BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3597c
Length=112
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610733|ref|NP_218114.1| iron-regulated LSR2 protein precurs... 221 2e-56
gi|240172841|ref|ZP_04751500.1| Lsr2 [Mycobacterium kansasii ATC... 175 2e-42
gi|108801720|ref|YP_641917.1| DNA-bridging protein Lsr2 [Mycobac... 175 2e-42
gi|342862443|ref|ZP_08719083.1| Lsr2 [Mycobacterium colombiense ... 174 5e-42
gi|254823224|ref|ZP_05228225.1| Lsr2 [Mycobacterium intracellula... 174 5e-42
gi|118474025|ref|YP_890314.1| Lsr2 protein [Mycobacterium smegma... 173 6e-42
gi|41406558|ref|NP_959394.1| Lsr2 [Mycobacterium avium subsp. pa... 172 1e-41
gi|15827031|ref|NP_301294.1| lsr2 protein (15 kDa antigen) [Myco... 171 3e-41
gi|315446239|ref|YP_004079118.1| hypothetical protein Mspyr1_474... 170 5e-41
gi|145222021|ref|YP_001132699.1| DNA-bridging protein Lsr2 [Myco... 168 2e-40
gi|118619354|ref|YP_907686.1| iron-regulated Lsr2 protein precur... 167 3e-40
gi|118464834|ref|YP_879835.1| Lsr2 protein [Mycobacterium avium ... 163 1e-38
gi|120406307|ref|YP_956136.1| Lsr2 [Mycobacterium vanbaalenii PY... 161 3e-38
gi|333992527|ref|YP_004525141.1| iron-regulated Lsr2 protein pre... 154 3e-36
gi|54022376|ref|YP_116618.1| putative LSR2 protein [Nocardia far... 150 8e-35
gi|333918013|ref|YP_004491594.1| LSR2-like protein [Amycolicicoc... 147 4e-34
gi|111021393|ref|YP_704365.1| LSR2 protein precursor [Rhodococcu... 145 2e-33
gi|169627649|ref|YP_001701298.1| protein lsr2 [Mycobacterium abs... 144 4e-33
gi|226363747|ref|YP_002781529.1| LSR2-like protein [Rhodococcus ... 144 4e-33
gi|296138308|ref|YP_003645551.1| Lsr2 protein [Tsukamurella paur... 139 1e-31
gi|312138066|ref|YP_004005402.1| lysyl-tRNA synthetase [Rhodococ... 135 1e-30
gi|134097023|ref|YP_001102684.1| iron-regulated LSR2 protein pre... 135 3e-30
gi|300790537|ref|YP_003770828.1| hypothetical protein AMED_8733 ... 133 9e-30
gi|296392866|ref|YP_003657750.1| Lsr2 [Segniliparus rotundus DSM... 132 2e-29
gi|257057503|ref|YP_003135335.1| hypothetical protein Svir_35520... 130 4e-29
gi|54024283|ref|YP_118525.1| putative LSR2 protein [Nocardia far... 130 5e-29
gi|1333780|emb|CAA37572.1| LSR2 [Mycobacterium leprae] 128 2e-28
gi|317507815|ref|ZP_07965516.1| hypothetical protein HMPREF9336_... 127 5e-28
gi|302530770|ref|ZP_07283112.1| iron-regulated LSR2 protein [Str... 127 7e-28
gi|256374485|ref|YP_003098145.1| hypothetical protein Amir_0330 ... 126 1e-27
gi|296137986|ref|YP_003645229.1| protein lsr2 [Tsukamurella paur... 124 5e-27
gi|134097861|ref|YP_001103522.1| putative lysyl tRNA synthetase-... 122 2e-26
gi|258651100|ref|YP_003200256.1| hypothetical protein Namu_0856 ... 120 9e-26
gi|317508167|ref|ZP_07965850.1| Lsr2 protein [Segniliparus rugos... 119 2e-25
gi|331697771|ref|YP_004334010.1| hypothetical protein Psed_3991 ... 118 3e-25
gi|54024385|ref|YP_118627.1| putative LSR2 protein [Nocardia far... 117 4e-25
gi|345000384|ref|YP_004803238.1| putative Lsr2-like protein [Str... 117 6e-25
gi|284034302|ref|YP_003384233.1| hypothetical protein Kfla_6437 ... 116 1e-24
gi|320010063|gb|ADW04913.1| putative Lsr2-like protein [Streptom... 116 1e-24
gi|336179416|ref|YP_004584791.1| putative lysyl tRNA synthetase-... 116 1e-24
gi|332669097|ref|YP_004452105.1| hypothetical protein Celf_0578 ... 114 4e-24
gi|302529640|ref|ZP_07281982.1| iron-regulated LSR2 protein [Str... 114 4e-24
gi|239988662|ref|ZP_04709326.1| putative Lsr2-like protein [Stre... 114 5e-24
gi|182437909|ref|YP_001825628.1| putative Lsr2-like protein [Str... 114 7e-24
gi|300783632|ref|YP_003763923.1| lysyl tRNA synthetase-like prot... 113 9e-24
gi|284989233|ref|YP_003407787.1| protein lsr2 [Geodermatophilus ... 113 1e-23
gi|302553196|ref|ZP_07305538.1| conserved hypothetical protein [... 113 1e-23
gi|84497264|ref|ZP_00996086.1| putative Lsr2-like protein [Janib... 112 2e-23
gi|329939476|ref|ZP_08288812.1| Lsr2-like protein [Streptomyces ... 112 2e-23
gi|302559273|ref|ZP_07311615.1| Lsr2 protein [Streptomyces grise... 111 3e-23
>gi|15610733|ref|NP_218114.1| iron-regulated LSR2 protein precursor [Mycobacterium tuberculosis
H37Rv]
gi|15843210|ref|NP_338247.1| lsr2 protein [Mycobacterium tuberculosis CDC1551]
gi|31794774|ref|NP_857267.1| LSR2 protein precursor [Mycobacterium bovis AF2122/97]
76 more sequence titles
Length=112
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG
Sbjct 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT
Sbjct 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
>gi|240172841|ref|ZP_04751500.1| Lsr2 [Mycobacterium kansasii ATCC 12478]
Length=112
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/112 (97%), Positives = 110/112 (99%), Gaps = 0/112 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLS+KNA KLRGDLKQWV AGRRVGG
Sbjct 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSSKNAAKLRGDLKQWVEAGRRVGG 60
