BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3611
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610747|ref|NP_218128.1| hypothetical protein Rv3611 [Mycoba... 404 3e-111
gi|289747447|ref|ZP_06506825.1| conserved hypothetical protein [... 393 1e-107
gi|339296428|gb|AEJ48539.1| hypothetical protein CCDC5079_3350 [... 392 2e-107
gi|344221444|gb|AEN02075.1| hypothetical protein MTCTRI2_3676 [M... 391 4e-107
gi|31794787|ref|NP_857280.1| hypothetical protein Mb3641 [Mycoba... 326 1e-87
gi|289572265|ref|ZP_06452492.1| arginine and proline rich protei... 326 2e-87
gi|308374929|ref|ZP_07442120.2| hypothetical protein TMGG_01149 ... 188 5e-46
gi|308369174|ref|ZP_07416833.2| hypothetical protein TMBG_02148 ... 165 4e-39
gi|308232513|ref|ZP_07664104.1| hypothetical protein TMAG_00101 ... 163 1e-38
gi|308372686|ref|ZP_07667434.1| hypothetical protein TMEG_00102 ... 138 5e-31
gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus ... 57.0 2e-06
gi|308369173|ref|ZP_07666672.1| hypothetical protein TMBG_02147 ... 55.1 7e-06
gi|71415646|ref|XP_809883.1| kinetoplast DNA-associated protein ... 49.7 3e-04
gi|344253751|gb|EGW09855.1| BUD13-like [Cricetulus griseus] 48.1 8e-04
gi|71018381|ref|XP_759421.1| hypothetical protein UM03274.1 [Ust... 45.4 0.006
gi|344289012|ref|XP_003416240.1| PREDICTED: hypothetical protein... 43.5 0.021
gi|294993983|ref|ZP_06799674.1| hypothetical protein Mtub2_05593... 40.0 0.22
gi|73965441|ref|XP_853889.1| PREDICTED: similar to CG14692-PA [C... 39.3 0.42
>gi|15610747|ref|NP_218128.1| hypothetical protein Rv3611 [Mycobacterium tuberculosis H37Rv]
gi|121639530|ref|YP_979754.1| hypothetical protein BCG_3675 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|2113965|emb|CAB08955.1| HYPOTHETICAL ARGININE AND PROLINE RICH PROTEIN [Mycobacterium
tuberculosis H37Rv]
gi|121495178|emb|CAL73664.1| Hypothetical arginine and proline rich protein [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|341603551|emb|CCC66232.1| hypothetical arginine and proline rich protein [Mycobacterium
bovis BCG str. Moreau RDJ]
Length=217
Score = 404 bits (1039), Expect = 3e-111, Method: Compositional matrix adjust.
Identities = 216/217 (99%), Positives = 217/217 (100%), Gaps = 0/217 (0%)
Query 1 VAIANPAEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRK 60
+AIANPAEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRK
Sbjct 1 MAIANPAEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRK 60
Query 61 PRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEP 120
PRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEP
Sbjct 61 PRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEP 120
Query 121 GAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGP 180
GAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGP
Sbjct 121 GAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGP 180
Query 181 QNGPRRSQAITPEPGAAGRHWLDQRPVVPDGVGKSDS 217
QNGPRRSQAITPEPGAAGRHWLDQRPVVPDGVGKSDS
Sbjct 181 QNGPRRSQAITPEPGAAGRHWLDQRPVVPDGVGKSDS 217
>gi|289747447|ref|ZP_06506825.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289687975|gb|EFD55463.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=213
Score = 393 bits (1009), Expect = 1e-107, Method: Compositional matrix adjust.
Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)
Query 8 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC 67
EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC
Sbjct 4 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC 63
Query 68 GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH 127
GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH
Sbjct 64 GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH 123
Query 128 QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRS 187
QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRS
Sbjct 124 QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRS 183
Query 188 QAITPEPGAAGRHWLDQRPVVPDGVGKSDS 217
QAITPEPGAAGRHWLDQRPVVPDGVGKSDS
Sbjct 184 QAITPEPGAAGRHWLDQRPVVPDGVGKSDS 213
>gi|339296428|gb|AEJ48539.1| hypothetical protein CCDC5079_3350 [Mycobacterium tuberculosis
CCDC5079]
gi|339300030|gb|AEJ52140.1| hypothetical protein CCDC5180_3303 [Mycobacterium tuberculosis
CCDC5180]
Length=291
Score = 392 bits (1007), Expect = 2e-107, Method: Compositional matrix adjust.
Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)
Query 8 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC 67
EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC
Sbjct 82 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC 141
Query 68 GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH 127
GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH
Sbjct 142 GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH 201
Query 128 QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRS 187
QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRS
Sbjct 202 QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRS 261
Query 188 QAITPEPGAAGRHWLDQRPVVPDGVGKSDS 217
QAITPEPGAAGRHWLDQRPVVPDGVGKSDS
Sbjct 262 QAITPEPGAAGRHWLDQRPVVPDGVGKSDS 291
Score = 365 bits (937), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 197/200 (99%), Positives = 200/200 (100%), Gaps = 0/200 (0%)
Query 1 VAIANPAEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRK 60
+AIANPAEPGAAGRHHQPRGDRKPRAWRQCGPQ+GPRRSQAITPEPGAAGRHHQPRGDRK
Sbjct 1 MAIANPAEPGAAGRHHQPRGDRKPRAWRQCGPQSGPRRSQAITPEPGAAGRHHQPRGDRK 60
Query 61 PRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEP 120
PRAWRQCGPQ+GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEP
Sbjct 61 PRAWRQCGPQSGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEP 120
Query 121 GAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGP 180
GAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGP
Sbjct 121 GAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGP 180
Query 181 QNGPRRSQAITPEPGAAGRH 200
QNGPRRSQAITPEPGAAGRH
Sbjct 181 QNGPRRSQAITPEPGAAGRH 200
>gi|344221444|gb|AEN02075.1| hypothetical protein MTCTRI2_3676 [Mycobacterium tuberculosis
CTRI-2]
Length=254
Score = 391 bits (1004), Expect = 4e-107, Method: Compositional matrix adjust.
Identities = 209/210 (99%), Positives = 210/210 (100%), Gaps = 0/210 (0%)
Query 8 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC 67
EPGAAGRHHQPRGDRKPRAWRQCGPQ+GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC
Sbjct 45 EPGAAGRHHQPRGDRKPRAWRQCGPQSGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC 104
Query 68 GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH 127
GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH
Sbjct 105 GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH 164
Query 128 QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRS 187
QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRS
Sbjct 165 QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRS 224
Query 188 QAITPEPGAAGRHWLDQRPVVPDGVGKSDS 217
QAITPEPGAAGRHWLDQRPVVPDGVGKSDS
Sbjct 225 QAITPEPGAAGRHWLDQRPVVPDGVGKSDS 254
>gi|31794787|ref|NP_857280.1| hypothetical protein Mb3641 [Mycobacterium bovis AF2122/97]
gi|167968210|ref|ZP_02550487.1| hypothetical protein MtubH3_09329 [Mycobacterium tuberculosis
H37Ra]
gi|224992027|ref|YP_002646716.1| hypothetical arginine and proline rich protein [Mycobacterium
bovis BCG str. Tokyo 172]
gi|339633610|ref|YP_004725252.1| arginine and proline rich protein [Mycobacterium africanum GM041182]
gi|31620384|emb|CAD95827.1| HYPOTHETICAL ARGININE AND PROLINE RICH PROTEIN [Mycobacterium
bovis AF2122/97]
gi|224775142|dbj|BAH27948.1| hypothetical arginine and proline rich protein [Mycobacterium
bovis BCG str. Tokyo 172]
gi|339332966|emb|CCC28693.1| putative arginine and proline rich protein [Mycobacterium africanum
GM041182]
Length=180
Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 173/173 (100%), Positives = 173/173 (100%), Gaps = 0/173 (0%)
Query 45 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC 104
EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC
Sbjct 8 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC 67
Query 105 GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH 164
GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH
Sbjct 68 GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH 127
Query 165 QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHWLDQRPVVPDGVGKSDS 217
QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHWLDQRPVVPDGVGKSDS
Sbjct 128 QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHWLDQRPVVPDGVGKSDS 180
>gi|289572265|ref|ZP_06452492.1| arginine and proline rich protein [Mycobacterium tuberculosis
K85]
gi|289536696|gb|EFD41274.1| arginine and proline rich protein [Mycobacterium tuberculosis
K85]
Length=198
Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 172/173 (99%), Positives = 173/173 (100%), Gaps = 0/173 (0%)
Query 45 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC 104
EPGAAGRHHQPRGDRKPRAWRQCGPQ+GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC
Sbjct 26 EPGAAGRHHQPRGDRKPRAWRQCGPQSGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC 85
Query 105 GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH 164
GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH
Sbjct 86 GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH 145
Query 165 QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHWLDQRPVVPDGVGKSDS 217
QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHWLDQRPVVPDGVGKSDS
Sbjct 146 QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHWLDQRPVVPDGVGKSDS 198
>gi|308374929|ref|ZP_07442120.2| hypothetical protein TMGG_01149 [Mycobacterium tuberculosis SUMu007]
gi|308348002|gb|EFP36853.1| hypothetical protein TMGG_01149 [Mycobacterium tuberculosis SUMu007]
Length=98
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/98 (100%), Positives = 98/98 (100%), Gaps = 0/98 (0%)
Query 120 PGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCG 179
PGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCG
Sbjct 1 PGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCG 60
Query 180 PQNGPRRSQAITPEPGAAGRHWLDQRPVVPDGVGKSDS 217
PQNGPRRSQAITPEPGAAGRHWLDQRPVVPDGVGKSDS
Sbjct 61 PQNGPRRSQAITPEPGAAGRHWLDQRPVVPDGVGKSDS 98
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)
Query 9 PGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCG 68
PGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCG
Sbjct 1 PGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCG 60
Query 69 PQNGPRRSQAITPEPGAAGRH 89
PQNGPRRSQAITPEPGAAGRH
Sbjct 61 PQNGPRRSQAITPEPGAAGRH 81
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)
Query 46 PGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCG 105
PGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCG
Sbjct 1 PGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCG 60
Query 106 PQNGPRRSQAITPEPGAAGRH 126
PQNGPRRSQAITPEPGAAGRH
Sbjct 61 PQNGPRRSQAITPEPGAAGRH 81
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/45 (100%), Positives = 45/45 (100%), Gaps = 0/45 (0%)
Query 8 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRH 52
EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRH
Sbjct 37 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRH 81
>gi|308369174|ref|ZP_07416833.2| hypothetical protein TMBG_02148 [Mycobacterium tuberculosis SUMu002]
gi|308328464|gb|EFP17315.1| hypothetical protein TMBG_02148 [Mycobacterium tuberculosis SUMu002]
Length=87
Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/87 (98%), Positives = 85/87 (98%), Gaps = 0/87 (0%)
Query 131 GDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAI 190
GDRKP AWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGP NGPRRSQAI
Sbjct 1 GDRKPAAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPLNGPRRSQAI 60
Query 191 TPEPGAAGRHWLDQRPVVPDGVGKSDS 217
TPEPGAAGRHWLDQRPVVPDGVGKSDS
Sbjct 61 TPEPGAAGRHWLDQRPVVPDGVGKSDS 87
Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/70 (98%), Positives = 68/70 (98%), Gaps = 0/70 (0%)
Query 20 GDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAI 79
GDRKP AWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGP NGPRRSQAI
Sbjct 1 GDRKPAAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPLNGPRRSQAI 60
Query 80 TPEPGAAGRH 89
TPEPGAAGRH
Sbjct 61 TPEPGAAGRH 70
Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/70 (98%), Positives = 68/70 (98%), Gaps = 0/70 (0%)
Query 57 GDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAI 116
GDRKP AWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGP NGPRRSQAI
Sbjct 1 GDRKPAAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPLNGPRRSQAI 60
Query 117 TPEPGAAGRH 126
TPEPGAAGRH
Sbjct 61 TPEPGAAGRH 70
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/45 (98%), Positives = 44/45 (98%), Gaps = 0/45 (0%)
Query 8 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRH 52
EPGAAGRHHQPRGDRKPRAWRQCGP NGPRRSQAITPEPGAAGRH
Sbjct 26 EPGAAGRHHQPRGDRKPRAWRQCGPLNGPRRSQAITPEPGAAGRH 70
>gi|308232513|ref|ZP_07664104.1| hypothetical protein TMAG_00101 [Mycobacterium tuberculosis SUMu001]
gi|308376174|ref|ZP_07668210.1| hypothetical protein TMHG_02671 [Mycobacterium tuberculosis SUMu008]
gi|308213717|gb|EFO73116.1| hypothetical protein TMAG_00101 [Mycobacterium tuberculosis SUMu001]
gi|308351943|gb|EFP40794.1| hypothetical protein TMHG_02671 [Mycobacterium tuberculosis SUMu008]
Length=84
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)
Query 134 KPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPE 193
KPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPE
Sbjct 1 KPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPE 60
