BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3627c Length=461 Score E Sequences producing significant alignments: (Bits) Value gi|15610763|ref|NP_218144.1| hypothetical protein Rv3627c [Mycob... 896 0.0 gi|289441056|ref|ZP_06430800.1| conserved hypothetical protein [... 894 0.0 gi|306974098|ref|ZP_07486759.1| hypothetical protein TMJG_00875 ... 893 0.0 gi|31794797|ref|NP_857290.1| hypothetical protein Mb3651c [Mycob... 893 0.0 gi|340628592|ref|YP_004747044.1| hypothetical protein MCAN_36391... 892 0.0 gi|15843239|ref|NP_338276.1| D-alanyl-D-alanine carboxypeptidase... 892 0.0 gi|167968546|ref|ZP_02550823.1| hypothetical protein MtubH3_1112... 869 0.0 gi|307086301|ref|ZP_07495414.1| D-alanyl-D-alanine carboxypeptid... 781 0.0 gi|323717677|gb|EGB26878.1| hypothetical protein TMMG_00114 [Myc... 758 0.0 gi|41406534|ref|NP_959370.1| hypothetical protein MAP0436 [Mycob... 690 0.0 gi|240172426|ref|ZP_04751085.1| D-alanyl-D-alanine carboxypeptid... 689 0.0 gi|336460940|gb|EGO39823.1| D-alanyl-D-alanine carboxypeptidase,... 687 0.0 gi|254819882|ref|ZP_05224883.1| D-alanyl-D-alanine carboxypeptid... 685 0.0 gi|118464533|ref|YP_879809.1| D-alanyl-D-alanine carboxypeptidas... 674 0.0 gi|183985095|ref|YP_001853386.1| D-alanyl-D-alanine carboxypepti... 666 0.0 gi|15827014|ref|NP_301277.1| carboxypeptidase [Mycobacterium lep... 655 0.0 gi|296166691|ref|ZP_06849116.1| PBP4 family D-alanyl-D-alanine c... 653 0.0 gi|118619376|ref|YP_907708.1| D-alanyl-D-alanine carboxypeptidas... 652 0.0 gi|342862028|ref|ZP_08718672.1| D-alanyl-D-alanine carboxypeptid... 630 2e-178 gi|333992549|ref|YP_004525163.1| D-alanyl-D-alanine carboxypepti... 520 3e-145 gi|315446259|ref|YP_004079138.1| D-alanyl-D-alanine carboxypepti... 496 3e-138 gi|145222001|ref|YP_001132679.1| D-alanyl-D-alanine carboxypepti... 494 1e-137 gi|126437728|ref|YP_001073419.1| D-alanyl-D-alanine carboxypepti... 481 1e-133 gi|108801741|ref|YP_641938.1| D-alanyl-D-alanine carboxypeptidas... 478 1e-132 gi|120406328|ref|YP_956157.1| D-alanyl-D-alanine carboxypeptidas... 470 3e-130 gi|118473480|ref|YP_890334.1| D-alanyl-D-alanine carboxypeptidas... 461 1e-127 gi|169627623|ref|YP_001701272.1| peptidase S13 [Mycobacterium ab... 456 3e-126 gi|226304107|ref|YP_002764065.1| D-alanyl-D-alanine carboxypepti... 384 2e-104 gi|229489777|ref|ZP_04383634.1| D-alanyl-D-alanine carboxypeptid... 383 4e-104 gi|307086421|ref|ZP_07495534.1| hypothetical protein TMLG_00114 ... 372 8e-101 gi|325675183|ref|ZP_08154868.1| D-alanyl-D-alanine carboxypeptid... 370 3e-100 gi|312138046|ref|YP_004005382.1| d-alanyl-d-alanine carboxypepti... 362 1e-97 gi|111021373|ref|YP_704345.1| serine-type D-Ala-D-Ala carboxypep... 352 8e-95 gi|226363727|ref|YP_002781509.1| D-alanyl-D-alanine carboxypepti... 350 3e-94 gi|326384093|ref|ZP_08205776.1| D-alanyl-D-alaninecarboxypeptida... 342 1e-91 gi|54022350|ref|YP_116592.1| putative penicillin binding protein... 322 1e-85 gi|296138289|ref|YP_003645532.1| D-alanyl-D-alaninecarboxypeptid... 319 6e-85 gi|296392831|ref|YP_003657715.1| D-alanyl-D-alaninecarboxypeptid... 318 9e-85 gi|343924383|ref|ZP_08763933.1| D-alanyl-D-alanine carboxypeptid... 318 2e-84 gi|317507764|ref|ZP_07965468.1| D-alanyl-D-alanine carboxypeptid... 317 4e-84 gi|262203877|ref|YP_003275085.1| D-alanyl-D-alaninecarboxypeptid... 317 4e-84 gi|134097005|ref|YP_001102666.1| hypothetical protein SACE_0392 ... 303 3e-80 gi|331699848|ref|YP_004336087.1| D-alanyl-D-alanine carboxypepti... 301 2e-79 gi|333917985|ref|YP_004491566.1| putative D-alanyl-D-alanine car... 290 5e-76 gi|302530794|ref|ZP_07283136.1| D-alanyl-D-alanine carboxypeptid... 283 6e-74 gi|256374463|ref|YP_003098123.1| D-alanyl-D-alaninecarboxypeptid... 268 2e-69 gi|257057524|ref|YP_003135356.1| D-alanyl-D-alanine carboxypepti... 268 2e-69 gi|300790560|ref|YP_003770851.1| D-alanyl-D-alanine carboxypepti... 263 4e-68 gi|258651088|ref|YP_003200244.1| D-alanyl-D-alaninecarboxypeptid... 258 1e-66 gi|336324740|ref|YP_004604706.1| D-alanyl-D-alanine carboxypepti... 252 1e-64 >gi|15610763|ref|NP_218144.1| hypothetical protein Rv3627c [Mycobacterium tuberculosis H37Rv] gi|148663490|ref|YP_001285013.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis H37Ra] gi|148824831|ref|YP_001289585.1| hypothetical protein TBFG_13658 [Mycobacterium tuberculosis F11] 27 more sequence titles Length=461 Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/461 (100%), Positives = 461/461 (100%), Gaps = 0/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV Sbjct 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT Sbjct 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV Sbjct 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR Sbjct 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 Query 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA Sbjct 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 Query 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT Sbjct 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 Query 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG Sbjct 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 Query 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT Sbjct 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 >gi|289441056|ref|ZP_06430800.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289445220|ref|ZP_06434964.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis CPHL_A] gi|289571863|ref|ZP_06452090.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] 7 more sequence titles Length=461 Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/461 (99%), Positives = 460/461 (99%), Gaps = 0/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAP PPPRPPTVKAGVVPV Sbjct 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPVPPPRPPTVKAGVVPV 60 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT Sbjct 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV Sbjct 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR Sbjct 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 Query 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA Sbjct 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 Query 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT Sbjct 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 Query 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG Sbjct 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 Query 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT Sbjct 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 >gi|306974098|ref|ZP_07486759.1| hypothetical protein TMJG_00875 [Mycobacterium tuberculosis SUMu010] gi|308232516|ref|ZP_07664106.1| hypothetical protein TMAG_00116 [Mycobacterium tuberculosis SUMu001] gi|308380749|ref|ZP_07669270.1| hypothetical protein TMKG_00865 [Mycobacterium tuberculosis SUMu011] gi|308213694|gb|EFO73093.1| hypothetical protein TMAG_00116 [Mycobacterium tuberculosis SUMu001] gi|308356552|gb|EFP45403.1| hypothetical protein TMJG_00875 [Mycobacterium tuberculosis SUMu010] gi|308360510|gb|EFP49361.1| hypothetical protein TMKG_00865 [Mycobacterium tuberculosis SUMu011] Length=461 Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/461 (99%), Positives = 460/461 (99%), Gaps = 0/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV Sbjct 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT Sbjct 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV Sbjct 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR Sbjct 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 Query 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA Sbjct 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 Query 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT Sbjct 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 Query 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQG AGWLRAKTGSLTAINSLVG Sbjct 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGLAGWLRAKTGSLTAINSLVG 420 Query 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT Sbjct 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 >gi|31794797|ref|NP_857290.1| hypothetical protein Mb3651c [Mycobacterium bovis AF2122/97] gi|121639540|ref|YP_979764.1| hypothetical protein BCG_3685c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224992037|ref|YP_002646726.1| hypothetical protein JTY_3686 [Mycobacterium