BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3625c Length=323 Score E Sequences producing significant alignments: (Bits) Value gi|308369177|ref|ZP_07666673.1| cell cycle protein mesJ [Mycobac... 620 1e-175 gi|15610761|ref|NP_218142.1| cell cycle protein MESJ [Mycobacter... 619 2e-175 gi|289755752|ref|ZP_06515130.1| tRNA(Ile)-lysidine synthase [Myc... 618 4e-175 gi|340628590|ref|YP_004747042.1| putative cell cycle protein MES... 606 2e-171 gi|296166689|ref|ZP_06849114.1| tRNA(Ile)-lysidine synthetase [M... 458 6e-127 gi|183985093|ref|YP_001853384.1| cell cycle protein MesJ [Mycoba... 453 2e-125 gi|118619374|ref|YP_907706.1| cell cycle protein MesJ [Mycobacte... 451 8e-125 gi|15827015|ref|NP_301278.1| hypothetical protein ML0213 [Mycoba... 450 1e-124 gi|240172424|ref|ZP_04751083.1| cell cycle protein MesJ [Mycobac... 437 9e-121 gi|118462421|ref|YP_879811.1| tRNA(Ile)-lysidine synthetase [Myc... 429 3e-118 gi|254773192|ref|ZP_05214708.1| tRNA(Ile)-lysidine synthetase [M... 427 1e-117 gi|336460938|gb|EGO39821.1| tRNA(Ile)-lysidine synthetase [Mycob... 412 4e-113 gi|333992547|ref|YP_004525161.1| cell cycle protein MesJ [Mycoba... 410 1e-112 gi|41406536|ref|NP_959372.1| hypothetical protein MAP0438 [Mycob... 410 2e-112 gi|118469721|ref|YP_890332.1| tRNA(Ile)-lysidine synthetase [Myc... 406 3e-111 gi|342862030|ref|ZP_08718674.1| tRNA(Ile)-lysidine synthase [Myc... 402 4e-110 gi|120406326|ref|YP_956155.1| tRNA(Ile)-lysidine synthetase [Myc... 399 3e-109 gi|289441054|ref|ZP_06430798.1| tRNA(Ile)-lysidine synthase (tRN... 358 6e-97 gi|126437726|ref|YP_001073417.1| tRNA(Ile)-lysidine synthetase [... 353 3e-95 gi|108801739|ref|YP_641936.1| tRNA(Ile)-lysidine synthetase-like... 344 9e-93 gi|315446257|ref|YP_004079136.1| tRNA(Ile)-lysidine synthetase [... 338 1e-90 gi|145222003|ref|YP_001132681.1| tRNA(Ile)-lysidine synthetase [... 337 1e-90 gi|169627625|ref|YP_001701274.1| putative tRNA(Ile)-lysidine syn... 309 3e-82 gi|226304109|ref|YP_002764067.1| tRNA(Ile)-lysidine synthase [Rh... 294 1e-77 gi|333917987|ref|YP_004491568.1| tRNA(Ile)-lysidine synthase [Am... 293 2e-77 gi|229489828|ref|ZP_04383685.1| tRNA(Ile)-lysidine synthetase [R... 283 3e-74 gi|257057522|ref|YP_003135354.1| tRNA(Ile)-lysidine synthetase [... 267 2e-69 gi|262203875|ref|YP_003275083.1| tRNA(Ile)-lysidine synthetase [... 265 7e-69 gi|296392832|ref|YP_003657716.1| tRNA(Ile)-lysidine synthetase [... 263 3e-68 gi|343924381|ref|ZP_08763931.1| tRNA(Ile)-lysidine synthase [Gor... 249 3e-64 gi|296138291|ref|YP_003645534.1| tRNA(Ile)-lysidine synthetase [... 245 6e-63 gi|226363729|ref|YP_002781511.1| tRNA(Ile)-lysidine synthase [Rh... 237 2e-60 gi|302530792|ref|ZP_07283134.1| predicted protein [Streptomyces ... 237 2e-60 gi|134097007|ref|YP_001102668.1| cell cycle protein MesJ [Saccha... 236 4e-60 gi|331699846|ref|YP_004336085.1| tRNA(Ile)-lysidine synthase [Ps... 235 8e-60 gi|326384091|ref|ZP_08205774.1| tRNA(Ile)-lysidine synthetase [G... 231 2e-58 gi|312138048|ref|YP_004005384.1| tRNA(ile)-lysidine synthase [Rh... 230 2e-58 gi|111021375|ref|YP_704347.1| cell cycle protein [Rhodococcus jo... 229 4e-58 gi|300790558|ref|YP_003770849.1| cell cycle protein MesJ [Amycol... 226 3e-57 gi|54022352|ref|YP_116594.1| hypothetical protein nfa3880 [Nocar... 213 3e-53 gi|319949370|ref|ZP_08023439.1| tRNA(Ile)-lysidine synthetase [D... 202 4e-50 gi|68535341|ref|YP_250046.1| cell cycle protein MesJ [Corynebact... 199 3e-49 gi|325675051|ref|ZP_08154738.1| tRNA(Ile)-lysidine synthase (tRN... 197 1e-48 gi|297563883|ref|YP_003682856.1| tRNA(Ile)-lysidine synthetase [... 197 2e-48 gi|260578435|ref|ZP_05846349.1| cell cycle protein MesJ [Coryneb... 196 5e-48 gi|290958428|ref|YP_003489610.1| hypothetical protein SCAB_39801... 194 2e-47 gi|284989211|ref|YP_003407765.1| tRNA(Ile)-lysidine synthetase [... 192 6e-47 gi|256374465|ref|YP_003098125.1| tRNA(Ile)-lysidine synthetase [... 192 6e-47 gi|336324741|ref|YP_004604707.1| putative tRNA Ile-lysidine synt... 189 8e-46 gi|258651090|ref|YP_003200246.1| tRNA(Ile)-lysidine synthetase [... 188 1e-45 >gi|308369177|ref|ZP_07666673.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu002] gi|308328476|gb|EFP17327.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu002] Length=335 Score = 620 bits (1598), Expect = 1e-175, Method: Compositional matrix adjust. Identities = 323/323 (100%), Positives = 323/323 (100%), Gaps = 0/323 (0%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL Sbjct 13 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 72 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH 120 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH Sbjct 73 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH 132 Query 121 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 180 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH Sbjct 133 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 192 Query 181 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG 240 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG Sbjct 193 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG 252 Query 241 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS 300 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS Sbjct 253 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS 312 Query 301 TLRGQRLVAGRRDGVLVLRREPV 323 TLRGQRLVAGRRDGVLVLRREPV Sbjct 313 TLRGQRLVAGRRDGVLVLRREPV 335 >gi|15610761|ref|NP_218142.1| cell cycle protein MESJ [Mycobacterium tuberculosis H37Rv] gi|15843237|ref|NP_338274.1| hypothetical protein MT3727 [Mycobacterium tuberculosis CDC1551] gi|31794795|ref|NP_857288.1| cell cycle protein MESJ [Mycobacterium bovis AF2122/97] 72 more sequence titles Length=323 Score = 619 bits (1597), Expect = 2e-175, Method: Compositional matrix adjust. Identities = 323/323 (100%), Positives = 323/323 (100%), Gaps = 0/323 (0%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL Sbjct 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH 120 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH Sbjct 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH 120 Query 121 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 180 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH Sbjct 121 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 180 Query 181 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG 240 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG Sbjct 181 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG 240 Query 241 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS 300 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS Sbjct 241 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS 300 Query 301 TLRGQRLVAGRRDGVLVLRREPV 323 TLRGQRLVAGRRDGVLVLRREPV Sbjct 301 TLRGQRLVAGRRDGVLVLRREPV 323 >gi|289755752|ref|ZP_06515130.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis EAS054] gi|289696339|gb|EFD63768.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis EAS054] Length=323 Score = 618 bits (1593), Expect = 4e-175, Method: Compositional matrix adjust. Identities = 322/323 (99%), Positives = 323/323 (100%), Gaps = 0/323 (0%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL Sbjct 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH 120 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH Sbjct 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH 120 Query 121 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 180 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH Sbjct 121 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 180 Query 181 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG 240 NTDRRFTRTRLRTEVLPLLE+VLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG Sbjct 181 NTDRRFTRTRLRTEVLPLLEEVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG 240 Query 241 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS 300 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS Sbjct 241 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS 300 Query 301 TLRGQRLVAGRRDGVLVLRREPV 323 TLRGQRLVAGRRDGVLVLRREPV Sbjct 301 TLRGQRLVAGRRDGVLVLRREPV 323 >gi|340628590|ref|YP_004747042.1| putative cell cycle protein MESJ [Mycobacterium canettii CIPT 140010059] gi|340006780|emb|CCC45968.1| putative cell cycle protein MESJ [Mycobacterium canettii CIPT 140010059] Length=323 Score = 606 bits (1562), Expect = 2e-171, Method: Compositional matrix adjust. Identities = 317/323 (99%), Positives = 319/323 (99%), Gaps = 0/323 (0%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDRQ AVAQLRAAAEQFARVHLDACDRW+VGLSGGPDSLALTAVAARLWPTTALIVDHGL Sbjct 1 MDRQGAVAQLRAAAEQFARVHLDACDRWTVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH 120 QPGSATVAETARIQAISLGCVDARVL VQVG AGGREAAARSARYSALE HRDGPVLLAH Sbjct 61 QPGSATVAETARIQAISLGCVDARVLRVQVGGAGGREAAARSARYSALEAHRDGPVLLAH 120 Query 121 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 180 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH Sbjct 121 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 180 Query 181 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG 240 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG Sbjct 181 