BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3604c

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|57117132|ref|NP_218121.2|  transmembrane protein [Mycobacteriu...   767    0.0   
gi|289748118|ref|ZP_06507496.1|  conserved alanine, arginine and ...   766    0.0   
gi|31794780|ref|NP_857273.1|  transmembrane protein [Mycobacteriu...   764    0.0   
gi|15843216|ref|NP_338253.1|  hypothetical protein MT3709 [Mycoba...   764    0.0   
gi|340628569|ref|YP_004747021.1|  hypothetical protein MCAN_36161...   750    0.0   
gi|297733273|ref|ZP_06962391.1|  hypothetical protein MtubKR_1937...   728    0.0   
gi|254366158|ref|ZP_04982202.1|  conserved transmembrane protein ...   679    0.0   
gi|289555866|ref|ZP_06445076.1|  conserved alanine, arginine and ...   639    0.0   
gi|298527082|ref|ZP_07014491.1|  conserved transmembrane protein ...   506    2e-141
gi|289571843|ref|ZP_06452070.1|  conserved alanine, arginine and ...   477    1e-132
gi|289445198|ref|ZP_06434942.1|  conserved alanine, arginine and ...   477    1e-132
gi|289763782|ref|ZP_06523160.1|  conserved transmembrane protein ...   393    3e-107
gi|15827025|ref|NP_301288.1|  hypothetical protein ML0228 [Mycoba...   328    7e-88 
gi|41406552|ref|NP_959388.1|  hypothetical protein MAP0454 [Mycob...   287    2e-75 
gi|336458524|gb|EGO37495.1|  hypothetical protein MAPs_12340 [Myc...   286    3e-75 
gi|342862045|ref|ZP_08718689.1|  hypothetical protein MCOL_24260 ...   286    5e-75 
gi|254773207|ref|ZP_05214723.1|  hypothetical protein MaviaA2_007...   284    2e-74 
gi|118619360|ref|YP_907692.1|  transmembrane protein rich in alan...   271    2e-70 
gi|183985075|ref|YP_001853366.1|  transmembrane protein rich in a...   270    3e-70 
gi|240172847|ref|ZP_04751506.1|  transmembrane protein rich in al...   270    5e-70 
gi|118464078|ref|YP_879829.1|  hypothetical protein MAV_0549 [Myc...   262    8e-68 
gi|254822687|ref|ZP_05227688.1|  hypothetical protein MintA_22349...   251    1e-64 
gi|296166670|ref|ZP_06849095.1|  conserved hypothetical protein [...   243    4e-62 
gi|108801727|ref|YP_641924.1|  hypothetical protein Mmcs_4764 [My...   215    1e-53 
gi|126437714|ref|YP_001073405.1|  hypothetical protein Mjls_5150 ...   215    1e-53 
gi|315446246|ref|YP_004079125.1|  hypothetical protein Mspyr1_474...   195    1e-47 
gi|145222014|ref|YP_001132692.1|  hypothetical protein Mflv_1422 ...   195    1e-47 
gi|169627643|ref|YP_001701292.1|  hypothetical protein MAB_0539 [...   193    4e-47 
gi|120406314|ref|YP_956143.1|  hypothetical protein Mvan_5366 [My...   183    4e-44 
gi|118470986|ref|YP_890320.1|  hypothetical protein MSMEG_6099 [M...   182    1e-43 
gi|333992533|ref|YP_004525147.1|  hypothetical protein JDM601_389...   164    3e-38 
gi|111021385|ref|YP_704357.1|  hypothetical protein RHA1_ro04413 ...   133    5e-29 
gi|226363739|ref|YP_002781521.1|  hypothetical protein ROP_43290 ...   132    8e-29 
gi|312138058|ref|YP_004005394.1|  integral membrane protein [Rhod...   125    8e-27 
gi|226304120|ref|YP_002764078.1|  hypothetical protein RER_06310 ...   118    2e-24 
gi|325675041|ref|ZP_08154728.1|  hypothetical protein HMPREF0724_...   118    2e-24 
gi|333917995|ref|YP_004491576.1|  hypothetical protein AS9A_0317 ...   117    5e-24 
gi|229494569|ref|ZP_04388332.1|  putative conserved transmembrane...   115    9e-24 
gi|296392861|ref|YP_003657745.1|  hypothetical protein Srot_0427 ...   115    2e-23 
gi|302530782|ref|ZP_07283124.1|  predicted protein [Streptomyces ...   112    1e-22 
gi|343924372|ref|ZP_08763922.1|  hypothetical protein GOALK_015_0...   108    2e-21 
gi|300790545|ref|YP_003770836.1|  hypothetical protein AMED_8741 ...   107    3e-21 
gi|262203866|ref|YP_003275074.1|  hypothetical protein Gbro_4011 ...   107    3e-21 
gi|326384081|ref|ZP_08205764.1|  hypothetical protein SCNU_14149 ...   107    4e-21 
gi|296138301|ref|YP_003645544.1|  hypothetical protein Tpau_0565 ...  96.3    8e-18 
gi|54022368|ref|YP_116610.1|  hypothetical protein nfa4040 [Nocar...  92.0    1e-16 
gi|256374474|ref|YP_003098134.1|  hypothetical protein Amir_0319 ...  90.9    3e-16 
gi|340532232|gb|AEK47437.1|  hypothetical protein RAM_44850 [Amyc...  90.9    3e-16 
gi|317507810|ref|ZP_07965511.1|  hypothetical protein HMPREF9336_...  84.3    3e-14 
gi|237786209|ref|YP_002906914.1|  hypothetical protein ckrop_1646...  84.3    3e-14 


>gi|57117132|ref|NP_218121.2| transmembrane protein [Mycobacterium tuberculosis H37Rv]
 gi|148663468|ref|YP_001284991.1| putative alanine, arginine and proline rich transmembrane protein 
[Mycobacterium tuberculosis H37Ra]
 gi|148824809|ref|YP_001289563.1| alanine, arginine and proline transmembrane protein [Mycobacterium 
tuberculosis F11]
 44 more sequence titles
 Length=397

 Score =  767 bits (1981),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/397 (100%), Positives = 397/397 (100%), Gaps = 0/397 (0%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD
Sbjct  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180
            EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA
Sbjct  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180

Query  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240
            VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER
Sbjct  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240

Query  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300
            PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL
Sbjct  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300

Query  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS  360
            AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS
Sbjct  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS  360

Query  361  GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE  397
            GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE
Sbjct  361  GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE  397


>gi|289748118|ref|ZP_06507496.1| conserved alanine, arginine and proline rich membrane protein 
[Mycobacterium tuberculosis T92]
 gi|289688705|gb|EFD56134.1| conserved alanine, arginine and proline rich membrane protein 
[Mycobacterium tuberculosis T92]
Length=397

 Score =  766 bits (1977),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/397 (99%), Positives = 397/397 (100%), Gaps = 0/397 (0%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAA+
Sbjct  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAE  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180
            EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA
Sbjct  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180

Query  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240
            VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER
Sbjct  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240

Query  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300
            PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL
Sbjct  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300

Query  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS  360
            AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS
Sbjct  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS  360

Query  361  GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE  397
            GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE
Sbjct  361  GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE  397


>gi|31794780|ref|NP_857273.1| transmembrane protein [Mycobacterium bovis AF2122/97]
 gi|121639523|ref|YP_979747.1| putative transmembrane protein rich in alanine and arginine and 
proline [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224992020|ref|YP_002646709.1| putative transmembrane protein rich in alanine and arginine and 
proline [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31620377|emb|CAD95820.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN RICH IN ALANINE AND 
ARGININE AND PROLINE [Mycobacterium bovis AF2122/97]
 gi|121495171|emb|CAL73657.1| Probable conserved transmembrane protein rich in alanine and 
arginine and proline [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224775135|dbj|BAH27941.1| putative transmembrane protein rich in alanine and arginine and 
proline [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341603544|emb|CCC66225.1| probable conserved transmembrane protein rich in alanine and 
arginine and proline [Mycobacterium bovis BCG str. Moreau RDJ]
Length=397

 Score =  764 bits (1974),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/397 (99%), Positives = 396/397 (99%), Gaps = 0/397 (0%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD
Sbjct  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180
            EVAALRAELAALRTSLEILFDADLEHRPALGT EKEARAARALDGESPPADWVSSDRVMA
Sbjct  121  EVAALRAELAALRTSLEILFDADLEHRPALGTGEKEARAARALDGESPPADWVSSDRVMA  180

Query  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240
            VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER
Sbjct  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240

Query  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300
            PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL
Sbjct  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300

Query  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS  360
            AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS
Sbjct  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS  360

Query  361  GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE  397
            GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE
Sbjct  361  GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE  397


>gi|15843216|ref|NP_338253.1| hypothetical protein MT3709 [Mycobacterium tuberculosis CDC1551]
 gi|13883570|gb|AAK48067.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
Length=397

 Score =  764 bits (1972),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/397 (99%), Positives = 396/397 (99%), Gaps = 0/397 (0%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRR GWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRRGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD
Sbjct  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180
            EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA
Sbjct  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180

Query  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240
            VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER
Sbjct  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240

Query  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300
            PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL
Sbjct  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300

Query  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS  360
            AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS
Sbjct  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS  360

Query  361  GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE  397
            GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE
Sbjct  361  GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE  397


>gi|340628569|ref|YP_004747021.1| hypothetical protein MCAN_36161 [Mycobacterium canettii CIPT 
140010059]
 gi|340006759|emb|CCC45947.1| putative conserved transmembrane protein rich in alanine and 
arginine and proline [Mycobacterium canettii CIPT 140010059]
Length=397

 Score =  750 bits (1936),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 391/397 (99%), Positives = 391/397 (99%), Gaps = 0/397 (0%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRA AAD
Sbjct  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAQAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180
            EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA
Sbjct  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180

Query  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240
            VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQE 
Sbjct  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQEP  240

Query  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300
            PVWQPVTSHGQWLPA TPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL
Sbjct  241  PVWQPVTSHGQWLPAGTPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300

Query  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS  360
            AAQYGESGRRSRHSAEHRDHD GGSGAGTGERPPSPPMAPPPPAEPT RHRTAD PPDDS
Sbjct  301  AAQYGESGRRSRHSAEHRDHDNGGSGAGTGERPPSPPMAPPPPAEPTPRHRTADAPPDDS  360

Query  361  GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE  397
            GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE
Sbjct  361  GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE  397