Query 194 PGAAGRHWLDQRPVVPDGVGKSDS 217
PGAAGRHWLDQRPVVPDGVGKSDS
Sbjct 61 PGAAGRHWLDQRPVVPDGVGKSDS 84
Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/67 (100%), Positives = 67/67 (100%), Gaps = 0/67 (0%)
Query 23 KPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPE 82
KPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPE
Sbjct 1 KPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPE 60
Query 83 PGAAGRH 89
PGAAGRH
Sbjct 61 PGAAGRH 67
Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/67 (100%), Positives = 67/67 (100%), Gaps = 0/67 (0%)
Query 60 KPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPE 119
KPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPE
Sbjct 1 KPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPE 60
Query 120 PGAAGRH 126
PGAAGRH
Sbjct 61 PGAAGRH 67
Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/45 (100%), Positives = 45/45 (100%), Gaps = 0/45 (0%)
Query 8 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRH 52
EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRH
Sbjct 23 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRH 67
>gi|308372686|ref|ZP_07667434.1| hypothetical protein TMEG_00102 [Mycobacterium tuberculosis SUMu005]
gi|308340214|gb|EFP29065.1| hypothetical protein TMEG_00102 [Mycobacterium tuberculosis SUMu005]
Length=72
Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/72 (99%), Positives = 71/72 (99%), Gaps = 0/72 (0%)
Query 146 GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHWLDQR 205
GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGP NGPRRSQAITPEPGAAGRHWLDQR
Sbjct 1 GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPLNGPRRSQAITPEPGAAGRHWLDQR 60
Query 206 PVVPDGVGKSDS 217
PVVPDGVGKSDS
Sbjct 61 PVVPDGVGKSDS 72
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/55 (99%), Positives = 54/55 (99%), Gaps = 0/55 (0%)
Query 35 GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRH 89
GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGP NGPRRSQAITPEPGAAGRH
Sbjct 1 GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPLNGPRRSQAITPEPGAAGRH 55
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/55 (99%), Positives = 54/55 (99%), Gaps = 0/55 (0%)
Query 72 GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRH 126
GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGP NGPRRSQAITPEPGAAGRH
Sbjct 1 GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPLNGPRRSQAITPEPGAAGRH 55
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/45 (98%), Positives = 44/45 (98%), Gaps = 0/45 (0%)
Query 8 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRH 52
EPGAAGRHHQPRGDRKPRAWRQCGP NGPRRSQAITPEPGAAGRH
Sbjct 11 EPGAAGRHHQPRGDRKPRAWRQCGPLNGPRRSQAITPEPGAAGRH 55
>gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT]
gi|112823811|gb|ABI25900.1| conserved hypothetical protein [Haemophilus somnus 129PT]
Length=2914
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 70/226 (31%), Positives = 81/226 (36%), Gaps = 46/226 (20%)
Query 7 AEPGAAGRHHQP--RGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAW 64
EPG G P +GD P + GPR Q + PGA G P+GD P A
Sbjct 1426 GEPGPQGPQGLPGAKGDTGPAGPQGIPGPQGPRGEQGLPGAPGAQG----PKGD--PGAP 1479
Query 65 RQCGPQN--------------GPRRSQAITPEPGAAGRHHQP--RGDRKPRAWRQCGPQN 108
GPQ GP Q EPG G P +GD P +
Sbjct 1480 GPVGPQGATGPAGKDGETGPMGPTGPQGPQGEPGPQGPQGLPGAKGDTGPAGPQGIPGPQ 1539
Query 109 GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQN--------------GPRRSQAIT 154
GPR Q + PGA G P+GD P A GPQ GP Q
Sbjct 1540 GPRGEQGLPGAPGAQG----PKGD--PGAPGPVGPQGATGPAGKDGETGPMGPTGPQGPQ 1593
Query 155 PEPGAAGRHHQP--RGDRKPRAWRQCGPQNGPRRSQAITPEPGAAG 198
EPG G P +GD P + GPR Q + PGA G
Sbjct 1594 GEPGPQGPQGLPGAKGDTGPAGPQGIPGPQGPRGEQGLPGAPGAQG 1639
Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 65/218 (30%), Positives = 76/218 (35%), Gaps = 46/218 (21%)
Query 7 AEPGAAGRHHQP--RGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAW 64
EPG G P +GD P + GPR Q + PGA G P+GD P A
Sbjct 1594 GEPGPQGPQGLPGAKGDTGPAGPQGIPGPQGPRGEQGLPGAPGAQG----PKGD--PGAP 1647
Query 65 RQCGPQN--------------GPRRSQAITPEPGAAGRHHQP--RGDRKPRAWRQCGPQN 108
GPQ GP Q EPG G P +GD P +
Sbjct 1648 GPVGPQGATGPAGKDGETGPMGPTGPQGPQGEPGPQGPQGLPGAKGDTGPAGPQGIPGPQ 1707
Query 109 GPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQN--------------GPRRSQAIT 154
GPR Q + PG G P+GD P A GPQ GP Q
Sbjct 1708 GPRGEQGLPGAPGPQG----PKGD--PGAPGPVGPQGATGPAGKDGETGPMGPTGPQGPQ 1761
Query 155 PEPGAAGRHHQP--RGDRKPRAWRQCGPQNGPRRSQAI 190
EPG G P +GD P + GPR Q +
Sbjct 1762 GEPGPQGPQGLPGAKGDTGPAGPQGIPGPQGPRGEQGL 1799
Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats.