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG 240 Query 241 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS 300 S+GQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS Sbjct 241 SQGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS 300 Query 301 TLRGQRLVAGRRDGVLVLRREPV 323 TLRGQRLVAGRRDGVLVLRREPV Sbjct 301 TLRGQRLVAGRRDGVLVLRREPV 323 >gi|296166689|ref|ZP_06849114.1| tRNA(Ile)-lysidine synthetase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897954|gb|EFG77535.1| tRNA(Ile)-lysidine synthetase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=320 Score = 458 bits (1178), Expect = 6e-127, Method: Compositional matrix adjust. Identities = 252/323 (79%), Positives = 275/323 (86%), Gaps = 4/323 (1%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDRQ AV QLRAA E+FA+ H ++W V LSGGPDSLALTAVAA+L PTTA+IVDHGL Sbjct 1 MDRQGAVGQLRAAVEEFAKTHAATAEQWCVALSGGPDSLALTAVAAQLRPTTAVIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH 120 QPGS VAETAR QA+++GCV A+V+ V VG GG EAAAR+ARY+AL + GPVLL H Sbjct 61 QPGSGDVAETARAQAVAVGCVAAQVVRVHVGNEGGPEAAARTARYAALSAYHGGPVLLGH 120 Query 121 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 180 TLDDQAETVLLGLGRGSG RSIAGMRPYDPPW RPLLGVRR++THAAC ELGLTAWQDPH Sbjct 121 TLDDQAETVLLGLGRGSGVRSIAGMRPYDPPWGRPLLGVRRALTHAACAELGLTAWQDPH 180 Query 181 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG 240 NTDRRFTRTRLR EVLPLLE+VLGGGVAEALARTATALREDT+LIDT+AA+ALP A Sbjct 181 NTDRRFTRTRLRQEVLPLLEEVLGGGVAEALARTATALREDTELIDTLAARALPEAKA-- 238 Query 241 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS 300 G L T AL ALP VRRRVIRGWLLAGGATGLTD+QIRGVD LVTAWRGQGGVAVGS Sbjct 239 --GAGLHTQALAALPGPVRRRVIRGWLLAGGATGLTDKQIRGVDALVTAWRGQGGVAVGS 296 Query 301 TLRGQRLVAGRRDGVLVLRREPV 323 LR +RL+AGRRDGVL L REPV Sbjct 297 ALRDERLIAGRRDGVLTLWREPV 319 >gi|183985093|ref|YP_001853384.1| cell cycle protein MesJ [Mycobacterium marinum M] gi|183178419|gb|ACC43529.1| cell cycle protein MesJ [Mycobacterium marinum M] Length=323 Score = 453 bits (1165), Expect = 2e-125, Method: Compositional matrix adjust. Identities = 261/327 (80%), Positives = 278/327 (86%), Gaps = 8/327 (2%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDRQ AVAQLR A E+FA HLDA DRWS+GLSGGPDSLALTAVAARL PTTALIVDHGL Sbjct 1 MDRQGAVAQLRRAVEKFASTHLDATDRWSIGLSGGPDSLALTAVAARLRPTTALIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVG----AAGGREAAARSARYSALEEHRDGPV 116 QP SA V+ETAR QA+SLGCV ARVL VQVG A GG EAAAR+ARY AL+ HRDGPV Sbjct 61 QPDSAAVSETARAQAVSLGCVAARVLRVQVGNPAGAGGGLEAAARTARYGALDAHRDGPV 120 Query 117 LLAHTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAW 176 LLAHTLDDQAETVLLGLGRGSGARSIAGMRP+DPPWCRPLLGVRR VTH ACRELGLTAW Sbjct 121 LLAHTLDDQAETVLLGLGRGSGARSIAGMRPHDPPWCRPLLGVRRGVTHDACRELGLTAW 180 Query 177 QDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGA 236 QDPHN+DRRFTRTRLR EVLPLLE+VLGGGVA ALARTATALR DT+L+D IAA+ALP A Sbjct 181 QDPHNSDRRFTRTRLRAEVLPLLEEVLGGGVAAALARTATALRADTELLDAIAAEALPTA 240 Query 237 AVAGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGV 296 V L TS L LPD VRRRVIR WLLAGGA GLTD+QIRGVD LVTAWRGQGGV Sbjct 241 VVDSG----LDTSVLATLPDPVRRRVIRSWLLAGGAIGLTDKQIRGVDALVTAWRGQGGV 296 Query 297 AVGSTLRGQRLVAGRRDGVLVLRREPV 323 AVGS L+ +RLVAGR G+L LR EP+ Sbjct 297 AVGSNLKARRLVAGRGGGLLTLRSEPI 323 >gi|118619374|ref|YP_907706.1| cell cycle protein MesJ [Mycobacterium ulcerans Agy99] gi|118571484|gb|ABL06235.1| cell cycle protein MesJ [Mycobacterium ulcerans Agy99] Length=323 Score = 451 bits (1160), Expect = 8e-125, Method: Compositional matrix adjust. Identities = 260/327 (80%), Positives = 276/327 (85%), Gaps = 8/327 (2%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDRQ AVAQLR A E FA HLDA DRWS+GLSGGPDSLALTAVAARL PTTALIVDHGL Sbjct 1 MDRQGAVAQLRRAVENFASTHLDATDRWSIGLSGGPDSLALTAVAARLRPTTALIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVG----AAGGREAAARSARYSALEEHRDGPV 116 QP SA V+ETAR QA+SLGCV ARVL VQVG A GG EAAAR+ARY AL+ HRDGPV Sbjct 61 QPDSAAVSETARAQAVSLGCVTARVLRVQVGNPAGAGGGLEAAARTARYGALDAHRDGPV 120 Query 117 LLAHTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAW 176 LLAHTLDDQAETVLLGLGRGSGARSIAGMRP+DPPWCRPLLGVRR VTH ACRELGLTAW Sbjct 121 LLAHTLDDQAETVLLGLGRGSGARSIAGMRPHDPPWCRPLLGVRRGVTHDACRELGLTAW 180 Query 177 QDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGA 236 QDPHN+DRRFTRTRLR EVLPLLE+VLGGGVA ALARTATALR DT+L+D IAA+ALP A Sbjct 181 QDPHNSDRRFTRTRLRAEVLPLLEEVLGGGVAAALARTATALRADTELLDAIAAEALPTA 240 Query 237 AVAGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGV 296 V L TS L LPD VRRRVIR WLLAGGA GLTD+QIRGVD LVTAWRGQGGV Sbjct 241 VVDFG----LDTSVLATLPDPVRRRVIRSWLLAGGAIGLTDKQIRGVDALVTAWRGQGGV 296 Query 297 AVGSTLRGQRLVAGRRDGVLVLRREPV 323 A GS L+ +RLVAGR G+L LR EP+ Sbjct 297 AFGSNLKARRLVAGRGGGLLTLRSEPI 323 >gi|15827015|ref|NP_301278.1| hypothetical protein ML0213 [Mycobacterium leprae TN] gi|221229493|ref|YP_002502909.1| hypothetical protein MLBr_00213 [Mycobacterium leprae Br4923] gi|6137303|sp|O69538.1|TILS_MYCLE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|3097231|emb|CAA18805.1| hypothetical protein MLCB2548.18c [Mycobacterium leprae] gi|13092562|emb|CAC29721.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932600|emb|CAR70306.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=323 Score = 450 bits (1158), Expect = 1e-124, Method: Compositional matrix adjust. Identities = 252/327 (78%), Positives = 267/327 (82%), Gaps = 8/327 (2%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDRQ AV QLR E+FA + D D+W V LSGG DSLALTAVAA+L TTA IVDHGL Sbjct 1 MDRQGAVGQLRRTVEEFAGTYCDIDDQWCVALSGGSDSLALTAVAAQLRSTTAFIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQV----GAAGGREAAARSARYSALEEHRDGPV 116 Q SA VAETAR QAISLGCVDA+VLCVQ+ G GG EAAAR+ARY+ L +R+GPV Sbjct 61 QSDSAAVAETARKQAISLGCVDAQVLCVQIDPPFGPKGGLEAAARAARYAVLGANRNGPV 120 Query 117 LLAHTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAW 176 LLAHTLDDQAETVLLGLGRGSGARSIAGMRP+DPPWCRPLLGVRRSV AAC ELGL AW Sbjct 121 LLAHTLDDQAETVLLGLGRGSGARSIAGMRPHDPPWCRPLLGVRRSVPRAACHELGLNAW 180 Query 177 QDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGA 236 QDPHNTD R+TRTRLR EVLPLLEDVLGGGV EALARTATALREDT+LIDT AAQALP Sbjct 181 QDPHNTDCRYTRTRLRLEVLPLLEDVLGGGVVEALARTATALREDTELIDTFAAQALPNI 240 Query 237 AVAGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGV 296 G L AL ALPDAVRRRVIRGWLL GGATGLTD+QIRGVD LVTAWRGQGGV Sbjct 241 CA----GSGLHARALAALPDAVRRRVIRGWLLNGGATGLTDKQIRGVDTLVTAWRGQGGV 296 Query 297 AVGSTLRGQRLVAGRRDGVLVLRREPV 323 AVGSTLRGQRL+A R DGVL L PV Sbjct 297 AVGSTLRGQRLIASRYDGVLTLHCAPV 323 >gi|240172424|ref|ZP_04751083.1| cell cycle protein MesJ [Mycobacterium kansasii ATCC 12478] Length=353 Score = 437 bits (1125), Expect = 9e-121, Method: Compositional matrix adjust. Identities = 263/353 (75%), Positives = 277/353 (79%), Gaps = 34/353 (9%) Query 1 MDRQSAVAQLRAAAEQF------------------------------ARVHLDACDRWSV 30 MDR AVAQLR A E+F + H + +RW V Sbjct 1 MDRPGAVAQLRRAVEKFVAQYLGSAEHFGSPEHFGSAGHFGSAEHFGSAGHFGSAERWCV 60 Query 31 GLSGGPDSLALTAVAARLWPTTALIVDHGLQPGSATVAETARIQAISLGCVDARVLCVQV 90 GLSGGPDSLALTAVAA+L PTTALIVDHGLQ GSA VAETAR QAISLGC DA+V+CVQV Sbjct 61 GLSGGPDSLALTAVAAQLRPTTALIVDHGLQLGSAAVAETARAQAISLGCDDAQVICVQV 120 Query 91 GAAGGREAAARSARYSALEEHRDGPVLLAHTLDDQAETVLLGLGRGSGARSIAGMRPYDP 150 G AGG EAAAR+ARY+AL+ HRDGPVLL HTLDDQAETVLLGLGRGSG RSIAGMRPYDP Sbjct 121 GTAGGLEAAARAARYAALQAHRDGPVLLGHTLDDQAETVLLGLGRGSGPRSIAGMRPYDP 180 Query 151 PWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEA 210 PWCRPLLGVRR VT AACRELGLTAWQDPHNTDRRFTRTRLR EVLPLLEDVLGGGVAEA Sbjct 181 PWCRPLLGVRRDVTQAACRELGLTAWQDPHNTDRRFTRTRLRQEVLPLLEDVLGGGVAEA 240 Query 211 LARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWLLAG 270 LARTATALREDTDLIDTIAA+ A A + G L T+ALTALP VRRRVIR WLLAG Sbjct 241 LARTATALREDTDLIDTIAAR----ALTAAAAGSGLDTAALTALPGPVRRRVIRRWLLAG 296 Query 271 GATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRLVAGRRDGVLVLRREPV 323 GATGLTD+QIRGVD LVT W GQGGVAVGS RGQRL AGRRD VL LR EPV Sbjct 297 GATGLTDKQIRGVDALVTDWHGQGGVAVGSASRGQRLFAGRRDCVLSLRLEPV 349 >gi|118462421|ref|YP_879811.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium 104] gi|118163708|gb|ABK64605.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium 104] Length=320 Score = 429 bits (1103), Expect = 3e-118, Method: Compositional matrix adjust. Identities = 241/323 (75%), Positives = 265/323 (83%), Gaps = 4/323 (1%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDR A+ +LR A E F+ HL A +RW V LSGGPDSLALTAVAARL PTTA+IVDHGL Sbjct 1 MDRPGALDRLRTAVEAFSTAHLGAVERWCVALSGGPDSLALTAVAARLRPTTAVIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH 120 QP SA VA+TAR QAI+LGCV A+V+ V V GG EAAAR ARY+AL HRDGPVLL H Sbjct 61 QPDSAAVAQTARAQAIALGCVAAQVISVHVDGEGGPEAAARRARYAALAAHRDGPVLLGH 120 Query 121 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 180 TLDDQAETVLLGLGRGSG RSIAGMRP+DPPWCRPLLG RR+VTHAAC ELGLTAWQDPH Sbjct 121 TLDDQAETVLLGLGRGSGVRSIAGMRPHDPPWCRPLLGQRRAVTHAACAELGLTAWQDPH 180 Query 181 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG 240 N+DRRFTR RLR EVLPLLE+VLGGGVAEALARTATALRED +++D +A +ALP A Sbjct 181 NSDRRFTRARLRAEVLPLLEEVLGGGVAEALARTATALREDNEVLDALAERALPAAQA-- 238 Query 241 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS 300 G L +AL L VRRRVIR WLLAGGATGLTD+QIRGVD L+TAWRGQGGVAVGS Sbjct 239 --GAGLQVAALAGLDAPVRRRVIRAWLLAGGATGLTDKQIRGVDNLITAWRGQGGVAVGS 296 Query 301 TLRGQRLVAGRRDGVLVLRREPV 323 + G+RL AGRRDGVL L REPV Sbjct 297 SQPGERLFAGRRDGVLTLWREPV 319 >gi|254773192|ref|ZP_05214708.