>gi|297733273|ref|ZP_06962391.1| hypothetical protein MtubKR_19375 [Mycobacterium tuberculosis 
KZN R506]
 gi|308372594|ref|ZP_07429199.2| conserved alanine, arginine and proline rich membrane protein 
[Mycobacterium tuberculosis SUMu004]
 gi|308372682|ref|ZP_07429502.2| conserved alanine, arginine and proline rich membrane protein 
[Mycobacterium tuberculosis SUMu005]
 8 more sequence titles
 Length=378

 Score =  728 bits (1880),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 377/378 (99%), Positives = 378/378 (100%), Gaps = 0/378 (0%)

Query  20   VLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRD  79
            +LLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRD
Sbjct  1    MLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRD  60

Query  80   LKLVYDLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRAELAALRTSLEIL  139
            LKLVYDLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRAELAALRTSLEIL
Sbjct  61   LKLVYDLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRAELAALRTSLEIL  120

Query  140  FDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMAVRGGDGASRTDEASIIDVP  199
            FDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMAVRGGDGASRTDEASIIDVP
Sbjct  121  FDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMAVRGGDGASRTDEASIIDVP  180

Query  200  EVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQERPVWQPVTSHGQWLPAETPG  259
            EVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQERPVWQPVTSHGQWLPAETPG
Sbjct  181  EVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQERPVWQPVTSHGQWLPAETPG  240

Query  260  SQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVELAAQYGESGRRSRHSAEHRD  319
            SQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVELAAQYGESGRRSRHSAEHRD
Sbjct  241  SQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVELAAQYGESGRRSRHSAEHRD  300

Query  320  HDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDSGGLHARDPLTGGQSVADLM  379
            HDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDSGGLHARDPLTGGQSVADLM
Sbjct  301  HDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDSGGLHARDPLTGGQSVADLM  360

Query  380  ARLQVESTGGGRRRRRGE  397
            ARLQVESTGGGRRRRRGE
Sbjct  361  ARLQVESTGGGRRRRRGE  378


>gi|254366158|ref|ZP_04982202.1| conserved transmembrane protein rich in alanine and arginine 
and proline [Mycobacterium tuberculosis str. Haarlem]
 gi|134151670|gb|EBA43715.1| conserved transmembrane protein rich in alanine and arginine 
and proline [Mycobacterium tuberculosis str. Haarlem]
Length=423

 Score =  679 bits (1751),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 350/351 (99%), Positives = 351/351 (100%), Gaps = 0/351 (0%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA
Sbjct  66   MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  125

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD
Sbjct  126  FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  185

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180
            EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA
Sbjct  186  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  245

Query  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240
            VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER
Sbjct  246  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  305

Query  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300
            PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL
Sbjct  306  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  365

Query  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHR  351
            AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRH+
Sbjct  366  AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHK  416


>gi|289555866|ref|ZP_06445076.1| conserved alanine, arginine and proline rich membrane protein 
[Mycobacterium tuberculosis KZN 605]
 gi|289440498|gb|EFD22991.1| conserved alanine, arginine and proline rich membrane protein 
[Mycobacterium tuberculosis KZN 605]
Length=330

 Score =  639 bits (1649),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 330/330 (100%), Positives = 330/330 (100%), Gaps = 0/330 (0%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD
Sbjct  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180
            EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA
Sbjct  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180

Query  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240
            VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER
Sbjct  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240

Query  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300
            PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL
Sbjct  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300

Query  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTG  330
            AAQYGESGRRSRHSAEHRDHDIGGSGAGTG
Sbjct  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTG  330


>gi|298527082|ref|ZP_07014491.1| conserved transmembrane protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298496876|gb|EFI32170.1| conserved transmembrane protein [Mycobacterium tuberculosis 94_M4241A]
Length=259

 Score =  506 bits (1304),  Expect = 2e-141, Method: Compositional matrix adjust.
 Identities = 258/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  139  LFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMAVRGGDGASRTDEASIIDV  198
            +FDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMAVRGGDGASRTDEASIIDV
Sbjct  1    MFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMAVRGGDGASRTDEASIIDV  60

Query  199  PEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQERPVWQPVTSHGQWLPAETP  258
            PEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQERPVWQPVTSHGQWLPAETP
Sbjct  61   PEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQERPVWQPVTSHGQWLPAETP  120

Query  259  GSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVELAAQYGESGRRSRHSAEHR  318
            GSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVELAAQYGESGRRSRHSAEHR
Sbjct  121  GSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVELAAQYGESGRRSRHSAEHR  180

Query  319  DHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDSGGLHARDPLTGGQSVADL  378
            DHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDSGGLHARDPLTGGQSVADL
Sbjct  181  DHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDSGGLHARDPLTGGQSVADL  240

Query  379  MARLQVESTGGGRRRRRGE  397
            MARLQVESTGGGRRRRRGE
Sbjct  241  MARLQVESTGGGRRRRRGE  259


>gi|289571843|ref|ZP_06452070.1| conserved alanine, arginine and proline rich membrane protein 
[Mycobacterium tuberculosis T17]
 gi|289545597|gb|EFD49245.1| conserved alanine, arginine and proline rich membrane protein 
[Mycobacterium tuberculosis T17]
Length=397

 Score =  477 bits (1228),  Expect = 1e-132, Method: Compositional matrix adjust.
 Identities = 381/397 (96%), Positives = 387/397 (98%), Gaps = 0/397 (0%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD
Sbjct  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180
            EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA
Sbjct  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180

Query  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240
            VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER
Sbjct  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240

Query  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300
            PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL
Sbjct  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYNPPAYVEL  300

Query  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDS  360
            AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPP EPTR+HRTADTPPDDS
Sbjct  301  AAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPGEPTRQHRTADTPPDDS  360

Query  361  GGLHARDPLTGGQSVADLMARLQVESTGGGRRRRRGE  397
            GGLHA +P+T  Q V++LM RL+VE TGGGR R R E
Sbjct  361  GGLHAPNPVTDVQYVSELMFRLEVEFTGGGRHRHRAE  397


>gi|289445198|ref|ZP_06434942.1| conserved alanine, arginine and proline rich membrane protein 
[Mycobacterium tuberculosis CPHL_A]
 gi|289418156|gb|EFD15357.1| conserved alanine, arginine and proline rich membrane protein 
[Mycobacterium tuberculosis CPHL_A]
Length=245

 Score =  477 bits (1228),  Expect = 1e-132, Method: Compositional matrix adjust.
 Identities = 244/245 (99%), Positives = 245/245 (100%), Gaps = 0/245 (0%)

Query  153  VEKEARAARALDGESPPADWVSSDRVMAVRGGDGASRTDEASIIDVPEVGVPPVSGGPRH  212
            +EKEARAARALDGESPPADWVSSDRVMAVRGGDGASRTDEASIIDVPEVGVPPVSGGPRH
Sbjct  1    MEKEARAARALDGESPPADWVSSDRVMAVRGGDGASRTDEASIIDVPEVGVPPVSGGPRH  60

Query  213  YEAPPPPQPEPLFEPRHRPPPLPPQQERPVWQPVTSHGQWLPAETPGSQWASVEPETTPA  272
            YEAPPPPQPEPLFEPRHRPPPLPPQQERPVWQPVTSHGQWLPAETPGSQWASVEPETTPA
Sbjct  61   YEAPPPPQPEPLFEPRHRPPPLPPQQERPVWQPVTSHGQWLPAETPGSQWASVEPETTPA  120

Query  273  APPPGRRRRARHASPADQAYNPPAYVELAAQYGESGRRSRHSAEHRDHDIGGSGAGTGER  332
            APPPGRRRRARHASPADQAYNPPAYVELAAQYGESGRRSRHSAEHRDHDIGGSGAGTGER
Sbjct  121  APPPGRRRRARHASPADQAYNPPAYVELAAQYGESGRRSRHSAEHRDHDIGGSGAGTGER  180

Query  333  PPSPPMAPPPPAEPTRRHRTADTPPDDSGGLHARDPLTGGQSVADLMARLQVESTGGGRR  392
            PPSPPMAPPPPAEPTRRHRTADTPPDDSGGLHARDPLTGGQSVADLMARLQVESTGGGRR
Sbjct  181  PPSPPMAPPPPAEPTRRHRTADTPPDDSGGLHARDPLTGGQSVADLMARLQVESTGGGRR  240

Query  393  RRRGE  397
            RRRGE
Sbjct  241  RRRGE  245


>gi|289763782|ref|ZP_06523160.1| conserved transmembrane protein rich in alanine and arginine 
and proline [Mycobacterium tuberculosis GM 1503]
 gi|289711288|gb|EFD75304.1| conserved transmembrane protein rich in alanine and arginine 
and proline [Mycobacterium tuberculosis GM 1503]
Length=396

 Score =  393 bits (1010),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 327/402 (82%), Positives = 333/402 (83%), Gaps = 31/402 (7%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD
Sbjct  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180
            EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA
Sbjct  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180

Query  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240
            VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER
Sbjct  181  VRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQER  240

Query  241  PVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASP----ADQAYNPPA  296
            PVWQPVTSHGQWLPAETPG+Q ASVEPETTPA P P     AR  +P    +       A
Sbjct  241  PVWQPVTSHGQWLPAETPGNQCASVEPETTPAVPRP-----ARWVAPGLLLSRLGLQSAA  295

Query  297  YVELAAQYGES--GRRSRHSAEHRDHDIGGSGAGTGER---------PPSPPMAPPPPAE  345
            YVELAAQY  S  GR  R     R +    S A    R         P    ++P     
Sbjct  296  YVELAAQYVNSVAGRVIR-----RSNATMTSAAPVPRRVSVRRHLQWPRRRLLSPHAGNA  350

Query  346  PTRRHRTADTPPDDSGGLHARDPLTGGQSVADLMARLQVEST  387
            P  R R      DDSGGLHARDPLTGGQSVADLMARLQVEST
Sbjct  351  PRTRRR------DDSGGLHARDPLTGGQSVADLMARLQVEST  386


>gi|15827025|ref|NP_301288.1| hypothetical protein ML0228 [Mycobacterium leprae TN]
 gi|221229503|ref|YP_002502919.1| hypothetical protein MLBr_00228 [Mycobacterium leprae Br4923]
 gi|3097219|emb|CAA18790.1| putative membrane protein [Mycobacterium leprae]
 gi|13092572|emb|CAC29736.1| putative membrane protein [Mycobacterium leprae]
 gi|219932610|emb|CAR70321.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=432