Identities = 49/174 (29%), Positives = 56/174 (33%), Gaps = 32/174 (18%)
Query 6 PAEPGAAGRHHQPRGDRKPRAWRQCGPQN--------GPRRSQAITPEPGAAGRHHQP-- 55
P PGA G P GP GP Q EPG G P
Sbjct 1632 PGAPGAQGPKGDPGAPGPVGPQGATGPAGKDGETGPMGPTGPQGPQGEPGPQGPQGLPGA 1691
Query 56 RGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQN------- 108
+GD P + GPR Q + PG G P+GD P A GPQ
Sbjct 1692 KGDTGPAGPQGIPGPQGPRGEQGLPGAPGPQG----PKGD--PGAPGPVGPQGATGPAGK 1745
Query 109 -------GPRRSQAITPEPGAAGRHHQP--RGDRKPRAWRQCGPQNGPRRSQAI 153
GP Q EPG G P +GD P + GPR Q +
Sbjct 1746 DGETGPMGPTGPQGPQGEPGPQGPQGLPGAKGDTGPAGPQGIPGPQGPRGEQGL 1799
>gi|308369173|ref|ZP_07666672.1| hypothetical protein TMBG_02147 [Mycobacterium tuberculosis SUMu002]
gi|308328490|gb|EFP17341.1| hypothetical protein TMBG_02147 [Mycobacterium tuberculosis SUMu002]
Length=75
Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/67 (59%), Positives = 40/67 (60%), Gaps = 18/67 (26%)
Query 1 VAIANPAEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRK 60
VAIANPA PG RG G R+S TPEPGAAGRHHQPRGDRK
Sbjct 27 VAIANPA-PGDNAARKTGRG--------------GARQS---TPEPGAAGRHHQPRGDRK 68
Query 61 PRAWRQC 67
PRAWRQC
Sbjct 69 PRAWRQC 75
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/25 (100%), Positives = 25/25 (100%), Gaps = 0/25 (0%)
Query 80 TPEPGAAGRHHQPRGDRKPRAWRQC 104
TPEPGAAGRHHQPRGDRKPRAWRQC
Sbjct 51 TPEPGAAGRHHQPRGDRKPRAWRQC 75
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/25 (100%), Positives = 25/25 (100%), Gaps = 0/25 (0%)
Query 117 TPEPGAAGRHHQPRGDRKPRAWRQC 141
TPEPGAAGRHHQPRGDRKPRAWRQC
Sbjct 51 TPEPGAAGRHHQPRGDRKPRAWRQC 75
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/25 (100%), Positives = 25/25 (100%), Gaps = 0/25 (0%)
Query 154 TPEPGAAGRHHQPRGDRKPRAWRQC 178
TPEPGAAGRHHQPRGDRKPRAWRQC
Sbjct 51 TPEPGAAGRHHQPRGDRKPRAWRQC 75
>gi|71415646|ref|XP_809883.1| kinetoplast DNA-associated protein [Trypanosoma cruzi strain
CL Brener]
gi|70874331|gb|EAN88032.1| kinetoplast DNA-associated protein, putative [Trypanosoma cruzi]
Length=1117
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 46/205 (23%), Positives = 71/205 (35%), Gaps = 14/205 (6%)
Query 7 AEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPG-----------AAGRHHQP 55
AE GAA R H+ + R + + RR + E AA R H+
Sbjct 396 AEEGAARRMHEVAEEEAARRMHEVAEEEAARRMHEVVEEEAARRMHEVAREEAARRMHEV 455
Query 56 RGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQA 115
+ R + + RR + E GAA R H+ + R + + RR
Sbjct 456 AEEEAARRMHEVAEEEAARRMHEVV-EEGAARRMHEVAEEEAARKMHEVAEEEAARRMHE 514
Query 116 ITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAW 175
+ E AA R H+ + R + + RR + E AA R H+ + R
Sbjct 515 VAEEE-AARRMHEVAKEEAARRMHEVAEEEAARRMHEVAREE-AARRMHEVAEEEAARKM 572
Query 176 RQCGPQNGPRRSQAITPEPGAAGRH 200
+ + RR + E A H
Sbjct 573 HEVAKEEAARRMHEVAREEAARRMH 597
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 43/194 (23%), Positives = 70/194 (37%), Gaps = 4/194 (2%)
Query 7 AEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQ 66
AE AA + H+ + R + + RR + E AA R H+ + R +
Sbjct 564 AEEEAARKMHEVAKEEAARRMHEVAREEAARRMHEVVEEE-AARRMHEVAREEAARRMHE 622
Query 67 CGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRH 126
