRLRA+R GC + ++YLAA+SD+ L I+ V+P+LV+VDSVQTMST+ Sbjct 127 LSGEESAGQIRLRAERTGCTHD--QVYLAAESDLQIALGHIDEVKPSLVVVDSVQTMSTT 184 Query 182 EADGVTGGVTQVRAVTAALTAAAKAN----EVALILVGHVTKDGAIAGPRSLEHLVDVVL 237 EADGVTGGVTQVRAVT +LTA AKA VA+ILVGHVTKDGAIAGPRSLEHLVDVVL Sbjct 185 EADGVTGGVTQVRAVTTSLTAYAKAAVGDPAVAMILVGHVTKDGAIAGPRSLEHLVDVVL 244 Query 238 HFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAIT 297 HFEGDR +LRMVRGVKNRFGAADEVGCF LHDNGI+ + DPS LFLDQRP V GTA+T Sbjct 245 HFEGDRASSLRMVRGVKNRFGAADEVGCFQLHDNGIECVSDPSGLFLDQRPLAVPGTAVT 304 Query 298 VTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLS 357 VTLDGKRP++GEVQAL++ P G PRRAVSGI ARAAMI AVL+ R+ I ND+YLS Sbjct 305 VTLDGKRPMIGEVQALVSPPA-GPPRRAVSGIDSARAAMIGAVLQTRCRMPINSNDLYLS 363 Query 358 TVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAAR 417 TVGGMRLT+PSADLAVA+A+ASAY ++ +P A+ IGEVGLAGD+RRV GM RRLSEAAR Sbjct 364 TVGGMRLTDPSADLAVALAIASAYFDIAMPMKAIAIGEVGLAGDLRRVTGMDRRLSEAAR 423 Query 418 QGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIA 455 GFT A+VPP P G+ + A I AA+Q M +IA Sbjct 424 LGFTTAVVPPGVTSAPAGLKVVAADNIRAAVQTMREIA 461 >gi|126437692|ref|YP_001073383.1| DNA repair protein RadA [Mycobacterium sp. JLS] gi|126237492|gb|ABO00893.1| DNA repair protein RadA [Mycobacterium sp. JLS] Length=466 Score = 612 bits (1577), Expect = 6e-173, Method: Compositional matrix adjust. Identities = 338/467 (73%), Positives = 383/467 (83%), Gaps = 10/467 (2%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTR-RRSVAPASGAVPI 59 +A ARSQYRCSECRH++AKWVGRC +CG WGTV+EVAVL+AV G R +VAPAS AVPI Sbjct 1 MAKARSQYRCSECRHITAKWVGRCPDCGTWGTVEEVAVLAAVAGAPARHAVAPASPAVPI 60 Query 60 SAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRA 119 S++D RTR TGI ELDRVLGGG+VPGSVTLLAGDPGVGKSTLLLEVAHRWA SGRRA Sbjct 61 SSIDPGRTRHDETGISELDRVLGGGLVPGSVTLLAGDPGVGKSTLLLEVAHRWAVSGRRA 120 Query 120 LYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMS 179 LY++GEESAGQ+RLRA+R GC + E+YLAA+SD+ T L I+ VQP+LV+VDSVQTMS Sbjct 121 LYLTGEESAGQVRLRAERTGCTHD--ELYLAAESDLPTALGHIDAVQPSLVVVDSVQTMS 178 Query 180 TSEADGVTGGVTQVRAVTAALTAAAKANE-------VALILVGHVTKDGAIAGPRSLEHL 232 TSE DGVTGGVTQVRAVT ALT AK +A++LVGHVTKDGAIAGPRSLEHL Sbjct 179 TSENDGVTGGVTQVRAVTTALTQYAKGAAGPGGPGGIAMVLVGHVTKDGAIAGPRSLEHL 238 Query 233 VDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVA 292 VDVVLHFEGDRN LRMVRGVKNRFGAADEVGCF LHDNGI+ + DPS LF DQR TPVA Sbjct 239 VDVVLHFEGDRNSTLRMVRGVKNRFGAADEVGCFQLHDNGIECVADPSGLFRDQRDTPVA 298 Query 293 GTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVN 352 GTA+TVTLDGKRPL+GEVQAL+ P G PRRAVSGI ARAAMIAAVL+KHARL + Sbjct 299 GTAVTVTLDGKRPLIGEVQALVGPPTGPHPRRAVSGIDAARAAMIAAVLDKHARLQVGPC 358 Query 353 DIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRL 412 DIYLSTVGGMRLT+PS+DLAVAIA+ASA +P +V+IGE+GLAGD+RRV GM RRL Sbjct 359 DIYLSTVGGMRLTDPSSDLAVAIAMASARKERAMPANSVVIGELGLAGDLRRVTGMDRRL 418 Query 413 SEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRG 459 +EAAR GFT A+VPP VPPG+ L A I AAL+ + IAD+ G Sbjct 419 AEAARLGFTTAVVPPGTTGVPPGLRVLPAENISAALRVLDRIADNGG 465 >gi|108801705|ref|YP_641902.1| DNA repair protein RadA [Mycobacterium sp. MCS] gi|119870856|ref|YP_940808.1| DNA repair protein RadA [Mycobacterium sp. KMS] gi|108772124|gb|ABG10846.1| DNA repair protein RadA [Mycobacterium sp. MCS] gi|119696945|gb|ABL94018.1| DNA repair protein RadA [Mycobacterium sp. KMS] Length=466 Score = 610 bits (1572), Expect = 2e-172, Method: Compositional matrix adjust. Identities = 337/467 (73%), Positives = 382/467 (82%), Gaps = 10/467 (2%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTR-RRSVAPASGAVPI 59 +A ARSQYRCSECRH++AKWVGRC +CG WGTV+EVAVL+AV G R +VAPAS AVPI Sbjct 1 MAKARSQYRCSECRHITAKWVGRCPDCGTWGTVEEVAVLAAVAGAPARHAVAPASPAVPI 60 Query 60 SAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRA 119 S++D RTR TGI ELDRVLGGG+VPGSVTLLAGDPGVGKSTLLLEVAHRWA SGRRA Sbjct 61 SSIDPGRTRHDETGISELDRVLGGGLVPGSVTLLAGDPGVGKSTLLLEVAHRWAVSGRRA 120 Query 120 LYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMS 179 LY++GEESAGQ+RLRA+R GC + E+YLAA+SD+ T L I+ VQP+LV+VDSVQTMS Sbjct 121 LYLTGEESAGQVRLRAERTGCTHD--ELYLAAESDLPTALGHIDAVQPSLVVVDSVQTMS 178 Query 180 TSEADGVTGGVTQVRAVTAALTAAAKANE-------VALILVGHVTKDGAIAGPRSLEHL 232 TSE DGVTGGVTQVRAVT ALT AK +A++LVGHVTKDGAIAGPRSLEHL Sbjct 179 TSENDGVTGGVTQVRAVTTALTQYAKGAAGPGGPGGIAMVLVGHVTKDGAIAGPRSLEHL 238 Query 233 VDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVA 292 VDVVLHFEGDRN LRMVRGVKNRFGAADEVGCF LHDNGI+ + DPS LF DQR TPVA Sbjct 239 VDVVLHFEGDRNSTLRMVRGVKNRFGAADEVGCFQLHDNGIECVADPSGLFRDQRDTPVA 298 Query 293 GTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVN 352 GTA+TV LDGKRPL+GEVQAL+ P G PRRAVSGI ARAAMIAAVL+KHARL + Sbjct 299 GTAVTVALDGKRPLIGEVQALVGPPTGPHPRRAVSGIDAARAAMIAAVLDKHARLQVGPC 358 Query 353 DIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRL 412 DIYLSTVGGMRLT+PS+DLAVAIA+ASA +P +V+IGE+GLAGD+RRV GM RRL Sbjct 359 DIYLSTVGGMRLTDPSSDLAVAIAMASARKERAMPANSVVIGELGLAGDLRRVTGMDRRL 418 Query 413 SEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRG 459 +EAAR GFT A+VPP VPPG+ L A I AAL+ + IAD+ G Sbjct 419 AEAARLGFTTAVVPPGTTGVPPGLRVLPAENISAALRVLDRIADNGG 465 >gi|169627667|ref|YP_001701316.1| DNA repair protein RadA [Mycobacterium abscessus ATCC 19977] gi|169239634|emb|CAM60662.1| Probable DNA repair protein RadA [Mycobacterium abscessus] Length=473 Score = 585 bits (1508), Expect = 6e-165, Method: Compositional matrix adjust. Identities = 300/455 (66%), Positives = 369/455 (82%), Gaps = 4/455 (0%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGT-RRRSVAPASGAVPI 59 +A R+QYRCSEC+H +AKWVGRC +CG WG+V E AVLS++GG R+VAPAS AVPI Sbjct 1 MAKPRAQYRCSECQHTTAKWVGRCPDCGTWGSVSETAVLSSIGGLGAVRAVAPASAAVPI 60 Query 60 SAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRA 119 +++ TR PTG+ ELDRVLGGG++PGSV LLAG+PGVGKSTLLL+V H+WA SG RA Sbjct 61 TSIATDTTRHQPTGVSELDRVLGGGLIPGSVNLLAGEPGVGKSTLLLKVVHQWAASGGRA 120 Query 120 LYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMS 179 LY+SGEESA Q+RLRA+R GC + E+YLA++SD+H+VL IE V+P L I+DSVQTMS Sbjct 121 LYISGEESAAQVRLRAERTGCVHD--EVYLASESDLHSVLGHIEAVKPTLAIIDSVQTMS 178 Query 180 TSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHF 239 T++ADGVTGGVTQVRAVT ALT AAK++ VA++LVGHVTKDGAIAGPRSLEHLVDVVLHF Sbjct 179 TTDADGVTGGVTQVRAVTTALTMAAKSSGVAMVLVGHVTKDGAIAGPRSLEHLVDVVLHF 238 Query 240 EGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVT 299 EGD++ ALRMVRG+KNRFGAADEVGCF L D GI+ + DPS LFL+ R AGTA+TVT Sbjct 239 EGDKHSALRMVRGIKNRFGAADEVGCFQLRDKGIECVSDPSGLFLEHREKAAAGTAVTVT 298 Query 300 LDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTV 359 LDGKRPL+GEVQ+L+ T SPRRAVSG+ AR+AM+ AVLE+H RL + NDIY++TV Sbjct 299 LDGKRPLLGEVQSLVTTSTNPSPRRAVSGLDHARSAMVTAVLERHGRLPLGNNDIYMATV 358 Query 360 GGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQG 419 GGMR+T+PSADLA+ +A+ASAY ++ LP V IGEVGLAGDIRR + +R+SEAAR G Sbjct 359 GGMRMTDPSADLAILMAVASAYTDIALPANMVFIGEVGLAGDIRRTAAVGKRISEAARLG 418 Query 420 FTIALVPPS-DDPVPPGMHALRASTIVAALQYMVD 453 +T A++PP DD P GMH LR T+ AL+ + + Sbjct 419 YTHAVIPPEGDDLHPAGMHLLRCPTVGRALEVLSE 453 >gi|333992518|ref|YP_004525132.1| DNA repair protein RadA [Mycobacterium sp. JDM601] gi|333488486|gb|AEF37878.1| DNA repair protein RadA [Mycobacterium sp. JDM601] Length=396 Score = 516 bits (1328), Expect = 4e-144, Method: Compositional matrix adjust. Identities = 289/382 (76%), Positives = 325/382 (86%), Gaps = 2/382 (0%) Query 76 ELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAGQIRLRA 135 ELDRVLGGG+V GSV+LLAGDPGVGKSTLLLEV HRWA +GRRALYVSGEES GQIRLRA Sbjct 3 ELDRVLGGGVVSGSVSLLAGDPGVGKSTLLLEVVHRWALAGRRALYVSGEESGGQIRLRA 62 Query 136 DRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSEADGVTGGVTQVRA 195 +R GC + EIYLAA+SD+ TVL IE V+P LV+VDSVQT++ ++ DGV GGVTQVRA Sbjct 63 ERTGCSHD--EIYLAAESDLQTVLGHIEAVRPTLVVVDSVQTIAAADTDGVAGGVTQVRA 120 Query 196 VTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRNGALRMVRGVKN 255 VTAALTAAAKA +VALILVGHVTKDGAIAGPRSLEHLVDVVLHF+GDRN LRMVR VKN Sbjct 121 VTAALTAAAKAGDVALILVGHVTKDGAIAGPRSLEHLVDVVLHFDGDRNSVLRMVRAVKN 180 Query 256 RFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDGKRPLVGEVQALLA 315 RFGA DEVGCFLL D+GI+G+ DPS LFL+QR PV GTAITV LDGKRPL+GEVQALLA Sbjct 181 RFGATDEVGCFLLRDSGIEGVADPSGLFLEQRSEPVPGTAITVALDGKRPLIGEVQALLA 240 Query 316 TPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAI 375 P GGSPRRAVSGI ARAAMI AVL+KHA+L + DIYLSTVGGMRLT+PS DLAVAI Sbjct 241 NPAGGSPRRAVSGIDHARAAMITAVLDKHAKLPVGAADIYLSTVGGMRLTDPSTDLAVAI 300 Query 376 ALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFTIALVPPSDDPVPPG 435 ALASAYA+LPLP T V++GEVGLAGD+R ++GM RRL+EAAR GFT AL PP G Sbjct 301 ALASAYADLPLPATTVVVGEVGLAGDLRPISGMDRRLAEAARLGFTTALTPPGAPATVGG 360 Query 436 MHALRASTIVAALQYMVDIADH 457 +H + A+ IVAAL ++VDIADH Sbjct 361 LHTVSAANIVAALHHLVDIADH 382 >gi|262200964|ref|YP_003272172.1| DNA repair protein RadA [Gordonia bronchialis DSM 43247] gi|262084311|gb|ACY20279.1| DNA repair protein RadA [Gordonia bronchialis DSM 43247] Length=461 Score = 507 bits (1306), Expect = 1e-141, Method: Compositional matrix adjust. Identities = 261/442 (60%), Positives = 331/442 (75%), Gaps = 4/442 (0%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPIS 60 +A +S +RC+ C AKWVGRC +CG WG+VDEV L A G + +VAP+S A I+ Sbjct 1 MAKPKSTFRCTACGRQVAKWVGRCPDCGEWGSVDEVTTLFAAGTSATAAVAPSSPARRIT 60 Query 61 AVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL 120 +DA + PTGI E DRVLG G+VPGSV LLAG+PGVGKSTLLLE WA GR AL Sbjct 61 EIDAASSAAVPTGIGEFDRVLGRGVVPGSVILLAGEPGVGKSTLLLETVKHWAGLGRTAL 120 Query 121 YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST 180 Y++GEESAGQ+R+RA+R G E +YLAA+SD+ T+L Q++ V+P+L+IVDSVQT+ Sbjct 121 YITGEESAGQVRMRAERTGAVHE--NVYLAAESDLATILGQVDAVRPSLMIVDSVQTVVA 178 Query 181 SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE 240 + ADGVTGGVTQ+RAVT AL + AK +A+ILVGHVTKDGA+AGPRSLEHLVDVVL FE Sbjct 179 TGADGVTGGVTQIRAVTTALVSLAKNRGIAVILVGHVTKDGAVAGPRSLEHLVDVVLSFE 238 Query 241 GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL 300 GDR+ LRMVRG+KNRFG ADEVGCF D+GI + DPS +FL QR + V+GTA VT+ Sbjct 239 GDRHSTLRMVRGIKNRFGPADEVGCFEQRDDGIHQVTDPSGIFLHQRDSDVSGTATMVTM 298 Query 301 DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARL-AIAVNDIYLSTV 359 DGKRPLVGEVQ+L +PRRAVSG+ AR AM+ AVL+ L IA N+IY++TV Sbjct 299 DGKRPLVGEVQSLANGSQMATPRRAVSGMDSARVAMVLAVLQSRMGLEQIAKNEIYVATV 358 Query 360 GGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQG 419 GGMR+TEP+ADLA+A+A+ SA P+P T + IGEVGLAG++RRV+ ++RR++EA R G Sbjct 359 GGMRVTEPAADLAIALAVHSAMTKRPVPATTIAIGEVGLAGEVRRVSAVSRRIAEAQRLG 418 Query 420 FTIALVP-PSDDPVPPGMHALR 440 F A++P +D+ +P GM R Sbjct 419 FRHAIIPGGTDEKLPKGMRITR 440 >gi|325675001|ref|ZP_08154688.1| DNA repair protein RadA [Rhodococcus equi ATCC 33707] gi|325554587|gb|EGD24262.1| DNA repair protein RadA [Rhodococcus equi ATCC 33707] Length=462 Score = 501 bits (1291), Expect = 9e-140, Method: Compositional matrix adjust. Identities = 270/461 (59%), Positives = 348/461 (76%), Gaps = 12/461 (2%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGG--------TRRRSVAP 52 +A +S +RCS C+H AKWVGRC ECG WG++DE VL+AV ++ P Sbjct 1 MAKPKSSFRCSSCQHTVAKWVGRCPECGTWGSMDEAPVLAAVTSRPGASLARAGAAALLP 60 Query 53 ASGAVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRW 112 ++ A PI+ +D TR TG+DELDRVLGGG+VPGSV LLAG+PGVGKSTLLLEV HRW Sbjct 61 STPATPITQIDGKTTRAKATGVDELDRVLGGGVVPGSVVLLAGEPGVGKSTLLLEVVHRW 120 Query 113 AQ--SGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALV 170 A + RALYV+GEESAGQ+RLRADR G E +YLAA+SD+ TVL +E V+P L+ Sbjct 121 ASRSADDRALYVTGEESAGQVRLRADRTGAVHE--RVYLAAESDLATVLGHVEQVRPTLL 178 Query 171 IVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLE 230 IVDSVQTM ++ DGV GGVTQVRA+T+ALT+ AKA+ V ++L+GHVTKDGA+AGPRSLE Sbjct 179 IVDSVQTMLAADVDGVVGGVTQVRAITSALTSLAKASGVPVLLIGHVTKDGAVAGPRSLE 238 Query 231 HLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTP 290 HLVDVVLHFEGD++ LRM+RG+KNRFGAADEVGCF L ++GI G+ DPS LFL R Sbjct 239 HLVDVVLHFEGDKHSTLRMIRGIKNRFGAADEVGCFELREDGIVGVSDPSGLFLHHRLDE 298 Query 291 VAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIA 350 V GTA+TVT+DGKRPL+GEVQAL+A SPRRAVSG+ AR +M+ AVLE+ + ++ Sbjct 299 VPGTAVTVTMDGKRPLLGEVQALVAPTHNPSPRRAVSGLDSARVSMVLAVLERRHSIKLS 358 Query 351 VNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMAR 410 ++Y +TVGGMR+T+PS DLA+AIA+AS + P+P V++GEVGLAG++RRV+G+ R Sbjct 359 DKEVYAATVGGMRMTDPSCDLALAIAVASGSKDRPIPAGTVVLGEVGLAGEVRRVSGVGR 418 Query 411 RLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYM 451 R++EAAR GFT A+VP +P G+ A+ + + AL+ + Sbjct 419 RVAEAARLGFTRAVVPVDSGELPKGIRAIEVANVGDALRAL 459 >gi|226304173|ref|YP_002764131.1| DNA repair protein RadA [Rhodococcus erythropolis PR4] gi|229494422|ref|ZP_04388185.1| DNA repair protein RadA [Rhodococcus erythropolis SK121] gi|226183288|dbj|BAH31392.1| putative DNA repair protein RadA [Rhodococcus erythropolis PR4] gi|229318784|gb|EEN84642.1| DNA repair protein RadA [Rhodococcus erythropolis SK121] Length=477 Score = 499 bits (1286), Expect = 3e-139, Method: Compositional matrix adjust. Identities = 275/460 (60%), Positives = 342/460 (75%), Gaps = 12/460 (2%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVA--------P 52 +A +S YRCSEC+ V KWVGRC +C WG++ EVAV++ V S+A P Sbjct 1 MAKVKSNYRCSECQSVVPKWVGRCPDCDSWGSMTEVAVVAPVASRAGASLAKAGSSAVLP 60 Query 53 ASGAVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRW 112 + A P++ +D+ T+ PTGI ELDRVLGGG+VPGSV LLAG+PGVGKSTLLLEV +RW Sbjct 61 TTPATPLTQIDSTSTQAKPTGIGELDRVLGGGVVPGSVVLLAGEPGVGKSTLLLEVVYRW 120 Query 113 AQ--SGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALV 170 A + RALYV+GEESAGQ+RLRADR + E +YLAA+SD+ T+L IE V+P LV Sbjct 121 AMRSADDRALYVTGEESAGQVRLRADR--TNSVHERMYLAAESDLATILGHIEQVKPTLV 178 Query 171 IVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLE 230 IVDSVQTM ++ DGV GGVTQV+AVT+ALT+ AKA+ + ++L+GHVTKDGA+AGPRSLE Sbjct 179 IVDSVQTMLAADVDGVVGGVTQVKAVTSALTSLAKASGIPVLLIGHVTKDGAVAGPRSLE 238 Query 231 HLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTP 290 HLVDVVLHFEGD++ LRMVRGVKNRFGAADEVGCF L + GI+ I DPS LFL R Sbjct 239 HLVDVVLHFEGDKHSTLRMVRGVKNRFGAADEVGCFELSEQGINEISDPSGLFLHHREEA 298 Query 291 VAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIA 350 V GTA+TV +DGKRPL+GEVQAL+A +PRRAVSG+ AR AM+ AVLE+ ++I+ Sbjct 299 VEGTAVTVMMDGKRPLLGEVQALVAATPLPTPRRAVSGLDTARVAMVLAVLERRVGVSIS 358 Query 351 VNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMAR 410 D+Y +TVGGMR+TEP ADLA+AIA+ASA P+P V++GEVGLAG++RRV G+ R Sbjct 359 KADVYAATVGGMRMTEPGADLALAIAVASAVKAKPVPKGLVILGEVGLAGEVRRVAGVNR 418 Query 411 RLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQY 450 RL EAAR GFT A+VP P PGM + + AL Y Sbjct 419 RLIEAARLGFTSAIVPVDSGPNIPGMRVNEVANLAEALAY 458 >gi|256374521|ref|YP_003098181.1| DNA repair protein RadA [Actinosynnema mirum DSM 43827] gi|255918824|gb|ACU34335.1| DNA repair protein RadA [Actinosynnema mirum DSM 43827] Length=462 Score = 499 bits (1284), Expect = 6e-139, Method: Compositional matrix adjust. Identities = 270/461 (59%), Positives = 344/461 (75%), Gaps = 6/461 (1%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPIS 60 V AR YRC+EC H +KWVGRC EC WGTV+E V + R + A + A PI Sbjct 5 VRAARPVYRCAECGHEVSKWVGRCPECQAWGTVEERGVAAP---ARFLAGATSGDARPIG 61 Query 61 AVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL 120 VD +R TG+ ELDRVLGGG+VPG+V LLAG+PGVGKSTLLLEVAH+WA + R L Sbjct 62 QVDIESSRASATGVGELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLEVAHQWASTVGRCL 121 Query 121 YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST 180 YV+GEESAGQ+RLRADR G +EIYLAA+SD+ VL Q++ V+P+++IVDSVQTMS+ Sbjct 122 YVTGEESAGQVRLRADR--TGNLHDEIYLAAESDISAVLGQVDAVKPSMMIVDSVQTMSS 179 Query 181 SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE 240 DG+ GGV+QVRAVT+ L + AK + +ILVGHVTKDG++AGPR LEHLVDVVL FE Sbjct 180 LSIDGMPGGVSQVRAVTSGLISVAKERNLPIILVGHVTKDGSVAGPRVLEHLVDVVLQFE 239 Query 241 GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL 300 GDR+ LR++RG+KNRFGAADEVGCF L D+GI G+ DPS LFL++R V G+A+TV + Sbjct 240 GDRHSTLRLLRGIKNRFGAADEVGCFELRDDGIVGVPDPSGLFLNRREQDVTGSAVTVVV 299 Query 301 DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVG 360 +GKRPL+GEVQAL+A +PRRAVSG+ AR AM+ AVLEK R+ + D++ +TVG Sbjct 300 EGKRPLLGEVQALVAPTSLPAPRRAVSGLDSARVAMVMAVLEKRGRVPLGNKDVFAATVG 359 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 GMRL EPS DLA+A+A+ASA + PLP V++GEVGL+G++RRVNG+ RRLSEAAR G+ Sbjct 360 GMRLVEPSVDLALALAVASAAVDQPLPHDLVVVGEVGLSGELRRVNGVGRRLSEAARLGY 419 Query 421 TIALVPPSDDPVPPGMHALRASTIVAALQYMVDIADHRGTT 461 T ALVPP P+P AL A+ + AL+ ++ I RG++ Sbjct 420 TRALVPPDAGPLPKETRALVANDLGEALR-LLKITGKRGSS 459 >gi|343925918|ref|ZP_08765433.1| DNA repair protein RadA [Gordonia alkanivorans NBRC 16433] gi|343764269|dbj|GAA12359.1| DNA repair protein RadA [Gordonia alkanivorans NBRC 16433] Length=459 Score = 490 bits (1262), Expect = 2e-136, Method: Compositional matrix adjust. Identities = 257/446 (58%), Positives = 329/446 (74%), Gaps = 5/446 (1%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPIS 60 +A +S YRC+ C H AKWVGRC EC WG++DEVA T +VAP+S A+ I+ Sbjct 1 MAKPKSSYRCTGCGHQVAKWVGRCPECSEWGSIDEVAGAPTSSRTTA-AVAPSSPALRIT 59 Query 61 AVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL 120 VDA T PTGI ELDRVLG G+VPGSV LLAG+PGVGKSTLLLE WA R AL Sbjct 60 EVDAQSTAAVPTGIGELDRVLGRGVVPGSVILLAGEPGVGKSTLLLETVKHWAAQDRVAL 119 Query 121 YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST 180 Y++GEESAGQ+R+RA+R G +YLAA++D+ T+L ++TV+P+L+I+DSVQT+ Sbjct 120 YITGEESAGQVRMRAERTGAVHA--NVYLAAETDLATILGHVDTVRPSLMIIDSVQTVVA 177 Query 181 SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE 240 S ADGVTGGVTQ+RAVT