bovis BCG str. Tokyo 172] 8 more sequence titles Length=461 Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/461 (99%), Positives = 459/461 (99%), Gaps = 0/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAP PPPRPPTVKAGVVPV Sbjct 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPVPPPRPPTVKAGVVPV 60 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 ADTAATPSAAGVTAALAVVA DPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT Sbjct 61 ADTAATPSAAGVTAALAVVAVDPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV Sbjct 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR Sbjct 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 Query 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA Sbjct 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 Query 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT Sbjct 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 Query 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG Sbjct 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 Query 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT Sbjct 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 >gi|340628592|ref|YP_004747044.1| hypothetical protein MCAN_36391 [Mycobacterium canettii CIPT 140010059] gi|340006782|emb|CCC45970.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=461 Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/461 (99%), Positives = 459/461 (99%), Gaps = 0/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAP PPPRPPTVKAGVVPV Sbjct 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPVPPPRPPTVKAGVVPV 60 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 ADTAATPSAAGVTAAL VVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT Sbjct 61 ADTAATPSAAGVTAALEVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV Sbjct 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR Sbjct 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 Query 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA Sbjct 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 Query 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT Sbjct 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 Query 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG Sbjct 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 Query 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT Sbjct 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 >gi|15843239|ref|NP_338276.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis CDC1551] gi|13883595|gb|AAK48090.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family [Mycobacterium tuberculosis CDC1551] Length=461 Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/461 (99%), Positives = 460/461 (99%), Gaps = 0/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV Sbjct 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT Sbjct 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV Sbjct 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR Sbjct 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 Query 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA Sbjct 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 Query 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 ECIGREVAVAINRPQSFSGAVDAVTSRL+TAHIDTAGAALVDSSGLSLDNRLTARTLDAT Sbjct 301 ECIGREVAVAINRPQSFSGAVDAVTSRLSTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 Query 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG Sbjct 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 Query 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 VLTDRSGRVLTF FISNEAGPNGRNAMDALATKLWFCGCTT Sbjct 421 VLTDRSGRVLTFVFISNEAGPNGRNAMDALATKLWFCGCTT 461 >gi|167968546|ref|ZP_02550823.1| hypothetical protein MtubH3_11121 [Mycobacterium tuberculosis H37Ra] gi|254552739|ref|ZP_05143186.1| hypothetical protein Mtube_20205 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|294995463|ref|ZP_06801154.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium tuberculosis 210] 16 more sequence titles Length=450 Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/450 (99%), Positives = 450/450 (100%), Gaps = 0/450 (0%) Query 12 VVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPVADTAATPSAAG 71 +VVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPVADTAATPSAAG Sbjct 1 MVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPVADTAATPSAAG 60 Query 72 VTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAALLTLDRQ 131 VTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAALLTLDRQ Sbjct 61 VTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAALLTLDRQ 120 Query 132 ARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQIRRSGVTPT 191 ARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQIRRSGVTPT Sbjct 121 ARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQIRRSGVTPT 180 Query 192 AVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRTPALDAGR 251 AVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRTPALDAGR Sbjct 181 AVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRTPALDAGR 240 Query 252 ELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIGREVAVAI 311 ELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIGREVAVAI Sbjct 241 ELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIGREVAVAI 300 Query 312 NRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDATMQAAAGPDQPA 371 NRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDATMQAAAGPDQPA Sbjct 301 NRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDATMQAAAGPDQPA 360 Query 372 LRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVGVLTDRSGRVLT 431 LRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVGVLTDRSGRVLT Sbjct 361 LRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVGVLTDRSGRVLT 420 Query 432 FAFISNEAGPNGRNAMDALATKLWFCGCTT 461 FAFISNEAGPNGRNAMDALATKLWFCGCTT Sbjct 421 FAFISNEAGPNGRNAMDALATKLWFCGCTT 450 >gi|307086301|ref|ZP_07495414.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium tuberculosis SUMu012] gi|308364255|gb|EFP53106.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium tuberculosis SUMu012] Length=410 Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/401 (99%), Positives = 401/401 (100%), Gaps = 0/401 (0%) Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 +DTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT Sbjct 10 SDTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 69 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV Sbjct 70 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 129 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR Sbjct 130 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 189 Query 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA Sbjct 190 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 249 Query 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT Sbjct 250 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 309 Query 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG Sbjct 310 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 369 Query 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT Sbjct 370 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 410 >gi|323717677|gb|EGB26878.1| hypothetical protein TMMG_00114 [Mycobacterium tuberculosis CDC1551A] Length=390 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/390 (99%), Positives = 389/390 (99%), Gaps = 0/390 (0%) Query 72 VTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAALLTLDRQ 131 +TAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAALLTLDRQ Sbjct 1 MTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAALLTLDRQ 60 Query 132 ARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQIRRSGVTPT 191 ARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQIRRSGVTPT Sbjct 61 ARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQIRRSGVTPT 120 Query 192 AVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRTPALDAGR 251 AVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRTPALDAGR Sbjct 121 AVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRTPALDAGR 180 Query 252 ELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIGREVAVAI 311 ELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIGREVAVAI Sbjct 181 ELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIGREVAVAI 240 Query 312 NRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDATMQAAAGPDQPA 371 NRPQSFSGAVDAVTSRL+TAHIDTAGAALVDSSGLSLDNRLTARTLDATMQAAAGPDQPA Sbjct 241 NRPQSFSGAVDAVTSRLSTAHIDTAGAALVDSSGLSLDNRLTARTLDATMQAAAGPDQPA 300 Query 372 LRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVGVLTDRSGRVLT 431 LRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVGVLTDRSGRVLT Sbjct 301 LRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVGVLTDRSGRVLT 360 Query 432 FAFISNEAGPNGRNAMDALATKLWFCGCTT 461 F FISNEAGPNGRNAMDALATKLWFCGCTT Sbjct 361 FVFISNEAGPNGRNAMDALATKLWFCGCTT 390 >gi|41406534|ref|NP_959370.1| hypothetical protein MAP0436 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394883|gb|AAS02753.1| hypothetical protein MAP_0436 [Mycobacterium avium subsp. paratuberculosis K-10] Length=461 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/461 (81%), Positives = 411/461 (90%), Gaps = 1/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAG-VRAPAPPPRPPTVKAGVVP 59 M TRW+KST V +G VLAFVA VV AA TT GH AG AP P P PTVK G++P Sbjct 1 MARTRWQKSTPVFIGLGVLAFVAAVVVAATFFTTTGHGAGNAHAPIPAPHAPTVKPGMLP 60 Query 60 VADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKIL 119 V+DTA P+ GV+AALA VAADP+LG+L GRITDA+TG+ELWQ DD+PLVPASTNK+L Sbjct 61 VSDTAELPTGPGVSAALAPVAADPNLGRLGGRITDAITGKELWQVADDMPLVPASTNKVL 120 Query 120 TAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDL 179 TAAAALLTLDRQARISTRVVAG QN QGPVVLVGAGDP LSAAPPGQ TWY GAARI DL Sbjct 121 TAAAALLTLDRQARISTRVVAGSQNAQGPVVLVGAGDPVLSAAPPGQPTWYRGAARISDL 180 Query 180 VEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNS 239 VEQIRRSGVTPTAVQVD SAFSGPTMA GWDP+D+DNGDIAPIE+ MIDAGRIQPTTVNS Sbjct 181 VEQIRRSGVTPTAVQVDTSAFSGPTMAQGWDPSDVDNGDIAPIESVMIDAGRIQPTTVNS 240 Query 240 RRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVM 299 RR+RTPALDAGRELAKALGLDP AVT+A+AP+GARQLAVVQSAPL+QRLS+MM+ SDNV+ Sbjct 241 RRTRTPALDAGRELAKALGLDPNAVTVATAPSGARQLAVVQSAPLVQRLSEMMDHSDNVL 300 Query 300 AECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDA 359 AECI REVA AINRP+SF+GA DAVT+RL+TAH+DTAGA L+DSSGLS+D+RLTA+TLD Sbjct 301 AECIAREVAAAINRPRSFAGAADAVTNRLSTAHVDTAGATLMDSSGLSVDDRLTAKTLDG 360 Query 360 TMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLV 419 +QAAAGPDQPALR LLDLLPIA GSGTLG+RF DA+T+QGPAGWLRAKTGSLTAIN+L Sbjct 361 VLQAAAGPDQPALRALLDLLPIAAGSGTLGDRFTDASTNQGPAGWLRAKTGSLTAINALA 420 Query 420 GVLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCT 460 GVLTDRSGRVLTFAFISN+AGPNGRNAMDALAT+LWFCGC+ Sbjct 421 GVLTDRSGRVLTFAFISNDAGPNGRNAMDALATRLWFCGCS 461 >gi|240172426|ref|ZP_04751085.1| D-alanyl-D-alanine carboxypeptidase DacB1 [Mycobacterium kansasii ATCC 12478] Length=461 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/461 (87%), Positives = 423/461 (92%), Gaps = 0/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 MGP RWRK+THV VG AVLAFVA VVAAAA TTG H AG R P PPPRPPTVK GV PV Sbjct 1 MGPKRWRKTTHVFVGVAVLAFVAAVVAAAAFFTTGSHGAGARPPVPPPRPPTVKPGVTPV 60 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 DTA PSAAGV AALA AADP+LG+L GR+TDALTGQELW++LDD+PL+PASTNK+LT Sbjct 61 VDTAPAPSAAGVAAALAQAAADPNLGRLGGRVTDALTGQELWRQLDDMPLIPASTNKVLT 120 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 A AALLTLDRQAR+STRVVAG ++ GPVVLVGAGDPTLSAAPPG DTWY GAARI DLV Sbjct 121 ATAALLTLDRQARVSTRVVAGTRDSLGPVVLVGAGDPTLSAAPPGVDTWYRGAARISDLV 180 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 EQIRRSG+TPTAVQVD SAF+GPTMAPGWDPAD+DNGDIAPIEAAMIDAGRIQPTTVNSR Sbjct 181 EQIRRSGMTPTAVQVDISAFTGPTMAPGWDPADVDNGDIAPIEAAMIDAGRIQPTTVNSR 240 Query 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 RSRTPALDAGRELA+ALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA Sbjct 241 RSRTPALDAGRELAEALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 Query 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 ECI REVA AINRPQSF+GAVDAV +RLN+AHIDT GAAL DSSGLS+++RLTARTLD Sbjct 301 ECIAREVAAAINRPQSFTGAVDAVITRLNSAHIDTTGAALADSSGLSVNDRLTARTLDGA 360 Query 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLD AT+ GPAGWLRAKTGSLTAINSLVG Sbjct 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDRATNLGPAGWLRAKTGSLTAINSLVG 420 Query 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 VLTD SGRVLTFAF+SN+AGPNGRNAMDALATKLWFCGCTT Sbjct 421 VLTDSSGRVLTFAFLSNDAGPNGRNAMDALATKLWFCGCTT 461 >gi|336460940|gb|EGO39823.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family [Mycobacterium avium subsp. paratuberculosis S397] Length=461 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/461 (81%), Positives = 410/461 (89%), Gaps = 1/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAG-VRAPAPPPRPPTVKAGVVP 59 M TRW+KST V +G VLAFVA VV AA TT GH AG AP P P PTVK G++ Sbjct 1 MARTRWQKSTPVFIGLGVLAFVAAVVVAATFFTTTGHGAGNAHAPIPAPHAPTVKPGMLS 60 Query 60 VADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKIL 119 V+DTA P+ GV+AALA VAADP+LG+L GRITDA+TG+ELWQ DD+PLVPASTNK+L Sbjct 61 VSDTAELPTGPGVSAALAPVAADPNLGRLGGRITDAITGKELWQVADDMPLVPASTNKVL 120 Query 120 TAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDL 179 TAAAALLTLDRQARISTRVVAG QN QGPVVLVGAGDP LSAAPPGQ TWY GAARI DL Sbjct 121 TAAAALLTLDRQARISTRVVAGSQNAQGPVVLVGAGDPVLSAAPPGQPTWYRGAARISDL 180 Query 180 VEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNS 239 VEQIRRSGVTPTAVQVD SAFSGPTMA GWDP+D+DNGDIAPIE+ MIDAGRIQPTTVNS Sbjct 181 VEQIRRSGVTPTAVQVDTSAFSGPTMAQGWDPSDVDNGDIAPIESVMIDAGRIQPTTVNS 240 Query 240 RRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVM 299 RR+RTPALDAGRELAKALGLDP AVT+A+AP+GARQLAVVQSAPL+QRLS+MM+ SDNV+ Sbjct 241 RRTRTPALDAGRELAKALGLDPNAVTVATAPSGARQLAVVQSAPLVQRLSEMMDHSDNVL 300 Query 300 AECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDA 359 AECI REVA AINRP+SF+GA DAVT+RL+TAH+DTAGA L+DSSGLS+D+RLTA+TLD Sbjct 301 AECIAREVAAAINRPRSFAGAADAVTNRLSTAHVDTAGATLMDSSGLSVDDRLTAKTLDG 360 Query 360 TMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLV 419 +QAAAGPDQPALR LLDLLPIA GSGTLG+RF DA+T+QGPAGWLRAKTGSLTAIN+L Sbjct 361 VLQAAAGPDQPALRALLDLLPIAAGSGTLGDRFTDASTNQGPAGWLRAKTGSLTAINALA 420 Query 420 GVLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCT 460 GVLTDRSGRVLTFAFISN+AGPNGRNAMDALAT+LWFCGC+ Sbjct 421 GVLTDRSGRVLTFAFISNDAGPNGRNAMDALATRLWFCGCS 461 >gi|254819882|ref|ZP_05224883.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium intracellulare ATCC 13950] Length=450 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/450 (82%), Positives = 404/450 (90%), Gaps = 1/450 (0%) Query 12 VVVGAAVLAFVAVVVAAAALVTTGGHRAG-VRAPAPPPRPPTVKAGVVPVADTAATPSAA 70 +++G VLAFVA VV AA TT GH AG RAP PPP PTVK G+VPV+DTA PS Sbjct 1 MLIGLGVLAFVAAVVVAATFFTTTGHGAGSARAPIPPPHAPTVKPGMVPVSDTAELPSGP 60 Query 71 GVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAALLTLDR 130 GV AALA VA DP+LG+L GRITDALTG+ELWQ DD+PLVPASTNK+LTAAAALLTLDR Sbjct 61 GVGAALAPVAGDPNLGRLGGRITDALTGKELWQVADDMPLVPASTNKVLTAAAALLTLDR 120 Query 131 QARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQIRRSGVTP 190 QARISTRVVAG QN QGPVVLVGAGDP LSAAPPGQDTWY GAARI DLVEQIRRSGVTP Sbjct 121 QARISTRVVAGSQNAQGPVVLVGAGDPVLSAAPPGQDTWYRGAARISDLVEQIRRSGVTP 180 Query 191 TAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRTPALDAG 250 TAVQVD SAFSGPTMA GWDPAD+DNGDIAPIE+ MIDAGRIQPTTVNSRRSRTPALDAG Sbjct 181 TAVQVDTSAFSGPTMAQGWDPADVDNGDIAPIESVMIDAGRIQPTTVNSRRSRTPALDAG 240 Query 251 RELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIGREVAVA 310 RELAKAL LDPAAVTIA+AP+GARQLAVVQSAPL+QRLS+MM+ SDNV+AECI REVA A Sbjct 241 RELAKALNLDPAAVTIATAPSGARQLAVVQSAPLVQRLSEMMDHSDNVLAECIAREVAAA 300 Query 311 INRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDATMQAAAGPDQP 370 INRP+SF+GA DAVT+RL+TAH+DTAGAAL+DSSGLS+D+RLTA+TLD +QAAAGPDQP Sbjct 301 INRPRSFAGAADAVTNRLSTAHVDTAGAALLDSSGLSVDDRLTAKTLDGVLQAAAGPDQP 360 Query 371 ALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVGVLTDRSGRVL 430 +LR LLDLLPIA GSGTLG+RFLDA+T QGPAGWLRAKTGSLT IN+L GVLTDRSGRVL Sbjct 361 SLRALLDLLPIAAGSGTLGDRFLDASTSQGPAGWLRAKTGSLTNINALAGVLTDRSGRVL 420 Query 431 TFAFISNEAGPNGRNAMDALATKLWFCGCT 460 TFAFISN+AGPNGRN MDALAT+LWFCGC+ Sbjct 421 TFAFISNDAGPNGRNVMDALATRLWFCGCS 450 >gi|118464533|ref|YP_879809.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium avium 104] gi|254773499|ref|ZP_05215015.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium avium subsp. avium ATCC 25291] gi|118165820|gb|ABK66717.