BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3594
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610730|ref|NP_218111.1| hypothetical protein Rv3594 [Mycoba... 548 4e-154
gi|339296413|gb|AEJ48524.1| hypothetical protein CCDC5079_3335 [... 547 8e-154
gi|294993714|ref|ZP_06799405.1| hypothetical protein Mtub2_04176... 546 9e-154
gi|340628559|ref|YP_004747011.1| hypothetical protein MCAN_36061... 545 2e-153
gi|306786502|ref|ZP_07424824.1| hypothetical protein TMCG_01092 ... 540 6e-152
gi|289571836|ref|ZP_06452063.1| conserved hypothetical protein [... 451 7e-125
gi|289755724|ref|ZP_06515102.1| predicted protein [Mycobacterium... 351 6e-95
gi|29566442|ref|NP_818008.1| gp35 [Mycobacterium phage Che9d] >g... 305 3e-81
gi|298527074|ref|ZP_07014483.1| hypothetical protein TBAG_02331 ... 302 5e-80
gi|29566353|ref|NP_817920.1| gp69 [Mycobacterium phage Corndog] ... 274 1e-71
gi|339753196|gb|AEJ93222.1| gp30 [Mycobacterium phage ShiLan] 243 2e-62
gi|206600109|ref|YP_002241614.1| gp30 [Mycobacterium phage Pacc4... 242 4e-62
gi|118470609|ref|YP_889561.1| gp35 protein [Mycobacterium smegma... 212 5e-53
gi|339755327|gb|AEJ95335.1| gp51 [Mycobacterium phage Marvin] 209 2e-52
gi|160700680|ref|YP_001552360.1| gp31 [Mycobacterium phage Giles... 204 9e-51
gi|145223739|ref|YP_001134417.1| peptidoglycan binding domain-co... 204 1e-50
gi|120404350|ref|YP_954179.1| peptidoglycan binding domain-conta... 199 3e-49
gi|108801144|ref|YP_641341.1| N-acetylmuramyl-L-alanine amidase,... 176 3e-42
gi|169631880|ref|YP_001705529.1| bacteriophage protein [Mycobact... 173 3e-41
gi|343928392|ref|ZP_08767841.1| hypothetical protein GOALK_116_0... 154 1e-35
gi|343171080|gb|AEL97890.1| gp256 [Mycobacterium phage Dandelion] 152 5e-35
gi|281416148|ref|YP_003347884.1| gp236 [Mycobacterium phage ET08... 152 6e-35
gi|203459083|ref|YP_002224239.1| gp242 [Mycobacterium phage Scot... 152 6e-35
gi|29566719|ref|NP_818286.1| gp236 [Mycobacterium phage Bxz1] >g... 152 6e-35
gi|333918917|ref|YP_004492498.1| Gp35 protein [Amycolicicoccus s... 148 1e-33
gi|18496914|ref|NP_569764.1| hypothetical protein TM4_gp29 [Myco... 147 1e-33
gi|54022022|ref|YP_116264.1| hypothetical protein nfa580 [Nocard... 146 3e-33
gi|38232844|ref|NP_938611.1| hypothetical protein DIP0218 [Coryn... 141 1e-31
gi|172041113|ref|YP_001800827.1| hypothetical protein cur_1433 [... 134 2e-29
gi|291164872|gb|ADD80901.1| LysA [Rhodococcus phage ReqiPepy6] 132 5e-29
gi|29567014|ref|NP_818577.1| gp39 [Mycobacterium phage Barnyard]... 129 4e-28
gi|343927423|ref|ZP_08766895.1| hypothetical protein GOALK_093_0... 129 4e-28
gi|291164982|gb|ADD81010.1| LysA [Rhodococcus phage ReqiPoco6] 129 6e-28
gi|109521486|ref|YP_655914.1| gp49 [Mycobacterium phage Wildcat]... 127 1e-27
gi|109392397|ref|YP_654941.1| gp44 [Mycobacterium phage Cooper] ... 122 7e-26
gi|339755714|gb|AEJ95718.1| gp44 [Mycobacterium phage Zemanar] 120 2e-25
gi|339754632|gb|AEJ94646.1| gp43 [Mycobacterium phage ChrisnMich] 120 3e-25
gi|194100556|ref|YP_002003881.1| gp42 [Mycobacterium phage Nigel... 116 3e-24
gi|237654227|ref|YP_002890541.1| peptidoglycan-binding protein [... 97.4 2e-18
gi|296270159|ref|YP_003652791.1| N-acetylmuramyl-L-alanine amida... 79.0 8e-13
gi|291300999|ref|YP_003512277.1| N-acetylmuramoyl-L-alanine amid... 77.0 3e-12
gi|118470469|ref|YP_884944.1| gp236 protein [Mycobacterium smegm... 76.6 4e-12
gi|311743650|ref|ZP_07717456.1| gp35 protein [Aeromicrobium mari... 74.3 2e-11
gi|239987764|ref|ZP_04708428.1| hypothetical protein SrosN1_1069... 73.9 2e-11
gi|318057406|ref|ZP_07976129.1| hypothetical protein SSA3_05668 ... 72.0 1e-10
gi|302867079|ref|YP_003835716.1| N-acetylmuramoyl-L-alanine amid... 71.2 1e-10
gi|345007886|ref|YP_004800431.1| N-acetylmuramoyl-L-alanine amid... 71.2 1e-10
gi|315506511|ref|YP_004085398.1| n-acetylmuramoyl-l-alanine amid... 71.2 2e-10
gi|284030842|ref|YP_003380773.1| N-acetylmuramoyl-L-alanine amid... 71.2 2e-10
gi|345014884|ref|YP_004817238.1| N-acetylmuramoyl-L-alanine amid... 71.2 2e-10
>gi|15610730|ref|NP_218111.1| hypothetical protein Rv3594 [Mycobacterium tuberculosis H37Rv]
gi|15843207|ref|NP_338244.1| hypothetical protein MT3700 [Mycobacterium tuberculosis CDC1551]
gi|31794771|ref|NP_857264.1| hypothetical protein Mb3625 [Mycobacterium bovis AF2122/97]
63 more sequence titles
Length=275
Score = 548 bits (1411), Expect = 4e-154, Method: Compositional matrix adjust.
Identities = 274/275 (99%), Positives = 275/275 (100%), Gaps = 0/275 (0%)
Query 1 VGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
+GWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG
Sbjct 1 MGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
Query 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD
Sbjct 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
Query 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR
Sbjct 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
Query 181 AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG 240
AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG
Sbjct 181 AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG 240
Query 241 DKTIVDYLAELGNKVDALAAKLDAREGLDRPSDTR 275
DKTIVDYLAELGNKVDALAAKLDAREGLDRPSDTR
Sbjct 241 DKTIVDYLAELGNKVDALAAKLDAREGLDRPSDTR 275
>gi|339296413|gb|AEJ48524.1| hypothetical protein CCDC5079_3335 [Mycobacterium tuberculosis
CCDC5079]
Length=275
Score = 547 bits (1409), Expect = 8e-154, Method: Compositional matrix adjust.
Identities = 273/275 (99%), Positives = 275/275 (100%), Gaps = 0/275 (0%)
Query 1 VGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
+GWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG
Sbjct 1 MGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
Query 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD
Sbjct 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
Query 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR
Sbjct 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
Query 181 AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG 240
AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG
Sbjct 181 AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG 240
Query 241 DKTIVDYLAELGNKVDALAAKLDAREGLDRPSDTR 275
DKTIVDY+AELGNKVDALAAKLDAREGLDRPSDTR
Sbjct 241 DKTIVDYIAELGNKVDALAAKLDAREGLDRPSDTR 275
>gi|294993714|ref|ZP_06799405.1| hypothetical protein Mtub2_04176 [Mycobacterium tuberculosis
210]
Length=275
Score = 546 bits (1408), Expect = 9e-154, Method: Compositional matrix adjust.
Identities = 273/275 (99%), Positives = 274/275 (99%), Gaps = 0/275 (0%)
Query 1 VGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
+GWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG
Sbjct 1 MGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
Query 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
RPDLPGPLANLHIAHSGVVTIVAVGVCWH GRGSYPWLPTDNANWHMIGVECAWPTIRRD
Sbjct 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHTGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
Query 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR
Sbjct 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
Query 181 AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG 240
AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG
Sbjct 181 AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG 240
Query 241 DKTIVDYLAELGNKVDALAAKLDAREGLDRPSDTR 275
DKTIVDYLAELGNKVDALAAKLDAREGLDRPSDTR
Sbjct 241 DKTIVDYLAELGNKVDALAAKLDAREGLDRPSDTR 275
>gi|340628559|ref|YP_004747011.1| hypothetical protein MCAN_36061 [Mycobacterium canettii CIPT
140010059]
gi|340006749|emb|CCC45937.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=275
Score = 545 bits (1405), Expect = 2e-153, Method: Compositional matrix adjust.
Identities = 272/275 (99%), Positives = 274/275 (99%), Gaps = 0/275 (0%)
Query 1 VGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
+GWIGDP+WLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG
Sbjct 1 MGWIGDPVWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
Query 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD
Sbjct 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
Query 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR
Sbjct 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
Query 181 AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG 240
AEVAKD RGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG
Sbjct 181 AEVAKDMRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG 240
Query 241 DKTIVDYLAELGNKVDALAAKLDAREGLDRPSDTR 275
DKTIVDYLAELGNKVDALAAKLDAREGLDRPSDTR
Sbjct 241 DKTIVDYLAELGNKVDALAAKLDAREGLDRPSDTR 275
>gi|306786502|ref|ZP_07424824.1| hypothetical protein TMCG_01092 [Mycobacterium tuberculosis SUMu003]
gi|308328909|gb|EFP17760.1| hypothetical protein TMCG_01092 [Mycobacterium tuberculosis SUMu003]
Length=271
Score = 540 bits (1392), Expect = 6e-152, Method: Compositional matrix adjust.