AL + AK +A+ILVGHVTK+GA+AGPRSLEHLVDVVL FE Sbjct 178 SGADGVTGGVTQIRAVTTALVSLAKNRGIAVILVGHVTKEGAVAGPRSLEHLVDVVLAFE 237 Query 241 GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL 300 GD++ LRMVRGVKNRFGAADEVGCF D+GI + DPS +FL QR + V+G+ VT+ Sbjct 238 GDKHSTLRMVRGVKNRFGAADEVGCFEQRDDGIHQVPDPSGIFLHQRDSDVSGSVTMVTM 297 Query 301 DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHA-RLAIAVNDIYLSTV 359 DGKR LVGEVQAL +PRRAVSG+ R AM+ AVL+ A R + +++YLSTV Sbjct 298 DGKRALVGEVQALANGTEMSNPRRAVSGLDFNRVAMVLAVLQARAGRKELGKSEVYLSTV 357 Query 360 GGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQG 419 GGMR+TEP+ADLA+A+++ S P+P + V+IGEVGL G+IRRV+ +ARRL+EA R G Sbjct 358 GGMRVTEPAADLAIALSVYSTLTQRPVPQSTVVIGEVGLGGEIRRVSAVARRLAEAKRLG 417 Query 420 FTIALVP-PSDDPVPPGMHALRASTI 444 F A++P +D+ +P G+ LR + + Sbjct 418 FREAIIPAATDEELPKGIRILRVANL 443 >gi|333918028|ref|YP_004491609.1| DNA repair protein radA [Amycolicicoccus subflavus DQS3-9A1] gi|333480249|gb|AEF38809.1| DNA repair protein radA [Amycolicicoccus subflavus DQS3-9A1] Length=484 Score = 486 bits (1252), Expect = 3e-135, Method: Compositional matrix adjust. Identities = 259/461 (57%), Positives = 332/461 (73%), Gaps = 17/461 (3%) Query 5 RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVA------------- 51 ++ +RCS C+HV KW GRC ECG WG+++E LS++ + + A Sbjct 5 KTNFRCSACQHVLVKWAGRCPECGAWGSIEEAPALSSLQRSALQRSALPEARVASSTGGL 64 Query 52 -PASGAVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAH 110 P++ AV I V+ + PTGI ELDRVLGGG+VPG+V LLAG+PGVGKSTLLLEV Sbjct 65 LPSTPAVRIVDVEGTEAKAQPTGISELDRVLGGGVVPGAVILLAGEPGVGKSTLLLEVVR 124 Query 111 RWAQSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALV 170 +WA ALYV+GEESAGQ+RLRA+R E + +AA+SD+ T+L +E V+P L+ Sbjct 125 QWAARDV-ALYVTGEESAGQVRLRAERTDALHE--RVMIAAESDLATILGHVEQVRPGLL 181 Query 171 IVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLE 230 IVDSVQTM ++ +G+TGGVTQVRAVT+ALT AK + +A++L+GHVTKDG+IAGPR+LE Sbjct 182 IVDSVQTMRAADVEGITGGVTQVRAVTSALTHLAKTSGIAVLLIGHVTKDGSIAGPRALE 241 Query 231 HLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTP 290 HLVDVVLHFEGD+N LRMVRGVKNRFGA DEVGCF L +NGI + DPS LFL Sbjct 242 HLVDVVLHFEGDKNSTLRMVRGVKNRFGATDEVGCFELRENGIAEVSDPSGLFLHHHNDT 301 Query 291 VAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIA 350 V GT+ITV +DGKRPL+GEVQAL+A SPRRAVSG+ AR AMI AVLE+ L++A Sbjct 302 VPGTSITVAMDGKRPLLGEVQALVAGNGIPSPRRAVSGLDSARVAMILAVLERRCALSLA 361 Query 351 VNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMAR 410 +++Y +TVGGMR+TEP+ADLA+A+A+AS + LP V++GEVGLAG+IR V G+AR Sbjct 362 GSEVYAATVGGMRVTEPAADLAIALAVASGSRDRVLPPRTVVLGEVGLAGEIRPVPGVAR 421 Query 411 RLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAALQYM 451 R+ EAAR GFT A+VP +P G+ ST+ AL + Sbjct 422 RIQEAARLGFTNAIVPAGSGTLPVGVAVAEVSTVSEALTLL 462 >gi|296138333|ref|YP_003645576.1| DNA repair protein RadA [Tsukamurella paurometabola DSM 20162] gi|296026467|gb|ADG77237.1| DNA repair protein RadA [Tsukamurella paurometabola DSM 20162] Length=461 Score = 484 bits (1245), Expect = 2e-134, Method: Compositional matrix adjust. Identities = 262/436 (61%), Positives = 330/436 (76%), Gaps = 8/436 (1%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRS----VAPASGA 56 +A + QY CSEC H AKWVGRC CG W T++E A GG+ + P++ A Sbjct 1 MAKPKVQYTCSECGHTVAKWVGRCPSCGAWSTMEEGAPARVGGGSGPTAHVGLTLPSTPA 60 Query 57 VPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSG 116 VPI+ +D + TR P GI ELDRVLGGGIVPGSV LLAG+PGVGKSTLLL+V HRWA +G Sbjct 61 VPITRIDPNSTRALPVGIGELDRVLGGGIVPGSVILLAGEPGVGKSTLLLDVVHRWASTG 120 Query 117 R-RALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSV 175 R ++LYV+GEESAGQ+RLRA+R G ++ E+YLAA+SD+ TVL +E + P L++VDSV Sbjct 121 RGKSLYVTGEESAGQVRLRAERTGALSD--ELYLAAESDLGTVLGHVEQISPTLMVVDSV 178 Query 176 QTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDV 235 QT+S S DGV GGVTQVRA+TA LT+ AKA+ +A+ILVGHVTKDGA+AGPRSLEHLVDV Sbjct 179 QTLSASGVDGVHGGVTQVRAITATLTSLAKASGIAVILVGHVTKDGAVAGPRSLEHLVDV 238 Query 236 VLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTA 295 VL FEGD++ LRMVRG+KNRFGA+DEVGCF ++GI + DPS LFL R AGTA Sbjct 239 VLSFEGDKHSTLRMVRGIKNRFGASDEVGCFEQRESGIAQVTDPSGLFLHHRDQAAAGTA 298 Query 296 ITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLA-IAVNDI 354 +TV LDGKRP++GE+QAL+ PRRAVSG+ AR AMI AVL KH + +A D+ Sbjct 299 VTVGLDGKRPMLGELQALVTPTPLPQPRRAVSGLDSARVAMILAVLTKHGGIENLAQKDV 358 Query 355 YLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSE 414 Y +TVGGM++TEP+ADLA+A+A+AS A+ L V++GEVGLAG++RRV G+ RRL+E Sbjct 359 YAATVGGMKITEPAADLALALAIASGAADTALRPNTVVLGEVGLAGEVRRVTGVERRLAE 418 Query 415 AARQGFTIALVPPSDD 430 A R GFT A+VPP+ + Sbjct 419 AHRMGFTHAIVPPAQE 434 >gi|300790482|ref|YP_003770773.1| DNA repair protein RadA/Sms [Amycolatopsis mediterranei U32] gi|299799996|gb|ADJ50371.1| DNA repair protein RadA/Sms [Amycolatopsis mediterranei U32] gi|340532167|gb|AEK47372.1| DNA repair protein RadA [Amycolatopsis mediterranei S699] Length=452 Score = 484 bits (1245), Expect = 2e-134, Method: Compositional matrix adjust. Identities = 245/444 (56%), Positives = 320/444 (73%), Gaps = 2/444 (0%) Query 6 SQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISAVDAH 65 + YRC C + +AKW+GRC EC WG+ +E R + AP++ A PI VD Sbjct 5 TTYRCGSCGYEAAKWLGRCPECQEWGSFEERGAPVKPAIQRVAAGAPSAPARPIGEVDVE 64 Query 66 RTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGE 125 R TG+ ELDRVLGGG+VPG+V LLAG+PGVGKSTLLLEVA++WA++ R+LYV+GE Sbjct 65 AARARRTGVPELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLEVAYQWAKTVDRSLYVTGE 124 Query 126 ESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSEADG 185 ESAGQ+RLRA+R G + +YLAA+SD+ +L ++ V+P ++IVDS+QTM++ + DG Sbjct 125 ESAGQVRLRAER--TGNVHDRMYLAAESDLSAILGHVDDVKPGVLIVDSIQTMASPQVDG 182 Query 186 VTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRNG 245 GGVTQVRAVT+ L A AK + ++LVGHVTKDG++AGPR LEHLVDVVL FEGD++ Sbjct 183 SPGGVTQVRAVTSGLVALAKERGLPVVLVGHVTKDGSVAGPRVLEHLVDVVLQFEGDKHS 242 Query 246 ALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDGKRP 305 LRMVRG+KNRFGAADE+GCF L + GI G+ DPS LF+ PV+GTAITV+L+GKRP Sbjct 243 TLRMVRGIKNRFGAADEIGCFELQEEGIVGVPDPSGLFMSHTAEPVSGTAITVSLEGKRP 302 Query 306 LVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLT 365 ++GEVQAL++ PRRAVSG+ AR AM+ AVLEK L + D+Y +TVGGM++T Sbjct 303 MLGEVQALVSATAAPQPRRAVSGLDSARVAMVLAVLEKRGGLKLGDKDVYAATVGGMKIT 362 Query 366 EPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFTIALV 425 EP DLA+ +AL S++ ++ L V +GEVGLAG+IRRV + RRL+EAAR GFT ALV Sbjct 363 EPGIDLALVLALTSSFEDVALSPRLVSVGEVGLAGEIRRVPSVGRRLAEAARLGFTHALV 422 Query 426 PPSDDPVPPGMHALRASTIVAALQ 449 PP P G+ L + + AL Sbjct 423 PPDSGKPPAGIRVLEVANVADALN 446 >gi|302530713|ref|ZP_07283055.1| DNA repair protein RadA [Streptomyces sp. AA4] gi|302439608|gb|EFL11424.1| DNA repair protein RadA [Streptomyces sp. AA4] Length=453 Score = 481 bits (1238), Expect = 1e-133, Method: Compositional matrix adjust. Identities = 249/450 (56%), Positives = 329/450 (74%), Gaps = 5/450 (1%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSV-APASGAVPI 59 V + +RC+EC + +AKWVGRC EC WGT++E SA R + AP++ A PI Sbjct 2 VKKTSTVHRCAECGYETAKWVGRCPECQAWGTLEERG--SAKPAIARVAAGAPSAPARPI 59 Query 60 SAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRA 119 + VD R TG+ ELDRVLGGG+VPG+V LLAG+PGVGKSTLLLEVA++WA + R+ Sbjct 60 AEVDVEAARAKATGVPELDRVLGGGLVPGAVALLAGEPGVGKSTLLLEVAYQWAVTAGRS 119 Query 120 LYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMS 179 LYV+GEESAGQ+RLRA+R G E++LAA+SD+ +L ++ V+P ++IVDSVQT++ Sbjct 120 LYVTGEESAGQVRLRAER--TGNVHGEMFLAAESDLSAILGHVDAVKPGVLIVDSVQTVA 177 Query 180 TSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHF 239 + + +G GGVTQVRAVTA L A AK + ++LVGHVTKDG++AGPR LEHLVDVVL F Sbjct 178 SPQVEGSPGGVTQVRAVTAGLVALAKERGLPVVLVGHVTKDGSVAGPRVLEHLVDVVLQF 237 Query 240 EGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVT 299 EGD++ LRMVRG+KNRFGAADE+GCF L + GI G+ DPS LFL + PV GTA+TV Sbjct 238 EGDKHSTLRMVRGIKNRFGAADEIGCFELTEEGIVGVPDPSGLFLSRTAEPVPGTAVTVA 297 Query 300 LDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTV 359 ++GKRPL+GEVQAL+++ PRRAVSG+ AR AM+ AV+EK R+ + D+Y++TV Sbjct 298 VEGKRPLLGEVQALVSSSGMPQPRRAVSGLDSARVAMVLAVMEKRGRMKLGDKDVYVATV 357 Query 360 GGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQG 419 GGM++TEP+ DLA+ +AL S+ ++ L V +GEVGLAG+IRRV + RRL+EAAR G Sbjct 358 GGMKITEPAIDLALVLALTSSLHDVALSPRLVAVGEVGLAGEIRRVPNVGRRLAEAARLG 417 Query 420 FTIALVPPSDDPVPPGMHALRASTIVAALQ 449 FT ALVPP +P G+ L + +AL Sbjct 418 FTHALVPPDSGKLPDGIRVLEVPDVASALN 447 >gi|54022396|ref|YP_116638.1| DNA repair protein RadA [Nocardia farcinica IFM 10152] gi|54013904|dbj|BAD55274.1| putative DNA repair protein [Nocardia farcinica IFM 10152] Length=462 Score = 479 bits (1232), Expect = 5e-133, Method: Compositional matrix adjust. Identities = 266/432 (62%), Positives = 