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium subsp. avium ATCC 25291] Length=320 Score = 427 bits (1098), Expect = 1e-117, Method: Compositional matrix adjust. Identities = 242/323 (75%), Positives = 264/323 (82%), Gaps = 4/323 (1%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDR A+ +LR A E F+ HL A +RW V LSGGPDSLALTAVAARL PTTA+IVDHGL Sbjct 1 MDRPGALDRLRTAVEAFSTAHLGAVERWCVALSGGPDSLALTAVAARLRPTTAVIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH 120 QP SA VA+TAR QAI+LGCV A+V+ V V GG EAAAR ARY+AL HRDGPVLL H Sbjct 61 QPDSAAVAQTARAQAIALGCVAAQVISVHVDGEGGPEAAARRARYAALAAHRDGPVLLGH 120 Query 121 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 180 TLDDQAETVLLGLGRGSG RSIAGMRP+DPPWCRPLLG RR+VTHAAC ELGLTAWQDPH Sbjct 121 TLDDQAETVLLGLGRGSGVRSIAGMRPHDPPWCRPLLGQRRAVTHAACAELGLTAWQDPH 180 Query 181 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG 240 N+DRRFTR RLR EVLPLLE+VLGGGVAEALARTATALRED +L+D +A +ALP A Sbjct 181 NSDRRFTRARLRAEVLPLLEEVLGGGVAEALARTATALREDNELLDALAERALPAARA-- 238 Query 241 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS 300 G L +AL L VRRRVIR WLLAGGATGLTD+QIRGVD LVTAWR QGGVAVGS Sbjct 239 --GAGLQVAALAGLDAPVRRRVIRAWLLAGGATGLTDKQIRGVDNLVTAWRRQGGVAVGS 296 Query 301 TLRGQRLVAGRRDGVLVLRREPV 323 + G+RL AGRRDGVL L REPV Sbjct 297 SQPGERLFAGRRDGVLTLWREPV 319 >gi|336460938|gb|EGO39821.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium subsp. paratuberculosis S397] Length=320 Score = 412 bits (1059), Expect = 4e-113, Method: Compositional matrix adjust. Identities = 242/323 (75%), Positives = 264/323 (82%), Gaps = 4/323 (1%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDR A+ +LR A E F+ HL A +RW V LSGGPDSLALTAVAARL PTTA+IVDHGL Sbjct 1 MDRPGALDRLRTAVEAFSTAHLGAVERWCVALSGGPDSLALTAVAARLRPTTAVIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH 120 QP SA VA+TAR QAI+LGCV A+V+ V V GG EAAAR ARY+AL HRDGPVLL H Sbjct 61 QPDSAAVAQTARAQAIALGCVAAQVISVHVDGEGGLEAAARRARYAALAAHRDGPVLLGH 120 Query 121 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 180 TLDDQAETVLLGLGRGSG RSIAGMRP+DPPWCRPLLG RR+VTHAAC ELGLTAWQDPH Sbjct 121 TLDDQAETVLLGLGRGSGVRSIAGMRPHDPPWCRPLLGQRRAVTHAACAELGLTAWQDPH 180 Query 181 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG 240 N+DRRF R RLR EVLPLLE+VLGGGV EALARTATALRED +L+D +A +ALP A Sbjct 181 NSDRRFARARLRAEVLPLLEEVLGGGVVEALARTATALREDNELLDALAERALP----AA 236 Query 241 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS 300 G L +AL L VRRRVIR WLLAGGATGLTD+QIRGVD LVTAWRGQGGVAVGS Sbjct 237 RAGAGLQVAALAGLDAPVRRRVIRAWLLAGGATGLTDKQIRGVDNLVTAWRGQGGVAVGS 296 Query 301 TLRGQRLVAGRRDGVLVLRREPV 323 +L G+RL AGRRDGVL L REPV Sbjct 297 SLPGERLFAGRRDGVLTLWREPV 319 >gi|333992547|ref|YP_004525161.1| cell cycle protein MesJ [Mycobacterium sp. JDM601] gi|333488515|gb|AEF37907.1| cell cycle protein MesJ [Mycobacterium sp. JDM601] Length=323 Score = 410 bits (1054), Expect = 1e-112, Method: Compositional matrix adjust. Identities = 233/327 (72%), Positives = 251/327 (77%), Gaps = 8/327 (2%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDR AVA LRAA FA HL + W V LSGGPDSLALTAVAA+L PTTALIVDHGL Sbjct 1 MDRSGAVAGLRAALLAFAERHLPEVEPWCVALSGGPDSLALTAVAAQLRPTTALIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAG---GREAAARSARYSALEEHRDG-PV 116 Q GSA VA AR QAI LGCVDA+V+ V VG G G EAAAR+ARY ALE RD PV Sbjct 61 QAGSAQVAGRARSQAIELGCVDAQVIPVTVGGKGFRGGPEAAARTARYGALERARDRRPV 120 Query 117 LLAHTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAW 176 LL HTLDDQAETVLLGLGRGSG RS+AGMRP+DPPWCRPLLGVRR+ T AC EL LT W Sbjct 121 LLGHTLDDQAETVLLGLGRGSGPRSLAGMRPHDPPWCRPLLGVRRAATREACTELALTPW 180 Query 177 QDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGA 236 DPHN+D+RFTR RLR +VLPLLEDVLGGGVAEALAR+ATALRE+T+LID +A QA P Sbjct 181 LDPHNSDKRFTRVRLRLQVLPLLEDVLGGGVAEALARSATALRENTELIDALAEQAAPEV 240 Query 237 AVAGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGV 296 + G L T+ L L VRR VIR WLLAGG GLTD QIR VDRLVT WRGQGGV Sbjct 241 ----TAGAGLDTAGLAGLAGPVRRAVIRRWLLAGGGRGLTDLQIRAVDRLVTQWRGQGGV 296 Query 297 AVGSTLRGQRLVAGRRDGVLVLRREPV 323 AVGS LRG+RL A R DGVL LRREPV Sbjct 297 AVGSDLRGERLFAVRDDGVLRLRREPV 323 >gi|41406536|ref|NP_959372.1| hypothetical protein MAP0438 [Mycobacterium avium subsp. paratuberculosis K-10] gi|61216573|sp|Q744A3.1|TILS_MYCPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|41394885|gb|AAS02755.1| MesJ [Mycobacterium avium subsp. paratuberculosis K-10] Length=320 Score = 410 bits (1053), Expect = 2e-112, Method: Compositional matrix adjust. Identities = 241/323 (75%), Positives = 263/323 (82%), Gaps = 4/323 (1%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDR A+ +LR A E F+ HL A +RW V LSGGPDSLALTAVAARL PTTA+IVDHGL Sbjct 1 MDRPGALDRLRTAVEAFSTAHLGAVERWCVALSGGPDSLALTAVAARLRPTTAVIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH 120 QP SA VA+TAR QAI+LGCV A+V+ V V GG EAAAR ARY+AL HRDGPVLL H Sbjct 61 QPDSAAVAQTARAQAIALGCVAAQVISVHVDGEGGLEAAARRARYAALAAHRDGPVLLGH 120 Query 121 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 180 TLDDQAETVLLGLGRGSG RSIAGMRP+DPPWCRPLLG RR+VTHAAC ELGLTAWQDPH Sbjct 121 TLDDQAETVLLGLGRGSGVRSIAGMRPHDPPWCRPLLGQRRAVTHAACAELGLTAWQDPH 180 Query 181 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAG 240 N+DRRF R RLR EVLPLLE+VLGGGV EALARTATALRED +L+D +A +ALP A Sbjct 181 NSDRRFARARLRAEVLPLLEEVLGGGVVEALARTATALREDNELLDALAERALP----AA 236 Query 241 SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGS 300 G L +AL L VRRRVIR WLLAGGATGLTD+QIRGVD LVTAWRGQG VAVGS Sbjct 237 RAGAGLQVAALAGLDAPVRRRVIRAWLLAGGATGLTDKQIRGVDNLVTAWRGQGAVAVGS 296 Query 301 TLRGQRLVAGRRDGVLVLRREPV 323 +L G+RL AGRRDGVL L REPV Sbjct 297 SLPGERLFAGRRDGVLTLWREPV 319 >gi|118469721|ref|YP_890332.1| tRNA(Ile)-lysidine synthetase [Mycobacterium smegmatis str. MC2 155] gi|118171008|gb|ABK71904.1| tRNA(Ile)-lysidine synthetase [Mycobacterium smegmatis str. MC2 155] Length=322 Score = 406 bits (1043), Expect = 3e-111, Method: Compositional matrix adjust. Identities = 226/324 (70%), Positives = 246/324 (76%), Gaps = 3/324 (0%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDR AVA LR FA +D +RW V LSGGPDSLALTAVAA PTTALIVDHGL Sbjct 1 MDRSRAVATLRRTVADFA-AQVDG-ERWCVALSGGPDSLALTAVAAAERPTTALIVDHGL 58 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDG-PVLLA 119 Q GS VAETAR QA+S+GCV A ++ V VG +GG EAAAR ARY+AL+ RDG PVLL Sbjct 59 QTGSRAVAETARAQALSVGCVGAEIIPVVVGRSGGPEAAARKARYTALQAARDGAPVLLG 118 Query 120 HTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDP 179 HTLDDQAETVLLGL RGSG RSIAGMRP+DPPW RPLLG+RR+VTHAAC ELGL W DP Sbjct 119 HTLDDQAETVLLGLARGSGPRSIAGMRPHDPPWHRPLLGIRRTVTHAACEELGLKPWHDP 178 Query 180 HNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVA 239 HN + RFTRTRLR +V+PLLE+VLGGGVAEALARTATALREDT+ +D IA QAL + + Sbjct 179 HNFEPRFTRTRLRLDVMPLLEEVLGGGVAEALARTATALREDTETLDEIARQALETSQTS 238 Query 240 GSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVG 299 L T L LP AVRRRVIR WLL G T LTD QIRGVDRLVT WRGQGGVAVG Sbjct 239 ARTPPGLDTEVLAGLPGAVRRRVIRAWLLTNGGTDLTDVQIRGVDRLVTDWRGQGGVAVG 298 Query 300 STLRGQRLVAGRRDGVLVLRREPV 323 S L QRL GRR G LVL EPV Sbjct 299 SNLSRQRLFVGRRHGELVLYTEPV 322 >gi|342862030|ref|ZP_08718674.1| tRNA(Ile)-lysidine synthase [Mycobacterium colombiense CECT 3035] gi|342130570|gb|EGT83879.1| tRNA(Ile)-lysidine synthase [Mycobacterium colombiense CECT 3035] Length=324 Score = 402 bits (1033), Expect = 4e-110, Method: Compositional matrix adjust. Identities = 241/324 (75%), Positives = 264/324 (82%), Gaps = 6/324 (1%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDR AV +LRAA E F HL ++W V LSGGPDSLALTAVAA+L PTTA+IVDHGL Sbjct 1 MDRPGAVGRLRAAVEAFVETHLVTVEQWCVALSGGPDSLALTAVAAQLRPTTAVIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAH 120 Q SA VAETAR QA+ LGCV A+V+ VQVG GG EAAAR+ARY+AL + GPVLL H Sbjct 61 QSDSAAVAETARAQAVELGCVGAQVVRVQVGNQGGPEAAARAARYAALSAYHTGPVLLGH 120 Query 121 TLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPH 180 TLDDQAETVLLGLGRGSG RSIAGMRPYDPPWCRPLL VRR+ THAAC ELGL+ WQDPH Sbjct 121 TLDDQAETVLLGLGRGSGVRSIAGMRPYDPPWCRPLLEVRRATTHAACAELGLSPWQDPH 180 Query 181 NTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGA-AVA 239 N DRRFTRTRLRTEVLPLLEDVLGGGVAEAL RTAT+LRED++LID +AA+ALPGA A + Sbjct 181 NADRRFTRTRLRTEVLPLLEDVLGGGVAEALTRTATSLREDSELIDALAARALPGAKADS 240 Query 240 GSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVG 299 G R Q L+T L VRRRVIR WLLAGGAT LTD+QIRGVD LVT W GQGGVAVG Sbjct 241 GLRVQALAT-----LDPPVRRRVIRAWLLAGGATNLTDKQIRGVDALVTGWHGQGGVAVG 295 Query 300 STLRGQRLVAGRRDGVLVLRREPV 323 S+L +RL AGRRDGVL L REPV Sbjct 296 SSLSDERLFAGRRDGVLTLWREPV 319 >gi|120406326|ref|YP_956155.1| tRNA(Ile)-lysidine synthetase [Mycobacterium vanbaalenii PYR-1] gi|119959144|gb|ABM16149.1| tRNA(Ile)-lysidine synthetase [Mycobacterium vanbaalenii PYR-1] Length=323 Score = 399 bits (1025), Expect = 3e-109, Method: Compositional matrix adjust. Identities = 243/326 (75%), Positives = 257/326 (79%), Gaps = 11/326 (3%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDR AVA+LR A F R H A W V LSGG DSLALTAVAA L PTTALIVDHGL Sbjct 1 MDRPGAVAELRTAVAGFVRDHAAASGPWCVALSGGADSLALTAVAAALRPTTALIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDG-PVLLA 119 QPGSA VA TAR QA++LGCV A+VLCV+VG GG EAAAR+ARY ALEE R G PVLLA Sbjct 61 QPGSARVAATARDQAMALGCVGAQVLCVEVGVGGGPEAAARAARYRALEEARRGAPVLLA 120 Query 120 HTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDP 179 HTLDDQAETVLLGLGRGSGARSIAGMRP DPPWCRPLLGVRR+VT AC ELGLT WQDP Sbjct 121 HTLDDQAETVLLGLGRGSGARSIAGMRPSDPPWCRPLLGVRRAVTRLACAELGLTPWQDP 180 Query 180 HNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQ--ALPGAA 237 HNTDRRFTR RLRTEVLPLLEDVLGGGVAEALARTATALREDTD +D IAA+ +PGA Sbjct 181 HNTDRRFTRVRLRTEVLPLLEDVLGGGVAEALARTATALREDTDALDGIAARIVTVPGA- 239 Query 238 VAGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVA 297 +L T+ LT LP AVRRRVIRGWLL GGA GLTD+QIR VD LV W GQGGVA Sbjct 240 -------DLDTAVLTPLPAAVRRRVIRGWLLGGGANGLTDKQIRAVDDLVVDWHGQGGVA 292 Query 298 VGSTLRGQRLVAGRRDGVLVLRREPV 323 V L +RL AGRR VL L REPV Sbjct 293 VPGGLARERLFAGRRKDVLTLYREPV 318 >gi|289441054|ref|ZP_06430798.