Identities = 270/271 (99%), Positives = 271/271 (100%), Gaps = 0/271 (0%)
Query 1 VGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
+GWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG
Sbjct 1 MGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
Query 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD
Sbjct 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
Query 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR
Sbjct 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
Query 181 AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG 240
AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG
Sbjct 181 AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLG 240
Query 241 DKTIVDYLAELGNKVDALAAKLDAREGLDRP 271
DKTIVDYLAELGNKVDALAAKLDAREGLDRP
Sbjct 241 DKTIVDYLAELGNKVDALAAKLDAREGLDRP 271
>gi|289571836|ref|ZP_06452063.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289545590|gb|EFD49238.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=224
Score = 451 bits (1159), Expect = 7e-125, Method: Compositional matrix adjust.
Identities = 223/224 (99%), Positives = 224/224 (100%), Gaps = 0/224 (0%)
Query 1 VGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
+GWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG
Sbjct 1 MGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
Query 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD
Sbjct 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
Query 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR
Sbjct 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
Query 181 AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEV 224
AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEV
Sbjct 181 AEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEV 224
>gi|289755724|ref|ZP_06515102.1| predicted protein [Mycobacterium tuberculosis EAS054]
gi|289696311|gb|EFD63740.1| predicted protein [Mycobacterium tuberculosis EAS054]
Length=185
Score = 351 bits (901), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 175/186 (95%), Positives = 179/186 (97%), Gaps = 1/186 (0%)
Query 1 VGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
+GWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG
Sbjct 1 MGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
Query 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD
Sbjct 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
Query 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIG K G ++ + DPGNLSMDWFR
Sbjct 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGTKSMPGGSR-QMDPGNLSMDWFR 179
Query 181 AEVAKD 186
AEVAKD
Sbjct 180 AEVAKD 185
>gi|29566442|ref|NP_818008.1| gp35 [Mycobacterium phage Che9d]
gi|29425167|gb|AAN07953.1| gp35 [Mycobacterium phage Che9d]
Length=454
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 164/257 (64%), Positives = 185/257 (72%), Gaps = 15/257 (5%)
Query 1 VGWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARG 60
V W GDP+WLEEVLRPALG+RL+ L GW+ GHGDF+DIRGVM HHTG+SRE+A+SI G
Sbjct 198 VTWTGDPVWLEEVLRPALGDRLKTLPGWQNSGHGDFKDIRGVMVHHTGDSRESAQSIRNG 257
Query 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD 120
RPDL GPLAN+HIA G VTIVAVGVCWHAG+GSYPWLPT+NAN HMIG+ECAWPT R D
Sbjct 258 RPDLAGPLANIHIAPDGTVTIVAVGVCWHAGQGSYPWLPTNNANAHMIGIECAWPTPRPD 317
Query 121 --GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDW 178
YD ERWPDAQI+SMRD AAL LKL R IGHKE+AGAAQGKWDPGNL M W
Sbjct 318 LPKGYDPAERWPDAQIISMRDTCAALALKLELPATRVIGHKEWAGAAQGKWDPGNLDMSW 377
Query 179 FRAEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPV 238
FR EV KD G F P PPI P+P P +E WDQLR WP
Sbjct 378 FRGEVRKDMEG-FVFPGE-------HPPIEPQP-GPTLPPDYAKETWDQLR----IQWPQ 424
Query 239 LGDKTIVDYLAELGNKV 255
LG +T+VD +A +G K+
Sbjct 425 LGGRTLVDAVAVIGEKL 441
>gi|298527074|ref|ZP_07014483.1| hypothetical protein TBAG_02331 [Mycobacterium tuberculosis 94_M4241A]
gi|298496868|gb|EFI32162.1| hypothetical protein TBAG_02331 [Mycobacterium tuberculosis 94_M4241A]
Length=192
Score = 302 bits (773), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 147/150 (98%), Positives = 148/150 (99%), Gaps = 0/150 (0%)
Query 24 VLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRPDLPGPLANLHIAHSGVVTIVA 83
+LDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRPDLPGPLANLHIAHSGVVTIVA
Sbjct 1 MLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRPDLPGPLANLHIAHSGVVTIVA 60
Query 84 VGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSYDAGERWPDAQIVSMRDVAAA 143
VGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSYDAGERWPDAQIVSMRDVAAA
Sbjct 61 VGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSYDAGERWPDAQIVSMRDVAAA 120
Query 144 LTLKLGYGPERNIGHKEYAGAAQGKWDPGN 173
LTLKLGYGPERNIGHKEYAGAAQGKW PG
Sbjct 121 LTLKLGYGPERNIGHKEYAGAAQGKWGPGK 150
>gi|29566353|ref|NP_817920.1| gp69 [Mycobacterium phage Corndog]
gi|29425078|gb|AAN02001.1| gp69 [Mycobacterium phage Corndog]
Length=406
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/254 (60%), Positives = 179/254 (71%), Gaps = 15/254 (5%)
Query 5 GDPIWLEEVLRPALGERLRVLDGWRERG-HGDFRDIRGVMWHHTGNSRETAKSIARGRPD 63
GDP+WLE+VLRPALG+RLR L GW+ G G ++I G+MWHHTGNS E +SI+ GRPD
Sbjct 151 GDPVWLEDVLRPALGDRLRTLPGWKTDGVGGTMKEIWGIMWHHTGNSNEKPESISVGRPD 210
Query 64 LPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRD--G 121
L GPLA +HIA SG+VTIVAVG C HAG GSYP LPT+NAN + IG+ECAWPT R+D
Sbjct 211 LRGPLAQIHIAPSGIVTIVAVGPCNHAGLGSYPGLPTNNANQYTIGIECAWPTPRKDLPL 270
Query 122 SYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRA 181
YD ERWPDAQI+SMRDV AA+T LG+ RNI HKE+AGAAQGKWDPGNL M+WFR
Sbjct 271 GYDPNERWPDAQIISMRDVGAAITKYLGFDASRNISHKEWAGAAQGKWDPGNLDMNWFRG 330
Query 182 EVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLGD 241
E+ KD G F P P +P + P +EVWDQLR IE WP LG
Sbjct 331 EIQKDMDG-FVFPGETPGEAPQQPGPILAPD-------YTKEVWDQLR-IE---WPQLGG 378
Query 242 KTIVDYLAELGNKV 255
+T+VD +A +G K+
Sbjct 379 RTLVDAVAAIGEKL 392
>gi|339753196|gb|AEJ93222.1| gp30 [Mycobacterium phage ShiLan]
Length=398
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/260 (54%), Positives = 167/260 (65%), Gaps = 22/260 (8%)
Query 1 VGWIGDPIWLEEVLRPALGERLRVLDG-WRERGHGDFR-DIRGVMWHHTGNSRETAKSIA 58
V W GDP+WLE+VLR ALG+RL V W+ERG G DI GVM HHTGN RET I
Sbjct 144 VTWTGDPVWLEDVLREALGDRLVVAQADWKERGTGGVMGDIWGVMIHHTGNDRETVAGIR 203
Query 59 RGRPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIR 118
GRPDL GPL+ I G ++AVG C HAG GSYP + T+N N +IG ECAWPTIR
Sbjct 204 DGRPDLRGPLSQCLITPDGKCHLIAVGPCNHAGTGSYPGVGTNNGNQRLIGFECAWPTIR 263
Query 119 RDGSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDW 178
