BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3599c
Length=27
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610735|ref|NP_218116.1| hypothetical protein Rv3599c [Mycob... 55.8 2e-06
>gi|15610735|ref|NP_218116.1| hypothetical protein Rv3599c [Mycobacterium tuberculosis H37Rv]
gi|254233101|ref|ZP_04926427.1| hypothetical short protein [Mycobacterium tuberculosis C]
gi|339633598|ref|YP_004725240.1| short protein [Mycobacterium africanum GM041182]
6 more sequence titles
Length=27
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/27 (100%), Positives = 27/27 (100%), Gaps = 0/27 (0%)
Query 1 MPASSLGTGSPAADRLDATHERRREVI 27
MPASSLGTGSPAADRLDATHERRREVI
Sbjct 1 MPASSLGTGSPAADRLDATHERRREVI 27
Lambda K H
0.313 0.126 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129734268800
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40