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDA+HAAT
Sbjct 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAFHAAT 112
>gi|108801720|ref|YP_641917.1| DNA-bridging protein Lsr2 [Mycobacterium sp. MCS]
gi|119870871|ref|YP_940823.1| DNA-bridging protein Lsr2 [Mycobacterium sp. KMS]
gi|126437707|ref|YP_001073398.1| DNA-bridging protein Lsr2 [Mycobacterium sp. JLS]
gi|108772139|gb|ABG10861.1| Lsr2 [Mycobacterium sp. MCS]
gi|119696960|gb|ABL94033.1| Lsr2 [Mycobacterium sp. KMS]
gi|126237507|gb|ABO00908.1| Lsr2 [Mycobacterium sp. JLS]
Length=113
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/113 (90%), Positives = 105/113 (93%), Gaps = 1/113 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVTLVDDFDG G ADETVEFGLDGV+YEIDLS+KNA KLR DLKQWV AGRRVGG
Sbjct 1 MAKKVTVTLVDDFDGEGTADETVEFGLDGVSYEIDLSSKNAKKLREDLKQWVEAGRRVGG 60
Query 61 RRRGR-SGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
RRRGR +G RGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDA+HAAT
Sbjct 61 RRRGRATGPTRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAFHAAT 113
>gi|342862443|ref|ZP_08719083.1| Lsr2 [Mycobacterium colombiense CECT 3035]
gi|342130114|gb|EGT83448.1| Lsr2 [Mycobacterium colombiense CECT 3035]
Length=112
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/112 (95%), Positives = 110/112 (99%), Gaps = 0/112 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVTLVDDFDG+GAADETVEFGLDGVTYEIDLS+KNA KLRGDLKQWV AGRRVGG
Sbjct 1 MAKKVTVTLVDDFDGAGAADETVEFGLDGVTYEIDLSSKNAAKLRGDLKQWVEAGRRVGG 60
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
RRRGRSG+GRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDA+HAAT
Sbjct 61 RRRGRSGTGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAFHAAT 112
>gi|254823224|ref|ZP_05228225.1| Lsr2 [Mycobacterium intracellulare ATCC 13950]
Length=112
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/112 (96%), Positives = 110/112 (99%), Gaps = 0/112 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVTLVDDFDG+GAADETVEFGLDGVTYEIDLS+KNA KLRGDLKQWV AGRRVGG
Sbjct 1 MAKKVTVTLVDDFDGAGAADETVEFGLDGVTYEIDLSSKNAAKLRGDLKQWVEAGRRVGG 60
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDA+HAAT
Sbjct 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAFHAAT 112
>gi|118474025|ref|YP_890314.1| Lsr2 protein [Mycobacterium smegmatis str. MC2 155]
gi|118175312|gb|ABK76208.1| Lsr2 protein [Mycobacterium smegmatis str. MC2 155]
Length=114
Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 99/114 (87%), Positives = 103/114 (91%), Gaps = 2/114 (1%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVTLVDDFDG ADETVEFGLDGVTYEIDLS KNA KLR DLKQWV AGRRVGG
Sbjct 1 MAKKVTVTLVDDFDGEATADETVEFGLDGVTYEIDLSAKNAAKLRNDLKQWVEAGRRVGG 60
Query 61 RRRGRSG--SGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
R+RGR+ + RGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDA+HAAT
Sbjct 61 RKRGRAATTTTRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAFHAAT 114
>gi|41406558|ref|NP_959394.1| Lsr2 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|296166662|ref|ZP_06849088.1| Lsr protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|41394907|gb|AAS02777.1| Lsr2 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|295897997|gb|EFG77577.1| Lsr protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|336458509|gb|EGO37481.1| Lsr2 [Mycobacterium avium subsp. paratuberculosis S397]
Length=112
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/112 (95%), Positives = 109/112 (98%), Gaps = 0/112 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVTLVDDFDG+GAADETVEFGLDGVTYEIDLS+KNA KLR DLKQWV AGRRVGG
Sbjct 1 MAKKVTVTLVDDFDGAGAADETVEFGLDGVTYEIDLSSKNAAKLRNDLKQWVEAGRRVGG 60
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDA+HAAT
Sbjct 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAFHAAT 112
>gi|15827031|ref|NP_301294.1| lsr2 protein (15 kDa antigen) [Mycobacterium leprae TN]
gi|221229509|ref|YP_002502925.1| lsr2 protein (15 kDa antigen) [Mycobacterium leprae Br4923]
gi|1170838|sp|P24094.2|LSR2_MYCLE RecName: Full=Protein lsr2; AltName: Full=15 kDa antigen; AltName:
Full=A15; Flags: Precursor
gi|149917|gb|AAA25351.1| antigen 15 kDa [Mycobacterium leprae]
gi|13092578|emb|CAC29742.1| lsr2 protein (15 kDa antigen) [Mycobacterium leprae]
gi|219932616|emb|CAR70327.1| lsr2 protein (15 kDa antigen) [Mycobacterium leprae Br4923]
Length=112
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/112 (93%), Positives = 109/112 (98%), Gaps = 0/112 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVTLVDDFDG+GAADETVEFGLDGVTYEIDL+ KNA KLRGDL+QWV+AGRRVGG
Sbjct 1 MAKKVTVTLVDDFDGAGAADETVEFGLDGVTYEIDLTNKNAAKLRGDLRQWVSAGRRVGG 60
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
RRRGRS SGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDA+HAAT