 Score =  328 bits (842),  Expect = 7e-88, Method: Compositional matrix adjust.
 Identities = 247/423 (59%), Positives = 281/423 (67%), Gaps = 40/423 (9%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRG RVRRGGRRPGWVLLT  L+LA+GASSALVFT+RVELLKLAV+LALWAAVAGA
Sbjct  1    MTVLSRGGRVRRGGRRPGWVLLTVSLILAMGASSALVFTNRVELLKLAVILALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSV YRRQSD DQ+RVR+LKLVYDLQLDREISARREYELT+ESQLRRELASELR+ AAD
Sbjct  61   FVSVFYRRQSDADQSRVRNLKLVYDLQLDREISARREYELTVESQLRRELASELRSQAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEK-EARAA--------RALDGESPPAD  171
            EV ALRAELAALRT+LEILFD DL+HRPAL   E  +A+AA           DG+S P D
Sbjct  121  EVLALRAELAALRTNLEILFDTDLQHRPALAGAEAPQAKAAPPTCAYSNWVRDGQSKPVD  180

Query  172  WVSSDRVMAVRGGDGASRTDEASIIDVPEV------GVPPVSGGPRHYEAPPPPQPEPLF  225
            WV S+RV +VR     +  D+ SIIDVPE       G  P  GG   +   PP Q +  F
Sbjct  181  WVPSNRVTSVRQDRVTNSADDTSIIDVPEEPLLPPRGQAPQQGGVLPHFEDPPSQSDSRF  240

Query  226  EPRHRPPPLPPQQE-----RPVWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRR  280
            EPRHRPP   P QE        WQP  +  QWLP  T  S W  VE  +   A P GRRR
Sbjct  241  EPRHRPPRSAPLQELLQPHMKDWQPDAADEQWLPPGTQDSAWTDVESASASVAAPSGRRR  300

Query  281  RARHASPADQAYNPPAYVELAAQYGESGR--RSRHSAEHRDHDIGGSGAGTGERP---PS  335
            R+RH+S  + A + P   E A Q+  SGR  RSRHSAE+R + I G  A  G  P   P+
Sbjct  301  RSRHSSLDEAAASSPGEAETAQQHSGSGRRARSRHSAEYRAYSIEGITA-KGSTPISQPT  359

Query  336  PP-----------MAPPPPAEPTRRHRTADTPPDDSGGLHARDPLTGGQSVADLMARLQV  384
            PP           + P  P++P  RHR+AD   D   G+  RD   GGQSVADLMARL  
Sbjct  360  PPAGPAFAEQPPRLVPASPSDPVPRHRSADLLTD---GVKGRDLAAGGQSVADLMARLGA  416

Query  385  EST  387
            EST
Sbjct  417  EST  419


>gi|41406552|ref|NP_959388.1| hypothetical protein MAP0454 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394901|gb|AAS02771.1| hypothetical protein MAP_0454 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=462

 Score =  287 bits (735),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 251/461 (55%), Positives = 282/461 (62%), Gaps = 87/461 (18%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLA+GASSALVFT+RVELLKLAV+LALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAMGASSALVFTNRVELLKLAVILALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSD DQ+RVRDLKLVYDLQLDREISARREYELT+ESQLRRELASELRA AAD
Sbjct  61   FVSVLYRRQSDADQSRVRDLKLVYDLQLDREISARREYELTVESQLRRELASELRAQAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARAL-----DGESP---PADW  172
            ++A LRAEL+ALRTSLEILFD DL  RPALG  E E +  RA      +GE+P   P DW
Sbjct  121  DLAELRAELSALRTSLEILFDTDLGQRPALGAFEGEPQPERAYSEWERNGENPRDTPVDW  180

Query  173  VSSDRVMAVRGGDGASRTDEASIIDVPEV-GVPPVSGGPR-------HYEAPPPPQPEPL  224
            V SDRV +        R DE +IIDVPE   +PP    P         Y+ PP P  EP 
Sbjct  181  VPSDRVTSAPQEHPPGRHDETAIIDVPEEPLMPPRPQQPAPLRRERPRYQEPPGPT-EPR  239

Query  225  FEPRHRPPPLPPQQERPV--------------------------WQPVTSHGQWLPAETP  258
            FEPR++PPP       P                           WQPV + GQWLP  +P
Sbjct  240  FEPRYQPPPAAAATPPPPETPPEPPREPQPEPQPEPQPQPQGRDWQPVGAEGQWLPPGSP  299

Query  259  GSQWASVEPETTPAAPPPGRRRRARHASPADQAYN-PPAYVELAAQYGESGR--RSRHSA  315
            GS WA  + E+T      G RRRARH S AD+A++  P        Y ESGR  RSRHSA
Sbjct  300  GSNWAGADAEST------GGRRRARH-SGADEAWDGMPVEPVPPPPYAESGRRARSRHSA  352

Query  316  EHRDHDIGGSGAGT------------------------------GERPPSPPMAPPPPAE  345
            E+RD+ +     G+                                  P P +APPP AE
Sbjct  353  EYRDYGVRNFAPGSEPPAGPAPAPPPPAAATPPPPAAPAPSGPAAGASPPPRLAPPPAAE  412

Query  346  PTRRHRTADTPPDDSGGLHARDPL-TGGQSVADLMARLQVE  385
             T RH     P D      ARD   TGGQSVADL+ARLQV+
Sbjct  413  HTPRHGGEPEPADPR---RARDASGTGGQSVADLLARLQVQ  450


>gi|336458524|gb|EGO37495.1| hypothetical protein MAPs_12340 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=453

 Score =  286 bits (733),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 248/452 (55%), Positives = 278/452 (62%), Gaps = 78/452 (17%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLA+GASSALVFT+RVELLKLAV+LALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAMGASSALVFTNRVELLKLAVILALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSD DQ+RVRDLKLVYDLQLDREISARREYELT+ESQLRRELASELRA AAD
Sbjct  61   FVSVLYRRQSDADQSRVRDLKLVYDLQLDREISARREYELTVESQLRRELASELRAQAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARAL-----DGESP---PADW  172
            ++A LRAEL+ALRTSLEILFD DL  RPALG  E E +  RA      +GE+P   P DW
Sbjct  121  DLAELRAELSALRTSLEILFDTDLGQRPALGAFEGEPQPERAYSEWERNGENPRDTPVDW  180

Query  173  VSSDRVMAVRGGDGASRTDEASIIDVPE--------VGVPPVSGGPRHYEAPPPPQPEPL  224
            V SDRV +        R DE +IIDVPE            P       Y+ PP P  EP 
Sbjct  181  VPSDRVTSAPQEHPPGRHDETAIIDVPEEPLMPPRPQQPAPPRRERPRYQEPPGPT-EPR  239

Query  225  FEPRHRPPPLPPQQERPV--------------------------WQPVTSHGQWLPAETP  258
            FEPR++PPP       P                           WQPV +  QWLP  +P
Sbjct  240  FEPRYQPPPAAAATPPPPETPPEPPREPQPEPQPEPQPQPQGRDWQPVGAERQWLPPGSP  299

Query  259  GSQWASVEPETTPAAPPPGRRRRARHASPADQAYN-PPAYVELAAQYGESGR--RSRHSA  315
            GS WA  + E+T      G RRRARH S AD+A++  P        Y ESGR  RSRHSA
Sbjct  300  GSNWAGADAEST------GGRRRARH-SGADEAWDGMPVEPVPPPPYAESGRRARSRHSA  352

Query  316  EHRDHDIGGSGAGT---------------------GERPPSPPMAPPPPAEPTRRHRTAD  354
            E+RD+ +     G+                         P P +APPP AE T RH    
Sbjct  353  EYRDYGVRNFAPGSEPPAGPAPAPPPPAPAPSGPAAGASPPPRLAPPPAAEHTPRHGGEP  412

Query  355  TPPDDSGGLHARDPL-TGGQSVADLMARLQVE  385
             P D      ARD   TGGQSVADL+ARLQV+
Sbjct  413  EPADPR---RARDASGTGGQSVADLLARLQVQ  441


>gi|342862045|ref|ZP_08718689.1| hypothetical protein MCOL_24260 [Mycobacterium colombiense CECT 
3035]
 gi|342130585|gb|EGT83894.1| hypothetical protein MCOL_24260 [Mycobacterium colombiense CECT 
3035]
Length=414

 Score =  286 bits (732),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 226/400 (57%), Positives = 252/400 (63%), Gaps = 78/400 (19%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLA+GASSALVFT+RVELLKLAV+LALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAMGASSALVFTNRVELLKLAVILALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSD DQ+RVRDLKLVYDLQLDREISARREYELT+ESQLRRELASELRA AAD
Sbjct  61   FVSVLYRRQSDADQSRVRDLKLVYDLQLDREISARREYELTVESQLRRELASELRAQAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPAL-GTVEKEARAARAL-----DGESP---PAD  171
            ++A LRAEL+ALRTSLEILFD DL HRPAL GT E E +  RA      +GE+P   P D
Sbjct  121  DLAELRAELSALRTSLEILFDTDLAHRPALGGTPEAEPQPERAYSEWDRNGENPRDTPVD  180

Query  172  WVSSDRVMAVRGGDGASRTDEASIIDVPE-----------------------VGVPPVSG  208
            WV SDRV +V   D A R D+A IIDVPE                          P  + 
Sbjct  181  WVPSDRVTSV-PPDNAGRADDA-IIDVPEEPLIPPRQQPPPRRERVRHQYEPAADPAYAE  238

Query  209  GPRHYEAPPPPQ-------PEPLFEPRHRPPPLP--------------------------  235
             P + E P   Q        EP FEPRH+PPP P                          
Sbjct  239  EPSYAEEPSYAQEPSYSGPAEPRFEPRHQPPPAPAAQFQPEPQPEPAPRPEPAPEPEPQR  298

Query  236  -PQQERP--VWQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAY  292
             PQ + P   WQP  + GQWLP   PGS WA  +  T       G RRRARH S  D+A+
Sbjct  299  QPQAQWPGQGWQPAAAEGQWLPPGAPGSNWAGADAPTDST----GGRRRARH-SGVDEAW  353

Query  293  NP-PAYVELAAQYGESGR--RSRHSAEHRDHDIGGSGAGT  329
            +  P      A YG+SGR  RSRHSAE+RD+ +     G 
Sbjct  354  DGLPVEPVPPAPYGDSGRRARSRHSAEYRDYGVRNFSPGN  393


>gi|254773207|ref|ZP_05214723.1| hypothetical protein MaviaA2_00796 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=368

 Score =  284 bits (726),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 219/374 (59%), Positives = 246/374 (66%), Gaps = 53/374 (14%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLA+GASSALVFT+RVELLKLAV+LALWAAVAGA
Sbjct  3    MTVLSRGARVRRGGRRPGWVLLTALLVLAMGASSALVFTNRVELLKLAVILALWAAVAGA  62

