BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3622c

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15843234|ref|NP_338271.1|  PE family protein [Mycobacterium tu...   186    1e-45
gi|167968541|ref|ZP_02550818.1|  PE family protein [Mycobacterium...   179    9e-44
gi|183985090|ref|YP_001853381.1|  PE family protein [Mycobacteriu...   130    5e-29
gi|183985086|ref|YP_001853377.1|  PE family protein, PE32 [Mycoba...   125    2e-27
gi|240172418|ref|ZP_04751077.1|  PE family protein [Mycobacterium...   125    2e-27
gi|118619370|ref|YP_907702.1|  PE family protein [Mycobacterium u...   124    5e-27
gi|296166686|ref|ZP_06849111.1|  PE family protein [Mycobacterium...   122    2e-26
gi|15843089|ref|NP_338126.1|  PE family protein [Mycobacterium tu...   103    9e-21
gi|31794651|ref|NP_857144.1|  PE family protein [Mycobacterium bo...   102    2e-20
gi|296164186|ref|ZP_06846786.1|  PE family protein [Mycobacterium...   101    4e-20
gi|183982677|ref|YP_001850968.1|  PE family protein, PE19_1 [Myco...  99.4    1e-19
gi|342861310|ref|ZP_08717958.1|  hypothetical protein MCOL_20601 ...  99.4    2e-19
gi|118618471|ref|YP_906803.1|  PE family protein [Mycobacterium u...  97.8    4e-19
gi|296164779|ref|ZP_06847341.1|  PE family protein [Mycobacterium...  97.8    5e-19
gi|296170606|ref|ZP_06852185.1|  PE family protein [Mycobacterium...  95.9    2e-18
gi|254820293|ref|ZP_05225294.1|  hypothetical protein MintA_10211...  95.9    2e-18
gi|342861305|ref|ZP_08717953.1|  hypothetical protein MCOL_20576 ...  95.5    2e-18
gi|254775399|ref|ZP_05216915.1|  hypothetical protein MaviaA2_121...  95.1    3e-18
gi|240173303|ref|ZP_04751961.1|  PE family protein [Mycobacterium...  94.4    5e-18
gi|333992874|ref|YP_004525488.1|  PE-PGRS family protein [Mycobac...  93.6    9e-18
gi|240172414|ref|ZP_04751073.1|  PE family protein, PE19_1 [Mycob...  91.7    3e-17
gi|183984754|ref|YP_001853045.1|  PE-PGRS family protein [Mycobac...  91.3    4e-17
gi|15841256|ref|NP_336293.1|  PE family protein [Mycobacterium tu...  90.5    7e-17
gi|41406539|ref|NP_959375.1|  hypothetical protein MAP0441 [Mycob...  90.1    1e-16
gi|333989636|ref|YP_004522250.1|  PE family protein PE8 [Mycobact...  89.7    1e-16
gi|240169038|ref|ZP_04747697.1|  hypothetical protein MkanA1_0697...  89.7    1e-16
gi|333989643|ref|YP_004522257.1|  PE-PGRS family protein [Mycobac...  89.0    2e-16
gi|296165761|ref|ZP_06848275.1|  PE family protein [Mycobacterium...  89.0    2e-16
gi|342858923|ref|ZP_08715577.1|  PE-PGRS family protein [Mycobact...  89.0    2e-16
gi|254364620|ref|ZP_04980666.1|  PE family protein [Mycobacterium...  88.6    3e-16
gi|41407605|ref|NP_960441.1|  hypothetical protein MAP1507 [Mycob...  88.6    3e-16
gi|254365420|ref|ZP_04981465.1|  PE family protein [Mycobacterium...  88.6    3e-16
gi|183981962|ref|YP_001850253.1|  PE family protein [Mycobacteriu...  88.2    3e-16
gi|240170799|ref|ZP_04749458.1|  PE-PGRS family protein [Mycobact...  86.7    9e-16
gi|342861297|ref|ZP_08717945.1|  hypothetical protein MCOL_20536 ...  86.3    1e-15
gi|183982680|ref|YP_001850971.1|  PE family protein, PE19 [Mycoba...  86.3    1e-15
gi|118616216|ref|YP_904548.1|  PE-PGRS family protein family prot...  84.7    4e-15
gi|118465345|ref|YP_882101.1|  PE family protein [Mycobacterium a...  84.0    8e-15
gi|240173524|ref|ZP_04752182.1|  PE family protein, PE19_1 [Mycob...  83.6    9e-15
gi|118618467|ref|YP_906799.1|  PE family protein [Mycobacterium u...  83.6    1e-14
gi|254775390|ref|ZP_05216906.1|  hypothetical protein MaviaA2_120...  83.2    1e-14
gi|333989638|ref|YP_004522252.1|  PE-PGRS family protein [Mycobac...  82.0    3e-14
gi|296165819|ref|ZP_06848318.1|  PE family protein [Mycobacterium...  81.6    3e-14
gi|333990542|ref|YP_004523156.1|  PE-PGRS family protein [Mycobac...  81.3    5e-14
gi|333989806|ref|YP_004522420.1|  PE family protein PE19 [Mycobac...  80.1    9e-14
gi|31792979|ref|NP_855472.1|  PE family protein [Mycobacterium bo...  78.6    3e-13
gi|31793944|ref|NP_856437.1|  PE family protein [Mycobacterium bo...  78.6    3e-13
gi|15841261|ref|NP_336298.1|  PE family protein [Mycobacterium tu...  78.2    3e-13
gi|41407612|ref|NP_960448.1|  hypothetical protein MAP1514 [Mycob...  78.2    4e-13
gi|212596260|gb|ACJ35564.1|  PE3 [Mycobacterium intracellulare AT...  77.8    5e-13