DGS+D +RWPDAQI++MRD AA+ +LG+ + IGHKE+AGA QGKWDPGNL M+W
Sbjct 264 PDGSFDPAQRWPDAQIITMRDATAAVLKRLGHDSKHVIGHKEWAGATQGKWDPGNLDMNW 323
Query 179 FRAEVAKDTRGEF---DHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRG 235
FR EV KD G + P P P P LP P D+ EVWDQLR +
Sbjct 324 FRGEVQKDLDGFVFPGEQPSAPQPG-----PALP----PDYDK----EVWDQLRIL---- 366
Query 236 WPVLGDKTIVDYLAELGNKV 255
WP LG +T+VD +A +G K+
Sbjct 367 WPQLGHRTLVDAVAAIGAKL 386
>gi|206600109|ref|YP_002241614.1| gp30 [Mycobacterium phage Pacc40]
gi|206287197|gb|ACI12541.1| gp30 [Mycobacterium phage Pacc40]
Length=402
Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 137/257 (54%), Positives = 166/257 (65%), Gaps = 16/257 (6%)
Query 1 VGWIGDPIWLEEVLRPALGERLRVLDG-WRERGHGDFR-DIRGVMWHHTGNSRETAKSIA 58
VG+ GDP+WLE+VLR ALG+RL V W+ERG G DI GVM HHTGN RET I
Sbjct 148 VGFSGDPVWLEDVLREALGDRLVVAQADWKERGTGGVMGDIWGVMIHHTGNDRETVAGIR 207
Query 59 RGRPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIR 118
GRPDL GPL+ I G ++AVG C HAG GSYP + T+N N +IG ECAWPTIR
Sbjct 208 DGRPDLRGPLSQCLITPDGKCHLIAVGPCNHAGTGSYPGVGTNNGNQRLIGFECAWPTIR 267
Query 119 RDGSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDW 178
DGS+D +RWPDAQI++MRD AA+ +LG+ + IGHKE+AGA QGKWDPGNL M+W
Sbjct 268 PDGSFDPAQRWPDAQIITMRDATAAVLKRLGHDSKHVIGHKEWAGATQGKWDPGNLDMNW 327
Query 179 FRAEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPV 238
FR EV KD G F P P A P + P +EVWDQLR + WP
Sbjct 328 FRGEVQKDLDG-FVFPGEQPSAPQPGPALPPD---------YDKEVWDQLRIL----WPQ 373
Query 239 LGDKTIVDYLAELGNKV 255
LG +T+VD +A +G K+
Sbjct 374 LGHRTLVDAVAAIGAKL 390
>gi|118470609|ref|YP_889561.1| gp35 protein [Mycobacterium smegmatis str. MC2 155]
gi|118171896|gb|ABK72792.1| gp35 protein [Mycobacterium smegmatis str. MC2 155]
Length=275
Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 121/260 (47%), Positives = 150/260 (58%), Gaps = 31/260 (11%)
Query 3 WIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRP 62
W GDP+WL +VLR A G L GWR RGHGDF+DIRGVM HHTG+ TA SIA GRP
Sbjct 7 WTGDPVWLADVLR-AEGVNLVEYPGWRTRGHGDFKDIRGVMVHHTGSDTATAASIANGRP 65
Query 63 DLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGS 122
DLPGPL+ LHIA G VTIVAVGV WHAG G YPW+P + NWH+IG+ECA
Sbjct 66 DLPGPLSQLHIARDGTVTIVAVGVAWHAGVGMYPWIPANMGNWHLIGIECANTGTSPTAP 125
Query 123 YDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRAE 182
+ + WPDAQ +M AA+ +L R IGHKEYAG AQGKWDPG ++MD RA+
Sbjct 126 HR--QNWPDAQYFAMVRCCAAINRRLAQTSARTIGHKEYAGRAQGKWDPGAINMDILRAD 183
Query 183 VAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLGDK 242
+ V+ P P+PR P + I + ++ + G E
Sbjct 184 IQNQI------------GVLEAPAPTPRPRVPVGEYIDV-LLYRPMEGAE---------- 220
Query 243 TIVDYLAELGNKVDALAAKL 262
+AEL +++AL A L
Sbjct 221 -----VAELQRRLNALGADL 235
>gi|339755327|gb|AEJ95335.1| gp51 [Mycobacterium phage Marvin]
Length=459
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 128/248 (52%), Positives = 154/248 (63%), Gaps = 15/248 (6%)
Query 5 GDPIWLEEVLRPALGERLRVLDGWRERGHGDFR-DIRGVMWHHTGNSRETAKSIARGRPD 63
GDP+WLEEVLR LG+RL V DGW+E G G +I GVM HHTGN + +SI GRPD
Sbjct 200 GDPVWLEEVLRKRLGDRLVVHDGWKEYGTGGVMGEIWGVMIHHTGNRNASWESIRNGRPD 259
Query 64 LPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSY 123
L GPL+ IA G +VAVG C HAG GSYP L +D N IG ECAWPTIR DGS+
Sbjct 260 LRGPLSQALIAPDGKFHLVAVGPCNHAGVGSYPGLGSD-GNRRAIGFECAWPTIRPDGSF 318
Query 124 DAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRAEV 183
D GERWPDAQI++MRD A+ LG+ GHKE+ GKWDPGN+ M+WFR EV
Sbjct 319 DKGERWPDAQILTMRDATRAVLEHLGHDHTHVCGHKEF-NKVDGKWDPGNMDMNWFRGEV 377
Query 184 AKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRGIEGRGWPVLGDKT 243
K GEFD P P P P + +P P D +L V+DQ+ G W +LG +T
Sbjct 378 RKALAGEFD-PKAPEP----EPQLPSQPGIPTDHDLL---VYDQICGR----WEMLGWRT 425
Query 244 IVDYLAEL 251
V+ LA +
Sbjct 426 PVEALATI 433
>gi|160700680|ref|YP_001552360.1| gp31 [Mycobacterium phage Giles]
gi|159136630|gb|ABW88426.1| gp31 [Mycobacterium phage Giles]
Length=402
Score = 204 bits (520), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 112/190 (59%), Positives = 136/190 (72%), Gaps = 8/190 (4%)
Query 4 IGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRPD 63
+GDP+WL +V+RP + + GWR RGHGDF+DIRGVM HHTG +A SIA GRPD
Sbjct 122 VGDPVWLADVVRPTV-AKFAEYPGWRNRGHGDFKDIRGVMVHHTGGP-ASAASIANGRPD 179
Query 64 LPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPT----IRR 119
L GPLA LHI+ G VT+VAVGV WHAG GSYPWLPT+ NWH+IG+EC WP I
Sbjct 180 LAGPLAQLHISRDGTVTVVAVGVAWHAGAGSYPWLPTNMGNWHLIGIECEWPYGEPGINE 239
Query 120 DGSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWF 179
+Y RW D +I+++R+ AA+ L+LG G +R IGHK+YAG AQGKWDPGN+SMDW
Sbjct 240 RNAYTV--RWRDPEIIALRNTCAAILLRLGLGVDRLIGHKDYAGRAQGKWDPGNMSMDWL 297
Query 180 RAEVAKDTRG 189
R EV KD G
Sbjct 298 RGEVRKDMDG 307
>gi|145223739|ref|YP_001134417.1| peptidoglycan binding domain-containing protein [Mycobacterium
gilvum PYR-GCK]
gi|315444065|ref|YP_004076944.1| negative regulator of beta-lactamase expression [Mycobacterium
sp. Spyr1]
gi|145216225|gb|ABP45629.1| Peptidoglycan-binding domain 1 protein [Mycobacterium gilvum
PYR-GCK]
gi|315262368|gb|ADT99109.1| negative regulator of beta-lactamase expression [Mycobacterium
sp. Spyr1]
Length=288
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/183 (58%), Positives = 122/183 (67%), Gaps = 3/183 (1%)
Query 2 GWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGR 61
GW GDP+WL EVLR A G + GWR RGHGDF+DIRGVM HHTG+ +A+SIARGR
Sbjct 6 GWRGDPVWLAEVLR-AEGLDVVEFPGWRNRGHGDFKDIRGVMVHHTGSDTASAESIARGR 64
Query 62 PDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDG 121
PDL GPL+ LHIA G VT+VA GV WHAG G YPWLP + NWH IG+ECA
Sbjct 65 PDLAGPLSQLHIARDGTVTVVAAGVAWHAGVGMYPWLPANMGNWHTIGIECANSGTSPTA 124
Query 122 SYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRA 181
+ WPDAQ ++ AA+ +LG R IGHKEYAG AQGKWDPG + MD R
Sbjct 125 PHR--RNWPDAQYAALIGCCAAICRRLGVPATRTIGHKEYAGRAQGKWDPGGIDMDRLRR 182
Query 182 EVA 184
+VA
Sbjct 183 DVA 185
>gi|120404350|ref|YP_954179.1| peptidoglycan binding domain-containing protein [Mycobacterium
vanbaalenii PYR-1]
gi|119957168|gb|ABM14173.1| Peptidoglycan-binding domain 1 protein [Mycobacterium vanbaalenii
PYR-1]
Length=283
Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/184 (56%), Positives = 121/184 (66%), Gaps = 3/184 (1%)
Query 2 GWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGR 61
GW GDP+WL +VLR A G + GWR+RGHGDF+DIRGVM HHTG++ TA SIA GR
Sbjct 6 GWRGDPVWLADVLR-AEGLDVVEFPGWRQRGHGDFKDIRGVMVHHTGSNSATAASIAFGR 64
Query 62 PDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDG 121
PDL GPL+ LHIA G VT+VA GV WHAG G YPWLP + NWH IG+ECA
Sbjct 65 PDLAGPLSQLHIARDGTVTVVAAGVAWHAGVGMYPWLPANMGNWHTIGIECANSGTSPTA 124