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium avium 104] Length=450 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/450 (81%), Positives = 403/450 (90%), Gaps = 1/450 (0%) Query 12 VVVGAAVLAFVAVVVAAAALVTTGGHRAG-VRAPAPPPRPPTVKAGVVPVADTAATPSAA 70 + +G VLAFVA VV AA TT GH AG AP P P PTVK G++PV+DTA P+ Sbjct 1 MFIGLGVLAFVAAVVVAATFFTTTGHGAGNAHAPIPAPHAPTVKPGMLPVSDTAELPTGP 60 Query 71 GVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAALLTLDR 130 GV+AALA VAADP+LG+L GRITDA+TG+ELWQ DD+PLVPASTNK+LTAAAALLTLDR Sbjct 61 GVSAALAPVAADPNLGRLGGRITDAITGKELWQVADDMPLVPASTNKVLTAAAALLTLDR 120 Query 131 QARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQIRRSGVTP 190 QARISTRVVAG QN QGPVVLVGAGDP LSAAPPGQ TWY GAARI DLVEQIRRSGVTP Sbjct 121 QARISTRVVAGSQNAQGPVVLVGAGDPVLSAAPPGQPTWYRGAARISDLVEQIRRSGVTP 180 Query 191 TAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRTPALDAG 250 TAVQVD SAFSGPTMA GWDP+D+DNGDIAPIE+ MIDAGRIQPTTVNSRR+RTPALDAG Sbjct 181 TAVQVDTSAFSGPTMAQGWDPSDVDNGDIAPIESVMIDAGRIQPTTVNSRRTRTPALDAG 240 Query 251 RELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIGREVAVA 310 RELAKALGLDP AVT+A+AP+GARQLAVVQSAPL+QRLS+MM+ SDNV+AECI REVA A Sbjct 241 RELAKALGLDPNAVTVATAPSGARQLAVVQSAPLVQRLSEMMDHSDNVLAECIAREVAAA 300 Query 311 INRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDATMQAAAGPDQP 370 INRP+SF+GA DAVT+RL+TAH+DTAGA L+DSSGLS+D+RLTA+TLD +QAAAGPDQP Sbjct 301 INRPRSFAGAADAVTNRLSTAHVDTAGATLMDSSGLSVDDRLTAKTLDGVLQAAAGPDQP 360 Query 371 ALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVGVLTDRSGRVL 430 ALR LLDLLPIA GSGTLG+RF DA+T+QGPAGWLRAKTGSLTAIN+L GVLTDRSGRVL Sbjct 361 ALRALLDLLPIAAGSGTLGDRFTDASTNQGPAGWLRAKTGSLTAINALAGVLTDRSGRVL 420 Query 431 TFAFISNEAGPNGRNAMDALATKLWFCGCT 460 TFAFISN+AGPNGRNAMDALAT+LWFCGC+ Sbjct 421 TFAFISNDAGPNGRNAMDALATRLWFCGCS 450 >gi|183985095|ref|YP_001853386.1| D-alanyl-D-alanine carboxypeptidase DacB1 [Mycobacterium marinum M] gi|183178421|gb|ACC43531.1| D-alanyl-D-alanine carboxypeptidase DacB1 [Mycobacterium marinum M] Length=461 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/461 (83%), Positives = 410/461 (89%), Gaps = 0/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 MGP RWRKST V +G AVLAFVA VVAAAA T GG A R PPPRPPTVK V V Sbjct 1 MGPKRWRKSTQVFLGVAVLAFVAAVVAAAAFFTVGGRAASARLVVPPPRPPTVKPAVTAV 60 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 ADT P++ + AALA AADP+LGKL GR++DALTGQ LWQ+LDDVPLVPASTNK+LT Sbjct 61 ADTGVVPNSGAMAAALAQAAADPNLGKLGGRVSDALTGQVLWQQLDDVPLVPASTNKVLT 120 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 A AALLTLDRQARISTRVVAG + QGPVVLVGAGDPTLSAAPPG +TWY GAARI DLV Sbjct 121 ATAALLTLDRQARISTRVVAGSPSGQGPVVLVGAGDPTLSAAPPGVETWYRGAARISDLV 180 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 +QIRRSG+TPT+VQVD SAF+GPTMAPGWDPAD+ NGDIAPIEAAMIDAGR+QPTTVNSR Sbjct 181 DQIRRSGMTPTSVQVDISAFTGPTMAPGWDPADVGNGDIAPIEAAMIDAGRVQPTTVNSR 240 Query 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 RS TPALDAGRELA+ALGLDPA V+IASAPAGARQLAVVQSAPLI+RLSQMMNASDNVMA Sbjct 241 RSLTPALDAGRELARALGLDPATVSIASAPAGARQLAVVQSAPLIERLSQMMNASDNVMA 300 Query 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 ECI REVA AINRP+SFSGAVDAVT+RLNTAHI+T GA LVDSSGLS+D+RLTARTLD Sbjct 301 ECIAREVAAAINRPRSFSGAVDAVTTRLNTAHINTTGAGLVDSSGLSVDDRLTARTLDDA 360 Query 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 +QAAAGPDQPALRPLLDLLPIAGGSGTLGERFLD AT+ GPAGWLRAKTGSLTAINSLVG Sbjct 361 IQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDRATNLGPAGWLRAKTGSLTAINSLVG 420 Query 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 V+TD SGRVLTFAFISN+AGPNGRNAMDALAT LW CGCTT Sbjct 421 VVTDSSGRVLTFAFISNDAGPNGRNAMDALATTLWSCGCTT 461 >gi|15827014|ref|NP_301277.1| carboxypeptidase [Mycobacterium leprae TN] gi|221229492|ref|YP_002502908.1| putative carboxypeptidase [Mycobacterium leprae Br4923] gi|3097232|emb|CAA18807.1| hypothetical protein MLCB2548.20c [Mycobacterium leprae] gi|13092561|emb|CAC29719.1| putative carboxypeptidase [Mycobacterium leprae] gi|219932599|emb|CAR70304.1| putative carboxypeptidase [Mycobacterium leprae Br4923] Length=461 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/462 (77%), Positives = 387/462 (84%), Gaps = 2/462 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRA-GVRAPAPPPRPPTVKAGVVP 59 M P RW+KS +VVVG A+LAF+ V AA + TTGGH G R+ PPPR TVK +VP Sbjct 1 MNPIRWQKS-YVVVGLAMLAFIIAAVKAATVFTTGGHSTNGARSAVPPPRASTVKPALVP 59 Query 60 VADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKIL 119 V +TA PS G+ AALA ADP LG GRITDA+T +ELWQ+ DD+PLVPAS NK+L Sbjct 60 VTETAVVPSVGGLAAALASALADPSLGSFGGRITDAMTAKELWQQQDDMPLVPASANKLL 119 Query 120 TAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDL 179 TAAAALLTLDRQ RISTRVVA G N QGPVVLVGAGDPTLSAA P Q TWY GA RI DL Sbjct 120 TAAAALLTLDRQTRISTRVVAAGPNAQGPVVLVGAGDPTLSAASPDQSTWYRGAPRISDL 179 Query 180 VEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNS 239 VEQ+RRSGVTPTAVQVD S F+GPTMA GWDPAD+DNG APIE+AMIDAGRIQPTTV S Sbjct 180 VEQVRRSGVTPTAVQVDTSLFTGPTMAQGWDPADVDNGYTAPIESAMIDAGRIQPTTVKS 239 Query 240 RRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVM 299 RRSRTPALDAGRELAKALG+ P AVTI A +GARQLAVVQSAPL+QRLS+MM+ SDNV+ Sbjct 240 RRSRTPALDAGRELAKALGVAPDAVTIVKASSGARQLAVVQSAPLVQRLSEMMDNSDNVL 299 Query 300 AECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDA 359 AECIGREVA AINRP SF+GAVDAVT+RL TAHIDT GAALVDSSGLS++NRLTA+TL Sbjct 300 AECIGREVAAAINRPLSFAGAVDAVTNRLGTAHIDTTGAALVDSSGLSVNNRLTAKTLGG 359 Query 360 TMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLV 419 +QAAAGPDQP LR LLDLLPIAGGSGTL +RFL +AT QGPAGWLRAKTGSLTAINSLV Sbjct 360 AVQAAAGPDQPVLRALLDLLPIAGGSGTLSDRFLSSATHQGPAGWLRAKTGSLTAINSLV 419 Query 420 GVLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 GV+TDRSGRVLTFAFISN+AGP GR AMD LAT+LW CGC T Sbjct 420 GVVTDRSGRVLTFAFISNDAGPTGRAAMDELATRLWMCGCAT 461 >gi|296166691|ref|ZP_06849116.1| PBP4 family D-alanyl-D-alanine carboxypeptidase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897956|gb|EFG77537.1| PBP4 family D-alanyl-D-alanine carboxypeptidase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=450 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/409 (82%), Positives = 370/409 (91%), Gaps = 0/409 (0%) Query 52 TVKAGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLV 111 TVK G+VPV+DTA TP+ AGV A LA VAADP+LG+L R+TDA+TG+ELWQ D+PLV Sbjct 42 TVKPGMVPVSDTAETPTPAGVAAVLAAVAADPNLGRLGARVTDAMTGKELWQVAADLPLV 101 Query 112 PASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYH 171 PASTNK+LT+AAALLTLD QARISTRVVAG QN QGPVVLVGAGDP LSAAPPG DTWY Sbjct 102 PASTNKVLTSAAALLTLDHQARISTRVVAGSQNAQGPVVLVGAGDPVLSAAPPGVDTWYR 161 Query 172 GAARIGDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGR 231 G+ARI DLVEQIRRSGVTPTAVQVD SAFSGPTMA GWDPAD+DNGDIAPIE+ MIDAGR Sbjct 162 GSARIADLVEQIRRSGVTPTAVQVDTSAFSGPTMAQGWDPADVDNGDIAPIESVMIDAGR 221 Query 232 IQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQM 291 IQP+TVNSRRSRTPALDAGRELAKALGLDP AVTIA+AP+GARQLAVVQSAPL+QRLS+M Sbjct 222 IQPSTVNSRRSRTPALDAGRELAKALGLDPGAVTIATAPSGARQLAVVQSAPLVQRLSEM 281 Query 292 MNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNR 351 M SDNVMAECI REVA AINRP+SF+GA DAVT+RL+TAH++T G AL+DSSGLS+D+R Sbjct 282 MEHSDNVMAECIAREVAAAINRPRSFAGAADAVTNRLSTAHVETGGVALLDSSGLSVDDR 341 Query 352 LTARTLDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGS 411 LTARTLD +QAAAGPDQP LR LLDLLPIA GSGTLG+RF DAA++QGPAGWLRAKTGS Sbjct 342 LTARTLDGVLQAAAGPDQPPLRALLDLLPIAAGSGTLGDRFTDAASNQGPAGWLRAKTGS 401 Query 412 LTAINSLVGVLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCT 460 LTA+N+L GVLTDRSGRVLTFAFISN AGPNGRN MDALATKLW CGC+ Sbjct 402 LTAVNALAGVLTDRSGRVLTFAFISNAAGPNGRNVMDALATKLWSCGCS 450 >gi|118619376|ref|YP_907708.1| D-alanyl-D-alanine carboxypeptidase DacB1 [Mycobacterium ulcerans Agy99] gi|118571486|gb|ABL06237.1| D-alanyl-D-alanine carboxypeptidase DacB1 [Mycobacterium ulcerans Agy99] Length=461 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/461 (82%), Positives = 406/461 (89%), Gaps = 0/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 MGP RWRKST V +G AVLAFVA VVAAAA T GG A R PPPRPPTVK V V Sbjct 1 MGPKRWRKSTQVFLGVAVLAFVAAVVAAAAFFTVGGRAASARLVVPPPRPPTVKPAVTAV 60 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 ADT P++ + AALA AADP+LGKL GR++DALTGQ LWQ+LDDVPLVPAST+K+LT Sbjct 61 ADTGVVPNSGAMAAALAQAAADPNLGKLGGRVSDALTGQVLWQQLDDVPLVPASTSKVLT 120 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 A AALLTLDRQARISTRVVAG + QG VVLVGAGDPTLSAAPPG +TWY GAARI DLV Sbjct 121 ATAALLTLDRQARISTRVVAGSPSGQGSVVLVGAGDPTLSAAPPGVETWYRGAARISDLV 180 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 +QIRRSG+TPT+VQVD SAF+GPTMAPGWDP+D+ NGDIAPIEAAMIDAGR+QPTTVNSR Sbjct 181 DQIRRSGMTPTSVQVDISAFTGPTMAPGWDPSDVGNGDIAPIEAAMIDAGRVQPTTVNSR 240 Query 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 RS TPALDAG ELA+ALGLDPA V+IASAPAGARQLAVVQSAPLI+RLSQMMNASDNVMA Sbjct 241 RSLTPALDAGCELARALGLDPATVSIASAPAGARQLAVVQSAPLIERLSQMMNASDNVMA 300 Query 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 ECI REVA AINRP+SFSGAVDAVT+RLNTA I+T GA LVDSSGLS+D+RLTARTLD Sbjct 301 ECIAREVAAAINRPRSFSGAVDAVTTRLNTALINTTGAGLVDSSGLSVDDRLTARTLDDA 360 Query 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 +QAAAGPDQPALRPLLDLLPIA GSGTLGERFLD AT+ GPAGWLRAKTGSLTAINSLVG Sbjct 361 IQAAAGPDQPALRPLLDLLPIASGSGTLGERFLDRATNLGPAGWLRAKTGSLTAINSLVG 420 Query 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCTT 461 V+TD SGRVLTFAFISN+AGPNGRNAMDALAT LW CGCTT Sbjct 421 VVTDSSGRVLTFAFISNDAGPNGRNAMDALATTLWSCGCTT 461 >gi|342862028|ref|ZP_08718672.