+ RR + E AA R H+ + R + + RR + E AA +
Sbjct 623 VAREEAARRMHEVAKEE-AARRMHEVAREEAARRMHEVVEEEAARRMHEMVEEE-AARKM 680
Query 127 HQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRR 186
H+ + R + + RR + E GAA R H+ + R + + RR
Sbjct 681 HEVAEEEAARKMHEVAEEEAARRMHEVVEE-GAARRMHEVAKEEAARKMHEVAREEAARR 739
Query 187 SQAITPEPGAAGRH 200
+ E A H
Sbjct 740 MHEVAEEEAARRMH 753
Score = 36.6 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 36/163 (23%), Positives = 56/163 (35%), Gaps = 16/163 (9%)
Query 8 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC 67
E AA + H+ + R + + RR + E GAA R H+ + R +
Sbjct 673 EEEAARKMHEVAEEEAARKMHEVAEEEAARRMHEVVEE-GAARRMHEVAKEEAARKMHEV 731
Query 68 GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH 127
+ RR + E AA R H+ + R + + RR + E A H
Sbjct 732 AREEAARRMHEVAEEE-AARRMHEVAKEEAARRMHEVAEEEAARRMHGMAEEEAARKMH- 789
Query 128 QPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDR 170
+ + RR + E AA R H+ G R
Sbjct 790 ------------EVAEEEAARRMHGMAEEE-AARRMHEVEGSR 819
>gi|344253751|gb|EGW09855.1| BUD13-like [Cricetulus griseus]
Length=706
Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/161 (33%), Positives = 68/161 (43%), Gaps = 14/161 (8%)
Query 36 PRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGD 95
PRR TP+P + R H D PR P PRR+ TP+P R H D
Sbjct 124 PRRVHRDTPDPSSPRRAHHDTPDPSPRRTCHDTPDPSPRRAHHDTPDPSPPRRAHHDTPD 183
Query 96 RKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITP 155
PR R P PRR++ TP+P PR R P PR+++ TP
Sbjct 184 PSPRRARNDTPDPSPRRARNDTPDPS-------------PRRARNDTPDPSPRKARHDTP 230
Query 156 EPGAAGRHHQPRGDRKPRAWRQCGPQ-NGPRRSQAITPEPG 195
+P + R D PR R P + PRR++ TP+P
Sbjct 231 DPSPSRRARHDTPDPSPRKARHDTPDPSPPRRARNDTPDPS 271
Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/152 (31%), Positives = 63/152 (42%), Gaps = 14/152 (9%)
Query 8 EPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQC 67
+P + R H D PR P PRR+ TP+P R H D PR R
Sbjct 133 DPSSPRRAHHDTPDPSPRRTCHDTPDPSPRRAHHDTPDPSPPRRAHHDTPDPSPRRARND 192
Query 68 GPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH 127
P PRR++ TP+P PR R P PR+++ TP+P + R
Sbjct 193 TPDPSPRRARNDTPDPS-------------PRRARNDTPDPSPRKARHDTPDPSPSRRAR 239
Query 128 QPRGDRKPRAWRQCGPQ-NGPRRSQAITPEPG 158
D PR R P + PRR++ TP+P
Sbjct 240 HDTPDPSPRKARHDTPDPSPPRRARNDTPDPS 271
>gi|71018381|ref|XP_759421.1| hypothetical protein UM03274.1 [Ustilago maydis 521]
gi|46099028|gb|EAK84261.1| hypothetical protein UM03274.1 [Ustilago maydis 521]
Length=869
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/168 (27%), Positives = 57/168 (34%), Gaps = 17/168 (10%)
Query 7 AEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQ 66
A+ GAAG P GD P + + GAAG P GD+ P +
Sbjct 545 ADNGAAGGDKNPNGDNSSEGDEPV-----PYGDETGDADNGAAGGDKNPSGDKNPNGDKN 599
Query 67 CGPQNGPRRSQAI-TPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGR 125
NG + GAAG P GD P + + GAAG
Sbjct 600 PNGDNGAAGGDKNPNGDNGAAGGDKNPNGDNSSEGDEPV-----PYGDETGDADNGAAGG 654
Query 126 HHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPR 173
P GD+ P + P + + GAAG P GD+ P
Sbjct 655 DKNPSGDKNPNGDKN------PSGDKNPNGDNGAAGGDKNPSGDKNPN 696