Query 122 SYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRA 181
+ WPDAQ ++ AA+ LG R IGHKEYAG AQGKWDPG + MD R
Sbjct 125 PHR--RNWPDAQYFALVGSCAAINRHLGQPAGRTIGHKEYAGRAQGKWDPGAIDMDQLRR 182
Query 182 EVAK 185
+V +
Sbjct 183 DVGE 186
>gi|108801144|ref|YP_641341.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC,
AmpD [Mycobacterium sp. MCS]
gi|119870276|ref|YP_940228.1| peptidoglycan binding domain-containing protein [Mycobacterium
sp. KMS]
gi|126436973|ref|YP_001072664.1| peptidoglycan binding domain-containing protein [Mycobacterium
sp. JLS]
gi|108771563|gb|ABG10285.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC,
AmpD [Mycobacterium sp. MCS]
gi|119696365|gb|ABL93438.1| Peptidoglycan-binding domain 1 protein [Mycobacterium sp. KMS]
gi|126236773|gb|ABO00174.1| Peptidoglycan-binding domain 1 protein [Mycobacterium sp. JLS]
Length=232
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/157 (55%), Positives = 104/157 (67%), Gaps = 2/157 (1%)
Query 27 GWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRPDLPGPLANLHIAHSGVVTIVAVGV 86
GW +RGHGDF DIRGVM HHTG+ TA SIA GRPDL GPL+ LHIA G VT+VA GV
Sbjct 6 GWTQRGHGDFDDIRGVMVHHTGSDTATAASIADGRPDLAGPLSQLHIARDGTVTVVAAGV 65
Query 87 CWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSYDAGERWPDAQIVSMRDVAAALTL 146
WHAG G Y WLP + N H IG+ECA + WPDAQ +++ AA+
Sbjct 66 AWHAGAGRYRWLPANTGNRHTIGIECANTGTGPTAPHR--TNWPDAQYLALVRCCAAIMR 123
Query 147 KLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRAEV 183
+LG+G R IGH+EYAG QGKWDPG + +D RA++
Sbjct 124 RLGFGAARTIGHREYAGGVQGKWDPGAIDLDTLRADI 160
>gi|169631880|ref|YP_001705529.1| bacteriophage protein [Mycobacterium abscessus ATCC 19977]
gi|169243847|emb|CAM64875.1| Bacteriophage protein [Mycobacterium abscessus]
Length=282
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/200 (53%), Positives = 131/200 (66%), Gaps = 5/200 (2%)
Query 3 WIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRP 62
W GDP+W+ ++LR A G GWR RGHGDF+DIRGVM HHTG+ +A SIA GRP
Sbjct 7 WTGDPVWIVDILR-AEGVNPVEYPGWRGRGHGDFKDIRGVMVHHTGSDSASAASIAEGRP 65
Query 63 DLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGS 122
DL GPL+ LHIA +G VT+VAVGV WHAG G YPWLPT+ NWH+IG+ECA
Sbjct 66 DLAGPLSQLHIARNGAVTVVAVGVAWHAGVGMYPWLPTNMGNWHLIGIECANTGTSPTAP 125
Query 123 YDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRAE 182
+ + WPDAQ ++ + AA+ +L R IGHKEYAG AQGKWDPG + MD R +
Sbjct 126 HR--QNWPDAQYSTLINCCAAINRRLAQTSARTIGHKEYAGRAQGKWDPGAIDMDVLRRD 183
Query 183 VAKDTRGEFDHPL-TPPPAV 201
+ +D G P TP P+V
Sbjct 184 I-QDQIGRVAIPAPTPRPSV 202
>gi|343928392|ref|ZP_08767841.1| hypothetical protein GOALK_116_00260 [Gordonia alkanivorans NBRC
16433]
gi|343761720|dbj|GAA14767.1| hypothetical protein GOALK_116_00260 [Gordonia alkanivorans NBRC
16433]
Length=355
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/192 (48%), Positives = 119/192 (62%), Gaps = 17/192 (8%)
Query 1 VGWIGDPIWLEEVLRPALGERLRVLD--GWRERGHGDFRDIRGVMWHHT-GNSRETAKSI 57
V W GDPIWL +VLR E L+V++ GWR RGHGDFRD+RGVM HHT G + + +
Sbjct 4 VAWTGDPIWLADVLR---AEGLKVIEHAGWRGRGHGDFRDLRGVMCHHTAGGGPDDWRVV 60
Query 58 ARGRPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTI 117
GRP LPGPLA L + G ++AVGV WHAG GS+P PTDNANWH+IG+E
Sbjct 61 QSGRPGLPGPLAQLVLERDGTFRVIAVGVAWHAGAGSHPGWPTDNANWHVIGIEGV---- 116
Query 118 RRDGSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMD 177
+ G+ WP AQ+ + R AA+ ++G +GHKE+ +++GK DP N M
Sbjct 117 ----NNGVGQAWPAAQMDAYRRGCAAILRRIGRPASDCVGHKEW--SSEGKIDP-NFDMV 169
Query 178 WFRAEVAKDTRG 189
FRAEVA+ G
Sbjct 170 SFRAEVARLITG 181
>gi|343171080|gb|AEL97890.1| gp256 [Mycobacterium phage Dandelion]
Length=476
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/208 (46%), Positives = 121/208 (59%), Gaps = 16/208 (7%)
Query 3 WIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRP 62
W GDP+WL+EVL A G V DG RGHGDF +I GV+ HHTG+ ET K IA+ P
Sbjct 174 WRGDPVWLKEVLEAA-GLVCHVYDGAYNRGHGDFGEIWGVVAHHTGSFGETPKGIAQ-HP 231
Query 63 DLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECA-----WPTI 117
L G + L++ +G T+ VG+ WHAG+GSYP LPT++AN IG+E A P
Sbjct 232 SL-GLASQLYLGRNGEYTLCGVGIAWHAGQGSYPGLPTNDANRLTIGIEAANDGGGSPPG 290
Query 118 RRDGSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMD 177
+RD W D Q + AA+ KLG R IGHKE+AG AQGKWDPG + M+
Sbjct 291 KRDA-------WSDVQYNAYVRGVAAILRKLGRDSSRVIGHKEWAGTAQGKWDPGGIDMN 343
Query 178 WFRAEVAKDTRGEFDHPLTPPPAVIARP 205
FRA+VA+ GE P ++A P
Sbjct 344 TFRADVAR-VMGELGTSTDPVLELLAMP 370
>gi|281416148|ref|YP_003347884.1| gp236 [Mycobacterium phage ET08]
gi|255927827|gb|ACU41448.1| gp236 [Mycobacterium phage ET08]
gi|339754442|gb|AEJ94458.1| gp236 [Mycobacterium phage Alice]
gi|339780853|gb|AEK06690.1| gp250 [Mycobacterium phage Sebata]
gi|343171646|gb|AEL98452.1| gp247 [Mycobacterium phage LinStu]
Length=476
Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/208 (46%), Positives = 121/208 (59%), Gaps = 16/208 (7%)
Query 3 WIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRP 62
W GDP+WL+EVL A G V DG RGHGDF +I GV+ HHTG+ ET K IA+ P
Sbjct 174 WRGDPVWLKEVLEAA-GLVCHVYDGAYNRGHGDFGEIWGVVAHHTGSFGETPKGIAQ-HP 231
Query 63 DLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECA-----WPTI 117
L G + L++ +G T+ VG+ WHAG+GSYP LPT++AN IG+E A P
Sbjct 232 SL-GLASQLYLGRNGEYTLCGVGIAWHAGQGSYPGLPTNDANRLTIGIEAANDGGGSPPG 290
Query 118 RRDGSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMD 177
+RD W D Q + AA+ KLG R IGHKE+AG AQGKWDPG + M+
Sbjct 291 KRDA-------WSDVQYNAYVRGVAAILRKLGRDSSRVIGHKEWAGTAQGKWDPGGIDMN 343
Query 178 WFRAEVAKDTRGEFDHPLTPPPAVIARP 205
FRA+VA+ GE P ++A P
Sbjct 344 TFRADVAR-VMGELGTSTDPVLELLAMP 370
>gi|203459083|ref|YP_002224239.1| gp242 [Mycobacterium phage ScottMcG]
gi|204305865|ref|YP_002224682.1| gp240 [Mycobacterium phage Cali]
gi|197312530|gb|ACH62885.1| gp242 [Mycobacterium phage ScottMcG]
gi|197312838|gb|ACH63191.1| gp240 [Mycobacterium phage Cali]
Length=476
Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/205 (47%), Positives = 121/205 (60%), Gaps = 10/205 (4%)
Query 3 WIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRP 62
W GDP+WL+EVL A G V DG RGHGDF +I GV+ HHTG+ ET K IA+ P
Sbjct 174 WRGDPVWLKEVLEAA-GLVCHVYDGAYNRGHGDFGEIWGVVAHHTGSFGETPKGIAQ-HP 231
Query 63 DLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGS 122
L G + L++ +G T+ VG+ WHAG+GSYP LPT++AN IG+E A G
Sbjct 232 SL-GLASQLYLGRNGEYTLCGVGIAWHAGQGSYPGLPTNDANRLTIGIEAA----NDGGG 286
Query 123 YDAGER--WPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
G+R W D Q + AA+ KLG R IGHKE+AG AQGKWDPG + M+ FR
Sbjct 287 SPPGKRDAWSDVQYNAYVRGVAAILRKLGRDSSRVIGHKEWAGTAQGKWDPGGIDMNTFR 346