>gi|15843234|ref|NP_338271.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|57117136|ref|YP_177999.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|148663485|ref|YP_001285008.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 67 more sequence titles
 Length=99

 Score =  186 bits (471),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ
Sbjct  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATEAANAATIA  99
           LYQAISAEAMAVQEQLATTLGISAGSYAATEAANAATIA
Sbjct  61  LYQAISAEAMAVQEQLATTLGISAGSYAATEAANAATIA  99


>gi|167968541|ref|ZP_02550818.1| PE family protein [Mycobacterium tuberculosis H37Ra]
Length=96

 Score =  179 bits (455),  Expect = 9e-44, Method: Compositional matrix adjust.
 Identities = 96/96 (100%), Positives = 96/96 (100%), Gaps = 0/96 (0%)

Query  4   MHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQLYQ  63
           MHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQLYQ
Sbjct  1   MHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQLYQ  60

Query  64  AISAEAMAVQEQLATTLGISAGSYAATEAANAATIA  99
           AISAEAMAVQEQLATTLGISAGSYAATEAANAATIA
Sbjct  61  AISAEAMAVQEQLATTLGISAGSYAATEAANAATIA  96


>gi|183985090|ref|YP_001853381.1| PE family protein [Mycobacterium marinum M]
 gi|183178416|gb|ACC43526.1| PE family protein [Mycobacterium marinum M]
Length=99

 Score =  130 bits (328),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 70/87 (81%), Positives = 76/87 (88%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MSIM A+ ++LAATA ELQSIN   +AGN A A PTTGVVPAAADLVSLLTASQFAAHAQ
Sbjct  1   MSIMLAQTDVLAATAAELQSINVAVQAGNVAAAVPTTGVVPAAADLVSLLTASQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           LYQ I A+A+AVQEQLATTLGISAGSY
Sbjct  61  LYQQIGAQAVAVQEQLATTLGISAGSY  87


>gi|183985086|ref|YP_001853377.1| PE family protein, PE32 [Mycobacterium marinum M]
 gi|183178412|gb|ACC43522.1| PE family protein, PE32 [Mycobacterium marinum M]
Length=99

 Score =  125 bits (314),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 66/94 (71%), Positives = 79/94 (85%), Gaps = 0/94 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS + A+PE++A  A ELQ+IN+ ARAG+     PTTGVVP AADLVS+LTA+QFAAHA+
Sbjct  1   MSHVTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHAR  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATEAAN  94
           +YQAISA+A AVQ+QL T LGISAGSYAATEAAN
Sbjct  61  VYQAISAQAAAVQDQLVTVLGISAGSYAATEAAN  94


>gi|240172418|ref|ZP_04751077.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score =  125 bits (314),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 72/87 (83%), Positives = 79/87 (91%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MSIM A+P+MLAATA ELQSIN   RAGNAA AGPTTGV+PAAADLVSLLTA+QFA HAQ
Sbjct  1   MSIMLAQPDMLAATATELQSINFAVRAGNAAAAGPTTGVLPAAADLVSLLTATQFATHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQ ISA+A+AVQEQLATTLGISAGSY
Sbjct  61  MYQQISAQAVAVQEQLATTLGISAGSY  87