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium colombiense CECT 3035] gi|342130568|gb|EGT83877.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium colombiense CECT 3035] Length=450 Score = 630 bits (1625), Expect = 2e-178, Method: Compositional matrix adjust. Identities = 328/409 (81%), Positives = 364/409 (89%), Gaps = 0/409 (0%) Query 52 TVKAGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLV 111 TVK G+VPV+DTA PS GV A LA VA DP+LG+L GR+TDA+TG+ELWQ DD+PLV Sbjct 42 TVKPGMVPVSDTAELPSGPGVAAMLAPVAGDPNLGRLGGRVTDAITGKELWQVGDDMPLV 101 Query 112 PASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYH 171 PASTNK+LTAAAALLTLDRQARISTRVVAG QN QGPVVLVGAGDP LSAAPP TWY Sbjct 102 PASTNKVLTAAAALLTLDRQARISTRVVAGSQNAQGPVVLVGAGDPVLSAAPPDVPTWYR 161 Query 172 GAARIGDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGR 231 G+AR+ DLVEQIRRSGVTPT+VQVD SAFSGPTMA GWD AD+DNGDIAPIE+ MIDAGR Sbjct 162 GSARLSDLVEQIRRSGVTPTSVQVDTSAFSGPTMAQGWDLADVDNGDIAPIESVMIDAGR 221 Query 232 IQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQM 291 IQP+TVNSRRSRTPALDAGRELAKALGLDP AVT A+AP+GARQLAVVQSAPL+QRLS+M Sbjct 222 IQPSTVNSRRSRTPALDAGRELAKALGLDPNAVTTATAPSGARQLAVVQSAPLVQRLSEM 281 Query 292 MNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNR 351 M+ SDNV+AE I REVA AINRP+SF+GA DAVT+RL TAH+DTAG AL+DSSGLS+D+R Sbjct 282 MDHSDNVLAESIAREVAAAINRPRSFAGAADAVTNRLTTAHVDTAGVALLDSSGLSVDDR 341 Query 352 LTARTLDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGS 411 LTA+TLD +QAAAGPDQP+LR LLDLLPIA GSGTL +RF DA+T QGPAGWLRAKTGS Sbjct 342 LTAKTLDGVLQAAAGPDQPSLRALLDLLPIAAGSGTLADRFTDASTAQGPAGWLRAKTGS 401 Query 412 LTAINSLVGVLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGCT 460 LT IN+L GVLTDRSGRVLTFAFISN AGPNGRN MDALAT+LW CGC+ Sbjct 402 LTGINALAGVLTDRSGRVLTFAFISNNAGPNGRNVMDALATRLWSCGCS 450 >gi|333992549|ref|YP_004525163.1| D-alanyl-D-alanine carboxypeptidase DacB1 [Mycobacterium sp. JDM601] gi|333488517|gb|AEF37909.1| D-alanyl-D-alanine carboxypeptidase DacB1 [Mycobacterium sp. JDM601] Length=458 Score = 520 bits (1338), Expect = 3e-145, Method: Compositional matrix adjust. Identities = 304/460 (67%), Positives = 353/460 (77%), Gaps = 4/460 (0%) Query 1 MGPTRWRKS-THVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVP 59 M TRWR S TH+ + AVLA A VV AA+V AG AP P T + GVVP Sbjct 1 MDSTRWRHSSTHLGIAGAVLALAAAVVVVAAVVLPDESGAGAHVVAPAP-TATAEPGVVP 59 Query 60 VADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKIL 119 V D A P+ + +TAA++ ADP+LG+L GRITDALTG+ LW + +D+P+ PASTNK+L Sbjct 60 VVDDAPVPTGSALTAAMSAALADPNLGRLTGRITDALTGKALWTQQEDLPMQPASTNKVL 119 Query 120 TAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDL 179 TAAAALL LD R++TRV AG Q G VVLVGAGDPTLS A GQDTWY AARI DL Sbjct 120 TAAAALLALDLSTRVTTRVTAGDQ--PGVVVLVGAGDPTLSTAEVGQDTWYRDAARISDL 177 Query 180 VEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNS 239 +Q+RRSGVTPT V+VD SAFSGP+MAPGWDP DI+ GDIAPIEA M+D GRIQPTTV S Sbjct 178 ADQVRRSGVTPTEVRVDVSAFSGPSMAPGWDPDDIEGGDIAPIEAVMVDGGRIQPTTVES 237 Query 240 RRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVM 299 RRSRTPALDAG LA LGLD V+IA+A R+L V SAPL+ RL +MMNASDNVM Sbjct 238 RRSRTPALDAGEALAAELGLDADKVSIATASVTGRELGAVSSAPLVVRLGEMMNASDNVM 297 Query 300 AECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDA 359 AECIGREVA A+ RP+SF+GAVDAVT+RL TAHI +GA+L DSSGLS+DNRL+AR LDA Sbjct 298 AECIGREVAAAMGRPRSFAGAVDAVTNRLATAHIAVSGASLYDSSGLSVDNRLSARNLDA 357 Query 360 TMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLV 419 +QAAAGPDQP LRPLLD+LP+AGGSGTL +RFLD T +G AGWLRAKTGSLT N+L Sbjct 358 VVQAAAGPDQPELRPLLDMLPVAGGSGTLSDRFLDPRTGRGAAGWLRAKTGSLTRTNALA 417 Query 420 GVLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGC 459 G++TDR RVLTFAFISN+AGP GR ++DALA L CGC Sbjct 418 GIVTDRDRRVLTFAFISNDAGPTGRTSIDALAAVLRTCGC 457 >gi|315446259|ref|YP_004079138.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family [Mycobacterium sp. Spyr1] gi|315264562|gb|ADU01304.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family [Mycobacterium sp. Spyr1] Length=459 Score = 496 bits (1277), Expect = 3e-138, Method: Compositional matrix adjust. Identities = 287/463 (62%), Positives = 342/463 (74%), Gaps = 9/463 (1%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 M PT WR+ST+VVVGA V V V+VAAAALV V A P P P T GV+ V Sbjct 1 MRPTGWRRSTYVVVGAVVALLVVVLVAAAALVAGRESDENV-AVDPVPAPATADPGVIAV 59 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 +D+A P+ G+ AL VAADP+LG+ GRITDALTG++LW + DVP+ PASTNK+LT Sbjct 60 SDSADVPTERGLADALRGVAADPNLGRFTGRITDALTGKQLWAQGADVPMQPASTNKLLT 119 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 AAAAL+TLDR AR++TRVV+ G +VLV GD TLSAAP +DTWY AARI DL Sbjct 120 AAAALVTLDRDARLTTRVVS---TSPGVIVLVAGGDQTLSAAPAKEDTWYRDAARISDLA 176 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 +Q+RRSGV +VQVD S ++GPTMAPGWDP DID GDIAP+EA M+D GR QP +V SR Sbjct 177 DQVRRSGVDVRSVQVDVSFYTGPTMAPGWDPLDIDGGDIAPMEAIMLDGGRTQPVSVESR 236 Query 241 RSRTPALDAGRELAKALGLDPAAVTI----ASAPAGARQLAVVQSAPLIQRLSQMMNASD 296 RSRTPALDAGR LA AL LDPA VT+ SAP G ++A VQSAPL++RL QMM+ASD Sbjct 237 RSRTPALDAGRALATALRLDPAKVTVLPPGRSAPDG-DEIASVQSAPLMERLRQMMHASD 295 Query 297 NVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTART 356 NVMAE IGREVA A NRP+SF+GA AV L+ A IDT+GA L+DSSGLS+DNRLTA T Sbjct 296 NVMAESIGREVADARNRPRSFAGAAQAVEDALDDAGIDTSGARLLDSSGLSVDNRLTAET 355 Query 357 LDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAIN 416 LD +QAAAG PALRPL+DLL IAGGSGT+ R+ D + + G+LRAKTGSLT N Sbjct 356 LDEIIQAAAGESTPALRPLVDLLAIAGGSGTMSNRYHDTESGRAALGYLRAKTGSLTGTN 415 Query 417 SLVGVLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGC 459 +L G++TD SGRVLTFA +SN+AGP GR ++DA A L CGC Sbjct 416 TLAGIVTDESGRVLTFALLSNDAGPTGRTSLDAFAATLRSCGC 458 >gi|145222001|ref|YP_001132679.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium gilvum PYR-GCK] gi|145214487|gb|ABP43891.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium gilvum PYR-GCK] Length=459 Score = 494 bits (1272), Expect = 1e-137, Method: Compositional matrix adjust. Identities = 287/463 (62%), Positives = 341/463 (74%), Gaps = 9/463 (1%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 M PT WR+ST+VVVGA V V V+VAAAALV V A P P P T GV+ V Sbjct 1 MRPTGWRRSTYVVVGAVVALLVVVLVAAAALVAGRESDENV-AVDPVPAPATADPGVIAV 59 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 +D+A P+ G+ AL VAADP+LG+ GRITDALTG++LW + DVP+ PASTNK+LT Sbjct 60 SDSADVPTERGLADALRGVAADPNLGRFTGRITDALTGKQLWAQGADVPMQPASTNKLLT 119 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 AAAAL+TLDR AR++TRVV+ G +VLV GD TLSAAP +DTWY AARI DL Sbjct 120 AAAALVTLDRDARLTTRVVS---TSPGVIVLVAGGDQTLSAAPAKEDTWYRDAARISDLA 176 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 +Q+RRSGV +VQVD S ++GPTMAPGWDP DID GDIAP+EA M+D GR QP +V SR Sbjct 177 DQVRRSGVDVRSVQVDVSFYTGPTMAPGWDPLDIDGGDIAPMEAIMLDGGRTQPVSVESR 236 Query 241 RSRTPALDAGRELAKALGLDPAAVTI----ASAPAGARQLAVVQSAPLIQRLSQMMNASD 296 RSRTPALDAGR LA AL LDPA VT+ SAP G ++A VQSAPL++RL QMM+ASD Sbjct 237 RSRTPALDAGRALATALRLDPAKVTVLPPGRSAPDG-DEIASVQSAPLMERLRQMMHASD 295 Query 297 NVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTART 356 NVMAE IGREVA A NRP+SF+GA AV L+ A IDT+GA L+DSSGLS+DNRLTA T Sbjct 296 NVMAESIGREVADARNRPRSFAGAAQAVEDALDDAGIDTSGARLLDSSGLSVDNRLTAET 355 Query 357 LDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAIN 416 LD +QAAAG PALRPL+DLL IAGGSGT+ R+ D + G+LRAKTGSLT N Sbjct 356 LDEIIQAAAGESTPALRPLVDLLAIAGGSGTMSNRYHDTEPGRAALGYLRAKTGSLTGTN 415 Query 417 SLVGVLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGC 459 +L G++TD SGRVLTFA +SN+AGP GR ++DA A L CGC Sbjct 416 TLAGIVTDESGRVLTFALLSNDAGPTGRTSLDAFAATLRSCGC 458 >gi|126437728|ref|YP_001073419.