BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3599c

Length=27
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610735|ref|NP_218116.1|  hypothetical protein Rv3599c [Mycob...  55.8    2e-06


>gi|15610735|ref|NP_218116.1| hypothetical protein Rv3599c [Mycobacterium tuberculosis H37Rv]
 gi|254233101|ref|ZP_04926427.1| hypothetical short protein [Mycobacterium tuberculosis C]
 gi|339633598|ref|YP_004725240.1| short protein [Mycobacterium africanum GM041182]
 6 more sequence titles
 Length=27

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 27/27 (100%), Positives = 27/27 (100%), Gaps = 0/27 (0%)

Query  1   MPASSLGTGSPAADRLDATHERRREVI  27
           MPASSLGTGSPAADRLDATHERRREVI
Sbjct  1   MPASSLGTGSPAADRLDATHERRREVI  27



Lambda     K      H
   0.313    0.126    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129734268800


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40