>gi|118619370|ref|YP_907702.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118571480|gb|ABL06231.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score =  124 bits (311),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 65/94 (70%), Positives = 79/94 (85%), Gaps = 0/94 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS + A+PE++A  A ELQ+IN+ ARAG+     PTTGVVP AADLVS+LTA+QFAAHA+
Sbjct  1   MSHVTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHAR  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATEAAN  94
           +YQAISA+A AVQ++L T LGISAGSYAATEAAN
Sbjct  61  VYQAISAQAAAVQDELVTVLGISAGSYAATEAAN  94


>gi|296166686|ref|ZP_06849111.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897951|gb|EFG77532.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  122 bits (305),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 70/98 (72%), Positives = 83/98 (85%), Gaps = 0/98 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MSI+ A+P+ML+A AGELQSIN+  +AGNAA AGPTT V PAA+D VS+LTA+QF+AHAQ
Sbjct  1   MSIVIAQPDMLSAAAGELQSINSALQAGNAAAAGPTTAVAPAASDAVSILTATQFSAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATEAANAATI  98
           LYQAISA+A   QEQLAT LGI AGSYAATEAAN+  +
Sbjct  61  LYQAISAQAARAQEQLATVLGICAGSYAATEAANSVLV  98


>gi|15843089|ref|NP_338126.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|57117110|ref|YP_177975.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121639395|ref|YP_979619.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 75 more sequence titles
 Length=98

 Score =  103 bits (257),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 58/90 (65%), Positives = 65/90 (73%), Gaps = 0/90 (0%)

Query  6   AEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQLYQAI  65
           A+PEMLAA AGEL+S+ A  +A NAA A PTTGVVP AAD VSLL A+QF  HA  YQ  
Sbjct  5   AQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQTA  64

Query  66  SAEAMAVQEQLATTLGISAGSYAATEAANA  95
           SA+A  + EQ  TTL  SA SYA TEAANA
Sbjct  65  SAKAAVIHEQFVTTLATSASSYADTEAANA  94


>gi|31794651|ref|NP_857144.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|31620248|emb|CAD95691.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=98

 Score =  102 bits (253),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 57/90 (64%), Positives = 64/90 (72%), Gaps = 0/90 (0%)

Query  6   AEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQLYQAI  65
           A+PEMLAA AGEL+S+ A  +  NAA A PTTGVVP AAD VSLL A+QF  HA  YQ  
Sbjct  5   AQPEMLAAAAGELRSLGATLKVSNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQTA  64

Query  66  SAEAMAVQEQLATTLGISAGSYAATEAANA  95
           SA+A  + EQ  TTL  SA SYA TEAANA
Sbjct  65  SAKAAVIHEQFVTTLATSASSYADTEAANA  94


>gi|296164186|ref|ZP_06846786.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900461|gb|EFG79867.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  101 bits (251),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 55/85 (65%), Positives = 63/85 (75%), Gaps = 0/85 (0%)

Query  7   EPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQLYQAIS  66
           +P+ML A AG LQ I +   A NA  A PTTGVVPAAAD VS LTA QFAAHAQ+YQA+S
Sbjct  7   DPQMLTAAAGTLQGIGSAMSAENAPAAAPTTGVVPAAADEVSALTALQFAAHAQMYQAVS  66

Query  67  AEAMAVQEQLATTLGISAGSYAATE  91
           A+A A+ E  A TLG+SA SYA TE
Sbjct  67  AQAAAIHEMFANTLGVSADSYAVTE  91


>gi|183982677|ref|YP_001850968.1| PE family protein, PE19_1 [Mycobacterium marinum M]
 gi|183176003|gb|ACC41113.1| PE family protein, PE19_1 [Mycobacterium marinum M]
Length=99

 Score = 99.4 bits (246),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA A  LQ I +   + NAA A PTTGVVPAAAD VS LTA+QFAAHAQ
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQA+SA+A A+ E    TLGIS+GSY
Sbjct  61  MYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|342861310|ref|ZP_08717958.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
 gi|342131210|gb|EGT84491.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 56/91 (62%), Positives = 66/91 (73%), Gaps = 0/91 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA AG LQ+I +   A NAA A PTTGVVPAAAD VS LTA+QFAAH Q
Sbjct  1   MSFVTTQPEALAAAAGNLQTIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHGQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATE  91
           +YQA+SA+A A+ E    TL  S+GSYA TE
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSYAVTE  91