Query 181 AEVAKDTRGEFDHPLTPPPAVIARP 205
A+VA+ GE P ++A P
Sbjct 347 ADVAR-VMGELGTSTDPVLELLAMP 370
>gi|29566719|ref|NP_818286.1| gp236 [Mycobacterium phage Bxz1]
gi|109393418|ref|YP_656217.1| gp239 [Mycobacterium phage Catera]
gi|203457556|ref|YP_002224902.1| gp239 [Mycobacterium phage Rizal]
8 more sequence titles
Length=476
Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/208 (46%), Positives = 121/208 (59%), Gaps = 16/208 (7%)
Query 3 WIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRP 62
W GDP+WL+EVL A G V DG RGHGDF +I GV+ HHTG+ ET K IA+ P
Sbjct 174 WRGDPVWLKEVLEAA-GLVCHVYDGAYNRGHGDFGEIWGVVAHHTGSFGETPKGIAQ-HP 231
Query 63 DLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECA-----WPTI 117
L G + L++ +G T+ VG+ WHAG+GSYP LPT++AN IG+E A P
Sbjct 232 SL-GLASQLYLGRNGEYTLCGVGIAWHAGQGSYPGLPTNDANRLTIGIEAANDGGGSPPG 290
Query 118 RRDGSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMD 177
+RD W D Q + AA+ KLG R IGHKE+AG AQGKWDPG + M+
Sbjct 291 KRDA-------WSDVQYNAYVRGVAAILRKLGRDSSRVIGHKEWAGTAQGKWDPGGIDMN 343
Query 178 WFRAEVAKDTRGEFDHPLTPPPAVIARP 205
FRA+VA+ GE P ++A P
Sbjct 344 TFRADVAR-VMGELGTSTDPVLELLAMP 370
>gi|333918917|ref|YP_004492498.1| Gp35 protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333481138|gb|AEF39698.1| Gp35 protein [Amycolicicoccus subflavus DQS3-9A1]
Length=369
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/189 (47%), Positives = 115/189 (61%), Gaps = 13/189 (6%)
Query 1 VGWIGDPIWLEEVLRPALGERLRVLDG--WRERGHGDFRDIRGVMWHHT-GNSRETAKSI 57
V WIG+ WL + LR E LRV++ WR+RGHG++RDIRGVM HHT G + +
Sbjct 33 VAWIGNLWWLADALR---EEGLRVVEQPDWRQRGHGEYRDIRGVMCHHTAGGGPNDWQVV 89
Query 58 ARGRPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTI 117
GRPDLPGPL+NL + G ++A GVCWHAGRGS+P PTDNANWH+IG+E I
Sbjct 90 LNGRPDLPGPLSNLVLERDGTYRVIASGVCWHAGRGSWPGWPTDNANWHVIGIEAVSRGI 149
Query 118 -RRDGSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSM 176
G YD W Q+ + A L + G+ +GHKEY +++GK DP + M
Sbjct 150 PDAQGRYD----WTPEQLDAYVRGCAVLVRRAGFPVRNVVGHKEY--SSEGKIDPAGIDM 203
Query 177 DWFRAEVAK 185
D FRA+V +
Sbjct 204 DDFRAQVQQ 212
>gi|18496914|ref|NP_569764.1| hypothetical protein TM4_gp29 [Mycobacterium phage TM4]
gi|4336065|gb|AAD17596.1| gp29 [Mycobacterium phage TM4]
Length=547
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/186 (46%), Positives = 110/186 (60%), Gaps = 11/186 (5%)
Query 3 WIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRP 62
W GDP+WL +VLR A G + L GW +RGHGD + GV+ HHTG+ + IA P
Sbjct 185 WTGDPVWLADVLR-AEGLNVVELPGWLDRGHGDMGRLWGVVCHHTGSDNTPSSEIAF-HP 242
Query 63 DLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGS 122
L G + +H+A +G VT+ VG+ WHAG GSYP LP DNAN IG+E + G+
Sbjct 243 SL-GLCSQIHLARNGTVTLCGVGIAWHAGVGSYPGLPEDNANAVTIGIEA-----QNSGT 296
Query 123 YDAG---ERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWF 179
YD WPDAQ + AA+ +LG + I HKE+AG QGKWDPG + M+ F
Sbjct 297 YDGAPHRTNWPDAQYDAYVKCCAAICRRLGVRADHVISHKEWAGRKQGKWDPGAIDMNIF 356
Query 180 RAEVAK 185
RA+V +
Sbjct 357 RADVQR 362
>gi|54022022|ref|YP_116264.1| hypothetical protein nfa580 [Nocardia farcinica IFM 10152]
gi|54013530|dbj|BAD54900.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=270
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/291 (39%), Positives = 148/291 (51%), Gaps = 54/291 (18%)
Query 6 DPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNS--RETAKSIARGRPD 63
DP+WL +VLR A G +R GWR+RGHGDF +I GV+ HHTG++ IA+ P
Sbjct 3 DPVWLPDVLRAA-GLEVREYPGWRDRGHGDFGEIWGVIAHHTGSNPPSNNPGHIAQ-HPQ 60
Query 64 LPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSY 123
L G + LH++ GV T+ VG+ WHAG GSYP LPT++AN IG+E
Sbjct 61 L-GLASQLHLSRDGVYTVCGVGIAWHAGNGSYPGLPTNDANRVTIGIEA---------EN 110
Query 124 DAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRAEV 183
+ E W Q + AA+ KLG G IGHKE+AGAAQGKWDPG + M+ FRA+V
Sbjct 111 NGTEGWSPRQYTAYVKGVAAILRKLGKGAGNVIGHKEWAGAAQGKWDPGGMDMNRFRADV 170
Query 184 AK------DTRGE-------FDHPLTPPPAVIARPPILPKPRNPRDDRILLEEVWDQLRG 230
K RGE F++ + + + N EVW+Q+
Sbjct 171 QKAIGDPTSVRGEGTVWGEMFENFKKTKVSYATAIYYIDQKVN---------EVWEQV-- 219
Query 231 IEGRGWPVLGDK------TIVDYL--------AELGNKVDALAAKLDAREG 267
GRGW LG T+VD + AEL + +L+A L+ EG
Sbjct 220 --GRGWKQLGTNAKGEPLTLVDAVAEHKAHTAAELADIKASLSAVLEKLEG 268
>gi|38232844|ref|NP_938611.1| hypothetical protein DIP0218 [Corynebacterium diphtheriae NCTC
13129]
gi|38199102|emb|CAE48724.1| Putative phage protein [Corynebacterium diphtheriae]
Length=479
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/218 (40%), Positives = 119/218 (55%), Gaps = 22/218 (10%)
Query 5 GDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRPDL 64
GDP++L +VL+ A G +++ DGWR+RGHGDF I+GV HHTG ++ IA P+L
Sbjct 230 GDPLFLPDVLK-AFGVKVQEWDGWRDRGHGDFTVIQGVFAHHTGTDKDIPGYIAD-HPEL 287
Query 65 PGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSYD 124
G + +H+ G IV G+ +HAGRGSYP PTDNAN IG+E A
Sbjct 288 -GLCSQIHLNRDGTAVIVGAGIAYHAGRGSYPGWPTDNANQVAIGIEAA---------SS 337
Query 125 AGERWPDAQIVSMRDVAAALTLKLGY--GPERNIGHKEYAGAAQGKWDPGNLSMDWFRAE 182
WP AQ+ + AA+ LG P+ +GHKEY+GAAQGKWDPG + M+ FR
Sbjct 338 GTSPWPPAQLDAYYRTCAAILWYLGKPATPQTLLGHKEYSGAAQGKWDPGGIDMNDFRRN 397
Query 183 VAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRIL 220
V H + PP + A + K +P ++
Sbjct 398 V--------QHYIDNPPFLAADAAHITKEEDPMIQSLI 427
>gi|172041113|ref|YP_001800827.1| hypothetical protein cur_1433 [Corynebacterium urealyticum DSM
7109]
gi|171852417|emb|CAQ05393.1| hypothetical protein cu1433 [Corynebacterium urealyticum DSM
7109]
Length=302
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/312 (34%), Positives = 155/312 (50%), Gaps = 63/312 (20%)
Query 3 WIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRP 62
W GDP+WL +V+R A G ++ L GW+ G GDF I+G+M HHTG + +A+ IAR
Sbjct 9 WRGDPMWLADVIR-AYGVTVKELPGWKLWGMGDFAAIQGIMVHHTGANTTSAQYIARNS- 66
Query 63 DLPGPLAN-LHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDG 121
L G L++ +H++ +GV T+ VG+ +HAGRGS+P PT+NAN IG+E
Sbjct 67 GLGGALSSQIHLSRTGVATMCGVGIAYHAGRGSHPGWPTNNANAVSIGIEA--------- 117
Query 122 SYDAGERWPDAQIVSMRDVAAALTLKLGY--GPERNIGHKEYAGAAQGKWDPGN------ 173
D WP Q+ + + AA+ +KLG + I H EY+ AAQGKWDPG
Sbjct 118 QSDGTSPWPAVQMEAYYKICAAILMKLGKRATTKTLIAHWEYSRAAQGKWDPGAGNGVPG 177
Query 174 --LSMDWFRAEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDRIL----------- 220
+ MD FRA V +H + PP R LP P+ P+ + +L
Sbjct 178 AVMDMDVFRARV--------NHYIDNPP---WRRAPLPAPK-PKGEPLLTIKYFRDFITG 225
Query 221 --------LEEVWDQLRGIEGR----GWPVLGDK------TIVDYLAELGNKVDALAAKL 262
++++ +QL G R GW LG + T+VD LA L ++ + +
Sbjct 226 YIGPVISDVKDIREQLTGGRNRGEYPGWSQLGRRPDGRGLTLVDSLASLHQRITTIETSI 285