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium sp. JLS] gi|126237528|gb|ABO00929.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium sp. JLS] Length=462 Score = 481 bits (1239), Expect = 1e-133, Method: Compositional matrix adjust. Identities = 293/461 (64%), Positives = 340/461 (74%), Gaps = 3/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 M PTRWR+STHV+VG AVL VAV+VA AA+ TTG + +A P P P T VVPV Sbjct 1 MRPTRWRRSTHVLVGLAVLVLVAVLVAVAAVFTTG-RNSDAQAAKPLPAPATANPAVVPV 59 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 ++A P+ AG+ AALA ADP+LG+LAGR+TDA+TG LW R DVP+ PASTNK+LT Sbjct 60 TESAPMPTDAGLAAALAPALADPNLGELAGRVTDAMTGDPLWDRHADVPMQPASTNKVLT 119 Query 121 AAAALLTLDRQARISTRVVAGGQNPQ-GPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDL 179 AAAALLTLDR+AR++T VVAG Q G VVL G GDPTLSAAP G D+WY AARIG+L Sbjct 120 AAAALLTLDREARLTTTVVAGDQKRDPGLVVLKGGGDPTLSAAPRGTDSWYRDAARIGEL 179 Query 180 VEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNS 239 +Q+RRSG+ PTAV VD SA++GP MA GWDP DI GDIAP+ M+D GR QP + S Sbjct 180 ADQVRRSGIEPTAVAVDTSAYTGPEMAFGWDPLDIPGGDIAPMVPVMLDGGRTQPVSEES 239 Query 240 RRSRTPALDAGRELAKALGLDPAAVTIASAPA-GARQLAVVQSAPLIQRLSQMMNASDNV 298 RRS TPA DAGR LA AL +DPAAVT+ P G RQ+A VQS PL++RL MMN SDNV Sbjct 240 RRSPTPAADAGRALATALRIDPAAVTVLRGPYRGGRQIAAVQSPPLMERLRVMMNLSDNV 299 Query 299 MAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLD 358 MAE IGREVA + RPQSF A AV ++L A IDT GA L DSSGLS+D+RLTARTLD Sbjct 300 MAEAIGREVAAQLGRPQSFDDAAKAVLAQLRKAGIDTTGARLFDSSGLSVDDRLTARTLD 359 Query 359 ATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSL 418 + AAAG D P LRPL+DLLPIAGGSGTL R+LD A + AGWLRAKTGSLT NSL Sbjct 360 DVITAAAGDDHPELRPLVDLLPIAGGSGTLSNRYLDTAAGREAAGWLRAKTGSLTGTNSL 419 Query 419 VGVLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGC 459 G++TD GRVLTFA +SN AGP GR A+DALA L CGC Sbjct 420 AGIVTDARGRVLTFALMSNNAGPTGRTALDALAATLRACGC 460 >gi|108801741|ref|YP_641938.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium sp. MCS] gi|119870892|ref|YP_940844.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium sp. KMS] gi|108772160|gb|ABG10882.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium sp. MCS] gi|119696981|gb|ABL94054.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium sp. KMS] Length=462 Score = 478 bits (1229), Expect = 1e-132, Method: Compositional matrix adjust. Identities = 292/461 (64%), Positives = 339/461 (74%), Gaps = 3/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 M PTRWR+STHV+VG VL VAVVVA AA+ TTG + +A P P P T VVPV Sbjct 1 MRPTRWRRSTHVLVGLVVLVLVAVVVAVAAVFTTG-RNSDAQAAKPLPTPATANPAVVPV 59 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 A++A TP+ AG+ AALA ADP+LG+LAGR+TDA+TG LW + DVP+ PASTNK+LT Sbjct 60 AESAPTPTDAGLAAALAPALADPNLGELAGRVTDAMTGDPLWDQRADVPMQPASTNKVLT 119 Query 121 AAAALLTLDRQARISTRVVAGGQNPQ-GPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDL 179 AAAALLTLDR+AR++T VVAG Q G VVL G GDPTLSAAP G D+WY AARIG+L Sbjct 120 AAAALLTLDREARLTTTVVAGDQKRDPGLVVLKGGGDPTLSAAPRGTDSWYRDAARIGEL 179 Query 180 VEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNS 239 +Q+RRSG+ TAV VD SA++GP MA GWDP DI GDIAP+ M+D GR QP + S Sbjct 180 ADQVRRSGIEATAVAVDTSAYTGPEMAFGWDPLDIPGGDIAPMVPVMLDGGRTQPVSEES 239 Query 240 RRSRTPALDAGRELAKALGLDPAAVTIASAPA-GARQLAVVQSAPLIQRLSQMMNASDNV 298 RRS TPA DAGR LA AL +DPAAVT+ P G RQ+A VQS PL++RL MMN SDNV Sbjct 240 RRSPTPAADAGRALATALRIDPAAVTVLRGPYRGGRQIAAVQSPPLMERLRVMMNLSDNV 299 Query 299 MAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLD 358 MAE IGREVA + RPQSF A AV ++L A IDT A L DSSGLS+D+RLTARTLD Sbjct 300 MAEAIGREVAAQLGRPQSFDDAAKAVLAQLRKAGIDTTNARLFDSSGLSVDDRLTARTLD 359 Query 359 ATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSL 418 + AAAG D P LRPL+DLLPIAGGSGTL R+LD A + AGWLRAKTGSLT NSL Sbjct 360 DVITAAAGDDHPELRPLVDLLPIAGGSGTLSNRYLDTAAGREAAGWLRAKTGSLTGTNSL 419 Query 419 VGVLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGC 459 G++TD GRVLTFA +SN AGP GR A+DALA L CGC Sbjct 420 AGIVTDARGRVLTFALMSNNAGPTGRTALDALAATLRACGC 460 >gi|120406328|ref|YP_956157.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium vanbaalenii PYR-1] gi|119959146|gb|ABM16151.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium vanbaalenii PYR-1] Length=457 Score = 470 bits (1209), Expect = 3e-130, Method: Compositional matrix adjust. Identities = 289/459 (63%), Positives = 335/459 (73%), Gaps = 3/459 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 M PTRWR+ST++VVG +VL V VVV AAA + A A P P T GVVPV Sbjct 1 MRPTRWRRSTYLVVGVSVLLLVVVVVVAAAALVATRQPAEQPAVEAAPAPATAAPGVVPV 60 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 +D+A P+ G+T AL V A+PDLG+ GRITDA +G +LW + VP+ PASTNK+LT Sbjct 61 SDSADKPTPQGLTRALQAVLANPDLGRFTGRITDARSGDQLWAQGAGVPMQPASTNKMLT 120 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 AAAALLTLDR AR++TRV++ VLVG GDPTLSAAP DTWY AARI DL Sbjct 121 AAAALLTLDRDARLTTRVLSASPGVV---VLVGGGDPTLSAAPRNVDTWYRDAARIVDLA 177 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 +QIRRSGV +VQVD SA+SGP+MAPGWDP DID GDIAP+EA M+D GR QP TV SR Sbjct 178 DQIRRSGVDVKSVQVDVSAYSGPSMAPGWDPLDIDGGDIAPMEAIMLDGGRTQPVTVESR 237 Query 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 RSRTPALDAGR LA AL +DPA VT+ + A ++A VQS PL+QRL MMN SDNVMA Sbjct 238 RSRTPALDAGRALAVALRVDPAKVTVLPSAARGTEIASVQSPPLMQRLRDMMNFSDNVMA 297 Query 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 E IGREVA + RPQSF GA AV S L A IDTAGA L+DSSGLS+DNRLTA TLD Sbjct 298 EAIGREVAAEVGRPQSFDGAARAVLSTLEDAGIDTAGARLLDSSGLSVDNRLTAETLDEV 357 Query 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 +QAAAG +PALRPL+DLLPIAGGSGTL R+LD + AG+LRAKTGSLT NSL G Sbjct 358 VQAAAGDSEPALRPLVDLLPIAGGSGTLSNRYLDTDDGRAAAGYLRAKTGSLTGTNSLAG 417 Query 421 VLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGC 459 ++TD SGRVLTFA +SN+AGP GR A+DA A L CGC Sbjct 418 IVTDESGRVLTFALLSNDAGPTGRTALDAFAATLRSCGC 456 >gi|118473480|ref|YP_890334.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium smegmatis str. MC2 155] gi|118174767|gb|ABK75663.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Mycobacterium smegmatis str. MC2 155] Length=480 Score = 461 bits (1186), Expect = 1e-127, Method: Compositional matrix adjust. Identities = 299/462 (65%), Positives = 343/462 (75%), Gaps = 7/462 (1%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 M PTRWR+STHV VG AVLA V VVAAAAL T G H A P P P T GVVPV Sbjct 21 MRPTRWRRSTHVAVGVAVLALVVAVVAAAALFT-GKHSDAAEAVPPAPPPATADPGVVPV 79 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 +A TP+ G+ ALA A+PDLG + GRITDA TG ELW++ VP+ PAS NK+LT Sbjct 80 DLSAPTPTRRGLATALAAALANPDLGLITGRITDADTGAELWEQGARVPMQPASVNKVLT 139 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 AAALLTLDR AR++T VVA P G VVL G GD TLSAAP G DTWY GAARI DL Sbjct 140 TAAALLTLDRDARLTTTVVAADDQP-GLVVLRGGGDTTLSAAPKGTDTWYKGAARISDLA 198 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 +Q+R G+ T V+VD SA+SGPTMAPGWDPADID GDIAP+E+ M+D GR QPTTV SR Sbjct 199 DQVRARGIRVTRVRVDTSAYSGPTMAPGWDPADIDGGDIAPMESVMLDGGRTQPTTVESR 258 Query 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGAR---QLAVVQSAPLIQRLSQMMNASDN 297 RS++PALDAG+ LA ALG++P +VT+ P+G R +A VQSAPLI+RL QMMN SDN Sbjct 259 RSKSPALDAGKALAAALGVEPESVTLM--PSGMRGGTTIAEVQSAPLIERLRQMMNESDN 316 Query 298 VMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTL 357 VMAE I REVA A+ RPQSF GAV AV ++L + IDT+GA LVDSSGLS+DNRLTA TL Sbjct 317 VMAESIAREVAEALGRPQSFEGAVGAVLTQLRSVGIDTSGAKLVDSSGLSVDNRLTALTL 376 Query 358 DATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINS 417 D + AAAG QPALRPL+DLLPIAGGSGTL R+LD + AGWLRAKTGSLT N+ Sbjct 377 DEVVNAAAGHTQPALRPLVDLLPIAGGSGTLSNRYLDTDAGRAAAGWLRAKTGSLTGTNA 436 Query 418 LVGVLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGC 459 L G++TDRSGRVLTFA ISN AGP GR A+DALA L CGC Sbjct 437 LAGIVTDRSGRVLTFALISNNAGPTGRTAIDALAAVLRSCGC 478 >gi|169627623|ref|YP_001701272.1| peptidase S13 [Mycobacterium abscessus ATCC 19977] gi|169239590|emb|CAM60618.1| Peptidase S13 (D-alanyl-D-alanine carboxypeptidase [Mycobacterium abscessus] Length=465 Score = 456 bits (1174), Expect = 3e-126, Method: Compositional matrix adjust. Identities = 273/461 (60%), Positives = 338/461 (74%), Gaps = 3/461 