>gi|118618471|ref|YP_906803.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570581|gb|ABL05332.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 97.8 bits (242),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 53/87 (61%), Positives = 63/87 (73%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA A  LQ I +   + NAA A PTTGVVPAAAD VS LTA+QF AHAQ
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFVAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQA+SA+A A+ E    TLGIS+GSY
Sbjct  61  MYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|296164779|ref|ZP_06847341.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899880|gb|EFG79324.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 97.8 bits (242),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 57/91 (63%), Positives = 68/91 (75%), Gaps = 0/91 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE L+A AG LQSI +   A NAA A PTTGVVPAAAD VS LTA+QFAAHAQ
Sbjct  1   MSFVTTQPEALSAAAGSLQSIGSALNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATE  91
           +YQA+SA+A A+ E    TL +S+GSYA TE
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSMSSGSYAVTE  91


>gi|296170606|ref|ZP_06852185.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894738|gb|EFG74468.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 95.9 bits (237),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA AG LQ+I +   A NAA A PTTGVVPAAAD VS LTA+QFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQA+SA+A A+ E    TL +S+GSY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSMSSGSY  87


>gi|254820293|ref|ZP_05225294.1| hypothetical protein MintA_10211 [Mycobacterium intracellulare 
ATCC 13950]
 gi|212596298|gb|ACJ35567.1| PE7 [Mycobacterium intracellulare ATCC 13950]
Length=99

 Score = 95.9 bits (237),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA AG LQ+I +   A NAA A PTTGVVPAAAD VS LTA+QFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQA+SA+A A+ E    TL  S+GSY
Sbjct  61  MYQAVSAQAQAIHEAFVNTLSTSSGSY  87


>gi|342861305|ref|ZP_08717953.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
 gi|342131205|gb|EGT84486.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score = 95.5 bits (236),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA AG LQ+I +   A NAA A PTTGVVPAAAD VS LTA+QFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQA+SA+A A+ E    TL  S+GSY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSY  87


>gi|254775399|ref|ZP_05216915.1| hypothetical protein MaviaA2_12121 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|212595819|gb|ACJ35525.1| PE7 [Mycobacterium avium subsp. avium]
 gi|336457654|gb|EGO36658.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA AG LQ+I +   A NAA A PTTGVVPAAAD VS LTA+QFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQA+SA+A A+ E    TL  S+GSY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSTSSGSY  87


>gi|240173303|ref|ZP_04751961.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=146

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 51/87 (59%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +P+ LAA AG+LQ+I A   A N A A PTTGV+PAAAD VS+L AS F A+  
Sbjct  1   MSFLTTQPDELAAAAGKLQTIGATMEAENVAAAVPTTGVIPAAADEVSMLQASMFTAYGS  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           LYQ ISAEA A+ E L  TLG+SAG+Y
Sbjct  61  LYQQISAEAAAMYEMLVNTLGVSAGTY  87


>gi|333992874|ref|YP_004525488.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333488842|gb|AEF38234.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=95

 Score = 93.6 bits (231),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 59/95 (63%), Positives = 65/95 (69%), Gaps = 0/95 (0%)

Query  4   MHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQLYQ  63
           M A PE L ATA EL SI     A N A AGPTTGVVPAAAD VS LTA+QFA HAQ+YQ
Sbjct  1   MSALPEELTATAAELSSIGNAVAAQNTAAAGPTTGVVPAAADEVSALTAAQFARHAQMYQ  60

Query  64  AISAEAMAVQEQLATTLGISAGSYAATEAANAATI  98
           AIS  A  V E+    L  +A SYAAT+AANA +I
Sbjct  61  AISKRAAVVHERFVIMLQRNAQSYAATDAANAISI  95


>gi|240172414|ref|ZP_04751073.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=281

 Score = 91.7 bits (226),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 52/95 (55%), Positives = 63/95 (67%), Gaps = 0/95 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +   PEML A  G L++I +     N   A P  GV+PAAAD VS++TA+ F A+ Q
Sbjct  1   MSFVITLPEMLMAAVGRLEAIGSAVSTANVTAALPIAGVIPAAADEVSMVTAASFTAYGQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATEAANA  95
           LYQAISAEA  + EQ    LG+SA SYAATEAANA
Sbjct  61  LYQAISAEAHLIHEQFVKALGLSANSYAATEAANA  95


>gi|183984754|ref|YP_001853045.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183178080|gb|ACC43190.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=99