336/432 (78%), Gaps = 4/432 (0%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLS-AVGGTRRRSVAPASGAVPI 59 +A ++ +RCS C H AKWVG+C +CG WGTVDEVAV + A G RR++ P++ A PI Sbjct 1 MAKTKAIFRCSACSHEVAKWVGKCPDCGAWGTVDEVAVSAGAPGAPGRRAMLPSTAAAPI 60 Query 60 SAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQS-GRR 118 SA+D+ T+ PTG+ ELDRVLGGG+V GSV LL+G+PGVGKSTLLLEVAH+WA+ G + Sbjct 61 SAIDSQVTKARPTGVSELDRVLGGGVVAGSVVLLSGEPGVGKSTLLLEVAHQWARRPGEK 120 Query 119 ALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTM 178 ALYV+ EESAGQ+RLRADR G E +++LAA+SD+ VL +E V+P L++VDSVQTM Sbjct 121 ALYVTAEESAGQVRLRADRTGAVHE--QVFLAAESDLSIVLGHVEQVRPTLLVVDSVQTM 178 Query 179 STSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLH 238 EA+GV GGVTQVRAVTAALT+ AKA+ +A++LVGHVTKDG +AGPR+LEHLVDVVL Sbjct 179 LAPEAEGVIGGVTQVRAVTAALTSLAKASGIAVLLVGHVTKDGNVAGPRTLEHLVDVVLQ 238 Query 239 FEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITV 298 FEGD+N LRMVRG+KNRFG+ADEVGCF LH++GI + DPS LFL R PV GTA+TV Sbjct 239 FEGDKNSTLRMVRGIKNRFGSADEVGCFELHEDGIACVDDPSGLFLHHRTDPVPGTAVTV 298 Query 299 TLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLST 358 +DGKRPLVGEVQ L +PRRAVSG+ R AM+ AVL+ R+ + +D+Y +T Sbjct 299 AMDGKRPLVGEVQGLTVKTEIPAPRRAVSGLDYNRVAMVLAVLQSRGRVFLGKHDVYAAT 358 Query 359 VGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQ 418 VGGMRL EP+ADLA+A+A+ASA + LP V++GEVGLAG++R+V G+ARRL+EA R Sbjct 359 VGGMRLAEPAADLAIALAIASAECDTALPAGWVILGEVGLAGEVRKVTGVARRLAEAERL 418 Query 419 GFTIALVPPSDD 430 GFT ALVPP + Sbjct 419 GFTTALVPPGSE 430 >gi|326383081|ref|ZP_08204770.1| DNA repair protein RadA [Gordonia neofelifaecis NRRL B-59395] gi|326198217|gb|EGD55402.1| DNA repair protein RadA [Gordonia neofelifaecis NRRL B-59395] Length=456 Score = 478 bits (1230), Expect = 9e-133, Method: Compositional matrix adjust. Identities = 250/452 (56%), Positives = 322/452 (72%), Gaps = 4/452 (0%) Query 8 YRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISAVDAHRT 67 +RCS C H AKW GRC ECG WGT+ E A +A T SVAP+S AV I+ V + Sbjct 2 FRCSACGHQVAKWFGRCPECGEWGTIAESAPAAAAARTGTTSVAPSSPAVRITEVASDSA 61 Query 68 RPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEES 127 CPTGI E DRVLG G+VPGSV LLAG+PGVGKSTLLLE WA G+ ALYV+GEES Sbjct 62 SSCPTGIAEFDRVLGRGVVPGSVILLAGEPGVGKSTLLLETVKHWAAQGKTALYVTGEES 121 Query 128 AGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSEADGVT 187 AGQ+RLRA+R E IYLA+++D+ TVL +E V P L+IVDSVQTM + DGVT Sbjct 122 AGQVRLRAERTAAVHE--NIYLASETDLATVLGHVEAVAPTLLIVDSVQTMVATGTDGVT 179 Query 188 GGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRNGAL 247 GGVTQ+RAVT AL + AK + +A+ILVGHVTKDG +AGPRSLEHLVDVVL FEGDR+ +L Sbjct 180 GGVTQIRAVTTALVSLAKTSGIAVILVGHVTKDGNVAGPRSLEHLVDVVLAFEGDRHSSL 239 Query 248 RMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDGKRPLV 307 RMVRG+KNRFG +DEVGCF +GI + DPS +F+ + V G+A V +DG+R +V Sbjct 240 RMVRGIKNRFGPSDEVGCFEQRADGIHQVTDPSGIFVHHHESDVPGSAALVAMDGRRAMV 299 Query 308 GEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLTEP 367 G++QALL SPRRAVSG+ AR AM+ AV EKHA + + ++Y STVGGM++TEP Sbjct 300 GQIQALLNDTQMTSPRRAVSGLDSARVAMMLAVAEKHAGIKASSKEVYASTVGGMKVTEP 359 Query 368 SADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFTIALVP- 426 +ADLA+ +AL S++ ++ +P++ V IGEVGLAG++RRV +ARR++EA R GF A++P Sbjct 360 AADLAIFLALYSSHKDVAVPSSTVAIGEVGLAGEVRRVPSVARRVAEAKRLGFRHAIIPA 419 Query 427 -PSDDPVPPGMHALRASTIVAALQYMVDIADH 457 D+ +P G+ R + ++ A V D+ Sbjct 420 GSEDEELPRGIRISRVANLLEAQSAAVSRHDY 451 >gi|311896824|dbj|BAJ29232.1| putative DNA repair protein RadA [Kitasatospora setae KM-6054] Length=510 Score = 476 bits (1226), Expect = 3e-132, Method: Compositional matrix adjust. Identities = 258/451 (58%), Positives = 314/451 (70%), Gaps = 7/451 (1%) Query 2 ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASG-AVPIS 60 A R YRC+EC KWVGRC EC WGTV+E + R + P S A PI Sbjct 9 AKPRPSYRCTECGAQLLKWVGRCPECNAWGTVEEHGAVP----VRTTAAGPVSAPARPIG 64 Query 61 AVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL 120 VD TG+ ELDRVLGGG+VPG+V LLAG+PGVGKSTLLL+VA + A R L Sbjct 65 QVDGQVATARSTGVPELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDRHRTL 124 Query 121 YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST 180 YV+GEESAGQ+RLRADRI ++ +YLAA+ D+ VL IE V P+L+I+DSVQT+++ Sbjct 125 YVTGEESAGQVRLRADRIDAISD--HLYLAAEQDLGAVLGHIEAVNPSLLILDSVQTIAS 182 Query 181 SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE 240 +E DG GG QVR V AL A+K +A +LVGHVTKDG IAGPR LEHLVDVVL FE Sbjct 183 AELDGAPGGPAQVREVAGALIRASKDRGMATLLVGHVTKDGQIAGPRLLEHLVDVVLSFE 242 Query 241 GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL 300 GDR+ LR++RGVKNR+GA DEVGCF LHD GI G+ DPS LFL +R VAGT +TVTL Sbjct 243 GDRHARLRLIRGVKNRYGATDEVGCFELHDEGIVGLADPSGLFLTRRDKAVAGTCLTVTL 302 Query 301 DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVG 360 +GKRPLV EVQAL+ SPRR SG+ R AMI AV+E+H + + DIY +TVG Sbjct 303 EGKRPLVAEVQALMVDSQIPSPRRTTSGLESPRIAMILAVVERHGGVKLGKQDIYTATVG 362 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 G++LTEPSADLA+A+A+AS+ + PLP V IGEVGLAG++RRV G+ RRL+EA R GF Sbjct 363 GVKLTEPSADLAIALAVASSSTDTPLPNNLVAIGEVGLAGEVRRVTGVQRRLAEAHRLGF 422 Query 421 TIALVPPSDDPVPPGMHALRASTIVAALQYM 451 T ALVPP VP GM + S I AL+ + Sbjct 423 THALVPPDPGKVPAGMKVVEVSDIGEALRAI 453 >gi|226363785|ref|YP_002781567.1| DNA repair protein RadA [Rhodococcus opacus B4] gi|226242274|dbj|BAH52622.1| DNA repair protein RadA [Rhodococcus opacus B4] Length=460 Score = 475 bits (1222), Expect = 8e-132, Method: Compositional matrix adjust. Identities = 273/458 (60%), Positives = 343/458 (75%), Gaps = 12/458 (2%) Query 1 VANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVA--------P 52 +A +S +RCS C+ KWVGRC ECG WG++DE ++++V S+A P Sbjct 1 MAKLKSSFRCSSCQCTVPKWVGRCPECGSWGSMDEAPIVASVASRPGASLAKAGAGAVLP 60 Query 53 ASGAVPISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRW 112 ++ A PI+ +D+ TR PTGIDELDRVLGGG+VPGSV LLAG+PGVGKSTLLLEV H+W Sbjct 61 STPATPITRIDSTSTRAKPTGIDELDRVLGGGVVPGSVVLLAGEPGVGKSTLLLEVVHQW 120 Query 113 AQSG--RRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALV 170 A+ G R+LYV+GEESAGQ+RLRADR G E +YLAA+SD+ TVL +E V+P L+ Sbjct 121 ARRGPDDRSLYVTGEESAGQVRLRADRTGAVHE--RVYLAAESDLATVLGHVEQVRPTLL 178 Query 171 IVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLE 230 IVDSVQTM ++ DGV GGVTQV+AVT+ALT+ AKA+ V ++L+GHVTKDGA+AGPRSLE Sbjct 179 IVDSVQTMLAADVDGVVGGVTQVKAVTSALTSLAKASGVPVLLIGHVTKDGAVAGPRSLE 238 Query 231 HLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTP 290 HLVDVVLHFEGD++ LRMVRGVKNRFGAADEVGCF L ++GI GI DPS LFL R Sbjct 239 HLVDVVLHFEGDKHSTLRMVRGVKNRFGAADEVGCFELREDGIAGISDPSGLFLHHRAEA 298 Query 291 VAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIA 350 V GTA+TV +DGKRPL+GEVQAL+A +PRRAVSG+ AR AM+ AVL++ + IA Sbjct 299 VPGTAVTVMMDGKRPLLGEVQALVAATSMPAPRRAVSGLDSARVAMVLAVLDRRCGVQIA 358 Query 351 VNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMAR 410 D+Y +TVGGMR+TEPSADLA+A+A+ASA + +P V++GEVGLAG++RRV G+ R Sbjct 359 KQDVYAATVGGMRMTEPSADLALALAVASAVRDRAVPDGLVILGEVGLAGEVRRVPGVGR 418 Query 411 RLSEAARQGFTIALVPPSDDPVPPGMHALRASTIVAAL 448 RL+EA R GFT A+VP P GM + AA+ Sbjct 419 RLAEAHRLGFTRAIVPLDSGAAPKGMKVTEVGNLDAAI 456 >gi|134097049|ref|YP_001102710.1| DNA repair protein RadA [Saccharopolyspora erythraea NRRL 2338] gi|291007010|ref|ZP_06564983.1| DNA repair protein RadA [Saccharopolyspora erythraea NRRL 2338] gi|133909672|emb|CAL99784.1| DNA repair protein [Saccharopolyspora erythraea NRRL 2338] Length=460 Score = 469 bits (1207), Expect = 5e-130, Method: Compositional matrix adjust. Identities = 255/451 (57%), Positives = 332/451 (74%), Gaps = 5/451 (1%) Query 3 NARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISAV 62 AR +RC++C H AKWVGRC C WGT+DE A + + APA+ A PI+ V Sbjct 8 TARPGFRCADCGHEVAKWVGRCPSCQAWGTIDEAAAARPAL-AKVAAGAPATPARPIAEV 66 Query 63 DAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGR--RAL 120 D R TGI ELDRVLGGGIVPG+V L+AG+PGVGKSTLLLEVAHRWA +G +L Sbjct 67 DLDSARAVSTGIGELDRVLGGGIVPGAVVLMAGEPGVGKSTLLLEVAHRWAATGGGGPSL 126 Query 121 YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST 180 YV+GEESAGQ+RLRA+R + ++YL A+SD+ +VL +++V+P L+IVDSVQT+ + Sbjct 127 YVTGEESAGQVRLRAER--TDSVHPQLYLGAESDLGSVLGHVDSVKPGLLIVDSVQTVQS 184 Query 181 SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE 240 EA+G GGVTQVRAVT+AL A AK + ++LVGHVTKDGA+AGPR LEHLVDVVLHFE Sbjct 185 PEAEGSPGGVTQVRAVTSALVALAKERGLPVLLVGHVTKDGAVAGPRVLEHLVDVVLHFE 244 Query 241 GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL 300 GDR+ +LRM+RGVKNRFG +DEVGCF D+GI + DPS LF++++ T V GTA+TV + Sbjct 245 GDRHSSLRMLRGVKNRFGPSDEVGCFEQRDDGIAEVADPSGLFVNRQETQVEGTAVTVMV 304 Query 301 DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVG 360 +GKRPL+ EVQAL+ PRRAVSG+ AR +M+ AVL+KH + +++ +TVG Sbjct 305 EGKRPLLAEVQALVTPTQMTMPRRAVSGLDSARVSMMLAVLDKHGGVKTGDQEVFAATVG 364 