Score = 38.5 bits (88), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/171 (26%), Positives = 56/171 (33%), Gaps = 27/171 (15%)
Query 7 AEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQ 66
A+ GAAG P GD+ P + P + + GAAG P GD
Sbjct 456 ADNGAAGGDKNPSGDKNPNGDKN------PSGDKNPNGDNGAAGGDKNPNGDN------- 502
Query 67 CGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRH 126
G G + + GAAG P GD P + + GAAG
Sbjct 503 -GAAGGDKNPNG---DNGAAGGDKNPNGDNSSEGDEPV-----PYGDETGDADNGAAGGD 553
Query 127 HQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQ 177
P GD P + + GAAG P GD+ P +
Sbjct 554 KNPNGDNSSEGDEPV-----PYGDETGDADNGAAGGDKNPSGDKNPNGDKN 599
Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 44/164 (27%), Positives = 56/164 (35%), Gaps = 27/164 (16%)
Query 7 AEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQ 66
A+ GAAG P GD+ P + P + + GAAG P GD+ P
Sbjct 647 ADNGAAGGDKNPSGDKNPNGDKN------PSGDKNPNGDNGAAGGDKNPSGDKNPNGDN- 699
Query 67 CGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRH 126
G G + + GAAG P GD G G + + GAAG
Sbjct 700 -GAAGGDKNPNG---DNGAAGGDKNPNGDN--------GAAGGDKNPNG---DNGAAGGD 744
Query 127 HQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDR 170
P GD P + + GAAG P GD
Sbjct 745 KNPNGDNSSEGDEPV-----PYGDETGDADNGAAGGDKNPSGDN 783
>gi|344289012|ref|XP_003416240.1| PREDICTED: hypothetical protein LOC100667707 [Loxodonta africana]
Length=1592
Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 68/201 (34%), Positives = 78/201 (39%), Gaps = 44/201 (21%)
Query 22 RKPRAWRQCGPQNGPRRSQ-AITPEPGAAGRHHQPRGDRKPRAWRQCGPQNG-------- 72
R+P+A R P +G RR A TP PGA H G R R R P G
Sbjct 997 REPQASRGLRPHSGNRRLLGAFTPTPGAGLHSHS--GSR--RLLRAFAPTPGAAGFSGPS 1052
Query 73 -----PRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHH 127
P+ S A P PGA G R+P+A R +G R S + EP A+G H
Sbjct 1053 LPLWEPQASGAFAPTPGATGFSGPSLPLREPQASRGLRSHSGSRPSLPLR-EPQASGGLH 1111
Query 128 QPRGDRK--------PRAWRQCGPQNGPRRSQAITPEPGAAGR--HHQPRGDRKPRAWRQ 177
G + P A GP P R A TP PGAAG H G R
Sbjct 1112 SHSGSHRLLGAFTPTPGATGFSGPSL-PLREPAFTPTPGAAGFWGLHSHSGSR------- 1163
Query 178 CGPQNGPRRSQAITPEPGAAG 198
R A TP PGAAG
Sbjct 1164 -------RLLGAFTPTPGAAG 1177
Score = 42.0 bits (97), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 77/243 (32%), Positives = 89/243 (37%), Gaps = 58/243 (23%)
Query 8 EPGAAGRHHQPRGDRKPRAWRQCGPQNG---------PRRSQAITPEPGAAGR------- 51
PGAAG R+P+A P G P R A TP PG AG
Sbjct 916 TPGAAGFSGPSLPLREPQASAAFAPTPGATRFSEPSLPLREPAFTPTPGVAGFWGPSLPL 975
Query 52 --------HHQPRGD------RKPRAWRQCGPQNGPRRSQ-AITPEPGAAGRHHQPRGDR 96
H G R+P+A R P +G RR A TP PGA H G R
Sbjct 976 REPQASRGLHSHSGSRPSLPLREPQASRGLRPHSGNRRLLGAFTPTPGAGLHSHS--GSR 1033
Query 97 KPRAWRQCGPQNG-------------PRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGP 143
R R P G P+ S A P PGA G R+P+A R
Sbjct 1034 --RLLRAFAPTPGAAGFSGPSLPLWEPQASGAFAPTPGATGFSGPSLPLREPQASRGLRS 1091
Query 144 QNGPRRSQAITPEPGAAGRHHQPRGDRK--------PRAWRQCGPQNGPRRSQAITPEPG 195
+G R S + EP A+G H G + P A GP P R A TP PG
Sbjct 1092 HSGSRPSLPLR-EPQASGGLHSHSGSHRLLGAFTPTPGATGFSGPSL-PLREPAFTPTPG 1149
Query 196 AAG 198
AAG
Sbjct 1150 AAG 1152
Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 60/198 (31%), Positives = 70/198 (36%), Gaps = 43/198 (21%)