 Score = 91.3 bits (225),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 54/95 (57%), Positives = 63/95 (67%), Gaps = 0/95 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           M+ + + PE L A A  L S+ A   AGNAA   P TGVVPAAAD VS LTA+ FAAH  
Sbjct  1   MAFVTSAPEALTAAALNLHSVGAGMSAGNAAAMAPITGVVPAAADEVSALTAAHFAAHGA  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATEAANA  95
           +YQ +SA+A A+ E   TTL  S GSYA TEAANA
Sbjct  61  MYQTLSAQAQAIHEMFVTTLQASGGSYAETEAANA  95


>gi|15841256|ref|NP_336293.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792976|ref|NP_855469.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116910|ref|YP_177834.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 60 more sequence titles
 Length=99

 Score = 90.5 bits (223),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA AG LQ I +   A NAA A PTTGVVPAAAD VS LTA+QFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQA+SA+A A+ E    TL +S+GSY
Sbjct  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87


>gi|41406539|ref|NP_959375.1| hypothetical protein MAP0441 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394888|gb|AAS02758.1| PE_3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336460935|gb|EGO39818.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score = 90.1 bits (222),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 46/87 (53%), Positives = 60/87 (69%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +   PE+L A A EL  INA     N+AV  PTT V PAA D+VSL+TA++F+ H  
Sbjct  1   MSFLMVRPEILDAAARELHGINAAVLQSNSAVVTPTTAVAPAAGDVVSLVTAARFSRHGL  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
            +Q +SA+A  +++Q ATTLGISAGSY
Sbjct  61  AFQEVSAQAAQLRDQFATTLGISAGSY  87


>gi|333989636|ref|YP_004522250.1| PE family protein PE8 [Mycobacterium sp. JDM601]
 gi|333485604|gb|AEF34996.1| PE family protein PE8 [Mycobacterium sp. JDM601]
Length=273

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 50/91 (55%), Positives = 61/91 (68%), Gaps = 0/91 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +   PE +AATA  LQ+I +   A N A A PTTG+ PA AD VS+L A+QFAA+ Q
Sbjct  1   MSFVTTHPEAMAATASNLQAIGSAMTAQNTAAAAPTTGIAPAGADEVSVLQATQFAAYGQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATE  91
           LYQ ISA+A A+QE    TL  SA SY +TE
Sbjct  61  LYQQISAQAAAIQEMFVNTLRTSADSYGSTE  91


>gi|240169038|ref|ZP_04747697.1| hypothetical protein MkanA1_06979 [Mycobacterium kansasii ATCC 
12478]
Length=99

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 52/89 (59%), Positives = 62/89 (70%), Gaps = 0/89 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS + A+P++LAA A  L S+ A   AGN+A A PTTGV+P AAD VS L A QFAAHA 
Sbjct  1   MSFLTAQPDVLAAAAANLGSVGAALSAGNSAAAAPTTGVLPPAADEVSALVAVQFAAHAA  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAA  89
            YQA+SA A  + +QL  TL  SAGSYAA
Sbjct  61  TYQAVSARAAGIHDQLVATLAASAGSYAA  89


>gi|333989643|ref|YP_004522257.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333485611|gb|AEF35003.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 50/87 (58%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA AG LQ+I +   A NAA + PTTGVVPAAAD VS LTA+QFA HA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSALNAQNAAASAPTTGVVPAAADEVSALTAAQFATHAT  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           LYQ+++A+A A+ E    TL  SA SY
Sbjct  61  LYQSVAAQAAAIHEMFVATLNGSAESY  87


>gi|296165761|ref|ZP_06848275.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898886|gb|EFG78378.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 56/94 (60%), Positives = 68/94 (73%), Gaps = 0/94 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS + A+PEMLAATA +L+ I +     NAA +  TTGV+PA AD VS LTA QFAAHAQ
Sbjct  1   MSFVTAQPEMLAATANDLRGIGSALAVQNAAASRSTTGVIPAGADEVSALTAVQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATEAAN  94
           +YQA+SA+A A  +    TL +SAGSYAATEA N
Sbjct  61  MYQAVSAQAAAAYDLFVRTLAVSAGSYAATEAIN  94


>gi|342858923|ref|ZP_08715577.1| PE-PGRS family protein [Mycobacterium colombiense CECT 3035]
 gi|342133164|gb|EGT86367.1| PE-PGRS family protein [Mycobacterium colombiense CECT 3035]
Length=100