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Mycobacterium tuberculosis T46] gi|289413973|gb|EFD11213.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Mycobacterium tuberculosis T46] Length=308 Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 231/316 (74%), Positives = 239/316 (76%), Gaps = 10/316 (3%) Query 10 LRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGLQPGSATVAE 69 +RAAAEQFARVHLDACDR GLS + ALTAVAAR TT L D +P S Sbjct 1 MRAAAEQFARVHLDACDR-ERGLSAA-RTRALTAVAARC-ATTGLDRDTVCRPRSRKQLA 57 Query 70 TARIQ--AISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAHTLDDQAE 127 R + + GC R G A R R +A+ + Sbjct 58 YKRFRWDVWTRGCFAFRWARPAAGRRRRAAPATRHWRSTAMAR-----CCWPIRSMIRPR 112 Query 128 TVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFT 187 G R SGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFT Sbjct 113 QCCWGFARVSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFT 172 Query 188 RTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELS 247 RTRLRTEVLPLLEDVLGGGV EALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELS Sbjct 173 RTRLRTEVLPLLEDVLGGGVPEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELS 232 Query 248 TSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRL 307 TSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRL Sbjct 233 TSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRL 292 Query 308 VAGRRDGVLVLRREPV 323 VAGRRDGVLVLRREPV Sbjct 293 VAGRRDGVLVLRREPV 308 >gi|126437726|ref|YP_001073417.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. JLS] gi|126237526|gb|ABO00927.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. JLS] Length=320 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 224/325 (69%), Positives = 245/325 (76%), Gaps = 7/325 (2%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDR AVA LR +FAR HL RW V LSGG DSLALTAVAA + PTTALIVDHGL Sbjct 1 MDRPRAVAALRTEVARFARRHLAGTQRWCVALSGGADSLALTAVAADILPTTALIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEE-HRDGPVLLA 119 QP SA VAETAR +A+ LGC DA VL V VG +GG EAAAR+ARY AL H PVLL Sbjct 61 QPDSAAVAETARAEALRLGCPDAHVLRVDVGTSGGPEAAARTARYGALRAAHGGAPVLLG 120 Query 120 HTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDP 179 HTLDDQAETVLLGLGRGSG RSIAGMR DPPW RPLLGVRR+ T AAC ELGL W DP Sbjct 121 HTLDDQAETVLLGLGRGSGPRSIAGMRVCDPPWYRPLLGVRRAATAAACTELGLHPWVDP 180 Query 180 HNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVA 239 HN+D R+TR+RLRTEVLPLLEDVL GGVA ALARTA AL++D D +D AQA GAA+A Sbjct 181 HNSDPRYTRSRLRTEVLPLLEDVLAGGVAAALARTAAALQDDNDTLD---AQA--GAALA 235 Query 240 G-SRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAV 298 + G L T+ L LP A+RRRVIR WLLAGGA GLTD QI+ VD LV+AW GQGGVAV Sbjct 236 EVTTGAGLDTARLAELPAAIRRRVIRSWLLAGGARGLTDTQIQRVDALVSAWHGQGGVAV 295 Query 299 GSTLRGQRLVAGRRDGVLVLRREPV 323 S QRL+AGRRDG+L L EPV Sbjct 296 PSASVRQRLIAGRRDGLLTLHHEPV 320 >gi|108801739|ref|YP_641936.1| tRNA(Ile)-lysidine synthetase-like protein [Mycobacterium sp. MCS] gi|119870890|ref|YP_940842.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. KMS] gi|108772158|gb|ABG10880.1| tRNA(Ile)-lysidine synthetase-like protein [Mycobacterium sp. MCS] gi|119696979|gb|ABL94052.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. KMS] Length=320 Score = 344 bits (883), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 220/324 (68%), Positives = 240/324 (75%), Gaps = 5/324 (1%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDR AVA LR +FAR HL RW V LSGG DSLALTAVAA + PTTALIVDHGL Sbjct 1 MDRPRAVAALRTEVARFARRHLAGTQRWCVALSGGADSLALTAVAADILPTTALIVDHGL 60 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEE-HRDGPVLLA 119 QP SA VAETAR +A+ LGC DA VL V VG +GG EAAAR+ARY AL H PVLL Sbjct 61 QPDSAAVAETARAEALRLGCADAHVLRVDVGTSGGPEAAARTARYGALRAAHGGAPVLLG 120 Query 120 HTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDP 179 HTLDDQAETVLLGLGRGSG RSIAGMR DPPW RPLLGVRR+ T AAC ELGL W DP Sbjct 121 HTLDDQAETVLLGLGRGSGPRSIAGMRVCDPPWYRPLLGVRRAATAAACTELGLHPWVDP 180 Query 180 HNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVA 239 HN+D R+TR+RLRTEVLPLLEDVL GGVA ALARTA AL++D D +D A AL Sbjct 181 HNSDPRYTRSRLRTEVLPLLEDVLAGGVAAALARTAAALQDDNDTLDAQADAALAEV--- 237 Query 240 GSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVG 299 + G L T+ L LP A+RRRVIR WLLAGGA GLTD QI+ VD LV+AW GQGGVAV Sbjct 238 -TAGAGLDTARLAELPAAIRRRVIRSWLLAGGARGLTDTQIQRVDALVSAWHGQGGVAVP 296 Query 300 STLRGQRLVAGRRDGVLVLRREPV 323 S QRL+AGRRDG+L L EPV Sbjct 297 SASVRQRLIAGRRDGLLTLHHEPV 320 >gi|315446257|ref|YP_004079136.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. Spyr1] gi|315264560|gb|ADU01302.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. Spyr1] Length=322 Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 219/325 (68%), Positives = 242/325 (75%), Gaps = 10/325 (3%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDR V +LR A FAR H A W V LSGGPDSLALTAVAA L PTTALIVDH L Sbjct 1 MDRSGPVVELRTALVDFARTHRVAPP-WCVALSGGPDSLALTAVAATLHPTTALIVDHRL 59 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDG-PVLLA 119 QPGSA VA AR QA++LGCV A+VL V VG+ GG EAAAR+ARY AL++ RDG PVLL Sbjct 60 QPGSADVAAAAREQALALGCVAAQVLPVDVGSPGGPEAAARTARYRALDDARDGKPVLLG 119 Query 120 HTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDP 179 HTLDDQAETVLLGLGRGSG RSIAGMRPYD PW RPLLGVRR TH AC ELGL WQDP Sbjct 120 HTLDDQAETVLLGLGRGSGPRSIAGMRPYDLPWGRPLLGVRRDTTHRACAELGLNPWQDP 179 Query 180 HNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQAL-PGAAV 238 HN D R+TR RLRTEVLPLLEDVLGGGVAEALARTA ALREDTD++D +AA+A+ PG A Sbjct 180 HNLDPRYTRVRLRTEVLPLLEDVLGGGVAEALARTAAALREDTDVLDALAAEAVAPGDA- 238 Query 239 AGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAV 298 +L +AL LP A+RRR +RGWLLA GA LTD+ +R VD L+T W GQGGVAV Sbjct 239 ------DLDVTALADLPAALRRRAVRGWLLAAGARDLTDKHLRAVDALITDWHGQGGVAV 292 Query 299 GSTLRGQRLVAGRRDGVLVLRREPV 323 L +RL R L + REPV Sbjct 293 PGGLTRERLFVARNRNRLGMYREPV 317 >gi|145222003|ref|YP_001132681.1| tRNA(Ile)-lysidine synthetase [Mycobacterium gilvum PYR-GCK] gi|145214489|gb|ABP43893.1| tRNA(Ile)-lysidine synthetase [Mycobacterium gilvum PYR-GCK] Length=322 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 218/325 (68%), Positives = 241/325 (75%), Gaps = 10/325 (3%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTTALIVDHGL 60 MDR V +LR A FAR H W V LSGGPDSLALTAVAA L PTTALIVDH L Sbjct 1 MDRSGPVVELRTALVDFARTH-RFPPPWCVALSGGPDSLALTAVAATLHPTTALIVDHRL 59 Query 61 QPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDG-PVLLA 119 QPGSA VA AR QA++LGCV A+VL V VG+ GG EAAAR+ARY AL++ RDG PVLL Sbjct 60 QPGSADVAAAAREQALALGCVAAQVLPVDVGSPGGPEAAARTARYRALDDARDGKPVLLG 119 Query 120 HTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDP 179 HTLDDQAETVLLGLGRGSG RSIAGMRPYD PW RPLLGVRR TH AC ELGL WQDP Sbjct 120 HTLDDQAETVLLGLGRGSGPRSIAGMRPYDLPWGRPLLGVRRDTTHRACAELGLNPWQDP 179 Query 180 HNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQAL-PGAAV 238 HN D R+TR RLRTEVLPLLEDVLGGGVAEALARTA ALREDTD++D +AA+A+ PG A Sbjct 180 HNLDPRYTRVRLRTEVLPLLEDVLGGGVAEALARTAAALREDTDVLDALAAEAVAPGDA- 238 Query 239 AGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAV 298 +L +AL LP A+RRR +RGWLLA GA LTD+ +R VD L+T W GQGGVAV Sbjct 239 ------DLDVTALADLPTALRRRAVRGWLLAAGARDLTDKHLRAVDALITDWHGQGGVAV 292 Query 299 GSTLRGQRLVAGRRDGVLVLRREPV 323 L +RL R L + REPV Sbjct 293 PGGLTRERLFVARNRNRLGMYREPV 317 >gi|169627625|ref|YP_001701274.1| putative tRNA(Ile)-lysidine synthase [Mycobacterium abscessus ATCC 19977] gi|169239592|emb|CAM60620.1| Putative tRNA(Ile)-lysidine synthase [Mycobacterium abscessus] Length=296 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 185/271 (69%), Positives = 201/271 (75%), Gaps = 8/271 (2%) Query 49 WPTTALIVDHGLQPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSAL 108 W TALIVDHGLQ SA VA AR QA++LGC DA VL V V GG EAAARSARY+AL Sbjct 26 WSVTALIVDHGLQQDSAQVAARARSQALALGCSDAVVLSVTVDGVGGLEAAARSARYAAL 85 Query 109 EEHRDG-PVLLAHTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAA 167 E+ RDG PVLLAHTLDDQAETVLLGLGRGSGARSIAGMRP+D PW RP L RR+ T + Sbjct 86 EQARDGRPVLLAHTLDDQAETVLLGLGRGSGARSIAGMRPWDDPWGRPFLDRRRTETRSY 145 Query 168 CRELGLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDT 227 C EL +TAW+DPHN D RF R RLR EVLPLLE+VLGGGVAEALARTA +L++D D +D Sbjct 146 CDELAITAWEDPHNVDSRFVRVRLRHEVLPLLEEVLGGGVAEALARTALSLQDDGDALDA 205 Query 228 IAAQALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLV 287 A A PGA Q L+ S L L AVRRRVIR WLLAGGA L D QIR VD LV Sbjct 206 QARAAFPGA-------QGLAISDLRGLTPAVRRRVIRLWLLAGGAQDLNDNQIRAVDALV 258 Query 288 TAWRGQGGVAVGSTLRGQRLVAGRRDGVLVL 318 T WRGQGGVAVG+ LR QRLVA R LVL Sbjct 259 TQWRGQGGVAVGADLRYQRLVASRSGEQLVL 289 >gi|226304109|ref|YP_002764067.1| tRNA(Ile)-lysidine synthase [Rhodococcus erythropolis PR4] gi|259533748|sp|C0ZNS6.1|TILS_RHOE4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226183224|dbj|BAH31328.1| putative tRNA(Ile)-lysidine synthase [Rhodococcus erythropolis PR4] Length=325 Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 181/294 (62%), Positives = 202/294 (69%), Gaps = 6/294 (2%) Query 27 RWSVGLSGGPDSLALTAVA-ARLWPTTALIVDHGLQPGSATVAETARIQAISLGCVDARV 85 R V LSGG DSLALTA A A ALIVDH LQPGS VA +A QA++LGC A V Sbjct 28 RVVVALSGGADSLALTAAAVAETDSVDALIVDHRLQPGSDAVARSAADQALALGCRTATV 87 Query 86 LCVQVGAAGGREAAARSARYSALEEHR-DGPVLLAHTLDDQAETVLLGLGRGSGARSIAG 144 L V V G EAAAR ARYSAL + R D PVLL HTLDDQAETVLLGL RGSG RSI G Sbjct 88 LTVDVAEGGSLEAAAREARYSALRDARTDLPVLLGHTLDDQAETVLLGLSRGSGGRSIQG 147 Query 145 MRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLG 204 M +D PW RPLLG+RRSVT AAC +LG+T W+DPHN + FTR RLR E LPLLE++LG Sbjct 148 MAAFDAPWGRPLLGIRRSVTRAACVDLGITPWEDPHNNNPEFTRVRLRHEALPLLEEILG 207 Query 205 GGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSALTALPDAVRRRVIR 264 GGVAEALARTAT LRED + +D A L A V G E+ L P A+RRR +R Sbjct 208 GGVAEALARTATQLREDGEALDEYAEALLLRAVVDG----EVEVDTLAEAPTAIRRRALR 263 Query 265 GWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRLVAGRRDGVLVL 318 WLL GGA LTD+Q+R VD LV WRGQGGVA+G RLVA RR G L+L Sbjct 264 AWLLQGGAKALTDKQLRAVDALVIDWRGQGGVAIGGGTPEARLVAARRRGRLIL 317 >gi|333917987|ref|YP_004491568.1| tRNA(Ile)-lysidine synthase [Amycolicicoccus subflavus DQS3-9A1] gi|333480208|gb|AEF38768.1| tRNA(Ile)-lysidine synthase [Amycolicicoccus subflavus DQS3-9A1] Length=341 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 174/298 (59%), Positives = 204/298 (69%), Gaps = 11/298 (3%) Query 26 DRWSVGLSGGPDSLALTAVAARLWP--TTALIVDHGLQPGSATVAETARIQAISLGCVDA 83 D + +SGG DS AL A A P AL +DHGLQPGS VA+ A A LGC A Sbjct 28 DEVVIAMSGGGDSTALCAAAVLELPGRVRALTIDHGLQPGSDEVADKAAQLARDLGCTTA 87 Query 84 RVLCVQVGAAGGREAAARSARYSALEEHRDG-PVLLAHTLDDQAETVLLGLGRGSGARSI 142 V+ V+VG +GG EAAAR ARY AL++ R G PV +AHTLDDQAETVLLGL RGSGARS+ Sbjct 88 DVIRVEVGNSGGLEAAARKARYQALDQARRGSPVFVAHTLDDQAETVLLGLARGSGARSM 147 Query 143 AGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVLPLLEDV 202 AGMR + PPW RPLLG+ RS T AAC ELG+T +DPHN+D RFTR RLR+EVLPLLE+V Sbjct 148 AGMRAFAPPWGRPLLGIHRSTTRAACAELGITPHEDPHNSDARFTRVRLRSEVLPLLEEV 207 Query 203 LGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSALTALPDAVRRRV 262 LGGGVAE+LARTA L++D ++DT+A + L A SRG L T+ L+ P A RRR Sbjct 208 LGGGVAESLARTAAQLQDDVAVLDTLATELLHAALT--SRG--LDTAVLSEAPAATRRRA 263 Query 263 IRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQ----RLVAGRRDGVL 316 IR WLL GA TD Q+R +D LV WRGQG VAV + GQ RLV RR G L Sbjct 264 IRLWLLDNGARAATDSQLRAIDALVCEWRGQGPVAVPNGGSGQAEGARLVVERRHGTL 321 >gi|229489828|ref|ZP_04383685.1| tRNA(Ile)-lysidine synthetase [Rhodococcus erythropolis SK121] gi|229323338|gb|EEN89102.1| tRNA(Ile)-lysidine synthetase [Rhodococcus erythropolis SK121] Length=325 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 178/295 (61%), Positives = 200/295 (68%), Gaps = 8/295 (2%) Query 27 RWSVGLSGGPDSLALTAVA-ARLWPTTALIVDHGLQPGSATVAETARIQAISLGCVDARV 85 R V LSGG DSLALTA A A ALIVDH LQ GS VA +A QA++LGC A V Sbjct 28 RAVVALSGGADSLALTAAAVAETDSVDALIVDHRLQDGSDAVARSAADQALALGCRTATV 87 Query 86 LCVQVGAAGGREAAARSARYSALEEHR-DGPVLLAHTLDDQAETVLLGLGRGSGARSIAG 144 L V V G EAAAR ARYSAL + R D PVLL HTLDDQAETVLLGL RGSG RSI G Sbjct 88 LTVDVAEGGSLEAAAREARYSALRDARTDLPVLLGHTLDDQAETVLLGLSRGSGGRSIQG 147 Query 145 MRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLG 204 M +D PW RPLLG+RRSVT AAC +LG+T W+DPHN + FTR RLR E LPLLE++LG Sbjct 148 MAAFDAPWGRPLLGIRRSVTRAACVDLGITPWEDPHNNNPEFTRVRLRHEALPLLEEILG 207 Query 205 GGVAEALARTATALREDTDLIDTIA-AQALPGAAVAGSRGQELSTSALTALPDAVRRRVI 263 GGV EALARTAT LRED + +D A A LP L+ + P A+RRR + Sbjct 208 GGVPEALARTATQLREDGEALDEYAEALLLPVVVDGEVEVDTLAEA-----PTAIRRRAL 262 Query 264 RGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRLVAGRRDGVLVL 318 R WLL GGA LTD+Q+R VD LVT WRGQGGVA+G RLVA RR G L+L Sbjct 263 RAWLLQGGAKALTDKQLRAVDALVTDWRGQGGVAIGGGTPEARLVAARRRGRLIL 317 >gi|257057522|ref|YP_003135354.1| tRNA(Ile)-lysidine synthetase [Saccharomonospora viridis DSM 43017] gi|256587394|gb|ACU98527.1| tRNA(Ile)-lysidine synthetase [Saccharomonospora viridis DSM 43017] Length=324 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 169/284 (60%), Positives = 189/284 (67%), Gaps = 11/284 (3%) Query 30 VGLSGGPDSLALTAVAARL-----WPTTALIVDHGLQPGSATVAETARIQAISLGCVDAR 84 V +SGG DSLAL AA + AL+VDHGLQ GSA VAE A A+ LG A+ Sbjct 28 VAVSGGADSLALAEAAAHVGRRRGLTVGALVVDHGLQAGSAEVAEWAAQTALRLGVDTAK 87 Query 85 VLCVQVGAAGGREAAARSARYSALEEH--RDGPVLLAHTLDDQAETVLLGLGRGSGARSI 142 VL V V GG EAAAR ARY+AL EH D VL HT DDQAETVLLGLGRGSG RS+ Sbjct 88 VLPVTVSGGGGPEAAARRARYAALREHAGDDALVLFGHTRDDQAETVLLGLGRGSGPRSL 147 Query 143 AGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVLPLLEDV 202 AGMRP DPPW RPLL V RSVT AAC ELG++ W DPHNTD RF R R+R EVLPLLEDV Sbjct 148 AGMRPLDPPWGRPLLDVPRSVTAAACEELGVSPWHDPHNTDPRFRRVRVRHEVLPLLEDV 207 Query 203 LGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSALTALPDAVRRRV 262 L GGVAEALARTA LRED D +D +AA+ A G EL L +P +VRRRV Sbjct 208 LAGGVAEALARTARQLREDCDALDAMAAE----VAEQARDGSELRVDVLVRVPPSVRRRV 263 Query 263 IRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQR 306 +R WLL GG LTD +R VD LV WRGQGGV + + +R Sbjct 264 LRTWLLEGGVRELTDAHLRSVDDLVGRWRGQGGVFLPGDVEARR 307 >gi|262203875|ref|YP_003275083.1| tRNA(Ile)-lysidine synthetase [Gordonia bronchialis DSM 43247] gi|262087222|gb|ACY23190.1| tRNA(Ile)-lysidine synthetase [Gordonia bronchialis DSM 43247] Length=317 Score = 265 bits (677), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 181/301 (61%), Positives = 202/301 (68%), Gaps = 10/301 (3%) Query 1 MDRQSAVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARL-WPTTALIVDHG 59 MD AV + A FA +L + VGLSGGPDSLALTA A R TAL+VDHG Sbjct 1 MDSARAVTR---AVTDFAAEYLPDAEHVCVGLSGGPDSLALTAAAVRAGLRVTALVVDHG 57 Query 60 LQPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDG-PVLL 118 LQ SA VA TA A +LG +L V+VG GG EAAAR+ARYSAL+ RDG PVLL Sbjct 58 LQANSADVASTAAATARALGAAAV-ILPVRVGRDGGLEAAARAARYSALDAARDGSPVLL 116 Query 119 AHTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQD 178 HT+DDQAETVLLGL RGSGARSIAGMR + PPW RPLLGVRR+ T A C ELGLT + D Sbjct 117 GHTMDDQAETVLLGLARGSGARSIAGMRTWTPPWGRPLLGVRRTQTAAMCAELGLTPYAD 176 Query 179 PHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAV 238 PHN D RFTR R+RT+VLPLL+DVL GGV EALARTA +LR D D +D +AA GA V Sbjct 177 PHNRDPRFTRVRVRTDVLPLLDDVLNGGVVEALARTAASLRADNDALDGLAADLGAGAVV 236 Query 239 AGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAV 298 L + L P AVR RVIR WLL GAT T R I VD LVT W GQG VA+ Sbjct 237 DAG----LEIAVLAEAPAAVRTRVIRRWLLDVGATEPTTRVITAVDDLVTRWHGQGAVAI 292 Query 299 G 299 G Sbjct 293 G 293 >gi|296392832|ref|YP_003657716.1| tRNA(Ile)-lysidine synthetase [Segniliparus rotundus DSM 44985] gi|296179979|gb|ADG96885.1| tRNA(Ile)-lysidine synthetase [Segniliparus rotundus DSM 44985] Length=330 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 178/315 (57%), Positives = 205/315 (66%), Gaps = 10/315 (3%) Query 9 QLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPTT-ALIVDHGLQPGSATV 67 +LR A + H A R V LSGG DSLALTA AR AL+VDHGLQP SA Sbjct 18 ELRKALRAWLAQHAPAQARVCVALSGGADSLALTAALAREHTAVEALVVDHGLQPESAQT 77 Query 68 AETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDG-PVLLAHTLDDQA 126 A A A+ LGC +RVL V V AGG EAAAR+AR +AL + G PVLL HTLDDQA Sbjct 78 AARAAQLALDLGCSGSRVLPVTVNGAGGLEAAARTARQAALRQAGAGSPVLLGHTLDDQA 137 Query 127 ETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRF 186 ETVLLGL RGSG RSI GMR +D PW RPLLGVRR++T A C ELG+ +DP NTD RF Sbjct 138 ETVLLGLARGSGPRSIQGMRAWDDPWGRPLLGVRRAMTRAVCAELGVQPHEDPMNTDPRF 197 Query 187 TRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQEL 246 R RLR EVLPLLEDVL GGVAEALARTA A+R D +D AA A A G ++ Sbjct 198 VRARLRAEVLPLLEDVLQGGVAEALARTADAVRADNGHLDEEAA-----AVYAKIGGAKI 252 Query 247 STSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAV---GSTLR 303 + + + LP +RRRV+R WL+ GA LT+ QIR VD L +AWRGQG VAV G Sbjct 253 AVTDVAGLPGPIRRRVLRLWLMGNGAGALTETQIRSVDALASAWRGQGPVAVPAAGPQGG 312 Query 304 GQRLVAGRRDGVLVL 318 G+RL+A R G L L Sbjct 313 GRRLMARRSYGRLEL 327 >gi|343924381|ref|ZP_08763931.1| tRNA(Ile)-lysidine synthase [Gordonia alkanivorans NBRC 16433] gi|343765713|dbj|GAA10857.1| tRNA(Ile)-lysidine synthase [Gordonia alkanivorans NBRC 16433] Length=312 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 172/302 (57%), Positives = 189/302 (63%), Gaps = 13/302 (4%) Query 21 HLDACDRWSVGLSGGPDSLALTAVAARL-WPTTALIVDHGLQPGSATVAETARIQAISLG 79 H