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSD DQ+RVRDLKLVYDLQLDREISARREYELT+ESQLRRELASELRA AAD
Sbjct  63   FVSVLYRRQSDADQSRVRDLKLVYDLQLDREISARREYELTVESQLRRELASELRAQAAD  122

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARAL-----DGESP---PADW  172
            ++A LRAEL+ALRTSLEILFD DL  RPALG  E E +  RA      +GE+P   P DW
Sbjct  123  DLAELRAELSALRTSLEILFDTDLGQRPALGAFEGEPQPERAYSEWERNGENPRDTPVDW  182

Query  173  VSSDRVMAVRGGDGASRTDEASIIDVPE--------VGVPPVSGGPRHYEAPPPPQPEPL  224
            V SDRV +        R DE +IIDVPE            P       Y+ PP P  EP 
Sbjct  183  VPSDRVTSAPQEHPPGRHDETAIIDVPEEPLMPPRPQQPAPPRRERPRYQEPPGP-AEPR  241

Query  225  FEPRHRPPPLPPQQERPV--------------------------WQPVTSHGQWLPAETP  258
            FEPR++PPP       P                           WQPV + GQWLP  +P
Sbjct  242  FEPRYQPPPAAAATPPPPEMPPEPPREPQPEPQPEPQPQPQGRDWQPVGAEGQWLPPGSP  301

Query  259  GSQWASVEPETTPAAPPPGRRRRARHASPADQAYN-PPAYVELAAQYGESGR--RSRHSA  315
            GS WA  + E+T      G RRRARH S AD+A++  P        Y ESGR  RSRHSA
Sbjct  302  GSNWAGADAEST------GGRRRARH-SGADEAWDGMPVEPVPPPPYAESGRRARSRHSA  354

Query  316  EHRDHDIGGSGAGT  329
            E+RD+ +     G+
Sbjct  355  EYRDYGVRNFAPGS  368


>gi|118619360|ref|YP_907692.1| transmembrane protein rich in alanine, arginine and proline [Mycobacterium 
ulcerans Agy99]
 gi|118571470|gb|ABL06221.1| conserved transmembrane protein rich in alanine, arginine and 
proline [Mycobacterium ulcerans Agy99]
Length=450

 Score =  271 bits (693),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 232/441 (53%), Positives = 267/441 (61%), Gaps = 59/441 (13%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLT LLVLAIGASSALVFT+RVELLKLAV+LALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTTLLVLAIGASSALVFTNRVELLKLAVVLALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQ++ DQAR RD+KLVYDLQLDREISARREYEL +ESQLRRELA+ELR  AAD
Sbjct  61   FVSVLYRRQAEADQARARDMKLVYDLQLDREISARREYELAVESQLRRELAAELRGAAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARAL-----DGESPPADWVSS  175
            EVAALRAELA+LRTSL ILFDAD+E RPAL TV++E+R ARA+     +GESP  DW+ S
Sbjct  121  EVAALRAELASLRTSLGILFDADVEQRPALETVDRESRTARAVADRLQNGESPATDWLPS  180

Query  176  DRVMAVRGGDGASRTDEASIIDVPEVGVPPVSG---------------------------  208
            DR+   R  +  +R +EA IIDVPEVGVPP+                             
Sbjct  181  DRIAMARRDENLNRAEEA-IIDVPEVGVPPLDERDVQPGRGPFLQPPPPAPPGPEHPAEW  239

Query  209  -GPRHYEAPPPPQPEPLFEPRHRPPPLPPQQERPVWQPVTSHGQWLPAETPGSQWASVEP  267
             GP    AP  P        R  P P  P  E P+W+PV + GQWLP   PGS W  V  
Sbjct  240  VGPPQEAAPVQPDLHYEPHRRPPPAPPVPNAEPPLWRPVAADGQWLPPGAPGSHW--VAE  297

Query  268  ETTPAAPPPGRRRRARHASPADQAYNPPAYVELAAQYGESGRRSRHSAEHRDHDIG----  323
            E   A        R R A   D   +     E   +YG    RSRHS ++RD+ +G    
Sbjct  298  EAAGAETQDRSSGRRRRARHYDSDEDQGDIGEFDREYGGRRSRSRHSTDYRDYGVGRLGA  357

Query  324  -------------------GSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDSGGLH  364
                                        P +P +APPP  +   RHR  +    D  G H
Sbjct  358  GPPPGPGPAQPPPMASAAPPWPGPQPAEPAAPRLAPPPAPDLASRHRRPEEERPDVAGSH  417

Query  365  ARDPLTGGQSVADLMARLQVE  385
              D  +GGQSVADLMARLQV+
Sbjct  418  DSDSQSGGQSVADLMARLQVQ  438


>gi|183985075|ref|YP_001853366.1| transmembrane protein rich in alanine, arginine and proline [Mycobacterium 
marinum M]
 gi|183178401|gb|ACC43511.1| conserved transmembrane protein rich in alanine, arginine and 
proline [Mycobacterium marinum M]
Length=450

 Score =  270 bits (691),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 236/441 (54%), Positives = 274/441 (63%), Gaps = 59/441 (13%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLT LLVLAIGASSALVFT+RVELLKLAV+LALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTTLLVLAIGASSALVFTNRVELLKLAVVLALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQ++ DQAR RD+KLVYDLQLDREISARREYEL +ESQLRRELA+ELR  AAD
Sbjct  61   FVSVLYRRQAEADQARARDMKLVYDLQLDREISARREYELAVESQLRRELAAELRGAAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARAL-----DGESPPADWVSS  175
            EVAALRAELA+LRTSL ILFDADLE RPAL TV++E+R ARA+     +GESP  DW+ S
Sbjct  121  EVAALRAELASLRTSLGILFDADLEQRPALETVDRESRTARAVADRLQNGESPATDWLPS  180

Query  176  DRVMAVRGGDGASRTDEASIIDVPEVGVPPVS-------GGPR---------------HY  213
            DR+   R  +  +R +EA IIDVPEVGVPP+        GGP                 +
Sbjct  181  DRIAMARRDENLNRAEEA-IIDVPEVGVPPLDERDVQPGGGPFLQPPPPAPPGPEHPAEW  239

Query  214  EAPP----PPQPEPLFEPRHRPPPLPPQQERPV--WQPVTSHGQWLPAETPGSQWASVEP  267
              PP    P QP+  +EP  RPPP PP        W+PV + GQWLP   PGS W + E 
Sbjct  240  VGPPQEAAPVQPDLHYEPHRRPPPAPPVPNAEPSPWRPVAADGQWLPPGAPGSHWVAEEA  299

Query  268  ETTPAAPPPGRRRRARHASPADQAYNPPAYVELAAQYGESGRRSRHSAEHRDHDIG----  323
                       RRR      +D+        E   +YG    RSRHS ++RD+ +G    
Sbjct  300  AGAETQDRSSGRRRRARHYGSDEGQGDIG--EFDREYGGRRSRSRHSTDYRDYGVGRLGA  357

Query  324  -------------------GSGAGTGERPPSPPMAPPPPAEPTRRHRTADTPPDDSGGLH  364
                                        P +P +APPP  +   RHR  +    D  G H
Sbjct  358  GPPPGPGPAQPPPMAPAAPPWPGPQPAEPAAPRLAPPPAPDLASRHRRPEEERPDVAGSH  417

Query  365  ARDPLTGGQSVADLMARLQVE  385
              D  +GGQSVADLMARLQV+
Sbjct  418  DSDSQSGGQSVADLMARLQVQ  438


>gi|240172847|ref|ZP_04751506.1| transmembrane protein rich in alanine, arginine and proline [Mycobacterium 
kansasii ATCC 12478]
Length=454

 Score =  270 bits (689),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 251/445 (57%), Positives = 281/445 (64%), Gaps = 63/445 (14%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLT LLVLAI ASSALVFT+RVELLKLAV+LALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTTLLVLAIAASSALVFTNRVELLKLAVILALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQ+D +QAR RDLKLVYDLQLDREISARREYELT+ES LRRELA+ELRA AAD
Sbjct  61   FVSVLYRRQADAEQARARDLKLVYDLQLDREISARREYELTVESHLRRELAAELRAAAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEK----EARAARAL-----DGESPPAD  171
            EVAALRAEL ALRTSLEILFD D EHRPAL  ++K    EAR +RA+     +G  P AD
Sbjct  121  EVAALRAELTALRTSLEILFDTDFEHRPALEPMDKTGATEARRSRAVADRVQNGRGPSAD  180

Query  172  WVSSDRVMAVRGGDGASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPR---  228
            WVS DRV  VR G+  +R +EA IIDVPEVG+PP          P PP  EP        
Sbjct  181  WVSIDRVAVVRPGEAVNRAEEA-IIDVPEVGMPPYDDRDVSPAGPLPPSAEPAGTKHSAE  239

Query  229  -----HRPPPLPP----------------QQERPVWQPVTSHGQWLPAETPGSQWASVEP  267
                 +   P PP                Q E   W+PV + GQWLP   PGS WA  EP
Sbjct  240  RVGLPYETAPAPPGPRDEPRHRPPPAPPPQPEPSSWEPVAADGQWLPPGAPGSHWAPGEP  299

Query  268  ETTPAAPPPGRRRRARHASP-ADQAYNPPAYVELAAQYGESGRRSRHSAEHRDHDIGGSG  326
               P A P GRRRR RH  P  DQ      +VE+   YG    RSRHS E+RDH +G  G
Sbjct  300  AAAPTAQPAGRRRRYRHTRPEEDQGDISLGHVEVPGDYGGRRSRSRHSTEYRDHGVGSLG  359

Query  327  AGT--------------------------GERPPSPPMAPPPPAEPTRRHRTADTPPDDS  360
            A +                             PP P +A PPP EP  RHR+ +  P+ +
Sbjct  360  AASRADGPSPVVAPPPSAVPPPPTPVPERPTAPPPPRLAAPPPPEPAARHRSPE--PEPA  417

Query  361  GGLHARDPLTGGQSVADLMARLQVE  385
             G H  D  TGGQSVADL+ARLQV+
Sbjct  418  VGAHGSDAQTGGQSVADLLARLQVQ  442


>gi|118464078|ref|YP_879829.1| hypothetical protein MAV_0549 [Mycobacterium avium 104]
 gi|118165365|gb|ABK66262.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=421

 Score =  262 bits (669),  Expect = 8e-68, Method: Compositional matrix adjust.
 Identities = 210/420 (50%), Positives = 239/420 (57%), Gaps = 87/420 (20%)