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 60/96 (63%), Positives = 70/96 (73%), Gaps = 0/96 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +   P+ L+A A  LQSI A    GNAA A PTTGVVPAA D VS+LTA+QFAAHA 
Sbjct  1   MSFVTVHPDKLSAAASNLQSITAALHVGNAAAAIPTTGVVPAAVDEVSVLTAAQFAAHAA  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATEAANAA  96
            +QA++A A+AV E LA TL  SAGSY ATEAAN+A
Sbjct  61  RFQALAARALAVHELLAATLAQSAGSYTATEAANSA  96


>gi|254364620|ref|ZP_04980666.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150134|gb|EBA42179.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=99

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 53/87 (61%), Positives = 63/87 (73%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           M  +  +PE LAA AG LQ I +   A NAA A PTTGVVPAAAD VS LTA+QFAAHAQ
Sbjct  1   MPFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQA+SA+A A+ E    TL +S+GSY
Sbjct  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87


>gi|41407605|ref|NP_960441.1| hypothetical protein MAP1507 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395958|gb|AAS03824.1| PE_4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|225698451|gb|ACO07343.1| PE protein [Mycobacterium avium subsp. paratuberculosis]
Length=99

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA AG LQ+I     A NAA A PTTGVVPAAAD VS LTA+QFAA+AQ
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGWTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAYAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQA+SA+A A+ E    TL  S+ SY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSTSSVSY  87


>gi|254365420|ref|ZP_04981465.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150933|gb|EBA42978.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=275

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 54/97 (56%), Positives = 70/97 (73%), Gaps = 1/97 (1%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTT-GVVPAAADLVSLLTASQFAAHA  59
           MS +  +PE LAA AG+L++I +   A NAA A PTT GV+PAAAD +S+L A  F A+ 
Sbjct  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  60  QLYQAISAEAMAVQEQLATTLGISAGSYAATEAANAA  96
            LYQ +SAEA AV +    TLG+SAG+YAATEAAN++
Sbjct  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSS  97


>gi|183981962|ref|YP_001850253.1| PE family protein [Mycobacterium marinum M]
 gi|183175288|gb|ACC40398.1| PE family protein [Mycobacterium marinum M]
Length=267

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 53/97 (55%), Positives = 67/97 (70%), Gaps = 1/97 (1%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGN-AAVAGPTTGVVPAAADLVSLLTASQFAAHA  59
           MS +  +PE LAA AG+L++I A   A N AAVA  TTGV+PAAAD VS L AS F A+ 
Sbjct  1   MSFLTTQPEELAAAAGKLETIGATMDAENVAAVAPTTTGVIPAAADEVSALQASLFTAYG  60

Query  60  QLYQAISAEAMAVQEQLATTLGISAGSYAATEAANAA  96
            LYQ +SAEA  + +    TLG+SAG+YAA E AN++
Sbjct  61  TLYQQVSAEAATLYDMFVRTLGVSAGTYAAAETANSS  97


>gi|240170799|ref|ZP_04749458.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 86.7 bits (213),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 55/90 (62%), Positives = 63/90 (70%), Gaps = 0/90 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS + +EPE L + AG LQSI +   A NAA   P TGVVPAAAD VS LTA+ FAAH  
Sbjct  1   MSFVTSEPEALISAAGNLQSIGSAMNASNAAAIAPITGVVPAAADEVSALTAAHFAAHGT  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAAT  90
           LYQA+SA+A A+ E   TTLG S GSYAAT
Sbjct  61  LYQAVSAQAAAIHELFVTTLGASGGSYAAT  90


>gi|342861297|ref|ZP_08717945.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
 gi|342131197|gb|EGT84478.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score = 86.3 bits (212),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 49/89 (56%), Positives = 60/89 (68%), Gaps = 0/89 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           M+ + A+PE L   A  L  I +   A N+A A P TGV PAAAD VSLLTA+QFA H Q
Sbjct  1   MNFVTAQPESLDIAASRLHEIGSALTAQNSATAAPMTGVAPAAADEVSLLTAAQFARHGQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAA  89
            +QA+SA+A A+ E   TTL +SAGSYAA
Sbjct  61  TFQALSAQAAAIHENFVTTLQVSAGSYAA  89


>gi|183982680|ref|YP_001850971.1| PE family protein, PE19 [Mycobacterium marinum M]
 gi|183176006|gb|ACC41116.1| PE family protein, PE19 [Mycobacterium marinum M]
Length=99