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 + P WR+STH ++ AV+ +A +V A+L T +++ P P T GVVPV Sbjct 7 LDPRHWRRSTHALLAVAVVLAIAALVLLASLTTGASTAHQLQSADPEPALITPAPGVVPV 66 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 +D+A P+A G+ AL +DP LG GR+TDALTG+ELWQ+ VP+VPASTNK+LT Sbjct 67 SDSAPIPTADGLAQALDRALSDPALGMFTGRVTDALTGRELWQQGSTVPMVPASTNKVLT 126 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 AAAALLTL+R A+++T VVA +G V LVG GDP +SAAP G DTWY AARI DL Sbjct 127 AAAALLTLERDAKLTTSVVADTAGQRGLVTLVGGGDPIVSAAPAGTDTWYRDAARISDLA 186 Query 181 EQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSR 240 +Q+R+SGV T++ VD S F GP+MAPGWDPADI+ GD+API+A M+DAGR QPT +SR Sbjct 187 DQVRKSGVAVTSITVDISRFGGPSMAPGWDPADIEGGDVAPIQAVMLDAGRTQPTDYDSR 246 Query 241 RSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMA 300 RS TPALDAGR LA ALG+DP AV + +AP A+ +A VQSAPL++RL +MMNASDNVMA Sbjct 247 RSTTPALDAGRALAAALGVDPEAVRLDAAPPTAKSIASVQSAPLMERLREMMNASDNVMA 306 Query 301 ECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDAT 360 E IGREVA+A R Q+FSG VDAVTS+L +A ID L DSSGLS+D+R+TARTLD Sbjct 307 ETIGREVALATGRAQTFSGTVDAVTSQLRSAGIDLTDLTLRDSSGLSVDDRVTARTLDEV 366 Query 361 MQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVG 420 + AAAGPD+P LRPLLD+LPIAGGSGTL ERF+ +Q AGWLRAKTGSLT +N+L G Sbjct 367 IGAAAGPDKPKLRPLLDVLPIAGGSGTLSERFV--TQNQTSAGWLRAKTGSLTGVNTLAG 424 Query 421 VLTDRSGRVLTFAFISNEA-GPNGRNAMDALATKLWFCGCT 460 V+TD SGRVLTF+ + N A P RNA+D A L CGC+ Sbjct 425 VVTDVSGRVLTFSLMQNHATAPTARNAVDNTAAVLRSCGCS 465 >gi|226304107|ref|YP_002764065.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis PR4] gi|226183222|dbj|BAH31326.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis PR4] Length=441 Score = 384 bits (985), Expect = 2e-104, Method: Compositional matrix adjust. Identities = 217/404 (54%), Positives = 272/404 (68%), Gaps = 5/404 (1%) Query 57 VVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTN 116 VVPV A PSA+G+ AA+ A+PDLGK G + DALTG LW P+ PAST Sbjct 41 VVPVPTDAPIPSASGIAAAIGPAVANPDLGKFTGVVADALTGNILWSADPSTPMTPASTT 100 Query 117 KILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARI 176 K+LTA+AALL L R++T VV G G VVLVG GDPTL+A P GQ +Y AA I Sbjct 101 KVLTASAALLKLPLDHRLATTVVPGAS--PGQVVLVGGGDPTLTATPKGQSGYYANAAHI 158 Query 177 GDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTT 236 DLV+QI+ +G T+V VD+S F G MA GW PADI G I PIE+ MI+ GR T Sbjct 159 ADLVDQIKAAGTPVTSVVVDSSLFKGDNMATGWFPADIAAGYITPIESVMIEGGRYDGTQ 218 Query 237 VNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASD 296 S RS TPALDAG+ LA+ALG+DPA V++ +APAGA+ +A VQSAPL RL QMM SD Sbjct 219 DESPRSETPALDAGKVLAQALGVDPANVSLGAAPAGAKPIATVQSAPLSDRLLQMMEHSD 278 Query 297 NVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTART 356 NV+AE IGREVA+A SF+GAVDA L A D G +L DSSGLS+D+ + A+ Sbjct 279 NVLAETIGREVAIASGIEASFTGAVDATGKTLQAAGFDYTGVSLHDSSGLSVDDLIPAQV 338 Query 357 LDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAIN 416 LD M AAAG P LRPLLD LP+AGG+G+L +R+ A+ ++ AGW+RAKTG+L+ + Sbjct 339 LDRVMTAAAGDGDPKLRPLLDYLPVAGGTGSLSDRY--ASGNRTGAGWVRAKTGTLSTAS 396 Query 417 SLVGVLTDRSGRVLTFAFISNEAGPN-GRNAMDALATKLWFCGC 459 +L G + D++GRVLTFA +SN+ P R A+DA+A L CGC Sbjct 397 ALSGFVVDQNGRVLTFALMSNDRPPEVSRPALDAIAGALRNCGC 440 >gi|229489777|ref|ZP_04383634.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Rhodococcus erythropolis SK121] gi|229323287|gb|EEN89051.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Rhodococcus erythropolis SK121] Length=469 Score = 383 bits (983), Expect = 4e-104, Method: Compositional matrix adjust. Identities = 217/404 (54%), Positives = 271/404 (68%), Gaps = 5/404 (1%) Query 57 VVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTN 116 VVPV A PSA+G+ AA+ A+PDLGK G + DALTG LW P+ PAST Sbjct 69 VVPVPTDAPIPSASGIAAAIGPAVANPDLGKFTGVVADALTGNILWSTDPSTPMTPASTT 128 Query 117 KILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARI 176 K+LTA+AALL L R+ST VV G G VVLVG GDPTL+A P GQ +Y AA I Sbjct 129 KVLTASAALLKLPLDHRLSTTVVPG--TSPGQVVLVGGGDPTLTATPKGQSGYYANAAHI 186 Query 177 GDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTT 236 DLV+QI+ +G +V VD+S F G MA GW PADI G I PIE+ MI+ GR T Sbjct 187 ADLVDQIKAAGTPVNSVVVDSSLFKGDNMATGWFPADIAAGYITPIESVMIEGGRYDGTQ 246 Query 237 VNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASD 296 S RS TPALDAG+ LA+ALG+DPA V++ +APAGA+ +A VQSAPL RL QMM SD Sbjct 247 DESPRSETPALDAGKVLAQALGVDPANVSLGAAPAGAKPIATVQSAPLSDRLLQMMEHSD 306 Query 297 NVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTART 356 NV+AE IGREVA+A SF+GAVDA L A D G +L DSSGLS+D+ + A+ Sbjct 307 NVLAETIGREVAIASGIEASFTGAVDATGKTLQAAGFDYTGVSLHDSSGLSVDDLIPAQV 366 Query 357 LDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAIN 416 LD M AAAG P LRPLLD LP+AGG+G+L +R+ A+ ++ AGW+RAKTG+L+ + Sbjct 367 LDRVMTAAAGDGDPKLRPLLDYLPVAGGTGSLSDRY--ASGNRTGAGWVRAKTGTLSTAS 424 Query 417 SLVGVLTDRSGRVLTFAFISNEAGPN-GRNAMDALATKLWFCGC 459 +L G + D++GRVLTFA +SN+ P R A+DA+A L CGC Sbjct 425 ALSGFVVDQNGRVLTFALMSNDRPPEVSRPALDAIAGALRNCGC 468 >gi|307086421|ref|ZP_07495534.1| hypothetical protein TMLG_00114 [Mycobacterium tuberculosis SUMu012] gi|308364125|gb|EFP52976.1| hypothetical protein TMLG_00114 [Mycobacterium tuberculosis SUMu012] Length=195 Score = 372 bits (954), Expect = 8e-101, Method: Compositional matrix adjust. Identities = 195/195 (100%), Positives = 195/195 (100%), Gaps = 0/195 (0%) Query 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV Sbjct 1 MGPTRWRKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKAGVVPV 60 Query 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT Sbjct 61 ADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILT 120 Query 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV Sbjct 121 AAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLV 180 Query 181 EQIRRSGVTPTAVQV 195 EQIRRSGVTPTAVQV Sbjct 181 EQIRRSGVTPTAVQV 195 >gi|325675183|ref|ZP_08154868.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Rhodococcus equi ATCC 33707] gi|325553889|gb|EGD23566.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Rhodococcus equi ATCC 33707] Length=469 Score = 370 bits (949), Expect = 3e-100, Method: Compositional matrix adjust. Identities = 215/413 (53%), Positives = 269/413 (66%), Gaps = 5/413 (1%) Query 48 PRPPTVKAGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDD 107 P P T V PV D A P+ A + A LA + ++P LG G + DA TG LW R D Sbjct 60 PSPVTATPQVAPVPDDAPMPTPAALGAVLAPLVSNPALGAFTGVVADARTGTTLWSRNPD 119 Query 108 VPLVPASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQD 167 P+ PAST KILTAAAA+L+L R+ TRVV G + G +VLVG GDPTL+A P GQ Sbjct 120 TPMTPASTAKILTAAAAMLSLSPDHRVETRVVQGSR--PGELVLVGGGDPTLTAQPVGQP 177 Query 168 TWYHGAARIGDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMI 227 ++Y GA RI DLVEQIRR+G ++ VD SA++GPTMA GW P D+ G IAPIE+ MI Sbjct 178 SYYPGAPRIADLVEQIRRAGAEVDSIVVDISAYAGPTMAQGWMPEDVAAGYIAPIESVMI 237 Query 228 DAGRIQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQR 287 D R P RS TPALDAGR LA+ALG+D A VT+ A +GA +A V SAPL R Sbjct 238 DGARSDPFAEEPPRSATPALDAGRVLAQALGIDLARVTVGKAESGAAPVASVLSAPLRDR 297 Query 288 LSQMMNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLS 347 L QMM SDNV+AE I REVAVA N SF+GA +A+ L+ A T G L D SGLS Sbjct 298 LGQMMRRSDNVLAETIAREVAVAKNSEASFTGATEAIGKTLHDAGFKTDGLTLHDGSGLS 357 Query 348 LDNRLTARTLDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRA 407 +D+R+ AR + AAAG +P LRP+LD LP+AG +GTL +R+ A+ D+ AGW+RA Sbjct 358 VDDRVPARLQADILTAAAGETKPQLRPMLDDLPVAGATGTLSDRY--ASGDRTGAGWVRA 415 Query 408 KTGSLTAINSLVGVLTDRSGRVLTFAFISNEAGPN-GRNAMDALATKLWFCGC 459 KTG+L+ ++L G + D GRVLTFA +SN+ P R A+DA+A L CGC Sbjct 416 KTGTLSVASALTGYVVDVDGRVLTFALMSNDRPPEVSRPALDAVAGALRLCGC 468 >gi|312138046|ref|YP_004005382.1| d-alanyl-d-alanine carboxypeptidase [Rhodococcus equi 103S] gi|311887385|emb|CBH46697.