Sbjct 61 RRRGRSNSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAFHAAT 112
>gi|315446239|ref|YP_004079118.1| hypothetical protein Mspyr1_47420 [Mycobacterium sp. Spyr1]
gi|315264542|gb|ADU01284.1| hypothetical protein Mspyr1_47420 [Mycobacterium sp. Spyr1]
Length=114
Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/114 (80%), Positives = 95/114 (84%), Gaps = 2/114 (1%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWV--AAGRRV 58
MAKKVTVTLVDDFDG G ADETVEFGLDGV+YEIDLS KNA KLR DLKQWV
Sbjct 1 MAKKVTVTLVDDFDGEGGADETVEFGLDGVSYEIDLSAKNAAKLRNDLKQWVEAGRRVGG 60
Query 59 GGRRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
R R +G+GRGR AIDREQSAAIREWARRNGHNVSTRGRIPADVIDA+HAAT
Sbjct 61 RRRGRAVAGTGRGRAAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAFHAAT 114
>gi|145222021|ref|YP_001132699.1| DNA-bridging protein Lsr2 [Mycobacterium gilvum PYR-GCK]
gi|145214507|gb|ABP43911.1| Lsr2 [Mycobacterium gilvum PYR-GCK]
Length=114
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/114 (79%), Positives = 94/114 (83%), Gaps = 2/114 (1%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWV--AAGRRV 58
MAKKVTVTLVDDFDG G ADETVEFGLDGV+YEIDLS KNA KLR DLKQWV
Sbjct 1 MAKKVTVTLVDDFDGEGGADETVEFGLDGVSYEIDLSAKNAAKLRNDLKQWVEAGRRVGG 60
Query 59 GGRRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
R R +G+GRGR AIDREQSAAIREWARRNGHNVS RGRIPADVIDA+HAAT
Sbjct 61 RRRGRAVAGTGRGRAAIDREQSAAIREWARRNGHNVSARGRIPADVIDAFHAAT 114
>gi|118619354|ref|YP_907686.1| iron-regulated Lsr2 protein precursor [Mycobacterium ulcerans
Agy99]
gi|183985069|ref|YP_001853360.1| iron-regulated Lsr2 protein precursor [Mycobacterium marinum
M]
gi|118571464|gb|ABL06215.1| iron-regulated Lsr2 protein precursor [Mycobacterium ulcerans
Agy99]
gi|183178395|gb|ACC43505.1| iron-regulated Lsr2 protein precursor [Mycobacterium marinum
M]
Length=113
Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/111 (97%), Positives = 110/111 (99%), Gaps = 0/111 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVTLVDDFDG+GAADETVEFGLDGVTYEIDLS+KNA KLRGDLKQWVAAGRRVGG
Sbjct 1 MAKKVTVTLVDDFDGAGAADETVEFGLDGVTYEIDLSSKNAAKLRGDLKQWVAAGRRVGG 60
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDA+HAA
Sbjct 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAFHAA 111
>gi|118464834|ref|YP_879835.1| Lsr2 protein [Mycobacterium avium 104]
gi|118166121|gb|ABK67018.1| Lsr2 protein [Mycobacterium avium 104]
Length=108
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/108 (94%), Positives = 105/108 (98%), Gaps = 0/108 (0%)
Query 5 VTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGGRRRG 64
+TVTLVDDFDG+GAADETVEFGLDGVTYEIDLS+KNA KLR DLKQWV AGRRVGGRRRG
Sbjct 1 MTVTLVDDFDGAGAADETVEFGLDGVTYEIDLSSKNAAKLRNDLKQWVEAGRRVGGRRRG 60
Query 65 RSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
RSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDA+HAAT
Sbjct 61 RSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAFHAAT 108
>gi|120406307|ref|YP_956136.1| Lsr2 [Mycobacterium vanbaalenii PYR-1]
gi|119959125|gb|ABM16130.1| Lsr2 [Mycobacterium vanbaalenii PYR-1]
Length=135
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/113 (84%), Positives = 98/113 (87%), Gaps = 1/113 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWV-AAGRRVG 59
MAKKVTVTLVDDFDG GAADETVEFGLDGV+YEIDLS KNA KLR DLKQWV A R G
Sbjct 23 MAKKVTVTLVDDFDGEGAADETVEFGLDGVSYEIDLSAKNAAKLRTDLKQWVEAGRRVGG 82
Query 60 GRRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
RR G+GRGR AIDREQSAAIR+WARRNGHNVSTRGRIPADVIDA+HAAT
Sbjct 83 RRRGRAVGNGRGRAAIDREQSAAIRDWARRNGHNVSTRGRIPADVIDAFHAAT 135
>gi|333992527|ref|YP_004525141.1| iron-regulated Lsr2 protein precursor [Mycobacterium sp. JDM601]
gi|333488495|gb|AEF37887.1| iron-regulated Lsr2 protein precursor [Mycobacterium sp. JDM601]
Length=107
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/108 (81%), Positives = 92/108 (86%), Gaps = 1/108 (0%)
Query 5 VTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGGRRRG 64
+TVTL+DDFDG GAADETVEFGLDGVTYEIDLSTKNATKLR DLK+W A R G RR
Sbjct 1 MTVTLIDDFDGEGAADETVEFGLDGVTYEIDLSTKNATKLRSDLKKW-ADAGRRVGGRRR 59
Query 65 RSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
G RGAIDREQSAAIREWARRNGHNVSTRGRIPAD+IDA+HAAT
Sbjct 60 GRAGGARRGAIDREQSAAIREWARRNGHNVSTRGRIPADIIDAFHAAT 107
>gi|54022376|ref|YP_116618.1| putative LSR2 protein [Nocardia farcinica IFM 10152]
gi|54013884|dbj|BAD55254.1| putative LSR2 protein [Nocardia farcinica IFM 10152]
Length=120
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/117 (65%), Positives = 88/117 (76%), Gaps = 6/117 (5%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTV+L+DD DG ADET+EF +DGV+YEIDLS NA KLR L+QWV+ RRV G
Sbjct 1 MAKKVTVSLIDDVDGESIADETIEFAIDGVSYEIDLSAANAAKLRDGLEQWVSNARRVSG 60
Query 61 RRR------GRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
RRR G S + + R +IDREQSAAIREWARRNGH VS RGRI AD+ +AY+ A