Query 32 PQNGPRRSQAITPEPGAAGR--------HHQPRGDRKPR-----AWRQCGPQNGPRRSQA 78
P P+ S A TP PGA G H+ G P W R A
Sbjct 342 PLREPQASGAFTPTPGATGFSGLHPHSGSHRLLGAFTPTPGATGFWGLQSHSGSHRLLGA 401
Query 79 ITPEPGAAGRHHQPRGDRKPRAWRQCGPQNG---------PRRSQAITPEPGAAGRHHQP 129
TP PGA G R+P+A R +G P+ S A TP PG G
Sbjct 402 FTPTPGATGFSGPSLPLREPQASRGLHSHSGSRPSLPLREPQASGAFTPTPGDTGFSGPS 461
Query 130 RGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNG------ 183
R+P+A S A TP PGA G R+P+A P G
Sbjct 462 LPLREPQA------------SGAFTPTPGATGFSGPSLPLREPQASGAFTPTPGATGFSG 509
Query 184 ---PRRSQAITPEPGAAG 198
P R A TP PGA G
Sbjct 510 PSLPLREPAFTPTPGATG 527
Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 58/185 (32%), Positives = 70/185 (38%), Gaps = 43/185 (23%)
Query 37 RRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNG---------PRRSQAITPEPGAAG 87
R + +TP PGAAG R+P+A P G P R A TP PG AG
Sbjct 908 RLLRDVTPTPGAAGFSGPSLPLREPQASAAFAPTPGATRFSEPSLPLREPAFTPTPGVAG 967
Query 88 RHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAGRHHQPRGDRKPRAWRQCGPQNGP 147
R+P+A R +G R S + R+P+A R P +G
Sbjct 968 FWGPSLPLREPQASRGLHSHSGSRPSLPL----------------REPQASRGLRPHSGN 1011
Query 148 RRSQ-AITPEPGAAGRHHQPRGDRKPRAWRQCGPQNG-------------PRRSQAITPE 193
RR A TP PGA H G R R R P G P+ S A P
Sbjct 1012 RRLLGAFTPTPGAGLHSHS--GSR--RLLRAFAPTPGAAGFSGPSLPLWEPQASGAFAPT 1067
Query 194 PGAAG 198
PGA G
Sbjct 1068 PGATG 1072
>gi|294993983|ref|ZP_06799674.1| hypothetical protein Mtub2_05593 [Mycobacterium tuberculosis
210]
Length=185
Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 67/186 (37%), Positives = 79/186 (43%), Gaps = 63/186 (33%)
Query 1 VAIANPAEPGAAGRHHQ-------------------PRGDRKP-RAWRQCGPQNGPRRSQ 40
+AIA+ A+P AAGRHHQ PRGDRK A R P + P +
Sbjct 1 MAIASAAQPRAAGRHHQTPWRSQARRSRAQRVATIKPRGDRKRGAAARSGSPPSNPV-AI 59
Query 41 AITPEPGAAGRHHQ-------------------PRGDRKP-RAWRQCGPQNGPRRSQAIT 80
A +P AAGRHHQ PRGDRK A R P + P + A
Sbjct 60 ASAAQPRAAGRHHQTPWRSQARRSRAQRVATIKPRGDRKRGAAARSGSPPSNP-VAIASA 118
Query 81 PEPGAAGRHHQ-------------------PRGDRKP-RAWRQCGPQNGPRRSQAITPEP 120
+P AAGRHHQ PRGDRK A R P + P + A +P
Sbjct 119 AQPRAAGRHHQTPWRSQARRSRAQRVATIKPRGDRKRGAAARSGSPPSNP-VAIASAAQP 177
Query 121 GAAGRH 126
AAGRH
Sbjct 178 RAAGRH 183
>gi|73965441|ref|XP_853889.1| PREDICTED: similar to CG14692-PA [Canis familiaris]
Length=874
Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/162 (25%), Positives = 65/162 (41%), Gaps = 8/162 (4%)
Query 6 PAEPGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPG---AAGRHHQPRGDRKPR 62
PA+ A +H P G+ KP A Q P + + P A +H +P G+ +P
Sbjct 686 PAQSEATVQHPNPLGEVKPSATHQKAPSQHLNTYEEVNPSATQQEATAQHPEPSGEVEPS 745
Query 63 AWRQCGPQNGPRRSQAITPEP---GAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPE 119
+Q GP + P +T P A PR KP P++ ++ P+
Sbjct 746 PTQQEGPAHSPEH-HVVTVSPLGQSQAELLLSPRVTVKPVDLALITPESTNEVETSL-PQ 803
Query 120 PGAAGRHHQPRGDRKPRAWRQCGPQNGPRRSQAITPEPGAAG 161
A+ + + KP A +Q P+ P ++ + P P G
Sbjct 804 QEASAQSAVSQEHLKPSAIQQEFPEQLPAPAENVEPSPVQQG 845
Lambda K H
0.316 0.136 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 263865364408
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40