C VGLSGG DSLALTA A R TAL+VDHGLQ GS VA A A LG Sbjct 17 HASVC----VGLSGGADSLALTATAVRAGLDVTALVVDHGLQEGSDHVAGRAATTARELG 72 Query 80 CVDARVLCVQVGAAGGREAAARSARYSALEEHRDG-PVLLAHTLDDQAETVLLGLGRGSG 138 ARVL V+VG GG EAAAR ARY+AL+ RDG PVLLAHT DDQAETVLLGL RGSG Sbjct 73 A-HARVLEVRVGTRGGLEAAARDARYTALDAARDGRPVLLAHTADDQAETVLLGLARGSG 131 Query 139 ARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVLPL 198 ARSIAGMR + PW RPLL VRR T A C ELGL DPHN D RFTR RLR EVLPL Sbjct 132 ARSIAGMRAWKAPWGRPLLRVRRMQTLAVCTELGLAVHHDPHNRDPRFTRVRLRAEVLPL 191 Query 199 LEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSALTALPDAV 258 L+DV+ GGV +AL RTA AL++D D +D A A L+ + L LP AV Sbjct 192 LDDVVRGGVVDALGRTAEALQDDNDALDGWAEAVWRSAGTPDG----LAIAPLHDLPRAV 247 Query 259 RRRVIRGWLLAGGATGLTDRQIRGVDRLVT-AWRGQGGVAVGSTLRGQRLVAGRRDGVLV 317 R RVIR WLL GAT T R I VDRLV + G+ VA+G G R V R L Sbjct 248 RTRVIRRWLLDVGATEPTHRVIAAVDRLVVKSGTGRAQVAIGGD-PGVRTVVARSGETLT 306 Query 318 LR 319 +R Sbjct 307 VR 308 >gi|296138291|ref|YP_003645534.1| tRNA(Ile)-lysidine synthetase [Tsukamurella paurometabola DSM 20162] gi|296026425|gb|ADG77195.1| tRNA(Ile)-lysidine synthetase [Tsukamurella paurometabola DSM 20162] Length=312 Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 174/313 (56%), Positives = 201/313 (65%), Gaps = 12/313 (3%) Query 6 AVAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLW-PTTALIVDHGLQPGS 64 A Q+R A + +A A +V +SGGPDSLAL A A AL+VDHGLQP S Sbjct 7 AALQIRRAVQHWA-ARYGAPSTVAVAVSGGPDSLALLAGAVAAGLEPVALVVDHGLQPDS 65 Query 65 ATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDG-PVLLAHTLD 123 A A A QA S G A VL V V AAGG EAAAR+ARY AL+ HRDG PVLL HTLD Sbjct 66 AATAARAAGQARSAGARRADVLTVIVDAAGGPEAAARTARYRALDAHRDGLPVLLGHTLD 125 Query 124 DQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTD 183 DQAETVLLGLGRGSGARS+AGM + P+ RPLLGVRR+VT AC ELGL W DPHNTD Sbjct 126 DQAETVLLGLGRGSGARSLAGMAAWAEPYGRPLLGVRRAVTRQACAELGLDPWDDPHNTD 185 Query 184 RRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRG 243 R+TR RLR EVLPLLE+VLGGGVA+ALARTA +LR+D D +D + G Sbjct 186 ARYTRVRLRHEVLPLLEEVLGGGVAQALARTAASLRDDNDALDAL---------TPAPSG 236 Query 244 QELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLR 303 EL + + LP A+RRR +R WL GA LT + VD LV+ W GQG AV Sbjct 237 DELPVADIEHLPPALRRRALRAWLAGRGARALTAAHLAAVDALVSDWHGQGPAAVPGGSA 296 Query 304 GQRLVAGRRDGVL 316 G+RL R G+L Sbjct 297 GRRLQVHRTGGIL 309 >gi|226363729|ref|YP_002781511.1| tRNA(Ile)-lysidine synthase [Rhodococcus opacus B4] gi|254789041|sp|C1BA63.1|TILS_RHOOB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226242218|dbj|BAH52566.1| tRNA(Ile)-lysidine synthase [Rhodococcus opacus B4] Length=325 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 146/239 (62%), Positives = 163/239 (69%), Gaps = 5/239 (2%) Query 54 LIVDHGLQPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRD 113 L+VDH LQ GSA VA+ A +A +LGC A VL V V +GG EAAAR ARY AL+ R Sbjct 56 LVVDHRLQRGSADVADGAAARARTLGCASAEVLPVDVTGSGGLEAAARQARYEALDAGRG 115 Query 114 G-PVLLAHTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELG 172 PVLL HTLDDQAETVLLGL RGSG RSI GM PYD PW RPLLGVRR+VT AC ELG Sbjct 116 TRPVLLGHTLDDQAETVLLGLSRGSGGRSIWGMSPYDSPWGRPLLGVRRAVTRQACTELG 175 Query 173 LTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQA 232 L +DPHN+ F R RLRTEVLPLLEDVLGGGVA ALART LRE+ ++D +AA A Sbjct 176 LDPHEDPHNSSPDFVRVRLRTEVLPLLEDVLGGGVAGALARTGEHLREEGAVLDAVAADA 235 Query 233 LPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWR 291 V G E+ + L VRRRV+R WLLA GA GL D Q+R VD LV WR Sbjct 236 EAKVVVDG----EIDAALLALSAPPVRRRVLRSWLLAAGARGLGDTQLRAVDDLVARWR 290 >gi|302530792|ref|ZP_07283134.1| predicted protein [Streptomyces sp. AA4] gi|302439687|gb|EFL11503.1| predicted protein [Streptomyces sp. AA4] Length=348 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 175/315 (56%), Positives = 198/315 (63%), Gaps = 19/315 (6%) Query 3 RQSAVAQLRAAAEQF---ARVHLDACDRWSVGLSGGPDSLALTAVAA-----RLWPTTAL 54 R SA+A +R A F V + C V +SGG DSLAL A R T AL Sbjct 25 RVSALAAVRTAVRDFLATVAVPGEVC----VAVSGGADSLALAEATAYVLRHRDVRTRAL 80 Query 55 IVDHGLQPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEE---H 111 +VDHGLQ SA VA A LG V V V GG EAAAR+ARY AL E + Sbjct 81 VVDHGLQADSAAVASEAATVVKGLGVDAVEVHAVHVVGKGGPEAAARAARYHALREALPN 140 Query 112 RDGPVLLAHTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACREL 171 +G VLL HT DDQAETVLLGLGRGSG RS+AGMRP+DPPW RPLLG+ R+ T AAC EL Sbjct 141 GEGLVLLGHTQDDQAETVLLGLGRGSGPRSLAGMRPHDPPWGRPLLGITRAQTVAACTEL 200 Query 172 GLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQ 231 GL WQDPHN D RFTR RLRTE LPLLEDVL GGVA ALARTA LREDT+ +DT+AA+ Sbjct 201 GLEPWQDPHNADPRFTRVRLRTEALPLLEDVLSGGVAPALARTAAQLREDTEALDTLAAR 260 Query 232 ALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWR 291 A R +L + L A P A+RRRV+R WLL G LTD +R VD LV WR Sbjct 261 VHERAV----REDDLDVAVLAAEPAALRRRVLRRWLLDSGVRELTDAHLRSVDALVARWR 316 Query 292 GQGGVAVGSTLRGQR 306 GQGGV + L +R Sbjct 317 GQGGVWLPGNLEARR 331 >gi|134097007|ref|YP_001102668.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338] gi|291006247|ref|ZP_06564220.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338] gi|133909630|emb|CAL99742.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338] Length=330 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 159/273 (59%), Positives = 177/273 (65%), Gaps = 11/273 (4%) Query 29 SVGLSGGPDSLALTAVAA-----RLWPTTALIVDHGLQPGSATVAETARIQAISLGCVDA 83 +V SGG DSLAL A R L+VDHGLQ GSA VA A Q LGC Sbjct 33 AVACSGGADSLALAAATTHVARRRDIAVHGLVVDHGLQEGSADVASRAAEQLEELGCDVV 92 Query 84 RVLCVQVGAAGGREAAARSARYSALEEHRDG--PVLLAHTLDDQAETVLLGLGRGSGARS 141 RVL V++G GG EAAAR ARY+AL+ R PVLL HT DDQAETVLLGLGRGSGARS Sbjct 93 RVLPVEIGREGGPEAAARRARYAALDAARPAGAPVLLGHTRDDQAETVLLGLGRGSGARS 152 Query 142 IAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVLPLLED 201 IAGMRP D PW RP L V R T AAC LGL WQDPHN+D +FTR RLR EVLPLLE+ Sbjct 153 IAGMRPVDLPWLRPFLDVTRDTTLAACEALGLRPWQDPHNSDAKFTRVRLRAEVLPLLEE 212 Query 202 VLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSALTALPDAVRRR 261 VL GGVA ALARTA LRED D +D +AA G L +AL+A P AVRRR Sbjct 213 VLQGGVASALARTAVQLREDADALDEVAADVRKRV----EDGDALDAAALSAGPPAVRRR 268 Query 262 VIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQG 294 V+RGWLL G ++D +R D LV W+GQG Sbjct 269 VLRGWLLDQGVREVSDAHLRAADALVGHWKGQG 301 >gi|331699846|ref|YP_004336085.1| tRNA(Ile)-lysidine synthase [Pseudonocardia dioxanivorans CB1190] gi|326954535|gb|AEA28232.1| tRNA(Ile)-lysidine synthase [Pseudonocardia dioxanivorans CB1190] Length=328 Score = 235 bits (599), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 194/327 (60%), Positives = 210/327 (65%), Gaps = 19/327 (5%) Query 5 SAVAQLRAAAEQFARVHLDACDRWS---VGLSGGPDSLALTAVAARLWP--TTALIVDHG 59 SAVA LR A + A V L A R + VG SGG DSLALT AA P TA IVDHG Sbjct 8 SAVASLRLAVRR-ALVALPAPVREAPVVVGCSGGADSLALTLAAAAELPGRVTAAIVDHG 66 Query 60 LQPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHR---DGPV 116 LQ GSA + + G V A V V VG GG EAAAR ARY+AL R D PV Sbjct 67 LQEGSAARSAALAADLGARG-VPAGVHPVVVGGPGGLEAAARRARYAALLAARPAPDSPV 125 Query 117 LLAHTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAW 176 LL HTLDDQAETVLLGLGRGSG RSIAGMRP+DPPW RPLLGVRR+ T AAC ELG TAW Sbjct 126 LLGHTLDDQAETVLLGLGRGSGPRSIAGMRPWDPPWARPLLGVRRATTRAACAELGATAW 185 Query 177 QDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGA 236 DPHN D RFTR RLR EVLPLLEDVL GGVAEAL RTA LRED D++D +A + Sbjct 186 NDPHNDDPRFTRVRLRREVLPLLEDVLAGGVAEALVRTAAQLREDGDVLDALAGEL---L 242 Query 237 AVAGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGV 296 A A L + L+ P AVRRR +R WLL G LTD +R VD LV WRGQGGV Sbjct 243 AAARLPEGGLRAATLSPAPQAVRRRALREWLLTSGVRDLTDLHLRAVDDLVGRWRGQGGV 302 Query 297 AVGSTLRGQRLVAGRRDGVLVLRR-EP 322 A+ G LV RRDG L L R EP Sbjct 303 ALPG---GLDLV--RRDGRLSLHRAEP 324 >gi|326384091|ref|ZP_08205774.1| tRNA(Ile)-lysidine synthetase [Gordonia neofelifaecis NRRL B-59395] gi|326197251|gb|EGD54442.1| tRNA(Ile)-lysidine synthetase [Gordonia neofelifaecis NRRL B-59395] Length=317 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 165/293 (57%), Positives = 190/293 (65%), Gaps = 8/293 (2%) Query 30 VGLSGGPDSLALTAVAARL-WPTTALIVDHGLQPGSATVAETARIQAISLGCVDARVLCV 88 V LSGG DSLALTA A R A++VDHGLQ GSA VA A A G A V V Sbjct 28 VALSGGADSLALTAAAVRARLVVHAVVVDHGLQAGSAEVAARAAAAARESGAT-AEVRTV 86 Query 89 QVGAAGGREAAARSARYSALEEHRDG-PVLLAHTLDDQAETVLLGLGRGSGARSIAGMRP 147 +VG+AGG EAAAR+ARY AL R G PVLL HTLDDQAETVLLGLGRGSGARS++GM Sbjct 87 EVGSAGGPEAAARTARYDALRAARGGRPVLLGHTLDDQAETVLLGLGRGSGARSLSGMSE 146 Query 148 YDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGV 207 + PW RPLLG+RR+ T AC + GL W DPHN D FTR R+R+EVLPLLEDVLGGGV Sbjct 147 WSAPWGRPLLGLRRAQTREACADWGLPIWDDPHNVDPGFTRVRVRSEVLPLLEDVLGGGV 206 Query 208 AEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWL 267 AEALARTA L+ D D +D AA L A G+ L L + P A+R RV+RGWL Sbjct 207 AEALARTAAQLQADADALDGPAADLLAECAY----GRVLDLEPLESAPTALRTRVLRGWL 262 Query 268 LAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRLVAGRRDGVLVLRR 320 + GA + R + + LVT W GQG +AVG RLV RR G L +R Sbjct 263 QSVGAPEPSYRVVASIGALVTDWHGQGPIAVGGDATA-RLVVTRRAGRLHAQR 314 >gi|312138048|ref|YP_004005384.1| tRNA(ile)-lysidine synthase [Rhodococcus equi 103S] gi|311887387|emb|CBH46699.1| putative