Sbjct 61 RRRAKAATTGASATPKSRVSIDREQSAAIREWARRNGHKVSARGRISADITEAYNKA 117
>gi|333918013|ref|YP_004491594.1| LSR2-like protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333480234|gb|AEF38794.1| LSR2-like protein [Amycolicicoccus subflavus DQS3-9A1]
Length=114
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/113 (64%), Positives = 88/113 (78%), Gaps = 2/113 (1%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KVTVTL+DD D ADETVEFGLDGVTYEIDLS++NA KLR +++ WVA RR+ G
Sbjct 1 MAQKVTVTLIDDLDQDAPADETVEFGLDGVTYEIDLSSENAAKLRSEMEVWVAHARRLAG 60
Query 61 R--RRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
R RR +G R R +DREQSAAIREWAR+NG+ VS RGRI A++ +AY+ A
Sbjct 61 RKTRRTATGGARPRATLDREQSAAIREWARKNGYKVSARGRISAEITEAYNKA 113
>gi|111021393|ref|YP_704365.1| LSR2 protein precursor [Rhodococcus jostii RHA1]
gi|110820923|gb|ABG96207.1| possible LSR2 protein precursor [Rhodococcus jostii RHA1]
Length=116
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/116 (61%), Positives = 87/116 (75%), Gaps = 4/116 (3%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVTL+DD D +ADETVEFGLDGV YEIDLS++NA KLR L WV+ R+V
Sbjct 1 MAKKVTVTLIDDVDQEASADETVEFGLDGVQYEIDLSSENAAKLREQLDVWVSHARKVSS 60
Query 61 RRRGRS----GSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
R+RG++ + + R ++DREQSAAIREWAR+N VS RGRI A++IDAY+ A
Sbjct 61 RKRGKAVAAPAATKSRVSVDREQSAAIREWARKNNKKVSARGRISAEIIDAYNKAN 116
>gi|169627649|ref|YP_001701298.1| protein lsr2 [Mycobacterium abscessus ATCC 19977]
gi|169239616|emb|CAM60644.1| Protein lsr2 precursor [Mycobacterium abscessus]
Length=114
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/113 (74%), Positives = 92/113 (82%), Gaps = 2/113 (1%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWV--AAGRRV 58
MAKKVTVTLVDD DG ADETVEFG+DGVTYEIDLS+KNA KLR L WV A
Sbjct 1 MAKKVTVTLVDDVDGEAPADETVEFGVDGVTYEIDLSSKNAEKLRNQLSTWVEHARRVSG 60
Query 59 GGRRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
R RG SGSGRGR +IDREQSAAIREWAR+NGHNVS+RGRIPA+V+DA++AA
Sbjct 61 RRRGRGSSGSGRGRASIDREQSAAIREWARKNGHNVSSRGRIPAEVVDAFNAA 113
>gi|226363747|ref|YP_002781529.1| LSR2-like protein [Rhodococcus opacus B4]
gi|226242236|dbj|BAH52584.1| LSR2-like protein [Rhodococcus opacus B4]
Length=116
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/116 (61%), Positives = 87/116 (75%), Gaps = 4/116 (3%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVTL+DD D +ADETVEFGLDGV YEIDLS++NA KLR L WV+ R+V
Sbjct 1 MAKKVTVTLIDDVDQEASADETVEFGLDGVQYEIDLSSENAAKLRDQLDVWVSHARKVSS 60
Query 61 RRRGRSGSG----RGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
R+RG++ + + R A+DREQSAAIREWAR+N VS RGRI A++I+AY+ A
Sbjct 61 RKRGKAVAAPAVTKSRVAVDREQSAAIREWARKNNKKVSARGRISAEIIEAYNKAN 116
>gi|296138308|ref|YP_003645551.1| Lsr2 protein [Tsukamurella paurometabola DSM 20162]
gi|296026442|gb|ADG77212.1| Lsr2 protein [Tsukamurella paurometabola DSM 20162]
Length=114
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/113 (68%), Positives = 86/113 (77%), Gaps = 2/113 (1%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KVTVTLVDD D + ADETVEFGLDGVTYEIDLS KNA +LR L W+A+ RR GG
Sbjct 1 MARKVTVTLVDDVDDTQTADETVEFGLDGVTYEIDLSAKNAAQLRESLDTWIASARRSGG 60
Query 61 RRRG-RSGSG-RGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
R+RG R+ S RGR IDR QSAAIR+WAR G V+ RGRI DVIDAY+ A
Sbjct 61 RKRGARAASAPRGRTPIDRSQSAAIRDWARGAGLKVNDRGRISQDVIDAYNEA 113
>gi|312138066|ref|YP_004005402.1| lysyl-tRNA synthetase [Rhodococcus equi 103S]
gi|325675033|ref|ZP_08154720.1| iron-regulated lsr2 protein [Rhodococcus equi ATCC 33707]
gi|311887405|emb|CBH46717.1| putative lysyl-tRNA synthetase-like protein [Rhodococcus equi
103S]
gi|325554619|gb|EGD24294.1| iron-regulated lsr2 protein [Rhodococcus equi ATCC 33707]
Length=117
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/116 (62%), Positives = 86/116 (75%), Gaps = 5/116 (4%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVTL+DD D + ADETVEFGLDGV YEIDLS+ NA KLR L+ WV+ R+V
Sbjct 1 MAKKVTVTLIDDVDQNATADETVEFGLDGVLYEIDLSSDNAAKLREQLEVWVSHARKVTK 60
Query 61 RRRG-----RSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
RRG +G+ R ++DREQSAAIREWARRNG VS+RGRI A++ +AY+ A
Sbjct 61 SRRGGKSSAAAGATSSRPSVDREQSAAIREWARRNGFTVSSRGRISAEITEAYNKA 116
>gi|134097023|ref|YP_001102684.1| iron-regulated LSR2 protein precursor [Saccharopolyspora erythraea
NRRL 2338]
gi|291006231|ref|ZP_06564204.1| iron-regulated LSR2 protein precursor [Saccharopolyspora erythraea
NRRL 2338]
gi|133909646|emb|CAL99758.1| probable iron-regulated LSR2 protein precursor [Saccharopolyspora
erythraea NRRL 2338]
Length=116
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/117 (62%), Positives = 87/117 (75%), Gaps = 6/117 (5%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KVTVTLVDD DG G ADETVEF LDGV+Y+IDLS NAT+LR L +V++ RR GG
Sbjct 1 MAQKVTVTLVDDLDG-GQADETVEFALDGVSYQIDLSNDNATELRDALANYVSSARRAGG 59