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 GM+++EP+ADLAVA+A+AS+ +PLP+ + +GEVGLAG+IRRVN + RRL+EAAR GF Sbjct 365 GMKVSEPAADLAVALAVASSRRGVPLPSNVIAVGEVGLAGEIRRVNAVGRRLAEAARLGF 424 Query 421 TIALVPPSDDPVPPGMHALRASTIVAALQYM 451 ALVPP P+P G+ I AAL+ + Sbjct 425 DHALVPPDSGPLPRGVRTTVVPDIRAALRVL 455 >gi|227489402|ref|ZP_03919718.1| DNA repair protein RadA [Corynebacterium glucuronolyticum ATCC 51867] gi|227540996|ref|ZP_03971045.1| DNA repair protein RadA [Corynebacterium glucuronolyticum ATCC 51866] gi|227090580|gb|EEI25892.1| DNA repair protein RadA [Corynebacterium glucuronolyticum ATCC 51867] gi|227183256|gb|EEI64228.1| DNA repair protein RadA [Corynebacterium glucuronolyticum ATCC 51866] Length=457 Score = 468 bits (1203), Expect = 1e-129, Method: Compositional matrix adjust. Identities = 242/453 (54%), Positives = 311/453 (69%), Gaps = 8/453 (1%) Query 5 RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRR------SVAPASGAVP 58 +S + C+EC + + KW+GRC ECG WGT++E AV ++ G+R R ++ P S A P Sbjct 6 KSVHVCTECGYSTPKWLGRCPECGAWGTLEEQAVATSPSGSRSRQARTIQALTPTSPATP 65 Query 59 ISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRR 118 I+ V + PTGI ELDRVLG GIV GSV LLAG+PGVGKSTLLLEVA RWA GR Sbjct 66 ITKVKGATAKAVPTGIGELDRVLGAGIVKGSVVLLAGEPGVGKSTLLLEVASRWASLGRT 125 Query 119 ALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTM 178 ALYV+ EESAGQ+R+RA+R G + ++LAA+S++ V + V+P+LVIVDSVQTM Sbjct 126 ALYVTAEESAGQVRMRAERTGALHDT--LFLAAESNLDVVAGHVNQVKPSLVIVDSVQTM 183 Query 179 STSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLH 238 +GV GGV Q RAVTA LTA AK + L+LVGHVTKDG +AGPR LEHLVDVVL+ Sbjct 184 HAPGVEGVAGGVAQSRAVTAQLTALAKTTGIPLLLVGHVTKDGNVAGPRVLEHLVDVVLN 243 Query 239 FEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITV 298 FEGD N LRM+RG+KNRFGA DEVGCF +GI + DPS LFL R GTA+TV Sbjct 244 FEGDTNSNLRMLRGIKNRFGATDEVGCFEQQSDGIKEVEDPSGLFLSHRDATPDGTAVTV 303 Query 299 TLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLST 358 +DG RP++ EVQAL+ +PRR V+G+ R M+ AVL+ A + + D Y++T Sbjct 304 AMDGVRPMLAEVQALMVETQTKNPRRQVTGLDYNRVPMVLAVLQSRAGVKTSDKDAYVAT 363 Query 359 VGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQ 418 VGGM++ EP+ DLAVA+A ASA LP V++GEVGLAG+IRRV + RRL EAAR Sbjct 364 VGGMKIKEPATDLAVALATASAMKKTSLPARLVVLGEVGLAGEIRRVPNITRRLQEAARL 423 Query 419 GFTIALVPPSDDPVPPGMHALRASTIVAALQYM 451 G+ +A++P D P GM + +T+ AL+ + Sbjct 424 GYKMAIIPAGDKPKVAGMGVRQVATLTEALKIL 456 >gi|297159390|gb|ADI09102.1| DNA repair protein RadA [Streptomyces bingchenggensis BCW-1] Length=472 Score = 468 bits (1203), Expect = 1e-129, Method: Compositional matrix adjust. Identities = 261/451 (58%), Positives = 327/451 (73%), Gaps = 12/451 (2%) Query 5 RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPA---SGAVPISA 61 R YRCSEC +AKW+GRC EC WGTV+E G R+ AP S A+PI Sbjct 14 RPSYRCSECGWTTAKWLGRCPECHAWGTVEEF------GAPAVRTTAPGRVTSAALPIGQ 67 Query 62 VDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALY 121 VD + TG+DELDRVLGGG+VPG+V LLAG+PGVGKSTLLL+VA + A R LY Sbjct 68 VDGRQATARSTGVDELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDDHRTLY 127 Query 122 VSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTS 181 ++GEESA Q+RLRADRIG +E +YLAA++D+ VL ++TV+P+L+I+DSVQT+++ Sbjct 128 ITGEESASQVRLRADRIGALSE--HLYLAAETDLSAVLGHLDTVKPSLLILDSVQTVASP 185 Query 182 EADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEG 241 E DG GG+ QVR V AL A+K ++ +LVGHVTKDGAIAGPR LEHLVDVVLHFEG Sbjct 186 EIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHFEG 245 Query 242 DRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLD 301 DR+ LR+VRGVKNR+GA DEVGCF LHD GI G+ DPS LFL +R PV GT +TVTL+ Sbjct 246 DRHARLRLVRGVKNRYGATDEVGCFELHDEGIVGLADPSGLFLTRRDEPVPGTCLTVTLE 305 Query 302 GKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARL-AIAVNDIYLSTVG 360 G+RPLV EVQAL SPRR SG+ +R +M+ AVLE+ R+ A++ DIY +TVG Sbjct 306 GRRPLVAEVQALTVDSQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALSKRDIYSATVG 365 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 G++L+EP+ADLAVA+ALASA ++ PLP V IGEVGLAG++RRV G+ RRL+EAAR GF Sbjct 366 GVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGLAGEVRRVTGVQRRLAEAARLGF 425 Query 421 TIALVPPSDDPVPPGMHALRASTIVAALQYM 451 T ALVP +P GM L + I AL+ + Sbjct 426 THALVPGDPGKIPAGMRVLEVADIGDALRVL 456 >gi|320118619|dbj|BAJ65335.1| DNA repair protein [Actinoplanes missouriensis] Length=474 Score = 467 bits (1202), Expect = 2e-129, Method: Compositional matrix adjust. Identities = 251/453 (56%), Positives = 323/453 (72%), Gaps = 10/453 (2%) Query 5 RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSA-VGGTRRRSVAPASGAVPISAVD 63 R+ Y C C H KWVGRC ECG WG+V E V + V G S P+ A PI+ + Sbjct 12 RASYVCDACGHQPPKWVGRCPECGEWGSVIESTVSAPLVSGRVVSSRMPSEPARPIAQIS 71 Query 64 AHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQ-SGRRALYV 122 A R TG+ ELDRVLGGG+VPG+V LLAG+PGVGKSTLLL+VA +WA +G +L V Sbjct 72 AAPARAVATGVGELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAQQWAAGAGTPSLVV 131 Query 123 SGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSE 182 SGEES Q+RLRA+R+G + ++YLAA++D+ TV+ ++ V+P L+++DSVQT+S Sbjct 132 SGEESVSQVRLRAERLGALHD--KLYLAAENDLGTVIGHLDAVKPGLLVLDSVQTVSAPG 189 Query 183 ADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGD 242 +GV GGVTQVRAVTAAL + AK +A +LVGHVTKDG +AGPR LEHLVDVVLHFEGD Sbjct 190 TEGVPGGVTQVRAVTAALVSIAKERGIATVLVGHVTKDGQVAGPRVLEHLVDVVLHFEGD 249 Query 243 RNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDG 302 ++ +LR+VRGVKNRFGAADEVGCF +H+ GI + DPS LFL + PV GT +TV ++G Sbjct 250 KHSSLRLVRGVKNRFGAADEVGCFEMHEGGITSLPDPSGLFLTRYLEPVPGTCVTVAMEG 309 Query 303 KRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHAR-LAIAVNDIYLSTVGG 361 +R LV EVQAL+ GSPRR VSG+ AR AM+ AVLE+ + L ++ +++ +TVGG Sbjct 310 RRALVTEVQALIGAEVQGSPRRTVSGLDGARLAMVLAVLERRTKQLKLSNREVFAATVGG 369 Query 362 MRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFT 421 +RLTEPSADLA+A+A+AS +L +P T V IGEVGL G+IRRV + RRL+EAAR GF Sbjct 370 IRLTEPSADLAMALAVASGGLDLAMPPTLVAIGEVGLTGEIRRVGAVGRRLAEAARLGFR 429 Query 422 IALVPPSDDP-----VPPGMHALRASTIVAALQ 449 +ALVPP P P GM + + +ALQ Sbjct 430 VALVPPGCGPDGTTGTPKGMQVVEVGDLRSALQ 462 >gi|345008377|ref|YP_004810731.1| DNA repair protein RadA [Streptomyces violaceusniger Tu 4113] gi|344034726|gb|AEM80451.1| DNA repair protein RadA [Streptomyces violaceusniger Tu 4113] Length=474 Score = 464 bits (1193), Expect = 2e-128, Method: Compositional matrix adjust. Identities = 258/451 (58%), Positives = 325/451 (73%), Gaps = 12/451 (2%) Query 5 RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPA---SGAVPISA 61 R YRC+EC +AKW+GRC EC WGTV+E G R+ AP S A+PIS Sbjct 14 RPSYRCTECGWTTAKWLGRCPECQAWGTVEEY------GAPAVRTTAPGRVTSAALPISQ 67 Query 62 VDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALY 121 VD + TG+DELDRVLGGG+VPG+V LLAG+PGVGKSTLLL+VA + A R LY Sbjct 68 VDGRQATARGTGVDELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLY 127 Query 122 VSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTS 181 ++GEESA Q+RLRADRIG +E +YLAA++D+ VL +++V+P+L+++DSVQT+++ Sbjct 128 ITGEESASQVRLRADRIGALSE--HLYLAAETDLSAVLGHLDSVKPSLLVLDSVQTIASP 185 Query 182 EADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEG 241 E DG GG+ QVR V AL +K ++ +LVGHVTKDGAIAGPR LEHLVDVVL FEG Sbjct 186 EIDGAPGGMAQVREVAGALIRVSKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLQFEG 245 Query 242 DRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLD 301 DR+ LR+VRGVKNR+GA DEVGCF LHD GI G+ DPS LFL +R PV GT +TVTL+ Sbjct 246 DRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLE 305 Query 302 GKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARL-AIAVNDIYLSTVG 360 G+RPLV EVQAL SPRR SG+ +R +M+ AVLE+ R+ A+ DIY +TVG Sbjct 306 GRRPLVAEVQALTVDSQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYTATVG 365 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 G++L+EP+ADLAVA+ALASA ++ PLP V IGEVGLAG++RRV G+ RRLSEAAR GF Sbjct 366 GVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGLAGEVRRVTGVQRRLSEAARLGF 425 Query 421 TIALVPPSDDPVPPGMHALRASTIVAALQYM 451 T ALVP +P GM L + I AL+ + Sbjct 426 THALVPSDPGRIPDGMRVLEVADIGDALRML 456 >gi|269794027|ref|YP_003313482.1| DNA repair protein RadA [Sanguibacter keddieii DSM 10542] gi|269096212|gb|ACZ20648.1| DNA repair protein RadA [Sanguibacter keddieii DSM 10542] Length=473 Score = 461 bits (1187), Expect = 1e-127, Method: Compositional matrix adjust. Identities = 248/444 (56%), Positives = 317/444 (72%), Gaps = 6/444 (1%) Query 8 YRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPA-SGAVPISAVDAHR 66 YRC+EC ++KWVGRC EC WG+V E A +A G + + AP S A PI +D Sbjct 20 YRCTECGWTTSKWVGRCGECQEWGSVTEAA--AAASGPKTVASAPTRSVAQPIGEIDVDS 77 Query 67 TRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEE 126 + PTGI E DRVLGGGIVPG+V LLAG+PGVGKSTLLL+VA A++GRR LY++GEE Sbjct 78 