Query  42   VELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELT  101
            +ELLKLAV+LALWAAVAGAFVSVLYRRQSD DQ+RVRDLKLVYDLQLDREISARREYELT
Sbjct  1    MELLKLAVILALWAAVAGAFVSVLYRRQSDADQSRVRDLKLVYDLQLDREISARREYELT  60

Query  102  LESQLRRELASELRAPAADEVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAAR  161
            +ESQLRRELASELRA AAD++A LRAEL+ALRTSLEILFD DL  RPALG  E E +  R
Sbjct  61   VESQLRRELASELRAQAADDLAELRAELSALRTSLEILFDTDLGQRPALGAFEGEPQPER  120

Query  162  AL-----DGESP---PADWVSSDRVMAVRGGDGASRTDEASIIDVPE--------VGVPP  205
            A      +GE+P   P DWV SDRV +        R DE +IIDVPE            P
Sbjct  121  AYSEWERNGENPRDTPVDWVPSDRVTSAPQEHPPGRHDETAIIDVPEEPLMPPRPQQPAP  180

Query  206  VSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQERPV-----------------------  242
                   Y+ PP P  EP FEPR++PPP       P                        
Sbjct  181  PRRERPRYQEPPGPT-EPRFEPRYQPPPAAAATPPPPETPPDPPREPQPEPQPEPQPQPQ  239

Query  243  ---WQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRARHASPADQAYN-PPAYV  298
               WQPV + GQWLP  +PGS WA  + E+T      G RRRARH S AD+A++  P   
Sbjct  240  GRDWQPVGAEGQWLPPGSPGSNWAGADAEST------GGRRRARH-SGADEAWDGMPVEP  292

Query  299  ELAAQYGESGR--RSRHSAEHRDHDIGGSGAGT---------------------------  329
                 Y ESGR  RSRHSAE+RD+ +     G+                           
Sbjct  293  VPPPPYAESGRRARSRHSAEYRDYGVRNFAPGSEPPAGPAPAPPPPAAATPPPPAAPAPS  352

Query  330  ---GERPPSPPMAPPPPAEPTRRHRTADTPPDDSGGLHARDPL-TGGQSVADLMARLQVE  385
                  PP P +APPP AE T RH     P D      ARD   TGGQSVADL+ARLQV+
Sbjct  353  GPAAGAPPPPRLAPPPAAEHTPRHGGEPEPADPR---RARDASGTGGQSVADLLARLQVQ  409


>gi|254822687|ref|ZP_05227688.1| hypothetical protein MintA_22349 [Mycobacterium intracellulare 
ATCC 13950]
Length=382

 Score =  251 bits (642),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 167/208 (81%), Positives = 179/208 (87%), Gaps = 8/208 (3%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFT+RVELLKLAV+LALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTNRVELLKLAVILALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSD DQARVRDLKLVYDLQLDREISARREYELT+ESQLRRELASELRA AAD
Sbjct  61   FVSVLYRRQSDADQARVRDLKLVYDLQLDREISARREYELTVESQLRRELASELRAQAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARAL-----DGESP---PADW  172
            ++A LRAEL+ALRTSLEILFD DL HRPALGTVE E +  RA      +GE+P   P DW
Sbjct  121  DLAELRAELSALRTSLEILFDTDLAHRPALGTVESEPQPERAYSEWDRNGETPRDNPVDW  180

Query  173  VSSDRVMAVRGGDGASRTDEASIIDVPE  200
            V SDRV +V   +   R DE +IIDVPE
Sbjct  181  VPSDRVTSVPQDNPRGRADETAIIDVPE  208


>gi|296166670|ref|ZP_06849095.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897935|gb|EFG77516.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=235

 Score =  243 bits (620),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 164/208 (79%), Positives = 177/208 (86%), Gaps = 8/208 (3%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVLSRGARVRRGGRRPGWVLLTALLVLA+GASSALVFT+RVELLKLAV+LALWAAVAGA
Sbjct  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAMGASSALVFTNRVELLKLAVILALWAAVAGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSVLYRRQSD DQ+RVRDLKLVYDLQLDREISARREYELT+ESQLRRELASELRA AAD
Sbjct  61   FVSVLYRRQSDADQSRVRDLKLVYDLQLDREISARREYELTVESQLRRELASELRAQAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARAL-----DGESP---PADW  172
            ++A LRAEL+ALRTSLEILFD DL  RPAL T E E    RA      +GE+P   P DW
Sbjct  121  DLAELRAELSALRTSLEILFDTDLAQRPALETPEAEPAPERAYSEWDRNGETPRDAPYDW  180

Query  173  VSSDRVMAVRGGDGASRTDEASIIDVPE  200
            VSSDRV +V     +SR DE +IIDVPE
Sbjct  181  VSSDRVTSVPQDTPSSRADETAIIDVPE  208


>gi|108801727|ref|YP_641924.1| hypothetical protein Mmcs_4764 [Mycobacterium sp. MCS]
 gi|119870878|ref|YP_940830.1| hypothetical protein Mkms_4850 [Mycobacterium sp. KMS]
 gi|108772146|gb|ABG10868.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119696967|gb|ABL94040.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=446

 Score =  215 bits (547),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 146/203 (72%), Positives = 162/203 (80%), Gaps = 4/203 (1%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVL RG R RRG RRPGW+LLT LLVLAI ASSALVFT+RVELLKLAV+LALWAAVA A
Sbjct  10   MTVLPRGPRARRGNRRPGWMLLTVLLVLAIVASSALVFTNRVELLKLAVILALWAAVAAA  69

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSV+YRRQSD DQA+ RDLKLVYDLQLDREISARREYELT+E+QLRRELA+EL+A AAD
Sbjct  70   FVSVIYRRQSDHDQAKARDLKLVYDLQLDREISARREYELTVETQLRRELANELQAQAAD  129

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRV-M  179
            EVAALRAELAALRT+LEILFDADL HRPAL       RA      ++     VSS R+  
Sbjct  130  EVAALRAELAALRTNLEILFDADLAHRPALEHDRTTVRAYSDWAPDNETTGRVSSSRLDE  189

Query  180  AVRGGD---GASRTDEASIIDVP  199
             +R  D     SRT+E+ IIDVP
Sbjct  190  MLRDADIDESESRTEESPIIDVP  212


>gi|126437714|ref|YP_001073405.1| hypothetical protein Mjls_5150 [Mycobacterium sp. JLS]
 gi|126237514|gb|ABO00915.1| hypothetical protein Mjls_5150 [Mycobacterium sp. JLS]
Length=446

 Score =  215 bits (547),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 144/203 (71%), Positives = 161/203 (80%), Gaps = 4/203 (1%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTVL RG R RRG RRPGW+LLT LLVLAI ASSALVFT+RVELLKLAV+LALWAAVA A
Sbjct  10   MTVLPRGPRARRGNRRPGWMLLTVLLVLAIVASSALVFTNRVELLKLAVILALWAAVAAA  69

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            FVSV+YRRQSD DQA+ RDLKLVYDLQLDREISARREYELT+E+QLRRELA+EL+A AAD
Sbjct  70   FVSVIYRRQSDHDQAKARDLKLVYDLQLDREISARREYELTVETQLRRELANELQAQAAD  129

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMA  180
            EVAALRAELAALRT+LEILFDADL HRPAL       RA      ++     VSS R+  
Sbjct  130  EVAALRAELAALRTNLEILFDADLAHRPALEHDRTTVRAYSDWAPDNETTGRVSSSRLDE  189

Query  181  V----RGGDGASRTDEASIIDVP  199
            +       +  SRT+E+ IIDVP
Sbjct  190  MLRDAEVDESESRTEESPIIDVP  212


>gi|315446246|ref|YP_004079125.1| hypothetical protein Mspyr1_47490 [Mycobacterium sp. Spyr1]
 gi|315264549|gb|ADU01291.1| hypothetical protein Mspyr1_47490 [Mycobacterium sp. Spyr1]
Length=385

 Score =  195 bits (495),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 122/185 (66%), Positives = 140/185 (76%), Gaps = 10/185 (5%)

Query  22   LTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRDLK  81
            +T LLVLAI ASSALVFT RVELL+LAV+LALWAAV  AFVSV+YRRQSD DQA+VRDLK
Sbjct  1    MTVLLVLAIAASSALVFTSRVELLRLAVILALWAAVVAAFVSVIYRRQSDSDQAKVRDLK  60

Query  82   LVYDLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRAELAALRTSLEILFD  141
            LVYDLQL+REISARREYEL++ES LRRELASEL+A ++DEVA+LRAELAALR +LE LFD
Sbjct  61   LVYDLQLEREISARREYELSVESHLRRELASELQAQSSDEVASLRAELAALRANLEYLFD  120

Query  142  ADLEHRPALGTVEKEARAARA-LDGESPPADWVSSDRVMAVRGGDGASRTDEASIIDVPE  200
            ADL HRPAL T     R   + +D E         D V+A      A  T+E+ IIDVP 
Sbjct  121  ADLSHRPALETERTAGRVTSSRIDTE---------DDVVAAAEEPDAPETEESPIIDVPA  171

Query  201  VGVPP  205
               PP
Sbjct  172  EPHPP  176


>gi|145222014|ref|YP_001132692.1| hypothetical protein Mflv_1422 [Mycobacterium gilvum PYR-GCK]
 gi|145214500|gb|ABP43904.1| hypothetical protein Mflv_1422 [Mycobacterium gilvum PYR-GCK]
Length=380

 Score =  195 bits (495),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 122/185 (66%), Positives = 140/185 (76%), Gaps = 10/185 (5%)

Query  22   LTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRDLK  81
            +T LLVLAI ASSALVFT RVELL+LAV+LALWAAV  AFVSV+YRRQSD DQA+VRDLK
Sbjct  1    MTVLLVLAIAASSALVFTSRVELLRLAVILALWAAVVAAFVSVIYRRQSDSDQAKVRDLK  60

Query  82   LVYDLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRAELAALRTSLEILFD  141
            LVYDLQL+REISARREYEL++ES LRRELASEL+A ++DEVA+LRAELAALR +LE LFD
Sbjct  61   LVYDLQLEREISARREYELSVESHLRRELASELQAQSSDEVASLRAELAALRANLEYLFD  120

Query  142  ADLEHRPALGTVEKEARAARA-LDGESPPADWVSSDRVMAVRGGDGASRTDEASIIDVPE  200
            ADL HRPAL T     R   + +D E         D V+A      A  T+E+ IIDVP 
Sbjct  121  ADLSHRPALETERTAGRVTSSRIDTE---------DDVVAAAEEPDAPETEESPIIDVPA  171