Query 61 RRR--GRSGSGRGRG---AIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
R++ R G+GR G + DREQ+ AIREWAR+ G VS RGRIPADV++ YH A
Sbjct 60 RKKPGPRPGAGRSAGGSTSADREQNQAIREWARKRGLKVSDRGRIPADVVEQYHKAN 116
>gi|300790537|ref|YP_003770828.1| hypothetical protein AMED_8733 [Amycolatopsis mediterranei U32]
gi|299800051|gb|ADJ50426.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340532224|gb|AEK47429.1| hypothetical protein RAM_44810 [Amycolatopsis mediterranei S699]
Length=116
Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/114 (60%), Positives = 88/114 (78%), Gaps = 6/114 (5%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V+LVDD DGS A+ETVEFGLDGV+Y+IDLS++NA +LR L Q+V RR GG
Sbjct 1 MAQKVLVSLVDDLDGS-EAEETVEFGLDGVSYQIDLSSENAEELRDALAQYVEHARRAGG 59
Query 61 RRRG--RSGSGRGR---GAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYH 109
R+R R +G+G A+DREQ+ AIR WAR+NG+ VS RGRIP++V++AYH
Sbjct 60 RKRATVRPVAGKGSARPAAVDREQNQAIRSWARKNGYAVSDRGRIPSEVVEAYH 113
>gi|296392866|ref|YP_003657750.1| Lsr2 [Segniliparus rotundus DSM 44985]
gi|296180013|gb|ADG96919.1| Lsr2 [Segniliparus rotundus DSM 44985]
Length=113
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/110 (57%), Positives = 78/110 (71%), Gaps = 0/110 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVT++DD DG A ETV FGLDGV+Y IDLS KNA KLR L+ W+++ +VGG
Sbjct 1 MAKKVTVTIIDDVDGQSVAAETVSFGLDGVSYTIDLSDKNAKKLRDVLEPWISSATKVGG 60
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHA 110
RR+ + +D+EQ IREWAR NG+ VS RGR+P +IDAY+A
Sbjct 61 RRKSGVSPAKVAAKVDKEQLGPIREWARANGYEVSPRGRVPQHIIDAYNA 110
>gi|257057503|ref|YP_003135335.1| hypothetical protein Svir_35520 [Saccharomonospora viridis DSM
43017]
gi|256587375|gb|ACU98508.1| hypothetical protein Svir_35520 [Saccharomonospora viridis DSM
43017]
Length=115
Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/113 (61%), Positives = 83/113 (74%), Gaps = 5/113 (4%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V+LVDD DGS ADETVEFGLDGV YEIDLS +NA +LR L Q+V RR GG
Sbjct 1 MAQKVFVSLVDDIDGS-EADETVEFGLDGVNYEIDLSAENAEELRDALAQYVEHARRAGG 59
Query 61 RRRGRSGSGRGRGA----IDREQSAAIREWARRNGHNVSTRGRIPADVIDAYH 109
R+R S G A +DREQ+ AIR WAR+NG+ VS RGRIP+++++AYH
Sbjct 60 RKRPSSRGGAKSPARSATVDREQNQAIRAWARKNGYEVSDRGRIPSEIVEAYH 112
>gi|54024283|ref|YP_118525.1| putative LSR2 protein [Nocardia farcinica IFM 10152]
gi|54015791|dbj|BAD57161.1| putative LSR2 protein [Nocardia farcinica IFM 10152]
Length=114
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/111 (62%), Positives = 80/111 (73%), Gaps = 2/111 (1%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV VT+VDD+DG A ETV FGLDGV YEIDLS +NA LR +QW R+VG
Sbjct 1 MARKVVVTIVDDYDGESQAAETVSFGLDGVGYEIDLSEQNAAALRQIFEQWTPYARKVGK 60
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
R RS R RG D+EQ+AAIREWARRNG+ VS+RGR+ ADV+ AY AA
Sbjct 61 SGRSRSVKQRERG--DQEQAAAIREWARRNGYEVSSRGRVSADVVAAYKAA 109
>gi|1333780|emb|CAA37572.1| LSR2 [Mycobacterium leprae]
Length=89
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/89 (93%), Positives = 86/89 (97%), Gaps = 0/89 (0%)
Query 24 EFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGGRRRGRSGSGRGRGAIDREQSAAI 83
EFGLDGVTYEIDL+ KNA KLRGDL+QWV+AGRRVGGRRRGRS SGRGRGAIDREQSAAI
Sbjct 1 EFGLDGVTYEIDLTNKNAAKLRGDLRQWVSAGRRVGGRRRGRSNSGRGRGAIDREQSAAI 60
Query 84 REWARRNGHNVSTRGRIPADVIDAYHAAT 112
REWARRNGHNVSTRGRIPADVIDA+HAAT
Sbjct 61 REWARRNGHNVSTRGRIPADVIDAFHAAT 89
>gi|317507815|ref|ZP_07965516.1| hypothetical protein HMPREF9336_01888 [Segniliparus rugosus ATCC
BAA-974]
gi|316253857|gb|EFV13226.1| hypothetical protein HMPREF9336_01888 [Segniliparus rugosus ATCC
BAA-974]
Length=113
Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/110 (54%), Positives = 75/110 (69%), Gaps = 0/110 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKVTVT++DD DG A ETV FGLDG +Y IDLS KNA KLR L+ W+ + +V G
Sbjct 1 MAKKVTVTIIDDVDGESVAAETVAFGLDGASYTIDLSEKNAKKLRDVLEPWILSATKVSG 60
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHA 110
RR+ + +D+EQ IREWAR NG+ VS RGR+P +IDAY++
Sbjct 61 RRKAAGAPSKVAAKVDKEQLGPIREWARSNGYEVSPRGRVPQHIIDAYNS 110
>gi|302530770|ref|ZP_07283112.1| iron-regulated LSR2 protein [Streptomyces sp. AA4]
gi|302439665|gb|EFL11481.1| iron-regulated LSR2 protein [Streptomyces sp. AA4]
Length=117
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/115 (59%), Positives = 83/115 (73%), Gaps = 7/115 (6%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V+LVDD DGS A+ETVEFGLDGV+Y+IDLS +NA +LR L Q+V RR GG
Sbjct 1 MAQKVLVSLVDDLDGS-EAEETVEFGLDGVSYQIDLSGENAEELRDALAQYVEHARRAGG 59
Query 61 RRRGR-----SGSGRGR-GAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYH 109
R+R G R A+DREQ+ AIR WAR+NG VS RGRIP++V++AYH
Sbjct 60 RKRAPLRPVAGGKSPARPAAVDREQNQAIRAWARKNGFQVSDRGRIPSEVVEAYH 114
>gi|256374485|ref|YP_003098145.1| hypothetical protein Amir_0330 [Actinosynnema mirum DSM 43827]