AQAAPTGISEFDRVLGGGIVPGAVVLLAGEPGVGKSTLLLDVASTTARAGRRVLYITGEE 137 Query 127 SAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSEADGV 186 SAGQ+RLRA+RI + LAA++D+ VL QIE P L+IVDSVQT+++++ DG Sbjct 138 SAGQVRLRAERID--ALAPTLLLAAETDLGQVLGQIEATDPDLLIVDSVQTVASAQVDGS 195 Query 187 TGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRNGA 246 GGV QVR V +AL AAAK + ++LVGHVTKDGA+AGPR+LEHLVDVVL FEGDR+ Sbjct 196 PGGVGQVREVASALIAAAKGRNMPVVLVGHVTKDGAVAGPRTLEHLVDVVLQFEGDRHSR 255 Query 247 LRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDGKRPL 306 LRMVR VKNR+G DEVGCF L ++GI G+ DPS LFL V GT +TVTL+G+RPL Sbjct 256 LRMVRAVKNRYGPTDEVGCFELTEDGIAGLADPSGLFLSHINLAVPGTCVTVTLEGRRPL 315 Query 307 VGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLTE 366 E+Q+L+ +PRR SGI +R AMI AV+ +H + D+Y+ST+GG R+TE Sbjct 316 ALEIQSLVVASPLANPRRTTSGIDSSRLAMILAVIHRHLGARLTDADVYVSTIGGARVTE 375 Query 367 PSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFTIALVP 426 P+ADLA+A+A SA N P+P + IGEVGLAG++R V+G++RRLSEAAR GFT A+VP Sbjct 376 PAADLAIALATLSALENKPVPVGTIAIGEVGLAGELRAVSGISRRLSEAARLGFTRAVVP 435 Query 427 P-SDDPVPPGMHALRASTIVAALQ 449 P + P P GM L A+ + A+Q Sbjct 436 PGTSGPAPAGMTLLPAANLAEAVQ 459 >gi|227834040|ref|YP_002835747.1| DNA repair protein [Corynebacterium aurimucosum ATCC 700975] gi|262183474|ref|ZP_06042895.1| DNA repair protein RadA [Corynebacterium aurimucosum ATCC 700975] gi|227455056|gb|ACP33809.1| DNA repair protein [Corynebacterium aurimucosum ATCC 700975] Length=460 Score = 461 bits (1186), Expect = 1e-127, Method: Compositional matrix adjust. Identities = 245/451 (55%), Positives = 308/451 (69%), Gaps = 9/451 (1%) Query 5 RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVL-------SAVGGTRRRSVAPASGAV 57 R + CSEC VS KW+GRC ECG WGT+ E A +AV G R + P S AV Sbjct 6 RPVHTCSECGFVSPKWLGRCPECGSWGTLQETAAAESGTAAQAAVSGRRPTGLTPTSPAV 65 Query 58 PISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGR 117 PI+ V A T+ TGI ELDRVLG GIVPGSV L+AG+PGVGKSTLLLEVA RWAQ GR Sbjct 66 PITKVGASATKAINTGIGELDRVLGRGIVPGSVVLMAGEPGVGKSTLLLEVASRWAQLGR 125 Query 118 RALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQT 177 ALY + EESAGQ+R RA+R G E +YLAA+S++ V +E ++P+L+IVDSVQT Sbjct 126 TALYATAEESAGQVRARAERTGALHET--LYLAAESNLDVVFGHVEQLKPSLLIVDSVQT 183 Query 178 MSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVL 237 M + +GV GGV Q RAVTAALT AK + ++LVGHVTKDG +AGPR LEHLVDVVL Sbjct 184 MHAAGVEGVAGGVAQSRAVTAALTTLAKTTGIPILLVGHVTKDGNVAGPRVLEHLVDVVL 243 Query 238 HFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAIT 297 +FEGDR +LR++RG+KNRFGA DE+GCF GI + DPS LFL R + G+A+T Sbjct 244 NFEGDRQSSLRLLRGLKNRFGATDEMGCFEQTAAGIREVADPSGLFLSHRGSTPDGSAVT 303 Query 298 VTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLS 357 V +DG RP++ EVQAL P +PRR V+G+ R M+ AVL+ A D Y++ Sbjct 304 VAMDGVRPILAEVQALTVDPVAKNPRRVVTGLDANRVPMVLAVLQARAGERTNDKDAYVA 363 Query 358 TVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAAR 417 TVGGM++ EP+ DLAVA+A S+ PLP V+IGEVGLAG++RRV + RRL+EAAR Sbjct 364 TVGGMKIQEPATDLAVALATWSSLHEQPLPPKTVVIGEVGLAGEVRRVPNLDRRLAEAAR 423 Query 418 QGFTIALVPPSDDPVPPGMHALRASTIVAAL 448 G+ A+VPP V GM +A+T+ A+ Sbjct 424 LGYRYAIVPPGKVEVSGGMQVRQAATLSEAI 454 >gi|337766602|emb|CCB75313.1| DNA repair protein; 6-O-methylguanine-DNA methyltransferase [Streptomyces cattleya NRRL 8057] Length=474 Score = 461 bits (1186), Expect = 1e-127, Method: Compositional matrix adjust. Identities = 259/451 (58%), Positives = 324/451 (72%), Gaps = 12/451 (2%) Query 5 RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPA---SGAVPISA 61 R YRCSEC + KW+GRC EC WGTV+EV G R+ AP + A PI Sbjct 12 RPSYRCSECGWTTVKWLGRCGECQAWGTVEEV------GAPAVRTTAPGRVTTPARPIGQ 65 Query 62 VDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALY 121 VD + PTG+ ELDRVLGGG+VPG+V LLAG+PGVGKSTLLL+VA + A R LY Sbjct 66 VDGRQATARPTGVAELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGEQARTLY 125 Query 122 VSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTS 181 ++GEESAGQ+RLRADRIG ++ +YLAA++D+ VL ++ V+PAL+++DSVQT+++ Sbjct 126 ITGEESAGQVRLRADRIGALSD--HLYLAAETDLAAVLGHLDDVKPALLVLDSVQTVASP 183 Query 182 EADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEG 241 E DG GG+ QVR V AL A+K ++ ILVGHVTKDGAIAGPR LEHLVDVVLHFEG Sbjct 184 EIDGAPGGMAQVREVAGALIRASKERGMSTILVGHVTKDGAIAGPRLLEHLVDVVLHFEG 243 Query 242 DRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLD 301 DR+ LR++RGVKNR+GA DEVGCF LHD GI G+ DPS LFL +R PV GT +TVTL+ Sbjct 244 DRHARLRLIRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLE 303 Query 302 GKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARL-AIAVNDIYLSTVG 360 G+RPLV EVQAL SPRR SG+ +R +M+ AVLE+ R+ I DIY +TVG Sbjct 304 GRRPLVAEVQALTVASQIPSPRRTTSGLETSRVSMMLAVLEQRGRIHQIGKCDIYSATVG 363 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 G++L+EPSADLAVA+ALASA ++ PLP V +GEVGLAG++RRV G+ RRL+EAAR GF Sbjct 364 GVKLSEPSADLAVALALASAASDTPLPKNLVAVGEVGLAGEVRRVTGVQRRLAEAARLGF 423 Query 421 TIALVPPSDDPVPPGMHALRASTIVAALQYM 451 T ALVPP VP GM + + AL+ + Sbjct 424 THALVPPDPGRVPAGMRVTEVADVGEALRVL 454 >gi|290958385|ref|YP_003489567.1| DNA repair protein [Streptomyces scabiei 87.22] gi|260647911|emb|CBG71016.1| putative DNA repair protein [Streptomyces scabiei 87.22] Length=469 Score = 461 bits (1186), Expect = 1e-127, Method: Compositional matrix adjust. Identities = 257/454 (57%), Positives = 323/454 (72%), Gaps = 12/454 (2%) Query 2 ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAP---ASGAVP 58 A R YRC+EC +AKW+GRC EC WGTVDE + R+ AP + AVP Sbjct 8 AKDRPSYRCTECGWQTAKWLGRCPECQAWGTVDEYGTPAV------RTTAPGRVTTSAVP 61 Query 59 ISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRR 118 I VD + TG+ ELDRVLGGG+VPG+V LLAG+PGVGKSTLLL+VA + A + Sbjct 62 IGQVDGRQATARTTGVPELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADAENP 121 Query 119 ALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTM 178 LYV+GEESA Q+RLRADRIG + +YLAA++D+ VL ++ V+P+L+I+DSVQT+ Sbjct 122 TLYVTGEESASQVRLRADRIGALHD--HLYLAAETDLSAVLGHLDAVKPSLLILDSVQTV 179 Query 179 STSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLH 238 ++ E DG GG+ QVR V AL A+K ++ +LVGHVTKDGAIAGPR LEHLVDVVLH Sbjct 180 ASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLH 239 Query 239 FEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITV 298 FEGDR+ LR+VRGVKNR+GA DEVGCF LHD GI G+ DPS LFL +R PV GT +TV Sbjct 240 FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTV 299 Query 299 TLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARL-AIAVNDIYLS 357 TL+G+RPLV EVQ+L SPRR SG+ +R +M+ AVLE+ R+ A+ DIY + Sbjct 300 TLEGRRPLVAEVQSLTVDSQLPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSA 359 Query 358 TVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAAR 417 TVGG++L+EP+ADLA+A+ALASA + PLP V IGEVGLAG++RRV G+ RRLSEA R Sbjct 360 TVGGVKLSEPAADLAIALALASAATDTPLPKNLVAIGEVGLAGEVRRVTGVQRRLSEAHR 419 Query 418 QGFTIALVPPSDDPVPPGMHALRASTIVAALQYM 451 GFT ALVP VPPGM L + + AL+ + Sbjct 420 LGFTHALVPSDPGKVPPGMKVLEVADMGDALRVL 453 >gi|291452148|ref|ZP_06591538.1| DNA repair protein [Streptomyces albus J1074] gi|291355097|gb|EFE81999.1| DNA repair protein [Streptomyces albus J1074] Length=472 Score = 460 bits (1184), Expect = 2e-127, Method: Compositional matrix adjust. Identities = 255/454 (57%), Positives = 325/454 (72%), Gaps = 12/454 (2%) Query 2 ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAP---ASGAVP 58 A R YRC+EC +AKW+GRC EC WGTV+E G R+ AP S A+P Sbjct 8 AKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEY------GAPAVRTTAPGRVTSSALP 61 Query 59 ISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRR 118 I+ VD + PTG+ ELDRVLGGG+VPG+V L+AG+PGVGKSTLLL+VA + A R Sbjct 62 IAQVDGKQATARPTGVPELDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHR 121 Query 119 ALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTM 178 LYV+GEESA Q+RLRADRI ++ +YL A++D+ VL ++ V+P+L+++DSVQT+ Sbjct 122 TLYVTGEESASQVRLRADRIDALSD--HLYLTAETDLSAVLGHLDAVKPSLLVLDSVQTV 179 Query 179 STSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLH 238 ++ E DG GG+ QVR V AL A+K ++ +LVGHVTKDGAIAGPR LEHLVDVVLH Sbjct 180 ASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLH 239 Query 239 FEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITV 298 FEGDR+ LR+VRGVKNR+G DEVGCF LHD GI G+ DPS LFL +R PV GT +TV Sbjct 240 FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTV 299 Query 299 TLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARL-AIAVNDIYLS 357 TL+G+RPLV EVQAL SPRR SG+ +R +M+ AVLE+ R+ A+ DIY + Sbjct 300 TLEGRRPLVAEVQALTVDSQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSA 359 Query 358 TVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAAR 417 TVGG++L+EP+ADLAVA+ALASA ++ PLP V IGEVGLAG++RRV G+ RRL+EAAR Sbjct 360 TVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGLAGEVRRVTGVQRRLAEAAR 419 Query 418 QGFTIALVPPSDDPVPPGMHALRASTIVAALQYM 