Query  201  VGVPP  205
               PP
Sbjct  172  EPHPP  176


>gi|169627643|ref|YP_001701292.1| hypothetical protein MAB_0539 [Mycobacterium abscessus ATCC 19977]
 gi|169239610|emb|CAM60638.1| Conserved hypothetical transmembrane protein [Mycobacterium abscessus]
Length=493

 Score =  193 bits (491),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 123/217 (57%), Positives = 147/217 (68%), Gaps = 20/217 (9%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MT+ +R A+ RRG RRPGW LLTALLVLAIG+  ALVFTD+   L++ +LLALWAAV  +
Sbjct  1    MTMPTRAAKPRRGSRRPGWALLTALLVLAIGSGIALVFTDKAIYLRVGLLLALWAAVIAS  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
            F ++ YRRQSD DQA+VRD KLVYDLQL+REISARREYELT+ES+LR++LA E+ A AAD
Sbjct  61   FAALTYRRQSDTDQAKVRDQKLVYDLQLEREISARREYELTVESRLRQQLAGEIEAQAAD  120

Query  121  EVAALRAELAALRTSLEILFDADLEHRPALGT----------------VEKEARAARALD  164
            E+A LRAELAALRT+LEILF+ DL  RPA+                  V   + AA A  
Sbjct  121  EIATLRAELAALRTNLEILFNTDLSDRPAIEHDPIRALGPWPGAEPQPVPTTSTAAFAHS  180

Query  165  GESP-PADWVSSDRVMAVRGGDGASRTDEASIIDVPE  200
               P PA    +D    V   D  SRT E  IIDV E
Sbjct  181  VREPQPA---VADEYQDVTAVDEDSRTSEYPIIDVAE  214


>gi|120406314|ref|YP_956143.1| hypothetical protein Mvan_5366 [Mycobacterium vanbaalenii PYR-1]
 gi|119959132|gb|ABM16137.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=396

 Score =  183 bits (465),  Expect = 4e-44, Method: Compositional matrix adjust.
 Identities = 130/194 (68%), Positives = 144/194 (75%), Gaps = 19/194 (9%)

Query  17   PGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQAR  76
            PGW+L+T LLVLAI ASSALVFT+RVELLKLAV+LALWAAV  AFVSV+YRRQSD DQA+
Sbjct  17   PGWILMTVLLVLAIAASSALVFTNRVELLKLAVILALWAAVVAAFVSVIYRRQSDADQAK  76

Query  77   VRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRAELAALRTSL  136
            VRDLKLVYDLQLDREISARREYEL +E+ LRRELASELRA +ADEVAALRAELAALR +L
Sbjct  77   VRDLKLVYDLQLDREISARREYELAVETHLRRELASELRAQSADEVAALRAELAALRANL  136

Query  137  EILFDADLEHRPALGTVEKEARAARALDGESPPADWVSSDRVMAVRGGDGAS-----RTD  191
            E LFD DL HRPA   +E E  A R           VSS R+        A      +TD
Sbjct  137  EFLFDTDLSHRPA---IETERTAGR-----------VSSSRIDTQEDFRAAEEPYAPKTD  182

Query  192  EASIIDVPEVGVPP  205
            E+ IIDVP    PP
Sbjct  183  ESPIIDVPAEPHPP  196


>gi|118470986|ref|YP_890320.1| hypothetical protein MSMEG_6099 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118172273|gb|ABK73169.1| probable conserved transmembrane protein rich in alanine [Mycobacterium 
smegmatis str. MC2 155]
Length=516

 Score =  182 bits (461),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 127/181 (71%), Positives = 141/181 (78%), Gaps = 4/181 (2%)

Query  25   LLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRDLKLVY  84
            LLVLAI ASSALVFT+RVELLKLAV+LALWAAV  AFVSV+YRRQSD+DQA+ RDLKLVY
Sbjct  2    LLVLAILASSALVFTNRVELLKLAVILALWAAVVAAFVSVIYRRQSDLDQAKARDLKLVY  61

Query  85   DLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRAELAALRTSLEILFDADL  144
            DLQLDREISARREYELT+E+QLRRELASELRA AADEVAALRAELAALR +LEILFDADL
Sbjct  62   DLQLDREISARREYELTVETQLRRELASELRAQAADEVAALRAELAALRANLEILFDADL  121

Query  145  EHRPALGTVEKEARAARALDGESPPADWVSSDRVMAVRGGDGASRTDEASIIDVPEVGVP  204
             HRPAL T    AR A  +         V +  +   R    + RT+E+ IIDVP    P
Sbjct  122  AHRPALETDRAAARPAGRVHASRLDVPDVETTDIRDYR----SERTEESPIIDVPAEPHP  177

Query  205  P  205
            P
Sbjct  178  P  178


 Score = 37.0 bits (84),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 15/28 (54%), Positives = 20/28 (72%), Gaps = 1/28 (3%)

Query  243  WQPVTSHGQWLPAETPGSQWAS-VEPET  269
            WQP  + GQW+PA  PGS WA+ V+P+ 
Sbjct  340  WQPAPAEGQWIPAGAPGSNWAAPVQPQN  367


>gi|333992533|ref|YP_004525147.1| hypothetical protein JDM601_3893 [Mycobacterium sp. JDM601]
 gi|333488501|gb|AEF37893.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=461

 Score =  164 bits (414),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 129/204 (64%), Positives = 145/204 (72%), Gaps = 21/204 (10%)

Query  37   VFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARR  96
            +FT RVELLKLAV++ALWAAVA AFVSV+YRRQSDVDQAR RDLKLVYDLQLDREISARR
Sbjct  1    MFTSRVELLKLAVIVALWAAVAAAFVSVIYRRQSDVDQARARDLKLVYDLQLDREISARR  60

Query  97   EYELTLESQLRRELASELRAPAADEVAALRAELAALRTSLEILFDADLEHRPALGTVEKE  156
            EYELT+ESQLRRELASELRA AADEVAALRAELAALRT+LEILFD+DL HRPAL T    
Sbjct  61   EYELTVESQLRRELASELRAQAADEVAALRAELAALRTNLEILFDSDLSHRPALETDSAA  120

Query  157  ARAARALDGESPPADWVSS----------DRVMAVRGGDGASRTDEASIIDVPEVGVPPV  206
                RA       +DW  S              A    D  ++T E+ IIDVPEVG+P  
Sbjct  121  RTTIRAY------SDWARSGGESDGARATPAAAAYYPEDPVTQTTESPIIDVPEVGIP--  172

Query  207  SGG---PRHYEAPPPPQPEPLFEP  227
            +GG   P  ++   PPQP    +P
Sbjct  173  TGGIPTPAAHQTYQPPQPSQTSQP  196


 Score = 49.3 bits (116),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 54/165 (33%), Positives = 72/165 (44%), Gaps = 30/165 (18%)

Query  243  WQPVTSHGQWLPAETPGSQWASVEPETTPAAPPPGRRRRA--RHASPADQAYNPPAYVEL  300
            W+PV + G+WLP  +PGS W++   ET P A   GR   A  RHA     A  P    E 
Sbjct  301  WKPVGAEGEWLPPGSPGSNWSA---ETPPTAADSGRHGAADPRHAGEDAVAAAPERSAEA  357

Query  301  AAQYG-------------ESGRRSRHSAEHRDHDIGGSG---AGTGERPPSPPMAPPPPA  344
             +++G                 R+RH  E R            G+  +P S P + P   
Sbjct  358  PSRHGRHAGPGTLADGPVNGAERARHDGEGRRRARSRHSAEPVGSHAQPESAPGSAP---  414

Query  345  EPTRRHRTADTPPDDSGGLHARDPLTGGQSVADLMARLQVESTGG  389
              + RH T   P  ++       P TGGQSVA+L+ARLQ   T G
Sbjct  415  GRSARHSTGAEPGTEAA------PNTGGQSVAELLARLQATPTEG  453


>gi|111021385|ref|YP_704357.1| hypothetical protein RHA1_ro04413 [Rhodococcus jostii RHA1]
 gi|110820915|gb|ABG96199.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=337

 Score =  133 bits (335),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 73/144 (51%), Positives = 101/144 (71%), Gaps = 5/144 (3%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MT   R    RR  R    +++  LL LA+ AS  L+F+D V+LL++ ++ ALWAA  GA
Sbjct  14   MTNPGRLKSARRNRRSASQMIVAGLLALAVIASLFLIFSDSVQLLRVGLVAALWAATVGA  73

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
                 YRR+S +D+A+V DL+ VY+LQL+REISARREYELT+E ++R    SE+RA  A+
Sbjct  74   IAMTKYRRESALDKAKVNDLQTVYELQLEREISARREYELTVEKRVR----SEVRAD-AE  128

Query  121  EVAALRAELAALRTSLEILFDADL  144
            E+AALRAEL++LR +LE LFD  +
Sbjct  129  ELAALRAELSSLRKNLEALFDGAM  152


>gi|226363739|ref|YP_002781521.1| hypothetical protein ROP_43290 [Rhodococcus opacus B4]
 gi|226242228|dbj|BAH52576.1| hypothetical protein [Rhodococcus opacus B4]
Length=327

 Score =  132 bits (333),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 73/141 (52%), Positives = 100/141 (71%), Gaps = 5/141 (3%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MT   R    RR  R    +++  LL LA+ AS  L+F+D V+LL++ ++ ALWAA  GA
Sbjct  1    MTNPGRLKSARRNRRSASQMIVAGLLALAVIASLFLIFSDSVQLLRVGLVAALWAATVGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
                 YRR+S +D+A+V DL+ VY+LQL+REISARREYELT+E ++R    SE+RA  A+
Sbjct  61   IAMTKYRRESALDKAKVSDLQTVYELQLEREISARREYELTVEKRVR----SEVRAD-AE  115

Query  121  EVAALRAELAALRTSLEILFD  141
            E+AALRAEL++LR +LE LFD
Sbjct  116  ELAALRAELSSLRKNLEALFD  136


>gi|312138058|ref|YP_004005394.1| integral membrane protein [Rhodococcus equi 103S]
 gi|311887397|emb|CBH46709.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=326

 Score =  125 bits (315),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 77/151 (51%), Positives = 108/151 (72%), Gaps = 6/151 (3%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTV  R  +VRR  R    +++  L+VLA+ AS  L+F++ V+LL++ +++ALWAA  GA
Sbjct  1    MTVPGRAKQVRRNRRSASQMIVAGLVVLAVVASLLLIFSESVQLLRVGLVVALWAATLGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
                 YRR+S +D+A+VRDL+ VY+LQL+REI+ARREYEL +E ++R EL +E     A+
Sbjct  61   IAMTKYRRESALDKAKVRDLQKVYELQLEREITARREYELGVEVRVRGELGAE-----AE  115