Query 263 DAREGLDRPSDT 274
L + + T
Sbjct 286 RELRTLLQQATT 297
>gi|291164872|gb|ADD80901.1| LysA [Rhodococcus phage ReqiPepy6]
Length=265
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/172 (44%), Positives = 101/172 (59%), Gaps = 11/172 (6%)
Query 12 EVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRPDLPGPLANL 71
+VLR A G +++ D WR+RG GDF I GV+ HHTG++ +A SIA G L G L+ +
Sbjct 2 DVLR-AFGVKVKEFDAWRDRGQGDFFTIWGVIAHHTGSNNASAASIAYGHEGLKGLLSQI 60
Query 72 HIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSYDAGERWPD 131
H+ +GV TI G+ WHAG GS+P + T+NAN IGVE + D WP
Sbjct 61 HLDRNGVATITGAGIAWHAGVGSWPGIQTNNANAVTIGVEA---------NSDGVSPWPP 111
Query 132 AQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRAEV 183
+ + + AA+ LG+ R IGHKE+A QGKWDPG + M FRA+V
Sbjct 112 EMLDAYHRICAAICWFLGHSSLRTIGHKEWA-KVQGKWDPGGIDMAQFRAKV 162
>gi|29567014|ref|NP_818577.1| gp39 [Mycobacterium phage Barnyard]
gi|29425739|gb|AAN02093.1| gp39 [Mycobacterium phage Barnyard]
Length=351
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/189 (43%), Positives = 109/189 (58%), Gaps = 12/189 (6%)
Query 5 GDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRPDL 64
GD +WL ++LR A G ++V DG RGHGD D+ G++ HHTG+ + +SIA P L
Sbjct 5 GDVVWLPDILRSA-GLPVQVADGANNRGHGDMADVWGIVDHHTGSDNASWQSIAF-HPSL 62
Query 65 PGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSYD 124
G + LH+++ G+ T+ VG+ WHAG GS+P L T+NAN IG+E A DG
Sbjct 63 -GLASQLHLSYGGLFTVCGVGIAWHAGNGSWPGLGTNNANPRTIGIEAA-----NDGGGK 116
Query 125 AGE----RWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
G WP Q + AA+ L +IGHKE+AGAAQGKWDPG + M+ FR
Sbjct 117 PGRPHRADWPAVQYDHYVEGNAAILKFLNEPVTHSIGHKEWAGAAQGKWDPGGIDMNLFR 176
Query 181 AEVAKDTRG 189
++ RG
Sbjct 177 KDIESAMRG 185
>gi|343927423|ref|ZP_08766895.1| hypothetical protein GOALK_093_00090 [Gordonia alkanivorans NBRC
16433]
gi|343762603|dbj|GAA13821.1| hypothetical protein GOALK_093_00090 [Gordonia alkanivorans NBRC
16433]
Length=366
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/177 (45%), Positives = 101/177 (58%), Gaps = 13/177 (7%)
Query 4 IGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRPD 63
+ DP+WL +VLR A G R + G ERGHGDF I G HHTG+ ET + IA+
Sbjct 1 MADPVWLPDVLR-AEGLRCDIYPGAFERGHGDFGTIWGPFMHHTGSFGETPQGIAQHSS- 58
Query 64 LPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSY 123
G + LH+A +GVVT+ VGV WHAG GS+P +P +N N IG+E A +
Sbjct 59 -LGLASQLHLAANGVVTLCGVGVAWHAGTGSWPGIPANNGNAVTIGIEAA---------H 108
Query 124 DAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
+ W DAQ + V A+ +LG + + HKEY GA QGKWDPGNL M FR
Sbjct 109 NGTAAWSDAQYGAYLKVVRAINKRLGNPWNKVVAHKEY-GAIQGKWDPGNLDMKLFR 164
>gi|291164982|gb|ADD81010.1| LysA [Rhodococcus phage ReqiPoco6]
Length=265
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/172 (43%), Positives = 100/172 (59%), Gaps = 11/172 (6%)
Query 12 EVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRPDLPGPLANL 71
+VLR A G +++ + WR+RG GDF I GV+ HHTG++ +A SIA G L G L+ +
Sbjct 2 DVLR-AFGVKVKEFEAWRDRGQGDFFTIWGVITHHTGSNNASAASIAYGHEGLKGLLSQI 60
Query 72 HIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSYDAGERWPD 131
H+ + V TI G+ WHAG GS+P + T+NAN IGVE + D WP
Sbjct 61 HLDRNSVATITGAGIAWHAGVGSWPGIQTNNANAVTIGVEA---------NSDGVSPWPP 111
Query 132 AQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRAEV 183
+ + + AA+ LG+ R IGHKE+A QGKWDPG + M FRA+V
Sbjct 112 EMLDAYHRICAAICWFLGHSSLRTIGHKEWA-KVQGKWDPGGVDMAQFRAKV 162
>gi|109521486|ref|YP_655914.1| gp49 [Mycobacterium phage Wildcat]
gi|91980938|gb|ABE67654.1| gp49 [Mycobacterium phage Wildcat]
Length=502
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/182 (47%), Positives = 109/182 (60%), Gaps = 6/182 (3%)
Query 2 GWIGDPIWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGR 61
G+ GDP WL +VLR A G R+ +DGW+ RG GD GVM+HHTG+ ET + IA
Sbjct 196 GFTGDPWWLADVLR-AEGLRVFEVDGWQNRGQGDQGTFWGVMFHHTGSPNETPEGIAF-H 253
Query 62 PDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDG 121
P L G A++ I +G V + +G HAGRG YP LPT+NAN MIGVE A R+D
Sbjct 254 PTL-GLAAHILIKPNGDVWVCGIGKANHAGRGDYPGLPTNNANPVMIGVEVA-ILPRKDA 311
Query 122 SYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRA 181
+ G WPD Q + V AA+ KLG +R I H+E+ AQGKWDPG + M+ R
Sbjct 312 PHREG--WPDVQYDATVKVHAAILRKLGLRADRCISHREWGERAQGKWDPGAIDMNIHRR 369
Query 182 EV 183
+V
Sbjct 370 DV 371
>gi|109392397|ref|YP_654941.1| gp44 [Mycobacterium phage Cooper]
gi|88910231|gb|ABD58161.1| gp44 [Mycobacterium phage Cooper]
Length=570
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/199 (43%), Positives = 110/199 (56%), Gaps = 20/199 (10%)
Query 3 WIGDPIWLEEVLRPALGERLRVL---DG--WRERGHGDFRDIRGVMWHHTGNSRETAKSI 57
W GDP++L +VLR A G + DG W +RGHGDF I V+WHHTG+ ET + I
Sbjct 210 WRGDPLFLPQVLR-AFGVNVSTYTDADGIRWDQRGHGDFGKISWVLWHHTGSVNETDEGI 268
Query 58 ARGRPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTI 117
A P L G AN+ I G V + G+ WH G G YP +P D N IG+EC++
Sbjct 269 AH-HPAL-GLAANMLIHPDGHVVLTGSGIAWHGGIGIYPGIPEDGINQVSIGIECSYGP- 325
Query 118 RRDGSYDAGERWPDAQIVSMRDVAAALTLKLG--YGPERNIGHKEYAGA-------AQGK 168
+G Y WP AQ+ +M V AA++ LG + I HK +AGA QGK
Sbjct 326 DENGQYTL--PWPTAQMNAMIAVGAAISWFLGDTLPVDHQISHKAWAGADNPLGINKQGK 383
Query 169 WDPGNLSMDWFRAEVAKDT 187
DPGNL M+WFRA++A T
Sbjct 384 PDPGNLDMNWFRAQIAART 402
>gi|339755714|gb|AEJ95718.1| gp44 [Mycobacterium phage Zemanar]
Length=578
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/191 (44%), Positives = 104/191 (55%), Gaps = 20/191 (10%)
Query 3 WIGDPIWLEEVLRPALGERLRVL---DG--WRERGHGDFRDIRGVMWHHTGNSRETAKSI 57
W GDP++L ++LR A G + DG W ERGHGDF I V+WHHTG+ ET I
Sbjct 210 WRGDPLFLPQLLR-AFGVSVTTYTDADGIRWDERGHGDFGKISWVLWHHTGSVNETDNGI 268
Query 58 ARGRPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTI 117
A P L G AN+ I G V + G+ WH G G YP +P D N IG+EC++
Sbjct 269 AH-HPAL-GLAANMLIHPDGHVVLTGSGIAWHGGIGVYPGIPEDGINQISIGIECSYGP- 325
Query 118 RRDGSYDAGERWPDAQIVSMRDVAAALTLKLG--YGPERNIGHKEYAGA-------AQGK 168
RDG Y WP+AQ+ +M V A++ LG P I HKE+AGA QGK
Sbjct 326 DRDGRYTL--PWPEAQMNAMIAVGGAISWFLGDTLPPSHQIAHKEWAGADNPLGVNKQGK 383
Query 169 WDPGNLSMDWF 179
DPGNL M WF
Sbjct 384 PDPGNLDMTWF 394
>gi|339754632|gb|AEJ94646.1| gp43 [Mycobacterium phage ChrisnMich]
Length=578
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/191 (44%), Positives = 104/191 (55%), Gaps = 20/191 (10%)
Query 3 WIGDPIWLEEVLRPALGERLRVL---DG--WRERGHGDFRDIRGVMWHHTGNSRETAKSI 57
W GDP++L ++LR A G + DG W +RGHGDF I V+WHHTG+ ET I
Sbjct 210 WRGDPLFLPQLLR-AFGVSVTTYTDADGIRWDQRGHGDFGKISWVLWHHTGSVNETDNGI 268
Query 58 ARGRPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTI 117
A P L G AN+ I G V + G+ WH G G YP +P D N IG+EC++