451 GFT ALVP VPPGM + + + AL+ + Sbjct 420 LGFTHALVPADPGKVPPGMKVVEVADMGDALRVL 453 >gi|309810825|ref|ZP_07704626.1| DNA repair protein RadA [Dermacoccus sp. Ellin185] gi|308435131|gb|EFP58962.1| DNA repair protein RadA [Dermacoccus sp. Ellin185] Length=459 Score = 460 bits (1183), Expect = 3e-127, Method: Compositional matrix adjust. Identities = 244/451 (55%), Positives = 320/451 (71%), Gaps = 7/451 (1%) Query 2 ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISA 61 A+ R+ YRC+EC + KWVGRC EC WGTV+EV AV VA + A PI Sbjct 5 ASKRTTYRCTECGWQTVKWVGRCGECQAWGTVEEVGGPVAVRTQAASKVA--NPAKPIRE 62 Query 62 VDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALY 121 VDA + TG+ E DRVLGGG+VPG+V L+AG+PG+GKSTLLL+VA R A++ + LY Sbjct 63 VDATKASITTTGVGEFDRVLGGGLVPGAVMLVAGEPGIGKSTLLLDVAARAARADTKVLY 122 Query 122 VSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTS 181 VSGEESA Q+RLRADR + +YLA+++D+ TVL I+ VQP +++DSVQT++++ Sbjct 123 VSGEESAAQVRLRADRTDA--VADTLYLASETDLATVLAHIDAVQPTFLVIDSVQTIASA 180 Query 182 EADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEG 241 E DG G V+QVR V AA+ AKA ++ +LVGHVTKDG+IAGPR LEHLVDVV+ FEG Sbjct 181 EVDGSAGNVSQVREVAAAIIQVAKARNISTVLVGHVTKDGSIAGPRLLEHLVDVVITFEG 240 Query 242 DRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLD 301 +R+ LR+VR VKNR+G DEVGCF L D GI G+ DPS+LFL R PVAGT +TVTL+ Sbjct 241 ERHSRLRLVRAVKNRYGPTDEVGCFDLSDGGIQGLSDPSSLFLTSRDKPVAGTCVTVTLE 300 Query 302 GKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGG 361 G+RPLV EVQAL+A GGSPRR SG+ +R AMI AVLE+ A ++ D Y+STVGG Sbjct 301 GRRPLVTEVQALVAPSAGGSPRRTTSGVDSSRTAMILAVLERRAGAPVSRADCYVSTVGG 360 Query 362 MRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFT 421 +L+EP++DLAVA++L S+ PLP + +GEVGL+GDIR V+G+ARRL+EAAR GF Sbjct 361 AKLSEPASDLAVALSLLSSAQEKPLPAGLIAVGEVGLSGDIRAVSGVARRLAEAARIGFD 420 Query 422 IALVPPSD---DPVPPGMHALRASTIVAALQ 449 A++P + P GM + + +A++ Sbjct 421 KAIIPAGSLGTEKAPAGMRIAECADLGSAMR 451 >gi|294630670|ref|ZP_06709230.1| DNA repair protein RadA [Streptomyces sp. e14] gi|292834003|gb|EFF92352.1| DNA repair protein RadA [Streptomyces sp. e14] Length=470 Score = 459 bits (1180), Expect = 6e-127, Method: Compositional matrix adjust. Identities = 258/451 (58%), Positives = 323/451 (72%), Gaps = 11/451 (2%) Query 5 RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPA---SGAVPISA 61 R YRC+EC +AKW+GRC EC WGTV+E AV R+ AP + A+PI Sbjct 11 RPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGSAPAV-----RTTAPGRVTTSALPIGQ 65 Query 62 VDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALY 121 VD + TG+ ELDRVLGGG+VPG+V LLAG+PGVGKSTLLL+VA + A R LY Sbjct 66 VDGRQATARSTGVPELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADDEHRTLY 125 Query 122 VSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTS 181 V+GEESA Q+RLRADRIG + +YLAA++D+ VL ++ V+P+L+I+DSVQT+++ Sbjct 126 VTGEESASQVRLRADRIGALDD--HLYLAAETDLAAVLGHLDAVKPSLLILDSVQTVASP 183 Query 182 EADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEG 241 E DG GG+ QVR V AL A+K ++ +LVGHVTKDGAIAGPR LEHLVDVVLHFEG Sbjct 184 EIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHFEG 243 Query 242 DRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLD 301 DR+ LR+VRGVKNR+GA DEVGCF LHD GI G+ DPS LFL +R PV GT +TVTL+ Sbjct 244 DRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLE 303 Query 302 GKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARL-AIAVNDIYLSTVG 360 G+RPLV EVQAL SPRR SG+ +R +M+ AVLE+ R+ A+ DIY +TVG Sbjct 304 GRRPLVAEVQALTVDSQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVG 363 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 G++L+EP+ADLAVA+ALASA ++ PLP V IGEVGLAG++RRV G+ RRLSEA R GF Sbjct 364 GVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGLAGEVRRVTGVQRRLSEAHRLGF 423 Query 421 TIALVPPSDDPVPPGMHALRASTIVAALQYM 451 T ALVP +P GM L + I AL+ + Sbjct 424 THALVPGDPGKIPAGMKVLEVADIGDALRVL 454 >gi|257057463|ref|YP_003135295.1| DNA repair protein RadA [Saccharomonospora viridis DSM 43017] gi|256587335|gb|ACU98468.1| DNA repair protein RadA [Saccharomonospora viridis DSM 43017] Length=454 Score = 458 bits (1179), Expect = 8e-127, Method: Compositional matrix adjust. Identities = 257/445 (58%), Positives = 326/445 (74%), Gaps = 4/445 (0%) Query 6 SQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISAVDAH 65 S YRC+EC + AKW+GRC EC WGT++E A R + AP+S A PI+ VD Sbjct 6 SSYRCAECGYEVAKWLGRCPECQAWGTIEERGDARAPI-ARVAAGAPSSPARPIAEVDLE 64 Query 66 RTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWA-QSGRRALYVSG 124 +R TG+ ELDRVLGGG+VPG V LLAG+PGVGKSTLLLEVA++WA SG ALYV+G Sbjct 65 ASRARATGVSELDRVLGGGLVPGVVVLLAGEPGVGKSTLLLEVAYQWAANSGASALYVTG 124 Query 125 EESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTSEAD 184 EESAGQ+RLRA+R G + ++LAA+SD+ VL ++ V+P L+IVDSVQTMS+ +A+ Sbjct 125 EESAGQVRLRAER--TGNVHDRMFLAAESDLAAVLGHVDDVKPGLLIVDSVQTMSSPQAE 182 Query 185 GVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEGDRN 244 G GGVTQV+AVTA L A AK + +LVGHVTK+G++AGPR LEHLVDVVLHFEGD++ Sbjct 183 GAPGGVTQVKAVTAGLVALAKERGLPTVLVGHVTKEGSVAGPRVLEHLVDVVLHFEGDKH 242 Query 245 GALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLDGKR 304 LRMVRGVKNRFGAADE+GCF L D+GI G+ DPS LFL++ V GTA+TVT++GKR Sbjct 243 STLRMVRGVKNRFGAADEIGCFELRDDGIVGVPDPSGLFLNRHAEAVPGTAVTVTVEGKR 302 Query 305 PLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRL 364 PL+GEVQAL+ PRRAVSG+ AR +M+ AVLEK + D+Y +TVGGM++ Sbjct 303 PLLGEVQALVTDSSLAQPRRAVSGLDSARVSMVLAVLEKRTGSPLGGKDVYTATVGGMKV 362 Query 365 TEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFTIAL 424 TEP+ DLAVA+A+ S + L V IGEVGLAG++RRV G+ RRL+EAAR GFT AL Sbjct 363 TEPAVDLAVALAVWSGMRDRALSPRLVAIGEVGLAGEVRRVTGVGRRLTEAARLGFTHAL 422 Query 425 VPPSDDPVPPGMHALRASTIVAALQ 449 VPP P+P + L + + +AL+ Sbjct 423 VPPDSGPLPADIKTLEVADLASALR 447 >gi|318062066|ref|ZP_07980787.1| DNA repair protein RadA [Streptomyces sp. SA3_actG] gi|333025265|ref|ZP_08453329.1| putative DNA repair protein RadA [Streptomyces sp. Tu6071] gi|332745117|gb|EGJ75558.1| putative DNA repair protein RadA [Streptomyces sp. Tu6071] Length=549 Score = 457 bits (1175), Expect = 3e-126, Method: Compositional matrix adjust. Identities = 256/451 (57%), Positives = 321/451 (72%), Gaps = 12/451 (2%) Query 2 ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPA---SGAVP 58 A R YRC+EC +AKW+GRC EC WGT++E G R+ AP + A+P Sbjct 8 AKERPSYRCTECGWQTAKWLGRCPECQAWGTIEEY------GAPAVRTTAPGRVTTSALP 61 Query 59 ISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRR 118 I+ VD + TG+ ELDRVLGGG+VPG+V LLAG+PGVGKSTLLL+VA + A G R Sbjct 62 IAQVDGRQATARSTGVPELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGPGHR 121 Query 119 ALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTM 178 LYV+GEESA Q+RLRADRI + E+YLAA++D+ VL ++ V+P+L++VDSVQT+ Sbjct 122 TLYVTGEESASQVRLRADRIDALDD--ELYLAAETDLSAVLGHLDAVKPSLLVVDSVQTV 179 Query 179 STSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLH 238 ++ E DG GG+ QVR V AL A+K +A +LVGHVTKDGAIAGPR LEHLVDVVL Sbjct 180 ASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS 239 Query 239 FEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITV 298 FEGDR+ LR+VRGVKNRFGA DEVGCF LHD GI G+ DPS LFL +R PV GT +TV Sbjct 240 FEGDRHARLRLVRGVKNRFGATDEVGCFELHDEGITGVTDPSGLFLTRRDEPVPGTCLTV 299 Query 299 TLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARL-AIAVNDIYLS 357 TL+G+RPLV EVQAL SPRR SG+ +R +M+ AVLE+ R+ A+ DIY + Sbjct 300 TLEGRRPLVAEVQALTVDSQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSA 359 Query 358 TVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAAR 417 TVGG++L+EP+ADLA+A+ALASA ++ PLP V IGEVGLAG++RRV G+ RRL+EA R Sbjct 360 TVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGLAGEVRRVTGVQRRLAEAHR 419 Query 418 QGFTIALVPPSDDPVPPGMHALRASTIVAAL 448 GFT ALVP +P GM + I AL Sbjct 420 LGFTHALVPADPGRIPAGMRVTEVADISDAL 450 >gi|302535144|ref|ZP_07287486.1| DNA repair protein RadA [Streptomyces sp. C] gi|302444039|gb|EFL15855.1| DNA repair protein RadA [Streptomyces sp. C] Length=471 Score = 456 bits (1174), Expect = 3e-126, Method: Compositional matrix adjust. Identities = 258/451 (58%), Positives = 323/451 (72%), Gaps = 6/451 (1%) Query 2 ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISA 61 A R YRCSEC + KW+GRC EC WGTV+E+ AV T V+ A A+PI+ Sbjct 10 AKDRPSYRCSECGWATVKWLGRCPECQAWGTVEEMGA-PAVRTTAAGRVSAA--ALPIAQ 66 Query 62 VDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALY 121 VD TG+DELDRVLGGG+VPG+V LLAG+PGVGKSTLLL+VA + A S R LY Sbjct 67 VDGRTATARSTGVDELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATSDHRTLY 126 Query 122 VSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTS 181 V+GEESA Q+RLRADRI + +YLAA++D+ VL ++ V+P+L+++DSVQT+++ Sbjct 127 VTGEESASQVRLRADRINALND--HLYLAAETDLSAVLGHLDAVKPSLLVLDSVQTIASP 184 Query 182 EADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEG 241 E