tRNA(Ile)-lysidine synthase [Rhodococcus equi 103S] Length=329 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 181/290 (63%), Positives = 203/290 (70%), Gaps = 8/290 (2%) Query 30 VGLSGGPDSLALTAVAARLWPTT-ALIVDHGLQPGSATVAETARIQAISLGCVDARVLCV 88 V LSGG DSLALT A P+ A++VDH LQ GSA VA A +A+ GC A V+ V Sbjct 38 VALSGGADSLALTVAAVAEAPSVRAVVVDHRLQDGSAEVAAVAAARALEFGCAGADVVPV 97 Query 89 QVGAAGGREAAARSARYSALEEHRDG-PVLLAHTLDDQAETVLLGLGRGSGARSIAGMRP 147 V GG EAAAR+ARY+AL+ R G PVLL HTLDDQAETVLLGL RGSG RSI GM Sbjct 98 DVTGPGGLEAAARAARYAALDAARAGRPVLLGHTLDDQAETVLLGLARGSGGRSIRGMAG 157 Query 148 YDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGV 207 YD PW RPLLGVRR VT AC ELGL A +DPHN D FTR RLRTEVLPLLED LGGGV Sbjct 158 YDAPWGRPLLGVRRDVTRRACAELGLVAHEDPHNADPAFTRVRLRTEVLPLLEDALGGGV 217 Query 208 AEALARTATALREDTDLIDTIAAQALPGAAVAGSR-GQELSTSALTALPDAVRRRVIRGW 266 AEALARTA LRED +++DT+A + AVA +R G +L L +P AVRRRV+R W Sbjct 218 AEALARTAEHLREDGEVLDTLAER-----AVASARDGNDLVIEYLVDVPVAVRRRVLRLW 272 Query 267 LLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRLVAGRRDGVL 316 LL GA LTD+Q+R VD LV WRGQGGVA+G G RLVA RR G L Sbjct 273 LLDLGAKALTDKQLRAVDDLVGRWRGQGGVALGGGRTGVRLVASRRRGRL 322 >gi|111021375|ref|YP_704347.1| cell cycle protein [Rhodococcus jostii RHA1] gi|123144654|sp|Q0S8E7.1|TILS_RHOSR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|110820905|gb|ABG96189.1| possible cell cycle protein [Rhodococcus jostii RHA1] Length=325 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 153/248 (62%), Positives = 172/248 (70%), Gaps = 5/248 (2%) Query 53 ALIVDHGLQPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHR 112 AL+VDH LQPGSA VA+ A +A +LGC A VL V V +GG EAAAR ARY AL+ R Sbjct 55 ALVVDHRLQPGSADVADEAAARARALGCASAEVLPVDVTGSGGLEAAARQARYRALDSAR 114 Query 113 DG-PVLLAHTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACREL 171 PVLL HTLDDQAETVLLGL RGSG RSI GM YD PW RPLL VRR++T AC EL Sbjct 115 GTRPVLLGHTLDDQAETVLLGLSRGSGGRSIWGMSAYDTPWGRPLLDVRRALTRQACAEL 174 Query 172 GLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQ 231 GL+ +DPHN F R RLRTEVLPLLEDVLGGGVA ALART LRE+ ++D +AA Sbjct 175 GLSPHEDPHNASPDFVRVRLRTEVLPLLEDVLGGGVAGALARTGEHLREEGAVLDAMAAD 234 Query 232 ALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWR 291 A A V G E+ T+ L VRRRV+R WLLA GA GL D Q+R VD LV WR Sbjct 235 AQAKAVVEG----EIDTALLALSAPPVRRRVLRSWLLAAGARGLGDTQLRAVDDLVARWR 290 Query 292 GQGGVAVG 299 GQG VA+G Sbjct 291 GQGQVAIG 298 >gi|300790558|ref|YP_003770849.1| cell cycle protein MesJ [Amycolatopsis mediterranei U32] gi|299800072|gb|ADJ50447.1| cell cycle protein MesJ [Amycolatopsis mediterranei U32] gi|340532245|gb|AEK47450.1| cell cycle protein MesJ [Amycolatopsis mediterranei S699] Length=319 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 165/290 (57%), Positives = 188/290 (65%), Gaps = 11/290 (3%) Query 22 LDACDRWSVGLSGGPDSLALTAVAA-----RLWPTTALIVDHGLQPGSATVAETARIQAI 76 L+A V +SGG DSLAL AA R AL+VDHGLQ GSA +A A A Sbjct 20 LEAPPELCVAVSGGADSLALAEAAAYVGHHRGHVVRALVVDHGLQEGSAKIAADAAAAAK 79 Query 77 SLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAHTLDDQAETVLLGLGRG 136 +LG +A V V AGG EAAAR ARY L H VLL HTLDDQAETVLLGLGRG Sbjct 80 ALGVDEAEVRRADVTGAGGPEAAARKARYRVLAGHD--LVLLGHTLDDQAETVLLGLGRG 137 Query 137 SGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVL 196 SG RS+AGMRP+DPPW RPLL V R+ T AAC ELG+ W DPHN + RFTR RLRTEVL Sbjct 138 SGPRSVAGMRPHDPPWGRPLLAVGRATTRAACAELGVEPWDDPHNAEPRFTRVRLRTEVL 197 Query 197 PLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSALTALPD 256 PLLEDVL GGVA ALARTA LR+D + +DT+A + A G G +++T L P Sbjct 198 PLLEDVLNGGVAAALARTAAQLRDDNEALDTLAEEIFTRA--GGPDGLDVAT--LAPEPS 253 Query 257 AVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQR 306 AVRRRV+R WLLA LTD +R VD LV WRGQGGV + L +R Sbjct 254 AVRRRVLRRWLLASDVRELTDAHLRAVDALVARWRGQGGVWLPGNLEARR 303 >gi|54022352|ref|YP_116594.1| hypothetical protein nfa3880 [Nocardia farcinica IFM 10152] gi|61216446|sp|Q5Z2W1.1|TILS_NOCFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|54013860|dbj|BAD55230.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=318 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 185/292 (64%), Positives = 201/292 (69%), Gaps = 6/292 (2%) Query 32 LSGGPDSLALTAVAARLWPTTA-LIVDHGLQPGSATVAETARIQAISLGCVDARVLCVQV 90 LSGG DSLALTA A T L+VDHGLQPGS VA A QA +LGC ARVL V+V Sbjct 25 LSGGADSLALTAAAVVEAATVDALVVDHGLQPGSDAVAVAAAAQARTLGCRSARVLRVRV 84 Query 91 GAAGGREAAARSARYSALEEHRDG-PVLLAHTLDDQAETVLLGLGRGSGARSIAGMRPYD 149 G+ GG EAAAR ARY+AL R G PVLL HTLDDQAETVLLGL RGSGARSI GM Y Sbjct 85 GSDGGLEAAAREARYAALGSARAGLPVLLGHTLDDQAETVLLGLARGSGARSIRGMAAYT 144 Query 150 PPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAE 209 PPW RPLLGVRR+ T C +LGLT +DPHN FTR RLRTEVLPLLEDVLGGGVAE Sbjct 145 PPWGRPLLGVRRADTRRLCADLGLTPHEDPHNRSAEFTRVRLRTEVLPLLEDVLGGGVAE 204 Query 210 ALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWLLA 269 ALART LRED ++D +AA AA AG E L P A+RRR +R WLL Sbjct 205 ALARTGRQLREDGAVLDALAADLASAAADAGDLRIE----TLATAPAALRRRAVRAWLLD 260 Query 270 GGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRLVAGRRDGVLVLRRE 321 GA TDRQ+R +D LVTAWRGQGGVAVG G RLVA R G L LRR+ Sbjct 261 SGAKAPTDRQLRAIDALVTAWRGQGGVAVGGGTPGMRLVAARERGRLTLRRQ 312 >gi|319949370|ref|ZP_08023439.1| tRNA(Ile)-lysidine synthetase [Dietzia cinnamea P4] gi|319436953|gb|EFV92004.1| tRNA(Ile)-lysidine synthetase [Dietzia cinnamea P4] Length=223 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 131/218 (61%), Positives = 142/218 (66%), Gaps = 14/218 (6%) Query 112 RDGPVLLAHTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACREL 171 RD PVLLAHTLDDQAETVLLGLGRGSGARS+ GM +D PW RPLLGVR + T AAC L Sbjct 5 RDRPVLLAHTLDDQAETVLLGLGRGSGARSLRGMAAWDAPWGRPLLGVRAADTRAACLGL 64 Query 172 GLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQ 231 GLT W DPHNTD +TR R+R EVLPLLE+VLGGGVAE LARTA R D D +D +A Sbjct 65 GLTWWDDPHNTDPTYTRVRVRREVLPLLEEVLGGGVAEGLARTAELARVDDDELDRLA-- 122 Query 232 ALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWR 291 G G G L L LP AV RV+R WLL+ G T T + V LVT WR Sbjct 123 ---GDVPVGDDGA-LDVGRLERLPAAVLTRVLRRWLLSRGVTSPTYAHLTAVAALVTDWR 178 Query 292 GQGGVAVGST----LRG----QRLVAGRRDGVLVLRRE 321 GQGGVAVG T RG RLVA RR G LVL E Sbjct 179 GQGGVAVGGTGPAGTRGAGPTARLVARRRHGKLVLENE 216 >gi|68535341|ref|YP_250046.1| cell cycle protein MesJ [Corynebacterium jeikeium K411] gi|68262940|emb|CAI36428.1| cell cycle protein MesJ [Corynebacterium jeikeium K411] Length=350 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 142/315 (46%), Positives = 172/315 (55%), Gaps = 29/315 (9%) Query 29 SVGLSGGPDSLALTAVAARLW-PTTALIVDHGLQPGSATVAETARIQAISLGCVDARVLC 87 + GLSGG DSLAL R A++VDH LQ GSA VA A A+SLG A + Sbjct 43 AAGLSGGADSLALVHGLLRCGVKVHAVVVDHQLQEGSAQVARQAADTALSLGAT-AEIRT 101 Query 88 VQVGAAGGREAAARSARYSALEEHRDG-PVLLAHTLDDQAETVLLGLGRGSGARSIAGMR 146 V V G E AR ARY AL G P+L+AHT DD AE +L+GL RGSGA +IAGMR Sbjct 102 VDVEGPG--EGPARQARYEALGAAAAGRPLLVAHTADDDAEGMLIGLVRGSGAEAIAGMR 159 Query 147 PYDPP---------WC-RPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVL 196 W RPLL R+ T A CR GL W+DPHN+ + R+R+RT VL Sbjct 160 SVHTDHAAVAAGAAWLGRPLLNCTRAETEAECRAAGLNWWEDPHNSSDAYLRSRIRTHVL 219 Query 197 PLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSALTALPD 256 P LEDVLG + +ARTA LRED +L+D +A + L A G L+ + L P Sbjct 220 PYLEDVLGEHIGANMARTARMLREDVELLDELAGRELQ----AAEEGASLNCTELQQQPA 275 Query 257 AVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAV---------GSTLRGQRL 307 A+RRRV++ W LA A LT + +D LV AW+GQGG AV R RL Sbjct 276 ALRRRVLKQW-LADKAGPLTSAHLNAIDALVIAWKGQGGAAVPWPQSPPALNEQRRTHRL 334 Query 308 VAGRRDGVLVLRREP 322 V RRDG L L P Sbjct 335 VVQRRDGYLQLATVP 349 >gi|325675051|ref|ZP_08154738.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Rhodococcus equi ATCC 33707] gi|325554637|gb|EGD24312.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Rhodococcus equi ATCC 33707] Length=244 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 152/241 (64%), Positives = 169/241 (71%), Gaps = 5/241 (2%) Query 77 SLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDG-PVLLAHTLDDQAETVLLGLGR 135 GC A V+ V V GG EAAAR+ARY+AL+ R G PVLL HTLDDQAETVLLGL R Sbjct 1 EFGCAGADVVPVDVTGPGGLEAAARAARYAALDAARVGRPVLLGHTLDDQAETVLLGLAR 60 Query 136 GSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEV 195 GSG RSI GM YD PW RPLL VRR VT AC ELGL A +DPHN D FTR RLRTEV Sbjct 61 GSGGRSIRGMAGYDAPWGRPLLRVRRDVTRRACAELGLVAHEDPHNADPAFTRVRLRTEV 120 Query 196 LPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSALTALP 255 LPLLED LGGGVAEALARTA LRED +++DT+A +A+ A G +L L +P Sbjct 121 LPLLEDALGGGVAEALARTAEHLREDGEVLDTLAERAVASA----RDGNDLVIEYLVDVP 176 Query 256 DAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRLVAGRRDGV 315 AVRRRV+R WLL GA LTD+Q+R VD LV WRGQGGVA+G G RLVA RR G Sbjct 177 VAVRRRVLRLWLLDLGAKALTDKQLRAVDDLVGRWRGQGGVALGGGRTGVRLVASRRRGR 236 Query 316 L 316 L Sbjct 237 L 237 >gi|297563883|ref|YP_003682856.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848332|gb|ADH70350.