gi|255918788|gb|ACU34299.1| hypothetical protein Amir_0330 [Actinosynnema mirum DSM 43827]
Length=116
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/117 (59%), Positives = 83/117 (71%), Gaps = 12/117 (10%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KVTVTLVDD DG G A+ETV+FGLDGV Y+IDLS+ NA KLR L + A R+ GG
Sbjct 1 MAQKVTVTLVDDLDG-GVAEETVDFGLDGVAYQIDLSSVNAGKLRSALGAFTTAARKTGG 59
Query 61 RRRGRSGSGRGRG--------AIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYH 109
R+R G GR G + DREQ+ AIREWAR+ G VS RGRIPA+V++AYH
Sbjct 60 RKR---GPGRPAGVKAAARPASADREQNQAIREWARKQGMKVSDRGRIPAEVLEAYH 113
>gi|296137986|ref|YP_003645229.1| protein lsr2 [Tsukamurella paurometabola DSM 20162]
gi|296026120|gb|ADG76890.1| protein lsr2 precursor [Tsukamurella paurometabola DSM 20162]
Length=111
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/110 (59%), Positives = 78/110 (71%), Gaps = 1/110 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+ VTVTL DD + ADETV F LDGV YEIDL++ NA KLR L ++ AGRRVGG
Sbjct 1 MARTVTVTLTDDIEPEYEADETVVFALDGVEYEIDLASVNADKLRAALGTYIEAGRRVGG 60
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHA 110
R + R R +IDREQS AIR WA NG+ VS+RGRIP ++IDAY++
Sbjct 61 RAK-RGAKPGSRASIDREQSKAIRAWANANGYEVSSRGRIPQEIIDAYNS 109
>gi|134097861|ref|YP_001103522.1| putative lysyl tRNA synthetase-like protein [Saccharopolyspora
erythraea NRRL 2338]
gi|291005503|ref|ZP_06563476.1| putative lysyl tRNA synthetase-like protein [Saccharopolyspora
erythraea NRRL 2338]
gi|133910484|emb|CAM00597.1| putative lysyl tRNA synthetase-like protein [Saccharopolyspora
erythraea NRRL 2338]
Length=114
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/114 (58%), Positives = 81/114 (72%), Gaps = 4/114 (3%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KVTV LVDD DGS A+ TVEFGLDGV+Y IDLS +NA KLR L +VA+ RR GG
Sbjct 1 MAQKVTVQLVDDVDGS-EAESTVEFGLDGVSYSIDLSKENAAKLRDSLASYVASARRTGG 59
Query 61 RRR--GRSG-SGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
R+R G++ A DRE++ AIREWAR G VS RGRIP++V++AY A
Sbjct 60 RKRPGGKANKPASAPSAADRERNQAIREWAREQGMQVSDRGRIPSEVVEAYDNA 113
>gi|258651100|ref|YP_003200256.1| hypothetical protein Namu_0856 [Nakamurella multipartita DSM
44233]
gi|258554325|gb|ACV77267.1| hypothetical protein Namu_0856 [Nakamurella multipartita DSM
44233]
Length=119
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/119 (58%), Positives = 79/119 (67%), Gaps = 9/119 (7%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA TV+LVDD DGS AA E+VEF LDGV+YEIDLS +NA KLR L +VA+ RRV G
Sbjct 1 MATLTTVSLVDDLDGSEAA-ESVEFALDGVSYEIDLSEENAEKLRDALASYVASARRVDG 59
Query 61 RRRGRSGSGR--------GRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
RRG R A DREQ+AAIREWAR NG+ VS RGR+ A V+ A+ AA
Sbjct 60 GRRGARAKVAKPAKAARGSRTAPDREQTAAIREWARSNGYEVSERGRLSATVLSAFEAA 118
>gi|317508167|ref|ZP_07965850.1| Lsr2 protein [Segniliparus rugosus ATCC BAA-974]
gi|316253578|gb|EFV12965.1| Lsr2 protein [Segniliparus rugosus ATCC BAA-974]
Length=111
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/112 (54%), Positives = 76/112 (68%), Gaps = 2/112 (1%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAKKV VT+VDD D + ADETV FGLDG +Y IDLS NA K R L+ WVA+ +V G
Sbjct 1 MAKKVIVTMVDDTDNTLTADETVSFGLDGASYTIDLSALNAAKFRDQLEPWVASATKVSG 60
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
R ++ S + + E+ AAIR WA +NG+ VS RGR+PA+VI AY AA+
Sbjct 61 ARGRKAVSATQKNS--SEKLAAIRNWASKNGYEVSPRGRVPANVISAYEAAS 110
>gi|331697771|ref|YP_004334010.1| hypothetical protein Psed_3991 [Pseudonocardia dioxanivorans
CB1190]
gi|326952460|gb|AEA26157.1| hypothetical protein Psed_3991 [Pseudonocardia dioxanivorans
CB1190]
Length=111
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/108 (57%), Positives = 72/108 (67%), Gaps = 1/108 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MAK+ TVTLVDD DGS ADE VEF LDG YEIDLS N +LR L ++ A RR
Sbjct 1 MAKQTTVTLVDDIDGS-EADEQVEFALDGKHYEIDLSAANGKRLREALDPFINAARRAPS 59
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAY 108
RR G S +G R + DREQ+ AIREWA G +S RGRIP +V++AY
Sbjct 60 RRSGSSNAGPPRASSDREQNQAIREWAVSQGMKISERGRIPTNVLEAY 107
>gi|54024385|ref|YP_118627.1| putative LSR2 protein [Nocardia farcinica IFM 10152]
gi|54015893|dbj|BAD57263.1| putative LSR2 protein [Nocardia farcinica IFM 10152]
Length=114
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/111 (55%), Positives = 75/111 (68%), Gaps = 1/111 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KVTV LVDD DG ADETV F LDGV YE+DL T NA +LR QW RRV G
Sbjct 1 MARKVTVLLVDDVDGKSVADETVSFALDGVHYELDLCTANAEQLRSLFAQWTPFARRV-G 59
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
+ G + + R R A +++Q+ AIR WA+ NG VS+RGR+ A V++AYH A
Sbjct 60 KAAGGTRAPRSRRATEQDQTLAIRRWAQENGMQVSSRGRVSAAVVEAYHKA 110
>gi|345000384|ref|YP_004803238.1| putative Lsr2-like protein [Streptomyces sp. SirexAA-E]
gi|344316010|gb|AEN10698.1| putative Lsr2-like protein [Streptomyces sp. SirexAA-E]