DG GG+ QVR V AL A+K +A +LVGHVTKDGAIAGPR LEHLVDVVL FEG Sbjct 185 EIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLGFEG 244 Query 242 DRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLD 301 DR+ LR+VRGVKNR+GA DEVGCF LHD GI G+ DPS LFL +R V GT +TVTL+ Sbjct 245 DRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLE 304 Query 302 GKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARL-AIAVNDIYLSTVG 360 GKRPLV EVQAL SPRR SG+ +R +M+ AVLE+ R+ A+ DIY +TVG Sbjct 305 GKRPLVAEVQALTVDSQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVG 364 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 G++LTEP+ADLA+A+ALASA +++PLP V IGEVGLAG++RRV G+ RRL+EA R GF Sbjct 365 GVKLTEPAADLAIALALASAASDVPLPKNLVAIGEVGLAGEVRRVTGVQRRLAEAHRLGF 424 Query 421 TIALVPPSDDPVPPGMHALRASTIVAALQYM 451 T ALVP VPPGM + + AL+ + Sbjct 425 THALVPADPGKVPPGMKVTEVADMGDALRVL 455 >gi|294813203|ref|ZP_06771846.1| DNA repair protein radA [Streptomyces clavuligerus ATCC 27064] gi|326441685|ref|ZP_08216419.1| DNA repair protein RadA [Streptomyces clavuligerus ATCC 27064] gi|294325802|gb|EFG07445.1| DNA repair protein radA [Streptomyces clavuligerus ATCC 27064] Length=484 Score = 456 bits (1173), Expect = 4e-126, Method: Compositional matrix adjust. Identities = 257/451 (57%), Positives = 323/451 (72%), Gaps = 6/451 (1%) Query 2 ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVPISA 61 A R YRC+EC +AKW+GRC EC WGTV+E AV T V+ A A+PI Sbjct 8 AKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGT-PAVRTTAAGRVSTA--ALPIGQ 64 Query 62 VDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALY 121 VD + TG+DELDRVLGGG+VPG+V LLAG+PGVGKSTLLL+VA + A R LY Sbjct 65 VDGRQATARSTGVDELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASPEHRTLY 124 Query 122 VSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTS 181 V+GEESA Q+RLRADRI + ++YLAA++D+ VL ++ V+P+L+I+DSVQT+++ Sbjct 125 VTGEESASQVRLRADRINALDD--DLYLAAETDLSAVLGHLDAVRPSLLIMDSVQTVASP 182 Query 182 EADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEG 241 E DG GG+ QVR V AL A+K ++ +LVGHVTKDGAIAGPR LEHLVDVVLHFEG Sbjct 183 EIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHFEG 242 Query 242 DRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLD 301 DR+ LR+VRGVKNR+GA DEVGCF LHD GI G+ DPS LFL +R PV GT +TVTL+ Sbjct 243 DRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDAPVPGTCLTVTLE 302 Query 302 GKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARL-AIAVNDIYLSTVG 360 G+RPLV EVQAL SPRR SG+ +R +M+ AVLE+ R+ A+ DIY +TVG Sbjct 303 GRRPLVAEVQALTVDSQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVG 362 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 G++L+EP+ADLAVA+ALASA ++ PLP V IGEVGLAG++RRV G+ RRL+EA R GF Sbjct 363 GVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGLAGEVRRVTGVQRRLAEAHRLGF 422 Query 421 TIALVPPSDDPVPPGMHALRASTIVAALQYM 451 T ALVP VP GM + + AL+ + Sbjct 423 THALVPSDPGKVPAGMQVTEVANVGEALRVL 453 >gi|254386484|ref|ZP_05001787.1| DNA repair protein RadA [Streptomyces sp. Mg1] gi|194345332|gb|EDX26298.1| DNA repair protein RadA [Streptomyces sp. Mg1] Length=471 Score = 456 bits (1173), Expect = 5e-126, Method: Compositional matrix adjust. Identities = 257/452 (57%), Positives = 324/452 (72%), Gaps = 7/452 (1%) Query 2 ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRR-RSVAPASGAVPIS 60 A R YRC+EC + +AKW+GRC EC WGTV+E+ AV T R APA +PI+ Sbjct 10 AKDRPSYRCTECGYTTAKWLGRCPECQAWGTVEEMGGAPAVRTTAAGRVSAPA---LPIA 66 Query 61 AVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRAL 120 VD TG+DELDRVLGGG+VPG+V LLAG+PGVGKSTLLL+VA + A R L Sbjct 67 QVDGRTATARSTGVDELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDAHRTL 126 Query 121 YVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMST 180 YV+GEESA Q+RLRADRI ++ +YLAA++D+ VL ++ V+P+L+++DSVQT+++ Sbjct 127 YVTGEESASQVRLRADRINALSD--HLYLAAETDLSAVLGHLDAVKPSLLVLDSVQTVAS 184 Query 181 SEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFE 240 E DG GG+ QVR V AL A+K +A +LVGHVTKDGAIAGPR LEHLVDVVL FE Sbjct 185 PEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSFE 244 Query 241 GDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTL 300 GDR+ LR+VRGVKNR+GA DEVGCF LHD GI G+ DPS LFL +R V GT +TVTL Sbjct 245 GDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTL 304 Query 301 DGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARL-AIAVNDIYLSTV 359 +GKRPLV EVQAL SPRR SG+ +R +M+ AVLE+ R+ A+ DIY +TV Sbjct 305 EGKRPLVAEVQALTVDSQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATV 364 Query 360 GGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQG 419 GG++LTEP+ADLA+A+ALASA +++PLP V IGEVGLAG++RRV G+ RRL+EA R G Sbjct 365 GGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEVGLAGEVRRVTGVQRRLAEAHRLG 424 Query 420 FTIALVPPSDDPVPPGMHALRASTIVAALQYM 451 FT ALVP VP GM + + AL+ + Sbjct 425 FTHALVPVDPGKVPAGMKVTEVADMGDALRAL 456 >gi|318080457|ref|ZP_07987789.1| DNA repair protein RadA [Streptomyces sp. SA3_actF] Length=634 Score = 456 bits (1173), Expect = 5e-126, Method: Compositional matrix adjust. Identities = 255/451 (57%), Positives = 321/451 (72%), Gaps = 12/451 (2%) Query 2 ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPA---SGAVP 58 A R YRC+EC +AKW+GRC EC WGT++E + R+ AP + A+P Sbjct 8 AKERPSYRCTECGWQTAKWLGRCPECQAWGTIEEYGAPAV------RTTAPGRVTTSALP 61 Query 59 ISAVDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRR 118 I+ VD + TG+ ELDRVLGGG+VPG+V LLAG+PGVGKSTLLL+VA + A G R Sbjct 62 IAQVDGRQATARSTGVPELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGPGHR 121 Query 119 ALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTM 178 LYV+GEESA Q+RLRADRI + E+YLAA++D+ VL ++ V+P+L++VDSVQT+ Sbjct 122 TLYVTGEESASQVRLRADRIDALDD--ELYLAAETDLSAVLGHLDAVKPSLLVVDSVQTV 179 Query 179 STSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLH 238 ++ E DG GG+ QVR V AL A+K +A +LVGHVTKDGAIAGPR LEHLVDVVL Sbjct 180 ASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS 239 Query 239 FEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITV 298 FEGDR+ LR+VRGVKNRFGA DEVGCF LHD GI G+ DPS LFL +R PV GT +TV Sbjct 240 FEGDRHARLRLVRGVKNRFGATDEVGCFELHDEGITGVTDPSGLFLTRRDEPVPGTCLTV 299 Query 299 TLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARL-AIAVNDIYLS 357 TL+G+RPLV EVQAL SPRR SG+ +R +M+ AVLE+ R+ A+ DIY + Sbjct 300 TLEGRRPLVAEVQALTVDSQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSA 359 Query 358 TVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAAR 417 TVGG++L+EP+ADLA+A+ALASA ++ PLP V IGEVGLAG++RRV G+ RRL+EA R Sbjct 360 TVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGLAGEVRRVTGVQRRLAEAHR 419 Query 418 QGFTIALVPPSDDPVPPGMHALRASTIVAAL 448 GFT ALVP +P GM + I AL Sbjct 420 LGFTHALVPADPGRIPAGMRVTEVADISDAL 450 >gi|291438053|ref|ZP_06577443.1| DNA repair protein RadA [Streptomyces ghanaensis ATCC 14672] gi|291340948|gb|EFE67904.1| DNA repair protein RadA [Streptomyces ghanaensis ATCC 14672] Length=469 Score = 454 bits (1169), Expect = 1e-125, Method: Compositional matrix adjust. Identities = 256/451 (57%), Positives = 321/451 (72%), Gaps = 12/451 (2%) Query 5 RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPA---SGAVPISA 61 R YRC+EC +AKW+GRC EC WGTV+E G R+ AP + A+PI Sbjct 11 RPSYRCTECGWQTAKWLGRCPECQAWGTVEEY------GAPAVRTTAPGRVTTSALPIGQ 64 Query 62 VDAHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALY 121 VD + TG+ ELDRVLGGG+VPG+V L+AG+PGVGKSTLLL+VA + A R LY Sbjct 65 VDGRQATARSTGVPELDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLY 124 Query 122 VSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSVQTMSTS 181 V+GEESA Q+RLRADRI + +YLAA++D+ VL ++ V+P+L+I+DSVQT+++ Sbjct 125 VTGEESASQVRLRADRIHAIDD--HLYLAAETDLAAVLGHLDAVKPSLLIMDSVQTVASP 182 Query 182 EADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDVVLHFEG 241 E DG GG+ QVR V AL A+K ++ +LVGHVTKDGAIAGPR LEHLVDVVLHFEG Sbjct 183 EIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHFEG 242 Query 242 DRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTAITVTLD 301 DR+ LR+VRGVKNR+G DEVGCF LHD GI G+ DPS LFL +R PV GT +TVTL+ Sbjct 243 DRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLE 302 Query 302 GKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARL-AIAVNDIYLSTVG 360 G+RPLV EVQAL SPRR SG+ +R +M+ AVLE+ R+ A+ DIY +TVG Sbjct 303 GRRPLVAEVQALTVDSQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVG 362 Query 361 GMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGF 420 G++L+EP+ADLAVA+ALASA ++ PLP V IGEVGLAG++RRV G+ RRLSEA R GF Sbjct 363 GVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGLAGEVRRVTGVQRRLSEAHRLGF 422 Query 421 TIALVPPSDDPVPPGMHALRASTIVAALQYM 451 T ALVP VPPGM L + I AL+ + Sbjct 423 THALVPGDPGKVPPGMKVLEVADIGDALRVL 453 Lambda K H 0.319 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1017007352256 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40