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=334 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 143/314 (46%), Positives = 173/314 (56%), Gaps = 24/314 (7%) Query 4 QSAVAQLRAAAEQFARVHLDACDRWS--VGLSGGPDSLALTAVAARLWPTT-----ALIV 56 AVA +R+A + R D D + V SGG DSLAL A P A+ V Sbjct 5 HPAVAAVRSAVRRVLR---DLPDDTTALVACSGGADSLALAGAVAFEAPRVGRTAGAVTV 61 Query 57 DHGLQPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALE----EHR 112 DHGLQ GS AE LG V V+V GG EA+AR ARY AL+ E Sbjct 62 DHGLQEGSDRRAEDVAKVLAGLGLDPVLVRTVRVTGPGGPEASARRARYEALDGAVAERA 121 Query 113 DGPVLLAHTLDDQAETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELG 172 VLL HTLDDQAETVLLGL RGSGARS+AGM P RPLL + R+ AC +G Sbjct 122 PAVVLLGHTLDDQAETVLLGLARGSGARSLAGMAPRVGHRLRPLLDLDRATVREACARMG 181 Query 173 LTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQA 232 L AW+DPHN D RF R+R+R E LP LE LG G+A ALARTA LR D D +D ++ Sbjct 182 LDAWEDPHNLDPRFARSRVRHEALPALERALGPGIAAALARTAGMLRADADTLDLLSDGL 241 Query 233 LPGAAVAGS--------RGQELSTSALTALPDAVRRRVIRGWLLAGG--ATGLTDRQIRG 282 A+ G G L+ + L P+++R RV+R LA G A+ LT R +R Sbjct 242 FEEASGPGEGDGRDARPVGPVLAVAPLERAPESLRTRVLRRAALAAGCPASALTARHVRE 301 Query 283 VDRLVTAWRGQGGV 296 +DRLVT WRGQ + Sbjct 302 LDRLVTEWRGQAHI 315 >gi|260578435|ref|ZP_05846349.1| cell cycle protein MesJ [Corynebacterium jeikeium ATCC 43734] gi|258603457|gb|EEW16720.1| cell cycle protein MesJ [Corynebacterium jeikeium ATCC 43734] Length=351 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 140/315 (45%), Positives = 171/315 (55%), Gaps = 29/315 (9%) Query 29 SVGLSGGPDSLALTAVAARL-WPTTALIVDHGLQPGSATVAETARIQAISLGCVDARVLC 87 +VGLSGG DSLAL R A++VDH LQ SA VA A A+SLG A + Sbjct 44 AVGLSGGADSLALVHGLLRCGVKVHAVVVDHQLQEASAQVARQAAETAMSLGA-SAEIRT 102 Query 88 VQVGAAGGREAAARSARYSALEEHRDG-PVLLAHTLDDQAETVLLGLGRGSGARSIAGMR 146 V+V G E AR ARY AL G P+L+AHT DD AE +L+GL RGSGA +IAGMR Sbjct 103 VEVEGLG--EGPARQARYQALGTAAAGRPLLVAHTADDDAEGLLIGLVRGSGAEAIAGMR 160 Query 147 PYDP---------PWC-RPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVL 196 W RPLL R+ T A CR GL W+DPHN+ + R+R+RT VL Sbjct 161 SVHTDHAAVDAGAAWLGRPLLNCTRAETEAECRAAGLNWWEDPHNSSDAYLRSRIRTRVL 220 Query 197 PLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSALTALPD 256 P L+D LG + +ARTA LRED +L+D +A + L A G L+ + L P Sbjct 221 PYLQDALGEHIGANMARTARMLREDVELLDELARRELQ----AAEEGASLNCTELQQQPA 276 Query 257 AVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAV---------GSTLRGQRL 307 A+RRRV + W LA LT + +D LV AW+GQGG AV G R RL Sbjct 277 ALRRRVFKQW-LADKTGPLTSAHLNAIDALVIAWKGQGGAAVPWPQSPPTPGQQRRTHRL 335 Query 308 VAGRRDGVLVLRREP 322 V RRDG L L P Sbjct 336 VVQRRDGYLQLATVP 350 >gi|290958428|ref|YP_003489610.1| hypothetical protein SCAB_39801 [Streptomyces scabiei 87.22] gi|260647954|emb|CBG71059.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length=388 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 148/305 (49%), Positives = 173/305 (57%), Gaps = 22/305 (7%) Query 30 VGLSGGPDSLALTAVAARLWPTTA-----LIVDHGLQPGSATVAETARIQAISLGCVDAR 84 V SGG DS+AL + A P + VDHGLQPGS AE ++ LG A Sbjct 91 VACSGGADSMALASALAFEAPKLGVRAGGITVDHGLQPGSDLRAEEVVLRLRELGLDPAE 150 Query 85 VLCVQVGAAGGREAAARSARY----SALEEHRDGPVLLAHTLDDQAETVLLGLGRGSGAR 140 + V VG GG EAAAR ARY +ALE H VLL HT DDQAETVLLGL RGSG R Sbjct 151 SVAVTVGRDGGPEAAARDARYAALDAALERHGAAAVLLGHTRDDQAETVLLGLARGSGIR 210 Query 141 SIAGMRPY---DPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVLP 197 S++GM D + RP L + R AC L W DPHNTD +TR+RLR E LP Sbjct 211 SLSGMAAVSGADGRYRRPFLQLDRQTARKACMVQSLPVWDDPHNTDPAYTRSRLRHEGLP 270 Query 198 LLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSALTALPDA 257 LE LG GV EALARTA R+D D +DT A QA PG A L + L ALP A Sbjct 271 ALEKALGKGVVEALARTAQLSRDDADALDTWARQAEPGVRDAAGL---LECAKLYALPPA 327 Query 258 VRRRVIRGWLLAGGATG--LTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRLVAGRRDGV 315 VRRR++R + GA L R I VDRL+T WRGQG + L G R+VA R+ G Sbjct 328 VRRRILRRVAIEAGAPAGSLFARHIEEVDRLITGWRGQGAI----NLPG-RVVAQRQGGR 382 Query 316 LVLRR 320 LV+R+ Sbjct 383 LVIRQ 387 >gi|284989211|ref|YP_003407765.1| tRNA(Ile)-lysidine synthetase [Geodermatophilus obscurus DSM 43160] gi|284062456|gb|ADB73394.1| tRNA(Ile)-lysidine synthetase [Geodermatophilus obscurus DSM 43160] Length=341 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 137/250 (55%), Positives = 152/250 (61%), Gaps = 11/250 (4%) Query 54 LIVDHGLQPGSATVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRD 113 + VDHGLQPGSA AE LG V V V A GG E AAR+ARY AL Sbjct 57 ITVDHGLQPGSAERAERTAQLLRGLGLDPVLVRRVAVAAGGGPEGAARTARYEALAAAAA 116 Query 114 GP---VLLAHTLDDQAETVLLGLGRGSGARSIAGMRPY----DPPWCRPLLGVRRSVTHA 166 V L HTLDDQAETVLLGLGRGSG RS+AGM P W RPLLGVRR+ T Sbjct 117 QLGARVALGHTLDDQAETVLLGLGRGSGPRSVAGMVPERTADGTTWWRPLLGVRRATTRE 176 Query 167 ACRELGLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLID 226 AC + GL W DP N D +TR RLR EVLPLLEDVLGGGVA ALARTA LRED D +D Sbjct 177 ACADQGLPVWDDPWNADPAYTRARLRGEVLPLLEDVLGGGVAPALARTADLLREDLDALD 236 Query 227 TIAAQALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRL 286 +AA + EL+ L ALP A+RRRV+RGWL A G + +R V+ L Sbjct 237 ELAAA----ELARLAGADELAARELGALPAALRRRVLRGWLRAAGVPDVQAVHLRAVEAL 292 Query 287 VTAWRGQGGV 296 VT WRGQG V Sbjct 293 VTGWRGQGRV 302 >gi|256374465|ref|YP_003098125.1| tRNA(Ile)-lysidine synthetase [Actinosynnema mirum DSM 43827] gi|255918768|gb|ACU34279.1| tRNA(Ile)-lysidine synthetase [Actinosynnema mirum DSM 43827] Length=308 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 162/282 (58%), Positives = 186/282 (66%), Gaps = 14/282 (4%) Query 7 VAQLRAAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWP-TTALIVDHGLQPGSA 65 ++++R A +F H A R +V +SGG DSLAL A A L A++VDHGLQ GSA Sbjct 9 LSRVRTAVRRFLAEHRPA--RVAVAVSGGADSLALAACTAALTSGARAVVVDHGLQEGSA 66 Query 66 TVAETARIQAISLGCVDARVLCVQVGAAGGREAAARSARYSALEEHRDGPVLLAHTLDDQ 125 VAE A LG +DA+V V+V GG EAAAR ARY+AL R G VLL HTLDDQ Sbjct 67 EVAERAARTCAELG-LDAQVRRVEVTGGGGPEAAARRARYAALRPER-GLVLLGHTLDDQ 124 Query 126 AETVLLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRR 185 AETVLLGLGRGSG RSIAGMR D PW RPLLGV R+ T AC ELGL+ W DPHN D Sbjct 125 AETVLLGLGRGSGPRSIAGMRELDAPWGRPLLGVSRADTEGACAELGLSPWSDPHNADPA 184 Query 186 FTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQE 245 FTR RLR EVLPLLE+VL GGVA ALARTA LRED D +D +A AG RG Sbjct 185 FTRVRLRREVLPLLEEVLQGGVARALARTAAQLREDNDALDDLADAF------AGDRG-- 236 Query 246 LSTSALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLV 287 + + L LP A+RRRV+R WLLA G L+D +R VD LV Sbjct 237 -AVADLAPLPVALRRRVLRRWLLAEGVPELSDSHLRAVDALV 277 >gi|336324741|ref|YP_004604707.1| putative tRNA Ile-lysidine synthase [Corynebacterium resistens DSM 45100] gi|336100723|gb|AEI08543.1| putative tRNA Ile-lysidine synthase [Corynebacterium resistens DSM 45100] Length=376 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 131/289 (46%), Positives = 163/289 (57%), Gaps = 20/289 (6%) Query 30 VGLSGGPDSLALTAVAARL-WPTTALIVDHGLQPGSATVAETARIQAISLGCVDARVLCV 88 VGLSGG DSLAL VA R A+IVDHGLQ GS VAETAR QA LG ARV+ V Sbjct 35 VGLSGGADSLALLIVAIRFGMEVHAVIVDHGLQDGSEQVAETARQQAEDLGAASARVIAV 94 Query 89 QVGAAGGREAAARSARYSALEEHRDG-PVLLAHTLDDQAETVLLGLGRGSGARSIAGMR- 146 Q A EA AR+ARY AL + G PVL+AHT D AE VLL L RGSG ++AGMR Sbjct 95 QCRA--DDEAQARAARYEALGQIAKGKPVLVAHTASDDAEGVLLSLARGSGLDALAGMRA 152 Query 147 -PYDPP-------WC-RPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTRLRTEVLP 197 D P W RPLL R+ T CRE ++ W+DPHN R+ R+ +R +++P Sbjct 153 ATRDHPVVHAGAGWLGRPLLMCDRAATELVCREANVSWWEDPHNRSSRYLRSCVRHKLMP 212 Query 198 LLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQ-----ELSTSALT 252 + DVLG +ALAR+A R D+D + IA + L A S+ + L+ + L Sbjct 213 QVTDVLGEHAPDALARSARQFRADSDALWAIAKKELQAVASGASKNRNSKKSNLNCAKLA 272 Query 253 ALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGST 301 LP AVR R+ + W L A LT I +D LV W+GQ A+ T Sbjct 273 ELPAAVRGRIYKLW-LTDVAGPLTSAHIGAIDNLVINWKGQQPTAIPWT 320 >gi|258651090|ref|YP_003200246.1| tRNA(Ile)-lysidine synthetase [Nakamurella multipartita DSM 44233] gi|258554315|gb|ACV77257.1| tRNA(Ile)-lysidine synthetase [Nakamurella multipartita DSM 44233] Length=334 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 155/311 (50%), Positives = 169/311 (55%), Gaps = 29/311 (9%) Query 30 VGLSGGPDSLALTA---VAARLWPTTALIVDHGLQPGSATVAETARIQAISLGCVDARVL 86 V SGG DSLALT AA P VDHGLQPGSA A LGCV VL Sbjct 29 VACSGGADSLALTLGVLAAAGRRPVIGATVDHGLQPGSADRAAGCAELMRRLGCVQTHVL 88 Query 87 CVQVGAAGGREAAARSARYSALEEHRDG-----------------PVLLAHTLDDQAETV 129 V V GG EAAAR ARY AL PVLL HT DDQAETV Sbjct 89 TVTVTGDGGLEAAARRARYGALAALAQVAAAAGGAAGPAASAVRVPVLLGHTADDQAETV 148 Query 130 LLGLGRGSGARSIAGMRPYDPPWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRT 189 LLGL RGSG RSIAGMRP+ PW RPLL + R+ T AA E GL W DPHN D FTR Sbjct 149 LLGLARGSGPRSIAGMRPWRAPWGRPLLALTRAQTEAAVHEAGLIPWSDPHNADPAFTRV 208 Query 190 RLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTS 249 RLR E LPLLEDVLGGGV +AL RTA + +D +D +AA AL GA G L Sbjct 209 RLRREALPLLEDVLGGGVRDALVRTADLMADDLAALDDLAADALAGA----RSGDALLIE 264 Query 250 ALTALPDAVRRRVIRGWLLAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRLVA 309 L LP A+RRRV+R WL GA LT + +DR +TA G V V L Sbjct 265 PLVPLPAALRRRVLRAWLAGAGAGPLTYDHLSRLDRQLTARTGSAQVRVPGGLD-----V 319 Query 310 GRRDGVLVLRR 320 RRDG L + R Sbjct 320 SRRDGALTVAR 330 Lambda K H 0.321 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 570943570224 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40