Length=111
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/112 (58%), Positives = 79/112 (71%), Gaps = 4/112 (3%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V LVDD DG G ADETV F LDG TYEIDL+T NA KLRG L+ + +GRR GG
Sbjct 1 MAQKVQVLLVDDLDG-GEADETVTFALDGKTYEIDLTTSNADKLRGLLEPYTKSGRRTGG 59
Query 61 RRRGRSGSGRGRGAI-DREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
R +G G+GR + +A IR+WAR NGHNV+ RGR+PA++ +AY A
Sbjct 60 --RAATGRGKGRAVTGGNKDTAEIRKWARENGHNVNDRGRVPAEIREAYEKA 109
>gi|284034302|ref|YP_003384233.1| hypothetical protein Kfla_6437 [Kribbella flavida DSM 17836]
gi|283813595|gb|ADB35434.1| hypothetical protein Kfla_6437 [Kribbella flavida DSM 17836]
Length=110
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/113 (62%), Positives = 78/113 (70%), Gaps = 6/113 (5%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA++V V L DD DG G ADETV FGLDG TYEIDLS KNA KLR L +V AGR+V G
Sbjct 1 MAQRVQVVLEDDLDG-GKADETVTFGLDGTTYEIDLSKKNAAKLRDALAGYVGAGRKVAG 59
Query 61 RR--RGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
RR GR+ GRGR A D SA IR WA+ NG+ VS RGRI A+V AY+ A
Sbjct 60 RRGTTGRTARGRGRSATD---SADIRAWAKENGYEVSERGRISAEVRAAYNEA 109
>gi|320010063|gb|ADW04913.1| putative Lsr2-like protein [Streptomyces flavogriseus ATCC 33331]
Length=111
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/114 (58%), Positives = 81/114 (72%), Gaps = 8/114 (7%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V LVDD DG G ADETV F LDG TYEIDL+T NA KLRG L+ + +GRR G
Sbjct 1 MAQKVQVLLVDDLDG-GEADETVTFALDGKTYEIDLTTTNADKLRGLLEPYTKSGRRTG- 58
Query 61 RRRGRSGSGRGRG-AID--REQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
GR+ +GRG+G A+ + +A IR WAR NGHNV+ RGR+PA++ +AY A
Sbjct 59 ---GRAATGRGKGRAVSGGNKDTAEIRRWARENGHNVNDRGRVPAEIREAYEKA 109
>gi|336179416|ref|YP_004584791.1| putative lysyl tRNA synthetase-like protein [Frankia symbiont
of Datisca glomerata]
gi|334860396|gb|AEH10870.1| putative lysyl tRNA synthetase-like protein [Frankia symbiont
of Datisca glomerata]
Length=113
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/115 (58%), Positives = 80/115 (70%), Gaps = 7/115 (6%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+K V+L+DD DG ADETV FGLDG +YEIDLS KNATKLR L +V A RR GG
Sbjct 1 MAQKTIVSLIDDLDGH-EADETVRFGLDGASYEIDLSEKNATKLRESLAPFVGAARRSGG 59
Query 61 R----RRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
R RRG+ G+ R G DR +A IREWAR NG+ VS RGRI +++++AY A
Sbjct 60 RATAARRGQRGASRRTGGTDR--TADIREWARANGYTVSDRGRIASNIVEAYDKA 112
>gi|332669097|ref|YP_004452105.1| hypothetical protein Celf_0578 [Cellulomonas fimi ATCC 484]
gi|332338135|gb|AEE44718.1| hypothetical protein Celf_0578 [Cellulomonas fimi ATCC 484]
Length=112
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/112 (59%), Positives = 75/112 (67%), Gaps = 2/112 (1%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V LVDD DG G ADETV F LDGVTYEIDL+ +AT+LR L QWV R+VGG
Sbjct 1 MAQKVQVLLVDDIDG-GTADETVTFALDGVTYEIDLTAAHATELRDSLAQWVGHARKVGG 59
Query 61 RRR-GRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
R GR+ G + AIREWA+ NGH+VS RGRI ADV AY AA
Sbjct 60 RSSAGRTAPRPGGVKRSANDAQAIREWAKANGHHVSERGRISADVKAAYDAA 111
>gi|302529640|ref|ZP_07281982.1| iron-regulated LSR2 protein [Streptomyces sp. AA4]
gi|302438535|gb|EFL10351.1| iron-regulated LSR2 protein [Streptomyces sp. AA4]
Length=133
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/113 (54%), Positives = 80/113 (71%), Gaps = 6/113 (5%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V +VDD DGS A++TV F LDGV+YEIDLS +NA LR +L ++VAA RRVGG
Sbjct 1 MAQKVHVEMVDDIDGS-IAEQTVPFSLDGVSYEIDLSEENAAALREELARYVAASRRVGG 59
Query 61 RRRGRSGSGR----GRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYH 109
R+ R +G+ A DRE++ A+REWA NG VS RGR+PA+++ AY
Sbjct 60 -RKVRMAAGQSPRPASTAADRERNKAMREWAEANGFTVSDRGRLPAEIVKAYE 111
>gi|239988662|ref|ZP_04709326.1| putative Lsr2-like protein [Streptomyces roseosporus NRRL 11379]
gi|291445651|ref|ZP_06585041.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291348598|gb|EFE75502.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length=111
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/113 (57%), Positives = 77/113 (69%), Gaps = 4/113 (3%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V LVDD DG ADETV F LDG TYEIDL+T NA KLRG L+ + GRR GG
Sbjct 1 MAQKVQVLLVDDLDGV-EADETVTFALDGKTYEIDLTTANADKLRGLLEPYTKGGRRTGG 59
Query 61 RRRGRSGSGRGRGAI-DREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
R +G G+GR A + +A IR WAR NGHNV+ RGR+PA++ +AY A
Sbjct 60 --RAATGRGKGRAAAGGNKDTAEIRRWARENGHNVNDRGRVPAEIREAYEKAN 110
>gi|182437909|ref|YP_001825628.1| putative Lsr2-like protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326778545|ref|ZP_08237810.1| putative Lsr2-like protein [Streptomyces cf. griseus XylebKG-1]