Sbjct 269 AH-HPAL-GLAANMLIHPDGHVVLTGSGIAWHGGVGVYPGIPEDGINQVSIGIECSYGP- 325
Query 118 RRDGSYDAGERWPDAQIVSMRDVAAALTLKLG--YGPERNIGHKEYAGA-------AQGK 168
RDG Y WP+AQ+ +M V A++ LG P I HKE+AGA QGK
Sbjct 326 DRDGRYTL--PWPEAQMNAMIAVGGAISWFLGDTLPPSHQIAHKEWAGADNPLGVNKQGK 383
Query 169 WDPGNLSMDWF 179
DPGNL M WF
Sbjct 384 PDPGNLDMTWF 394
>gi|194100556|ref|YP_002003881.1| gp42 [Mycobacterium phage Nigel]
gi|192758272|gb|ACF05045.1| gp42 [Mycobacterium phage Nigel]
Length=577
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/191 (43%), Positives = 103/191 (54%), Gaps = 20/191 (10%)
Query 3 WIGDPIWLEEVLRPALGERLRVL---DG--WRERGHGDFRDIRGVMWHHTGNSRETAKSI 57
W GDP++L ++LR A G + DG W +RGHGDF I V+WHHTG+ ET I
Sbjct 210 WRGDPLFLPQLLR-AFGVSVTTYTDADGIPWDQRGHGDFGAITWVLWHHTGSVNETDNGI 268
Query 58 ARGRPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTI 117
A P L G AN+ I G V + G+ WH G G YP +P D N IG+EC++
Sbjct 269 AH-HPAL-GLAANMLIHPDGHVVLTGSGIAWHGGAGIYPGIPEDGINQVSIGIECSYGP- 325
Query 118 RRDGSYDAGERWPDAQIVSMRDVAAALTLKLG--YGPERNIGHKEYAG-------AAQGK 168
R+G Y WP+AQ+ +M V A++ LG P I HKE+AG QGK
Sbjct 326 DRNGQYTL--PWPEAQMNAMIAVGGAISWFLGDTLPPSHQIAHKEWAGRDNPLGVNKQGK 383
Query 169 WDPGNLSMDWF 179
DPGNL M WF
Sbjct 384 PDPGNLDMTWF 394
>gi|237654227|ref|YP_002890541.1| peptidoglycan-binding protein [Thauera sp. MZ1T]
gi|237625474|gb|ACR02164.1| Peptidoglycan-binding domain 1 protein [Thauera sp. MZ1T]
Length=274
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/185 (38%), Positives = 90/185 (49%), Gaps = 8/185 (4%)
Query 9 WLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRE----TAKSIARGRPDL 64
WL VLR A G ++ +DGW RG + ++GV+ HHT R + + GR DL
Sbjct 7 WLPVVLRDA-GLKVAEVDGWPNRGRSEMGVVKGVICHHTAGPRSGNMPSLGVLKNGRADL 65
Query 65 PGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSYD 124
GPLA L + G ++A G HAGRG W + N IG+E A T D +
Sbjct 66 AGPLAQLGLGRDGTFYVIAAGRANHAGRGE--WKGITDGNGSFIGIE-AESTGIGDPTKP 122
Query 125 AGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRAEVA 184
E WP+ Q+ + R AA+ LG GHKEYA K DP L M+ FR+EVA
Sbjct 123 GFEPWPEVQLDAYRRGVAAILAHLGQDAGMCCGHKEYALPKGRKSDPHTLDMERFRSEVA 182
Query 185 KDTRG 189
G
Sbjct 183 ALMSG 187
>gi|296270159|ref|YP_003652791.1| N-acetylmuramyl-L-alanine amidase [Thermobispora bispora DSM
43833]
gi|296092946|gb|ADG88898.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC,
AmpD [Thermobispora bispora DSM 43833]
Length=235
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/166 (31%), Positives = 76/166 (46%), Gaps = 17/166 (10%)
Query 27 GWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRPDLPGPLANLHIAHSGVVTIVAVGV 86
GW+ RGHG ++G++ HHT R + GRP L GPL+ + H G + ++A G
Sbjct 23 GWKSRGHGPQPSVQGIVCHHTA-GRNDMHVVRDGRPGLTGPLSQFWLRHDGHIFVIAAGR 81
Query 87 CWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSYDAGERWPDAQIVSMRDVAAALTL 146
CWH + + D + +G+E + E WP Q+ + + + A L
Sbjct 82 CWHNAPSTSNYHRNDTS----LGIE---------AENNGSEPWPAKQVDAYQRLCAELCR 128
Query 147 KLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRAEVAKDTRGEFD 192
R GHKE K DP +++MD FRA V +GE D
Sbjct 129 AFKLPASRVKGHKE---VNTQKPDPHSINMDTFRARVDLLLKGEDD 171
>gi|291300999|ref|YP_003512277.1| N-acetylmuramoyl-L-alanine amidase family 2 [Stackebrandtia nassauensis
DSM 44728]
gi|290570219|gb|ADD43184.1| N-acetylmuramoyl-L-alanine amidase family 2 [Stackebrandtia nassauensis
DSM 44728]
Length=181
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/186 (35%), Positives = 89/186 (48%), Gaps = 21/186 (11%)
Query 9 WLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAK-------SIARGR 61
WL EVLR E + D G+F I GV+WHHT +A+ ++ GR
Sbjct 6 WLVEVLRADGVEVVEEGDWQNHMRPGEFAPI-GVLWHHTAGPPSSAENPAPSLGTVINGR 64
Query 62 PDLPGPLANLHIAHSGVVTIVAVGVCWHAGR--GSYPWLPTDNANWHMIGVECAWPTIRR 119
PDLPGPLA + +GV +++ G HAG+ GS P +P + N M+G E + + +
Sbjct 65 PDLPGPLAQALVDFNGVFHVISAGRSNHAGKSGGSGP-IPAGDGNALMVGWEIDYDGVNQ 123
Query 120 DGSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWF 179
S AQ + AA+ +LG E GHKE + GK DP + +
Sbjct 124 QMS--------PAQYQASLKATAAVLRRLGTDAEHARGHKET--STTGKIDPSFVDLAAM 173
Query 180 RAEVAK 185
RAEVAK
Sbjct 174 RAEVAK 179
>gi|118470469|ref|YP_884944.1| gp236 protein [Mycobacterium smegmatis str. MC2 155]
gi|118171756|gb|ABK72652.1| gp236 protein [Mycobacterium smegmatis str. MC2 155]
Length=179
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/177 (37%), Positives = 92/177 (52%), Gaps = 14/177 (7%)
Query 8 IWLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKSIARGRPDLPGP 67
+WL + LR A G + +DGWR G GDF DI G+M H+T +IA G + PGP
Sbjct 3 VWLADALR-AEGLDVDEIDGWRANGDGDFDDIWGIMCHNTAGDDIATDAIALGTGERPGP 61
Query 68 LANLHIAHSGVVTIVAVGVCWHAGRGSYPWLPTDNANWHMIGVECAWPTIRRDGSYDAGE 127
L+N+ I G V +VA GV HAG G +P LP D+ + IG+ +RR +
Sbjct 62 LSNVLIRRDGTVAVVAAGVAHHAGPGYHPDLPRDDVDTRTIGIH---AEMRR------RQ 112
Query 128 RWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRAEVA 184
++P Q +S AA+ + +GH+E+ GK DP LSMD RA++
Sbjct 113 KYPREQYLSYVRCCAAILRHINRSASHVLGHQEW---DTGKVDPC-LSMDQLRADIV 165
>gi|311743650|ref|ZP_07717456.1| gp35 protein [Aeromicrobium marinum DSM 15272]
gi|311312780|gb|EFQ82691.1| gp35 protein [Aeromicrobium marinum DSM 15272]
Length=280
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/271 (30%), Positives = 117/271 (44%), Gaps = 47/271 (17%)
Query 22 LRVLD--GWRERGH----GDFRDIRGVMWHHTGNSRETAKS-----IARGRPDLPGPLAN 70
LRV++ GW+ RG G F + GV+ HHT R T+ + G DLPGPL+
Sbjct 14 LRVVESPGWKTRGRPASTGQFTPM-GVLNHHTATGRGTSDQATTSLLINGHKDLPGPLSQ 72
Query 71 LHIAHSGVVTIVAVGVCWHAG-RGSYPWLPTDNANWHMIGVECAWPTIRRDGSYDAG-ER 128
L + V ++A G C HAG ++ +P + N +G+E +++G E
Sbjct 73 LGFSRDRTVHVIAAGRCNHAGPSRAFAGVPGGDGNRWWLGIEV----------FNSGYEG 122
Query 129 WPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGN----LSMDWFRAEVA 184
WPD + + + AAL G+ R H E + GKWDPG + M+ FRA VA
Sbjct 123 WPDDVMDGLHALNAALLDHYGWPRSRVAAHGEIS--TSGKWDPGVNGRLIDMNAFRAAVA 180
Query 185 KDTRGEFDHPLTPPPAVIARPPIL------PKPRNPRDDRILLEEVW-----------DQ 227
T+G+ D T I R + +P D L +W DQ
Sbjct 181 GVTQGDDDMQNTEEQYEIFRHFLARALRYDVRPLGAGADWKLGPTLWERLAQLEGNLGDQ 240
Query 228 LRGIEGRGWPVLGDKTIVDYLAELGNKVDAL 258
+ GIEG + + + +L KV AL
Sbjct 241 ITGIEGADVEEIAQQVVESLDDDLAEKVLAL 271
>gi|239987764|ref|ZP_04708428.1| hypothetical protein SrosN1_10698 [Streptomyces roseosporus NRRL
11379]
Length=291
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/224 (33%), Positives = 96/224 (43%), Gaps = 33/224 (14%)
Query 4 IGDPIWLEEVLRPALGERLRVLD--GWR--ERGH-GDFRDIRGVMWHHTGNSRETAKSIA 58
+ P+ +++L+ E L V++ WR R H G + GVM HHT S TA S+
Sbjct 1 MATPLSADKLLKALRDEGLHVVEHRSWRTNNRNHKGPWGPTHGVMIHHTVTS-GTASSVE 59
Query 59 ---RGRPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRG---------SYPWLPTDN---- 102