Query  121  EVAALRAELAALRTSLEILFDADL-EHRPAL  150
             +AALR ELAALR +LE+LFD  L E R AL
Sbjct  116  TIAALREELAALRKNLEVLFDGRLPEDRVAL  146


>gi|226304120|ref|YP_002764078.1| hypothetical protein RER_06310 [Rhodococcus erythropolis PR4]
 gi|226183235|dbj|BAH31339.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=361

 Score =  118 bits (296),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 70/144 (49%), Positives = 101/144 (71%), Gaps = 5/144 (3%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MT   R    RR  R    +++ ALL LA+ AS  L+F++ V+LL++ +++ALWAA  GA
Sbjct  1    MTNSGRSKSARRSKRSASQMIIAALLALAVIASLFLIFSNSVQLLRVGLVVALWAATLGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
                 YRR+S +D+A+V DL+ VY+LQL+REISARREYEL++E ++RRE+ ++     A+
Sbjct  61   IAMTKYRRESALDKAKVADLQTVYELQLEREISARREYELSVEGRVRREVTAD-----AE  115

Query  121  EVAALRAELAALRTSLEILFDADL  144
            E+A LRAEL ALR +LE LF+  L
Sbjct  116  ELAGLRAELVALRRNLEALFEGGL  139


>gi|325675041|ref|ZP_08154728.1| hypothetical protein HMPREF0724_12510 [Rhodococcus equi ATCC 
33707]
 gi|325554627|gb|EGD24302.1| hypothetical protein HMPREF0724_12510 [Rhodococcus equi ATCC 
33707]
Length=303

 Score =  118 bits (295),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 63/116 (55%), Positives = 88/116 (76%), Gaps = 6/116 (5%)

Query  36   LVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRDLKLVYDLQLDREISAR  95
            L+F++ V+LL++ +++ALWAA  GA     YRR+S +D+A+VRDL+ VY+LQL+REI+AR
Sbjct  17   LIFSESVQLLRVGLVVALWAATLGAIAMTKYRRESALDKAKVRDLQKVYELQLEREITAR  76

Query  96   REYELTLESQLRRELASELRAPAADEVAALRAELAALRTSLEILFDADL-EHRPAL  150
            REYEL +E ++R EL +E     A+ +AALR ELAALR +LE+LFD  L E R AL
Sbjct  77   REYELGVEVRVRGELGAE-----AETIAALREELAALRKNLEVLFDGRLPEDRVAL  127


>gi|333917995|ref|YP_004491576.1| hypothetical protein AS9A_0317 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333480216|gb|AEF38776.1| hypothetical protein AS9A_0317 [Amycolicicoccus subflavus DQS3-9A1]
Length=228

 Score =  117 bits (292),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 63/138 (46%), Positives = 97/138 (71%), Gaps = 0/138 (0%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGA  60
            MTV  +    RR  ++    L+ AL +LAI AS  LV ++ VE L++ ++ ALWAA  GA
Sbjct  1    MTVQGQPRVRRRRRQKSNSALIVALFLLAIVASIFLVASNSVETLRIGIVAALWAAFLGA  60

Query  61   FVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAAD  120
                 YR++++ D+A+VRDL++VY++QL RE++ARR +ELTLES++RREL +E+R+  + 
Sbjct  61   LAVTKYRKEAEADRAKVRDLRMVYEMQLSREVAARRRHELTLESRIRRELDAEVRSDTSQ  120

Query  121  EVAALRAELAALRTSLEI  138
            ++AA+  EL+ALR  LE 
Sbjct  121  QLAAVHRELSALRGHLEF  138


>gi|229494569|ref|ZP_04388332.1| putative conserved transmembrane protein rich in alanine [Rhodococcus 
erythropolis SK121]
 gi|229318931|gb|EEN84789.1| putative conserved transmembrane protein rich in alanine [Rhodococcus 
erythropolis SK121]
Length=354

 Score =  115 bits (289),  Expect = 9e-24, Method: Compositional matrix adjust.
 Identities = 57/109 (53%), Positives = 84/109 (78%), Gaps = 5/109 (4%)

Query  36   LVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRDLKLVYDLQLDREISAR  95
            L+F++ V+LL++ +++ALWAA  GA     YRR+S +D+A+V DL+ VY+LQL+REISAR
Sbjct  17   LIFSNSVQLLRVGLVVALWAATLGAIAMTKYRRESALDKAKVADLQTVYELQLEREISAR  76

Query  96   REYELTLESQLRRELASELRAPAADEVAALRAELAALRTSLEILFDADL  144
            REYEL++E ++RRE+ ++     A+E+A LRAEL ALR +LE LF+  L
Sbjct  77   REYELSVEGRVRREVTAD-----AEELAGLRAELVALRRNLEALFEGGL  120


>gi|296392861|ref|YP_003657745.1| hypothetical protein Srot_0427 [Segniliparus rotundus DSM 44985]
 gi|296180008|gb|ADG96914.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=452

 Score =  115 bits (287),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 66/155 (43%), Positives = 97/155 (63%), Gaps = 9/155 (5%)

Query  11   RRGGRRPGWVLLTA---LLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGAFVSVLYR  67
            RR   R G  L  A     V A+GAS A+V+T    L++  ++ ALWAA+  AF++   R
Sbjct  9    RRKASRKGATLSVAYALCFVFAVGASVAVVYTGNDMLMRFGLVFALWAALGWAFIADQSR  68

Query  68   RQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRA  127
            R++++  A+  D KL+YDLQL+REI+AR  YEL+LE +LRR+L +E  +     +A L+ 
Sbjct  69   RKAELVSAKASDYKLIYDLQLEREIAARHHYELSLEGELRRQLTAEADSATHSALAELQQ  128

Query  128  ELAALRTSLEILFDADLEH-RPALGTVEKEARAAR  161
            ++A LR  L+ L D DLE+ +PAL     +ARA R
Sbjct  129  QVALLRGQLQELLDQDLEYDQPAL-----KARATR  158


>gi|302530782|ref|ZP_07283124.1| predicted protein [Streptomyces sp. AA4]
 gi|302439677|gb|EFL11493.1| predicted protein [Streptomyces sp. AA4]
Length=626

 Score =  112 bits (280),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 60/131 (46%), Positives = 90/131 (69%), Gaps = 4/131 (3%)

Query  14   GRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVD  73
            GRRPG   L   L+LA+GA+ ALV +D +  L+L ++ ALWAA+ GAF++V  R+ +   
Sbjct  10   GRRPGRPWLVVGLLLAVGATLALVLSDDLRYLRLGIVAALWAALIGAFLAVRARKNAAHS  69

Query  74   QARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRAELAALR  133
            +  V + + VY+L+L+REI+ARREYEL LE++ R    ++ R    +E+ ALRAE+AALR
Sbjct  70   EDAVAEAQAVYELELEREIAARREYELELETEAREAAQAQSR----EELDALRAEVAALR  125

Query  134  TSLEILFDADL  144
             SL+ LF  ++
Sbjct  126  ESLQSLFGGEV  136


>gi|343924372|ref|ZP_08763922.1| hypothetical protein GOALK_015_00180 [Gordonia alkanivorans NBRC 
16433]
 gi|343765704|dbj|GAA10848.1| hypothetical protein GOALK_015_00180 [Gordonia alkanivorans NBRC 
16433]
Length=389

 Score =  108 bits (270),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 62/132 (47%), Positives = 94/132 (72%), Gaps = 7/132 (5%)

Query  36   LVFTDRVELL-KLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRDLKLVYDLQLDREISA  94
            +VFTDR+ +L  LAV+ ALWAAV GA +   +RRQ++  +A+ RDL+LVY+LQL+REI+A
Sbjct  37   MVFTDRLSILGSLAVIAALWAAVIGAILVTKFRRQAESAEAKSRDLRLVYELQLEREIAA  96

Query  95   RREYELTLESQLRRELASELRAPAADEVAALRAELAALRTSLEILFDADL-EHRPALGTV  153
            RR+YEL +E+ +R+E+ +E    + +E++ L+A++ ALR+SLE+L    L + R AL + 
Sbjct  97   RRQYELDVETTIRKEITAE----SNEELSELKAQVLALRSSLEMLLGEPLPDQRAALSS-  151

Query  154  EKEARAARALDG  165
            EK    A  L G
Sbjct  152  EKMRELASGLSG  163


>gi|300790545|ref|YP_003770836.1| hypothetical protein AMED_8741 [Amycolatopsis mediterranei U32]
 gi|299800059|gb|ADJ50434.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length=808

 Score =  107 bits (268),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 59/131 (46%), Positives = 88/131 (68%), Gaps = 4/131 (3%)

Query  14   GRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVD  73
            GR  G   L    VLAIGA+ ALV +D +  L+L ++ ALWAA+ GAF++V YR+ +   
Sbjct  10   GRLLGRPWLVVGFVLAIGATLALVLSDDLRYLRLGIVAALWAALIGAFLAVKYRKSAAQS  69

Query  74   QARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRAELAALR  133
            +  V + + VY+L+L+REI+ARREYEL +E++ R    S+ R    +E+ ALRAE++ALR
Sbjct  70   EDAVAEAQAVYELELEREIAARREYELEMEAENRTAADSKGR----EELEALRAEVSALR  125

Query  134  TSLEILFDADL  144
             SL+ LF  ++
Sbjct  126  DSLQSLFGGEV  136


>gi|262203866|ref|YP_003275074.1| hypothetical protein Gbro_4011 [Gordonia bronchialis DSM 43247]
 gi|262087213|gb|ACY23181.1| hypothetical protein Gbro_4011 [Gordonia bronchialis DSM 43247]
Length=456

 Score =  107 bits (267),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 68/141 (49%), Positives = 99/141 (71%), Gaps = 5/141 (3%)

Query  1    MTVLSRGARVRRGGRRPGWVLLTALLVLAIGASSALVFTDRVELL-KLAVLLALWAAVAG  59
             T   R A  RR GR     LL  L+VLA+ AS  +VFTD + +   LAV+ ALWAAV G
Sbjct  2    TTSNGRSADSRRSGRSVSQWLLGLLIVLALAASILMVFTDSLTITGSLAVIAALWAAVIG  61

Query  60   AFVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAA  119
            A +   +RRQ++  +A+ RDL+LVY+LQL+REI+ARR+YEL +E+ +R+E+++E    A 
Sbjct  62   AILVTKFRRQAESAEAKSRDLRLVYELQLEREIAARRQYELDVETTIRKEVSAE----AN  117