 Score = 86.3 bits (212),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 53/87 (61%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA A  LQ I     A NAA A PTTGVVPAAAD VS LTA+QFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQA+SA+A A+ E    TL  S+GSY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|118616216|ref|YP_904548.1| PE-PGRS family protein family protein [Mycobacterium ulcerans 
Agy99]
 gi|118568326|gb|ABL03077.1| PE-PGRS family protein family protein [Mycobacterium ulcerans 
Agy99]
Length=99

 Score = 84.7 bits (208),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 51/88 (58%), Positives = 57/88 (65%), Gaps = 0/88 (0%)

Query  8   PEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQLYQAISA  67
           PE L A A  L S+ A   AGNAA   P TGVVPAAAD VS LTA+ FAAH  + Q +SA
Sbjct  8   PEALTAAALNLHSVGAGTSAGNAAAMAPITGVVPAAADEVSALTAAHFAAHGAMCQTLSA  67

Query  68  EAMAVQEQLATTLGISAGSYAATEAANA  95
           +A A+ E   TTL    GSYA TEAANA
Sbjct  68  QAQAIYEMFVTTLQACGGSYAETEAANA  95


>gi|118465345|ref|YP_882101.1| PE family protein [Mycobacterium avium 104]
 gi|118166632|gb|ABK67529.1| PE family protein [Mycobacterium avium 104]
 gi|212595805|gb|ACJ35524.1| PE6 [Mycobacterium avium subsp. avium]
Length=99

 Score = 84.0 bits (206),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 50/91 (55%), Positives = 58/91 (64%), Gaps = 0/91 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           M  + A+PE + A A  LQ I     A   A + P TGVVPAAAD VSLL A++FA H Q
Sbjct  1   MMYVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATE  91
            +QA+SAEA AV E   TTL  SAGSYA TE
Sbjct  61  AFQAVSAEAAAVHEMFVTTLQTSAGSYAGTE  91


>gi|240173524|ref|ZP_04752182.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 83.6 bits (205),  Expect = 9e-15, Method: Compositional matrix adjust.
 Identities = 53/87 (61%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA A  LQ I     A NAA A PTTGVVPAAAD VS LTA+QFAAHAQ
Sbjct  1   MSFVTTQPEALAAAASSLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQA+SA+A A+ E    TL  S+GSY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|118618467|ref|YP_906799.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570577|gb|ABL05328.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 83.6 bits (205),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 51/87 (59%), Positives = 59/87 (68%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA A  LQ I     A NAA A PTTGVVPAAAD VS LTA+QFA HAQ
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAGHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQA+SA+A  + E    TL  S+GSY
Sbjct  61  MYQAVSAQAAVIHEMFVNTLATSSGSY  87


>gi|254775390|ref|ZP_05216906.1| hypothetical protein MaviaA2_12076 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=98

 Score = 83.2 bits (204),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 49/86 (57%), Positives = 56/86 (66%), Gaps = 0/86 (0%)

Query  6   AEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQLYQAI  65
           A+PE + A A  LQ I     A   A + P TGVVPAAAD VSLL A++FA H Q +QA+
Sbjct  5   AQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQAFQAV  64

Query  66  SAEAMAVQEQLATTLGISAGSYAATE  91
           SAEA AV E   TTL  SAGSYA TE
Sbjct  65  SAEAAAVHEMFVTTLQTSAGSYAGTE  90


>gi|333989638|ref|YP_004522252.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333485606|gb|AEF34998.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 82.0 bits (201),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 53/87 (61%), Positives = 60/87 (69%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS + A+PE L A AGEL  I A   A NAA A  TTGVVPAAAD VS LTA+QF AHA 
Sbjct  1   MSFVSAQPEELTAAAGELTGIGAAMAAQNAAAAAATTGVVPAAADPVSALTAAQFVAHAD  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           LYQ++SA+A A  +   TTL  SAGSY
Sbjct  61  LYQSVSAQANATHQMFVTTLMTSAGSY  87


>gi|296165819|ref|ZP_06848318.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898827|gb|EFG78334.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 81.6 bits (200),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 68/95 (72%), Gaps = 0/95 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           M ++  +P  + A A + Q I +   AGN A A P TGVVPAAAD VS LTA QFAAHAQ
Sbjct  1   MMLVTTQPAAMTAAADDAQGIGSAMSAGNVAAAAPRTGVVPAAADEVSGLTALQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATEAANA  95
           +YQA+SA+A AV E  A+TLG+SA SYA TEAANA
Sbjct  61  IYQAVSAQAAAVHEMFASTLGVSADSYALTEAANA  95