G LPGPL + IA G V +V G HAG G + LP DN
Sbjct 60 LCYNGHSALPGPLCHGVIAKDGTVHLVGNGRANHAGLGDDDVLRAVIAEKALPPDNEANT 119
Query 103 -ANWHMIGVECAWPTIRRDGSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEY 161
N H G EC D + WP AQ++++ AAA+ G+ IGH E+
Sbjct 120 DGNRHFYGFECV-------NLGDGKDPWPAAQLLAIERAAAAVCRAHGWSQRSVIGHLEW 172
Query 162 AGAAQGKWDPGNLSMDWFRAEVAKDTRGEFDHPLTPPPAVIARP 205
GK DP +M+ R + K G D P PPP P
Sbjct 173 ---QPGKVDPRGFTMNSMRTRIGKRLGGAPDGPSKPPPKPTYEP 213
>gi|318057406|ref|ZP_07976129.1| hypothetical protein SSA3_05668 [Streptomyces sp. SA3_actG]
gi|318076547|ref|ZP_07983879.1| hypothetical protein SSA3_07452 [Streptomyces sp. SA3_actF]
Length=278
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/232 (31%), Positives = 93/232 (41%), Gaps = 41/232 (17%)
Query 17 ALGERLRVLDGWRER---GHGDFRDIRGVMWHHT--GNSRETAKSIARGRPDLPGPLANL 71
A G + V GW GHG + + GVM HHT G+ + + GR DLPGPL +
Sbjct 16 AEGLTVAVRSGWSTHNRAGHGAWGPLNGVMIHHTASGDGQGIVDVCSAGRSDLPGPLCHG 75
Query 72 HIAHSGVVTIVAVGVCWHAGRGSY---------------PWLPTDNANWHMIGVECAWPT 116
I G VT+V G HAG G P T + N IG EC
Sbjct 76 VIHKDGTVTLVGWGRANHAGTGDSRALAAVIAESSTHPKPGAGTIDGNARFIGFEC---- 131
Query 117 IRRDGSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSM 176
+ R D + WP+AQ+ ++ +AA+ G+G IGH E+ K DP SM
Sbjct 132 VNRG---DGKDPWPEAQLDAIERASAAVCRFYGWGEHSVIGHLEW---TNQKIDPRGFSM 185
Query 177 DWFRAEVAKDTRGEFDHPLTPPPAVIARPPILPKPRNPRDDR--ILLEEVWD 226
R +A G PA P P P + ++VWD
Sbjct 186 GSMRTRIAARLAG---------PASAKPPKTTPSKETPVAAKKPQTYKDVWD 228
>gi|302867079|ref|YP_003835716.1| N-acetylmuramoyl-L-alanine amidase family 2 protein [Micromonospora
aurantiaca ATCC 27029]
gi|302569938|gb|ADL46140.1| N-acetylmuramoyl-L-alanine amidase family 2 [Micromonospora aurantiaca
ATCC 27029]
Length=321
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/189 (32%), Positives = 84/189 (45%), Gaps = 20/189 (10%)
Query 9 WLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKS------IARGRP 62
WL +VLR A G ++ V W R D GV+WHHT + GR
Sbjct 6 WLVDVLRGA-GVQVVVEGDWLNRMRSGSFDPLGVLWHHTAATSSATNPHPALNICINGRS 64
Query 63 DLPGPLANLHIAHSGVVTIVAVGVCWHAGR--GSYPWLPTDNANWHMIGVECAWPTIRRD 120
DLPGPL + + GV +++ G C HAG GS P +P + N MIG E + +
Sbjct 65 DLPGPLCQALVDYHGVFHVISAGRCNHAGTSGGSGP-IPAGDGNTLMIGWEIDYNGVD-- 121
Query 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
+R AQ + AA+ +LG GH+E + GK DP + ++ R
Sbjct 122 ------QRMTTAQYNASIAATAAVLKRLGRDSSYARGHRET--STTGKIDPSFIDLNTMR 173
Query 181 AEVAKDTRG 189
A+VA G
Sbjct 174 ADVAAKMAG 182
>gi|345007886|ref|YP_004800431.1| N-acetylmuramoyl-L-alanine amidase family protein [Streptomyces
violaceusniger Tu 4113]
gi|344043225|gb|AEM88948.1| N-acetylmuramoyl-L-alanine amidase family 2 [Streptomyces violaceusniger
Tu 4113]
Length=229
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/162 (36%), Positives = 74/162 (46%), Gaps = 28/162 (17%)
Query 41 GVMWHHTGNSRETAKSIA---RGRPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRGSYPW 97
GVM HHT SR T S++ GR DLPGPL + IA G V ++ G HAG G
Sbjct 75 GVMIHHTA-SRGTDGSVSLCRYGRSDLPGPLCHGVIAKDGTVYLIGYGRANHAGLGDSAV 133
Query 98 LPTDNANWHM--------------IGVECAWPTIRRDGSYDAGERWPDAQIVSMRDVAAA 143
L AN M G EC +D WP AQ+ ++ V+AA
Sbjct 134 LGAVKANRKMPAPRKWDTDGNRYFFGFECVNVGTGKD-------PWPKAQMDAIVRVSAA 186
Query 144 LTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFRAEVAK 185
+ +G R IGHKE+ +GK DP SMD R+ + K
Sbjct 187 ICRSKEWGANRVIGHKEW---QKGKVDPKGFSMDTLRSRINK 225
>gi|315506511|ref|YP_004085398.1| n-acetylmuramoyl-l-alanine amidase family 2 [Micromonospora sp.
L5]
gi|315413130|gb|ADU11247.1| N-acetylmuramoyl-L-alanine amidase family 2 [Micromonospora sp.
L5]
Length=321
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/189 (32%), Positives = 84/189 (45%), Gaps = 20/189 (10%)
Query 9 WLEEVLRPALGERLRVLDGWRERGHGDFRDIRGVMWHHTGNSRETAKS------IARGRP 62
WL +VLR A G ++ V W R D GV+WHHT + GR
Sbjct 6 WLVDVLRGA-GVQVVVEGDWLNRMRSGSFDPIGVLWHHTAATSSATNPHPALNICINGRS 64
Query 63 DLPGPLANLHIAHSGVVTIVAVGVCWHAGR--GSYPWLPTDNANWHMIGVECAWPTIRRD 120
DLPGPL + + GV +++ G C HAG GS P +P + N MIG E + +
Sbjct 65 DLPGPLCQALVDYHGVFHVISAGRCNHAGTSGGSGP-IPAGDGNTLMIGWEIDYNGVD-- 121
Query 121 GSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDWFR 180
+R AQ + AA+ +LG GH+E + GK DP + ++ R
Sbjct 122 ------QRMTTAQYNASIAATAAVLKRLGRDSSYARGHRET--STTGKIDPSFIDLNTMR 173
Query 181 AEVAKDTRG 189
A+VA G
Sbjct 174 ADVAAKMAG 182
>gi|284030842|ref|YP_003380773.1| N-acetylmuramoyl-L-alanine amidase family 2 [Kribbella flavida
DSM 17836]
gi|283810135|gb|ADB31974.1| N-acetylmuramoyl-L-alanine amidase family 2 [Kribbella flavida
DSM 17836]
Length=269
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/201 (32%), Positives = 95/201 (48%), Gaps = 29/201 (14%)
Query 9 WLEEVLRPALGERLRVLDGWRERG-HGDFRDIRGVMWHHTGNSRETAKS-------IARG 60
WL +VLR A G ++ W R G F I GV+WHHT +S + + + G
Sbjct 6 WLADVLRAA-GVQVIEEGNWLGRAVAGSFNPI-GVLWHHTASSTSSPSNPHPALNVVING 63
Query 61 RPDLPGPLANLHIAHSGVVTIVAVGVCWHAG--RGSYPWLPTDNANWHMIGVECAWPTIR 118
R DL GPL+ + ++GV +++ G C HAG R S P +P + N +IG E + +
Sbjct 64 RSDLQGPLSQALVDYNGVFHVISAGRCNHAGAARVSGP-IPAGDGNTMLIGWEIDYNGVS 122
Query 119 RDGSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKEYAGAAQGKWDPGNLSMDW 178
++ AQ + AA+ +LG GH+E + GK DP +++D
Sbjct 123 --------QQMSPAQYSASLKATAAVLRRLGRDASYVRGHRET--STTGKIDPYAVNLDS 172
Query 179 FRAEVAKDTRGEFDHPLTPPP 199
RAEVA G +PPP
Sbjct 173 MRAEVASLLGG------SPPP 187
>gi|345014884|ref|YP_004817238.1| N-acetylmuramoyl-L-alanine amidase family protein [Streptomyces
violaceusniger Tu 4113]
gi|344041233|gb|AEM86958.1| N-acetylmuramoyl-L-alanine amidase family 2 [Streptomyces violaceusniger
Tu 4113]
Length=391
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/208 (35%), Positives = 94/208 (46%), Gaps = 35/208 (16%)
Query 4 IGDPIWLEEVLRPALGERLRVLD--GWRERG---HGDFRDIRGVMWHHTGN---SRETAK 55
+ P+ ++ L G L V++ WR HG++ GVM HHTG+ ++ +
Sbjct 1 MATPLSADKFLSVLKGAGLGVVEHGKWRTHNRNTHGNWGPANGVMIHHTGSYSSEKDMVE 60
Query 56 SIARGRPDLPGPLANLHIAHSGVVTIVAVGVCWHAGRG----------SYPWLPTDN--- 102
G DLPGPL + I SG V +V G C HAG G LP +N
Sbjct 61 LYRTGYHDLPGPLCHGVIDRSGTVHLVGYGRCNHAGMGDTDVLLAVIAEKTSLPRNNEAD 120
Query 103 --ANWHMIGVECAWPTIRRDGSYDAGERWPDAQIVSMRDVAAALTLKLGYGPERNIGHKE 160
N H G EC GS + WP AQ+ +M AAA+ G+ IGHKE
Sbjct 121 TDGNRHFYGFECI-----NTGS----QPWPVAQLDAMARAAAAICRAHGWNEHSVIGHKE 171
Query 161 YAGAAQGKWDPGNLSMDWFRAEVAKDTR 188
+ GK DPG + MD FRA VA+ R
Sbjct 172 W---RPGKPDPGGIDMDAFRARVARHLR 196
Lambda K H
0.319 0.140 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 432410969436
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40