BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3613c

Length=53
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610749|ref|NP_218130.1|  hypothetical protein Rv3613c [Mycob...   108    4e-22
gi|340628578|ref|YP_004747030.1|  hypothetical protein MCAN_36251...  88.6    3e-16


>gi|15610749|ref|NP_218130.1| hypothetical protein Rv3613c [Mycobacterium tuberculosis H37Rv]
 gi|31794789|ref|NP_857282.1| hypothetical protein Mb3643c [Mycobacterium bovis AF2122/97]
 gi|121639532|ref|YP_979756.1| hypothetical protein BCG_3677c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 23 more sequence titles
 Length=53

 Score =  108 bits (269),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 53/53 (100%), Positives = 53/53 (100%), Gaps = 0/53 (0%)

Query  1   MCTMPKLWRAFMAGRPLGSTFTPRQPTGAAPNHVRALDDSIDPSSAPAARAAL  53
           MCTMPKLWRAFMAGRPLGSTFTPRQPTGAAPNHVRALDDSIDPSSAPAARAAL
Sbjct  1   MCTMPKLWRAFMAGRPLGSTFTPRQPTGAAPNHVRALDDSIDPSSAPAARAAL  53


>gi|340628578|ref|YP_004747030.1| hypothetical protein MCAN_36251 [Mycobacterium canettii CIPT 
140010059]
 gi|340006768|emb|CCC45956.1| hypothetical protein MCAN_36251 [Mycobacterium canettii CIPT 
140010059]
Length=53

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 46/53 (87%), Positives = 48/53 (91%), Gaps = 0/53 (0%)

Query  1   MCTMPKLWRAFMAGRPLGSTFTPRQPTGAAPNHVRALDDSIDPSSAPAARAAL  53
           M +MPKL RAFMAGRP  ST+TPRQPTGAAPNHVRALDDSIDPSSAP ARAAL
Sbjct  1   MHSMPKLRRAFMAGRPPRSTWTPRQPTGAAPNHVRALDDSIDPSSAPVARAAL  53



Lambda     K      H
   0.320    0.130    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130244412240


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40