>gi|333990542|ref|YP_004523156.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333486510|gb|AEF35902.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 50/87 (58%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS ++ +PE L A AG L +I +   A NAA A PTTGVVPAAAD VS LTA+QFAAHA 
Sbjct  1   MSFVNTQPEALTAAAGNLAAIGSALSAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAS  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQ+ISA+A A+ +    TL  SA SY
Sbjct  61  MYQSISAQAEAIHQAFVATLNSSANSY  87


>gi|333989806|ref|YP_004522420.1| PE family protein PE19 [Mycobacterium sp. JDM601]
 gi|333485774|gb|AEF35166.1| PE family protein PE19 [Mycobacterium sp. JDM601]
Length=99

 Score = 80.1 bits (196),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 50/91 (55%), Positives = 64/91 (71%), Gaps = 0/91 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS ++ +PE LA+ A EL+ I +V  A N A AGPTT + PAAAD VS LTA+ F+AHAQ
Sbjct  1   MSFVNTQPEALASAASELRGIGSVVAAQNMAAAGPTTVLPPAAADEVSALTAALFSAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAATE  91
            YQ +SA+A A+ E    TL +S+ SYAATE
Sbjct  61  AYQEVSAQAAAIHEAFVRTLALSSESYAATE  91


>gi|31792979|ref|NP_855472.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116913|ref|YP_177837.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121637692|ref|YP_977915.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 59 more sequence titles
 Length=99

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 60/87 (69%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA A  LQ I     A NAA A PTTGVVPAAAD VS LTA+QFAAHAQ
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQ +SA+A A+ E    TL  S+GSY
Sbjct  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87


>gi|31793944|ref|NP_856437.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|121638648|ref|YP_978872.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224991140|ref|YP_002645829.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 14 more sequence titles
 Length=275

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 50/90 (56%), Positives = 64/90 (72%), Gaps = 1/90 (1%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTT-GVVPAAADLVSLLTASQFAAHA  59
           MS +  +PE LAA AG+L++I +   A NAA A PTT GV+PAAAD +S+L AS F A+ 
Sbjct  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQASLFTAYG  60

Query  60  QLYQAISAEAMAVQEQLATTLGISAGSYAA  89
            LYQ +SAEA AV +    TLG+SAG+YAA
Sbjct  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAA  90


>gi|15841261|ref|NP_336298.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|148823006|ref|YP_001287760.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253799168|ref|YP_003032169.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 17 more sequence titles
 Length=105

 Score = 78.2 bits (191),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 60/87 (69%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS +  +PE LAA A  LQ I     A NAA A PTTGVVPAAAD VS LTA+QFAAHAQ
Sbjct  7   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  66

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           +YQ +SA+A A+ E    TL  S+GSY
Sbjct  67  MYQTVSAQAAAIHEMFVNTLVASSGSY  93


>gi|41407612|ref|NP_960448.1| hypothetical protein MAP1514 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395965|gb|AAS03831.1| PE_5 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336457563|gb|EGO36568.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 48/89 (54%), Positives = 57/89 (65%), Gaps = 0/89 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           M  + A+PE + A A  LQ I     A   A + P TGVVPAAAD VSLL A++FA H Q
Sbjct  1   MMYVTAQPEAMNAAADRLQQIGTALAAQTGANSAPMTGVVPAAADPVSLLAAARFAQHGQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSYAA  89
            +QA+SAEA A+ E   TTL  SAGSYAA
Sbjct  61  AFQAVSAEAAAIHEMFVTTLQTSAGSYAA  89


>gi|212596260|gb|ACJ35564.1| PE3 [Mycobacterium intracellulare ATCC 13950]
Length=99

 Score = 77.8 bits (190),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 53/87 (61%), Positives = 66/87 (76%), Gaps = 0/87 (0%)

Query  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60
           MS + A PE+L A + EL  INA  +  N+A+A  TT V PAAAD VS+LTA++F+ H Q
Sbjct  1   MSFLMARPEILDAASRELHGINAAVQENNSALAVATTAVAPAAADAVSILTAARFSQHGQ  60

Query  61  LYQAISAEAMAVQEQLATTLGISAGSY  87
           L+Q ISA+A AV+EQLATTLGISAGSY
Sbjct  61  LFQEISAQAAAVREQLATTLGISAGSY  87



Lambda     K      H
   0.310    0.117    0.297 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129711308684


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40