gi|178466425|dbj|BAG20945.1| putative Lsr2-like protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326658878|gb|EGE43724.1| putative Lsr2-like protein [Streptomyces griseus XylebKG-1]
Length=111
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/115 (56%), Positives = 78/115 (68%), Gaps = 8/115 (6%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V LVDD DG ADETV F LDG TYEIDL+T NA KLRG L+ + GRR G
Sbjct 1 MAQKVQVLLVDDLDGV-EADETVTFALDGKTYEIDLTTANADKLRGLLEPYTKGGRRTG- 58
Query 61 RRRGRSGSGRGRG---AIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
GR+ +GRG+G A + +A IR WAR NGHNV+ RGR+PA++ +AY A
Sbjct 59 ---GRAATGRGKGRAVAGGNKDTAEIRRWARENGHNVNDRGRVPAEIREAYEKAN 110
>gi|300783632|ref|YP_003763923.1| lysyl tRNA synthetase-like protein [Amycolatopsis mediterranei
U32]
gi|299793146|gb|ADJ43521.1| putative lysyl tRNA synthetase-like protein [Amycolatopsis mediterranei
U32]
gi|340525023|gb|AEK40228.1| lysyl tRNA synthetase-like protein [Amycolatopsis mediterranei
S699]
Length=137
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/112 (54%), Positives = 80/112 (72%), Gaps = 2/112 (1%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V ++DD DGS AA +TV+FGLDGVTYEIDLS +NA+ LR +L +++ AGRR+GG
Sbjct 1 MAQKVLVEILDDIDGSTAA-QTVQFGLDGVTYEIDLSDENASALRDELARYIGAGRRIGG 59
Query 61 RR-RGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
R+ R +G DRE++ IR WA NG+ VS RGR+ ++VI AY A
Sbjct 60 RKVRVATGQSTTTSTTDRERNQQIRAWANANGYEVSERGRLSSEVIAAYEQA 111
>gi|284989233|ref|YP_003407787.1| protein lsr2 [Geodermatophilus obscurus DSM 43160]
gi|284062478|gb|ADB73416.1| protein lsr2 precursor [Geodermatophilus obscurus DSM 43160]
Length=117
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/116 (57%), Positives = 78/116 (68%), Gaps = 5/116 (4%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V L DD D + ADETV F LDG YEIDLS KNA +LR ++V A R+VG
Sbjct 1 MARKVQVILSDDLDENVPADETVSFSLDGTNYEIDLSEKNAQELRDAFSRYVQAARKVGR 60
Query 61 RRRGRSGSGR-----GRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
SG GR G G +DREQ+ AIR+WAR+NGH VS RGRIPA V++AY AA
Sbjct 61 GGGRASGGGRSRATGGGGRMDREQAGAIRDWARKNGHAVSDRGRIPASVVEAYEAA 116
>gi|302553196|ref|ZP_07305538.1| conserved hypothetical protein [Streptomyces viridochromogenes
DSM 40736]
gi|302470814|gb|EFL33907.1| conserved hypothetical protein [Streptomyces viridochromogenes
DSM 40736]
Length=111
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/112 (58%), Positives = 77/112 (69%), Gaps = 4/112 (3%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V LVDD DG G ADETV F LDG TYEIDL+T NA +LRG L+ +V GRR GG
Sbjct 1 MAQKVQVLLVDDLDG-GEADETVTFALDGKTYEIDLTTSNADQLRGLLEPYVKGGRRTGG 59
Query 61 RRRGRSGSGRGRGAIDREQ-SAAIREWARRNGHNVSTRGRIPADVIDAYHAA 111
R G G G+ R A Q +AAIR WA+ NG+ V+ RGR+PA + +AY A
Sbjct 60 RASG--GRGKARAASSGSQDTAAIRAWAKENGYEVNDRGRVPATIREAYEKA 109
>gi|84497264|ref|ZP_00996086.1| putative Lsr2-like protein [Janibacter sp. HTCC2649]
gi|84382152|gb|EAP98034.1| putative Lsr2-like protein [Janibacter sp. HTCC2649]
Length=112
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/112 (57%), Positives = 76/112 (68%), Gaps = 6/112 (5%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA++V V LVDD D S A DETV F LDGVTYEIDL+ NA+KLR WV RR GG
Sbjct 6 MAQRVQVLLVDDLDNSDA-DETVTFALDGVTYEIDLNEGNASKLRDAFAPWVGHARRSGG 64
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
R+ +GR GA R+ +A+REWAR+NGH+VS RGRIPA + +AY A
Sbjct 65 RK----ATGRSAGA-RRKDVSAVREWARKNGHDVSERGRIPATIQEAYDKAN 111
>gi|329939476|ref|ZP_08288812.1| Lsr2-like protein [Streptomyces griseoaurantiacus M045]
gi|329301705|gb|EGG45599.1| Lsr2-like protein [Streptomyces griseoaurantiacus M045]
Length=112
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/112 (55%), Positives = 73/112 (66%), Gaps = 1/112 (0%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V LVDD DG G ADETV F LDG TYEIDL+T NA KLRG L +V GRR GG
Sbjct 1 MAQKVQVLLVDDLDG-GEADETVTFALDGKTYEIDLTTANADKLRGLLDPYVKGGRRTGG 59
Query 61 RRRGRSGSGRGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
R G G R + + +A IR WA+ NG+ V+ RGR+PA + +AY A
Sbjct 60 RASGGRGKARAAASGGSQDTAQIRAWAKENGYEVNDRGRVPATIREAYEKAN 111
>gi|302559273|ref|ZP_07311615.1| Lsr2 protein [Streptomyces griseoflavus Tu4000]
gi|302476891|gb|EFL39984.1| Lsr2 protein [Streptomyces griseoflavus Tu4000]
Length=111
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/113 (57%), Positives = 76/113 (68%), Gaps = 4/113 (3%)
Query 1 MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGG 60
MA+KV V LVDD DG G ADETV F LDG TYEIDL+T NA KLRG L +V GRR GG
Sbjct 1 MAQKVQVLLVDDLDG-GEADETVTFALDGKTYEIDLTTANADKLRGLLDPYVKGGRRTGG 59
Query 61 RRRGRSGSGRGRGAIDREQ-SAAIREWARRNGHNVSTRGRIPADVIDAYHAAT 112
R G G G+ R + Q +AAIR WA+ NG+ V+ RGR+PA + +AY A
Sbjct 60 RASG--GRGKARASSGGSQDTAAIRAWAKENGYEVNDRGRVPASIREAYEKAN 110
Lambda K H
0.316 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128047486336
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40