Query  120  DEVAALRAELAALRTSLEILF  140
            +E+A L+A++ ALR+SLE+L 
Sbjct  118  EELAELKAQVLALRSSLELLI  138


>gi|326384081|ref|ZP_08205764.1| hypothetical protein SCNU_14149 [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326197241|gb|EGD54432.1| hypothetical protein SCNU_14149 [Gordonia neofelifaecis NRRL 
B-59395]
Length=323

 Score =  107 bits (267),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 65/136 (48%), Positives = 91/136 (67%), Gaps = 6/136 (4%)

Query  18   GWVLLTALLVLAIGASSALVFTDRVEL-LKLAVLLALWAAVAGAFVSVLYRRQSDVDQAR  76
            G  L+   +VLAI AS  ++F +   +   LAV+ ALWAAV GA +   YRRQ+DV ++R
Sbjct  41   GQWLIGLFVVLAIVASLLMIFGNDFSVPATLAVIAALWAAVIGAVLVTKYRRQADVAESR  100

Query  77   VRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRAELAALRTSL  136
             RDL+LVY+LQL+REI+ARR+YE  +ES +R+E+ASE       E+  L+A++ ALR SL
Sbjct  101  SRDLRLVYELQLEREIAARRQYESDVESAIRQEVASESNV----ELEELKAQVLALRASL  156

Query  137  EILFDADL-EHRPALG  151
            E L    L + R A+G
Sbjct  157  EQLLGTPLPDMRAAIG  172


>gi|296138301|ref|YP_003645544.1| hypothetical protein Tpau_0565 [Tsukamurella paurometabola DSM 
20162]
 gi|296026435|gb|ADG77205.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 
20162]
Length=381

 Score = 96.3 bits (238),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 128/419 (31%), Positives = 178/419 (43%), Gaps = 81/419 (19%)

Query  11   RRGGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQS  70
            RR     G  +L A++VLA+  +   +F+D      LA++L +W  V  AF+  + R   
Sbjct  12   RRSNAGAGQWMLGAVIVLAVAGTGMWIFSDDKRWGLLALILLVWGLVIAAFL--IARNAR  69

Query  71   DVDQARVRD--LKLVYDLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRAE  128
            D+  A  ++  LK VY+LQL+REISARREYEL LE  LR    SELR  + +E+ AL+AE
Sbjct  70   DIRSAESKESGLKAVYELQLEREISARREYELQLEHDLR----SELRHESNEELTALKAE  125

Query  129  LAALRTSLEILFDADLEHRPALGTVEKEARAA---RALDGESPPADWVSSDRVMAVRGGD  185
            + ALR +LE L   D      LG    E  AA   RA+D +   + +   DR  A +   
Sbjct  126  VLALRANLEELLGRD------LGPSYTELYAAAEQRAIDAQRAKSVFEDDDRFRAQQDFA  179

Query  186  GASRTDEASIIDVPEVGVPPVSGGPRHYEAPPPPQPEPLFEPRHRPPPLPPQQERPVWQP  245
            G           VP    PPV     +Y A       P F         P   E+PV  P
Sbjct  180  G-----------VP----PPVPDVDSYYGAASAVNDVPDF---------PAAAEQPVDAP  215

Query  246  VTSHGQWLPAE-TPGSQWASVEPETTPAAPPPGRRRRARHASPADQAY-----NPPAYVE  299
               +    P E TP + + +V    +PAA PP        A P D  +         +V 
Sbjct  216  SAPN---RPQEDTPTAVFEAVVDPQSPAAAPP------VDAEPVDVEHIDHIDGDEPFVP  266

Query  300  LAAQYGESGRRSRHSAEHRDHDIGGSGAGTGERPPSPPMAPPPPAEPTRRHRT-------  352
            LA Q   SG R          D          +   P  AP  PA   + H         
Sbjct  267  LAPQ---SGYRPPFPPRRFTPDAAQQQPPQFAQYAPPERAPQQPAPADQVHSIPTVPPFP  323

Query  353  ----------ADTPPDDSGGLHARDPLTG----GQSVADLMARLQVESTGGGRRRRRGE  397
                       +T P+D   +H +D   G    G +VA+L+AR+  ++   G RRR+ E
Sbjct  324  AAEPTPAAPLQETRPEDD-DVHEQDSTRGQHSSGSTVAELIARMNADTERSGGRRRKPE  381


>gi|54022368|ref|YP_116610.1| hypothetical protein nfa4040 [Nocardia farcinica IFM 10152]
 gi|54013876|dbj|BAD55246.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=548

 Score = 92.0 bits (227),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 63/134 (48%), Positives = 95/134 (71%), Gaps = 6/134 (4%)

Query  18   GWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARV  77
            G   +  L++L + AS  L+F++ V ++++ ++ ALWAA  GA  +  YR+ + VD+A+V
Sbjct  18   GRFFIGTLILLGLVASVFLIFSNSVHMIRVGMVAALWAAAIGAMAATKYRKDAAVDKAKV  77

Query  78   RDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRAELAALRTSLE  137
            RDL+ VY+LQL+REI+ARREYEL +E+++R E+ ++       E+AALRAEL+ LR SL+
Sbjct  78   RDLQTVYELQLEREITARREYELGVEARVREEVGADAA-----ELAALRAELSVLRQSLQ  132

Query  138  ILFDADL-EHRPAL  150
             LFD DL   RPAL
Sbjct  133  RLFDGDLPMDRPAL  146


>gi|256374474|ref|YP_003098134.1| hypothetical protein Amir_0319 [Actinosynnema mirum DSM 43827]
 gi|255918777|gb|ACU34288.1| hypothetical protein Amir_0319 [Actinosynnema mirum DSM 43827]
Length=556

 Score = 90.9 bits (224),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 64/163 (40%), Positives = 95/163 (59%), Gaps = 10/163 (6%)

Query  39   TDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARREY  98
            +D    L+LAV+ ALWAA+ GAF++  YRRQ    +  V DL+ VY+L+L+RE++ARRE+
Sbjct  41   SDNARWLRLAVVSALWAALVGAFLAARYRRQVADREDEVADLQNVYELELEREVAARREF  100

Query  99   ELTLESQLRRELASELRAPAADEVAALRAELAALRTSLEILFDAD-LEHRPALGTVEKEA  157
            EL LE++  R+   +    A D++ ALR EL ALR +LE L   + L  R AL     EA
Sbjct  101  ELELETEAHRKAQED----AKDDLDALRGELRALRENLEALLGGEVLVERVAL---RAEA  153

Query  158  RAARALDGES--PPADWVSSDRVMAVRGGDGASRTDEASIIDV  198
               R+L  +S    +  VS+     V     A + D+ S++D+
Sbjct  154  TRMRSLGDQSRLDQSRLVSAMNEHRVITSGKAKKDDQPSVVDL  196


>gi|340532232|gb|AEK47437.1| hypothetical protein RAM_44850 [Amycolatopsis mediterranei S699]
Length=776

 Score = 90.9 bits (224),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 46/108 (43%), Positives = 75/108 (70%), Gaps = 4/108 (3%)

Query  37   VFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARR  96
            + +D +  L+L ++ ALWAA+ GAF++V YR+ +   +  V + + VY+L+L+REI+ARR
Sbjct  1    MLSDDLRYLRLGIVAALWAALIGAFLAVKYRKSAAQSEDAVAEAQAVYELELEREIAARR  60

Query  97   EYELTLESQLRRELASELRAPAADEVAALRAELAALRTSLEILFDADL  144
            EYEL +E++ R    S+ R    +E+ ALRAE++ALR SL+ LF  ++
Sbjct  61   EYELEMEAENRTAADSKGR----EELEALRAEVSALRDSLQSLFGGEV  104


>gi|317507810|ref|ZP_07965511.1| hypothetical protein HMPREF9336_01883 [Segniliparus rugosus ATCC 
BAA-974]
 gi|316253852|gb|EFV13221.1| hypothetical protein HMPREF9336_01883 [Segniliparus rugosus ATCC 
BAA-974]
Length=487

 Score = 84.3 bits (207),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 52/126 (42%), Positives = 82/126 (66%), Gaps = 6/126 (4%)

Query  37   VFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDVDQARVRDLKLVYDLQLDREISARR  96
            ++T     ++   + ALWAA+  AF++   RR++++  A+  D KL+YDLQL+REI+AR 
Sbjct  27   IYTGNETWMRFGFVAALWAALGWAFIADQSRRKAELVSAKASDYKLIYDLQLEREIAARH  86

Query  97   EYELTLESQLRRELASELRAPAADEVAALRAELAALRTSLEILFDADLEH-RPALGTVEK  155
             YEL+LE++LRR+L +E  +     +A L+ ++A LR  L+ L D DLE+ +PAL     
Sbjct  87   HYELSLENELRRQLTAENDSTTHSILAELQQQVAVLRGQLQELLDQDLEYDQPAL-----  141

Query  156  EARAAR  161
            +ARA R
Sbjct  142  KARATR  147


>gi|237786209|ref|YP_002906914.1| hypothetical protein ckrop_1646 [Corynebacterium kroppenstedtii 
DSM 44385]
 gi|237759121|gb|ACR18371.1| hypothetical protein ckrop_1646 [Corynebacterium kroppenstedtii 
DSM 44385]
Length=570

 Score = 84.3 bits (207),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 54/164 (33%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query  13   GGRRPGWVLLTALLVLAIGASSALVFTDRVELLKLAVLLALWAAVAGAFVSVLYRRQSDV  72
            G  +  +  +  +LV A+ A+  ++FTD     K+AVL ALWAA+ G       R+Q D 
Sbjct  38   GSGKFSFAAIVVMLVFAVVATILMLFTDSETWTKIAVLCALWAAIVGCIAVARLRKQVDN  97

Query  73   DQARVRDLKLVYDLQLDREISARREYELTLESQLRRELASELRAPAADEVAALRAELAAL  132
             Q    +L+ ++  +L+RE++  RE EL LE      L  + +   AD    +RAEL  L
Sbjct  98   QQRDTDNLERLHQAELERELATHREQELILEQNYYDSLQEQEQNTLAD----IRAELTVL  153

Query  133  RTSLEILFDADLE-HRPALGTVEKEARAARALDGESPPADWVSS  175
            R +L  +   DL+  R AL     +A A R L+ E    D  S+
Sbjct  154  RENLSAMMGTDLDTERTAL-----KAEAQRILELERDSKDSSST  192



Lambda     K      H
   0.315    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 779602889160


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40