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus equi 103S] Length=469 Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 212/413 (52%), Positives = 266/413 (65%), Gaps = 5/413 (1%) Query 48 PRPPTVKAGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDD 107 P P T V PV D A P+ A + A LA + ++P LG G + DA TG LW + D Sbjct 60 PSPVTATPQVAPVPDDAPMPTPAALGAVLAPLVSNPALGAFTGVVADARTGTTLWSQNPD 119 Query 108 VPLVPASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQD 167 P+ PAST KILTAAAA+L+L R+ TRVV G + G +VLVG GDPTL+A P GQ Sbjct 120 TPMTPASTAKILTAAAAMLSLSPDHRVETRVVQGSR--PGELVLVGGGDPTLTAQPVGQP 177 Query 168 TWYHGAARIGDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMI 227 ++Y GA RI DLVEQIRR+G ++ VD SA++GPTMA GW P D+ G IAPIE+ MI Sbjct 178 SYYPGAPRIADLVEQIRRAGAEVDSIVVDISAYAGPTMAQGWMPEDVAAGYIAPIESVMI 237 Query 228 DAGRIQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQR 287 D R P RS TPALDAGR LA+ALG+D A V + A +GA +A V SAPL R Sbjct 238 DGARSDPFAEEPPRSATPALDAGRVLAQALGIDLARVAVGKAESGAAPVASVLSAPLRDR 297 Query 288 LSQMMNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLS 347 L QMM SDNV+AE I REVAVA N SF+GA +A+ L A T G L D SGLS Sbjct 298 LGQMMRRSDNVLAETIAREVAVAKNSEASFTGATEAIGKTLYDAGFKTDGLTLHDGSGLS 357 Query 348 LDNRLTARTLDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRA 407 +D+ + AR + AAAG +P LRP+LD LP+AG +GTL +R+ A+ D+ AGW+RA Sbjct 358 VDDWVPARLQADILTAAAGETKPQLRPMLDDLPVAGATGTLSDRY--ASGDRTGAGWVRA 415 Query 408 KTGSLTAINSLVGVLTDRSGRVLTFAFISNEAGPN-GRNAMDALATKLWFCGC 459 KTG+L+ ++L G + D GRVLTFA +SN+ P R A+DA+A L CGC Sbjct 416 KTGTLSVASALTGYVVDVDGRVLTFALMSNDRPPEVSRPALDAVAGALRLCGC 468 >gi|111021373|ref|YP_704345.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1] gi|110820903|gb|ABG96187.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1] Length=461 Score = 352 bits (903), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 212/416 (51%), Positives = 269/416 (65%), Gaps = 5/416 (1%) Query 45 APPPRPPTVKAGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQR 104 AP P P T V PV D A P+A G+ AA+ AA+PDLGK +G + DA+TGQ LW Sbjct 49 APEPAPITAAPQVTPVPDDAPMPTAQGIAAAVGPAAANPDLGKFSGTVADAVTGQVLWSV 108 Query 105 LDDVPLVPASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPP 164 P+ PAST K+LTA +ALL L R++T+VV G G +VLV GDPTL+A P Sbjct 109 NPQTPMTPASTTKVLTAGSALLALPTDRRVTTKVVQGAT--PGEIVLVAGGDPTLTAKPV 166 Query 165 GQDTWYHGAARIGDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEA 224 G++ +Y GAA I LV+QIR +G+ T++ VD S +SG TMA GW P D+ G I P E Sbjct 167 GENGYYPGAAHISQLVDQIRNAGIQVTSIVVDISIYSGDTMAQGWFPTDVGAGFITPTEP 226 Query 225 AMIDAGRIQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPL 284 MID GR P S RS TPALDAGR LA ALG+ P+AVT A GA +A VQSAPL Sbjct 227 IMIDGGRADPLVDESPRSSTPALDAGRTLAGALGVAPSAVTSGVAAPGAATVASVQSAPL 286 Query 285 IQRLSQMMNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSS 344 RL QMM SDNV+AE IGREVA+ SF GAV + L A D +G L D+S Sbjct 287 RDRLRQMMEHSDNVLAEAIGREVAMNAGAEASFDGAVATIGQTLTAAGFDLSGFTLHDAS 346 Query 345 GLSLDNRLTARTLDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGW 404 GLS+D+R+ TLD + AAAG PALRP+LD LP+AG +G+L +R+ A+ ++ AGW Sbjct 347 GLSVDDRIAPHTLDQVLTAAAGDGNPALRPMLDYLPVAGATGSLSDRY--ASGNRTGAGW 404 Query 405 LRAKTGSLTAINSLVGVLTDRSGRVLTFAFISNEAGPN-GRNAMDALATKLWFCGC 459 +RAKTG+L+ ++L G + D++GRVLTFA +SN+ P R A+DALA L CGC Sbjct 405 VRAKTGTLSTASALAGYVVDQNGRVLTFALMSNDRPPEVSRPALDALAAALRTCGC 460 >gi|226363727|ref|YP_002781509.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus B4] gi|226242216|dbj|BAH52564.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus B4] Length=461 Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 210/416 (51%), Positives = 269/416 (65%), Gaps = 5/416 (1%) Query 45 APPPRPPTVKAGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQR 104 AP P P V PV D A P+A G+ AA+ AA+PDLGK +G + DA+TGQ LW Sbjct 49 APEPAPIIAAPQVTPVPDDAPVPTAQGIAAAVGPAAANPDLGKFSGTVADAVTGQVLWSV 108 Query 105 LDDVPLVPASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPP 164 P+ PAST K+LTA +ALL+L R++T+VV G G +VLV GDPTL+A P Sbjct 109 NPQTPMTPASTTKVLTAGSALLSLPSDHRVTTKVVQGAT--PGEIVLVAGGDPTLTAKPV 166 Query 165 GQDTWYHGAARIGDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEA 224 G++ +Y GAA I LV+QIR +G+ T + VD +SG TMA GW P D+ G I P E Sbjct 167 GENGYYPGAAHISQLVDQIRAAGIAVTRIVVDTGIYSGDTMAQGWFPTDVGAGFITPTEP 226 Query 225 AMIDAGRIQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPL 284 MID GR P S RS TPALDAGR LA ALG+DP+AV A GA +A VQSAPL Sbjct 227 IMIDGGRADPLVDESPRSSTPALDAGRTLAGALGVDPSAVASGVAAPGAATVASVQSAPL 286 Query 285 IQRLSQMMNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSS 344 RL QMM SDNV+AE IGREVA+ SF+GAV + L+ A D +G L D+S Sbjct 287 RDRLRQMMEHSDNVLAEAIGREVAMNAGAEASFAGAVATIGRTLSGAGFDLSGLTLHDAS 346 Query 345 GLSLDNRLTARTLDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGW 404 GLS+D+R+ TLD + AAAG PALRP+LD LP+AG +G+L +R+ A+ ++ AGW Sbjct 347 GLSVDDRIAPHTLDQVLTAAAGEGNPALRPMLDYLPVAGATGSLSDRY--ASGNRTGAGW 404 Query 405 LRAKTGSLTAINSLVGVLTDRSGRVLTFAFISNEAGPN-GRNAMDALATKLWFCGC 459 +RAKTG+L+ ++L G + D++GRVLTFA +SN+ P R A+DALA L CGC Sbjct 405 VRAKTGTLSTASALAGYVVDQNGRVLTFALMSNDRPPEVSRPALDALAAALRTCGC 460 >gi|326384093|ref|ZP_08205776.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase [Gordonia neofelifaecis NRRL B-59395] gi|326197253|gb|EGD54444.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase [Gordonia neofelifaecis NRRL B-59395] Length=448 Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 203/416 (49%), Positives = 261/416 (63%), Gaps = 9/416 (2%) Query 47 PPRPP--TVKAGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQR 104 P RP TV+ +VPV+ A P+ GV ALA DP LGKL G ++D LTGQ LW + Sbjct 37 PARPAAATVQPSIVPVSSNAPAPTPRGVQKALATPLKDPALGKLTGEVSDPLTGQVLWSQ 96 Query 105 LDDVPLVPASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPP 164 P VPAS KILTA+A LL L +R++T+VV G G +LVGAGDPTL++ P Sbjct 97 GAAEPRVPASNAKILTASAVLLALPHDSRVTTKVVLGSD---GEAILVGAGDPTLTSTPV 153 Query 165 GQDTWYHGAARIGDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEA 224 G+ ++Y + +L QI+RSG T++ VD S F+GPTM P WD DI+ GDIAPIE+ Sbjct 154 GETSFYSDPGHLSELAAQIKRSGRKVTSIAVDTSLFTGPTMQPTWDRRDIEGGDIAPIES 213 Query 225 AMIDAGRIQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPL 284 M+D GRI+P+ S R+ PALDAGR LA LGL+ + VT A+AP+ A ++A VQSAPL Sbjct 214 LMVDGGRIKPSEEYSPRTTEPALDAGRALADELGLN-SPVTEATAPSAAPEIASVQSAPL 272 Query 285 IQRLSQMMNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSS 344 R+ MM SDNV+AE +G E+A A S G AV + L+ A LVDSS Sbjct 273 TVRVGDMMRYSDNVLAESLGIELARATGGEASIEGGSQAVLATLSKNGFAARTATLVDSS 332 Query 345 GLSLDNRLTARTLDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGW 404 GLS +R+ A LD M +AAG QP LR LLD LP+A G+GTL +RF TD AGW Sbjct 333 GLSYSDRVPASLLDELMSSAAGDGQPKLRSLLDSLPVAHGTGTLSDRFDPKLTDG--AGW 390 Query 405 LRAKTGSLTAINSLVGVLTDRSGRVLTFAFISNEAGP-NGRNAMDALATKLWFCGC 459 +R KTG+LT ++SL G++ GRVL+FA IS P + R A+DA+ L CGC Sbjct 391 VRGKTGTLTGVSSLTGIVQTVDGRVLSFAMISGGTSPADARPAVDAVVGALRDCGC 446 >gi|54022350|ref|YP_116592.1| putative penicillin binding protein [Nocardia farcinica IFM 10152] gi|54013858|dbj|BAD55228.1| putative penicillin binding protein [Nocardia farcinica IFM 10152] Length=475 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 217/436 (50%), Positives = 270/436 (62%), Gaps = 26/436 (5%) Query 45 APPPRPPTVKAGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQR 104 A PP P V P A A PS AGV+ ALA +PDLG G +TDA +G LW Sbjct 46 AAPPAPVKAFPRVTP-ATEAPAPSPAGVSTALAAAVTNPDLGAFTGIVTDAESGVTLWSA 104 Query 105 LDDVPLVPASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPP 164 P++P+ST KILTAAAALL L R++T VV G + G +VLVG GDPTL+A P Sbjct 105 DPGRPMIPSSTAKILTAAAALLALPADRRVATEVVVG--SAPGELVLVGGGDPTLTAQPD 162 Query 165 GQDTWYHGAARIGDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEA 224 G+ +Y AAR+ DLV+QI+ SG + VD SAFSGPTMA GWDP D+ G IAPIE Sbjct 163 GKG-YYPNAARLSDLVDQIKASGRAVDTIVVDTSAFSGPTMARGWDPIDVPEGSIAPIEP 221 Query 225 AMIDAGRIQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPL 284 MID GR+ P S R+ PALDAGR LA ALGLDPA V +A A ++A V SAPL Sbjct 222 VMIDGGRLSPLVEYSPRTTEPALDAGRALATALGLDPARVRAGTAAPDAAEVAAVHSAPL 281 Query 285 IQRLSQMMNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSS 344 RL MM SDNV+AE IGRE+A+A SF+GAV AV + L A D +G + D+S Sbjct 282 RDRLRDMMVHSDNVLAETIGREIALATGHEPSFTGAVAAVRATLEKAGFDVSGMDMHDTS 341 Query 345 GLSLDNRLTARTLDATMQAAAGPD-----QPA--------------LRPLLDLLPIAGGS 385 GLS+D+RL AR LD + AA P +PA L PLLD LP+AG + Sbjct 342 GLSVDDRLPARLLDKVIATAAQPTGTALARPAGTKAEPESDRLAATLAPLLDQLPVAGAT 401 Query 386 GTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVGVLTDRSGRVLTFAFISNEAGPN-GR 444 G+L ER++ ++ AGW+RAKTG+LT ++LVG + DR GRVLTFA +SN+ P R Sbjct 402 GSLAERYV--TRNREGAGWVRAKTGTLTVASALVGYVLDRDGRVLTFALMSNDRPPEVSR 459 Query 445 NAMDALATKLWFCGCT 460 A+DA+A L CGC+ Sbjct 460 PALDAIAGTLRNCGCS 475 >gi|296138289|ref|YP_003645532.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase [Tsukamurella paurometabola DSM 20162] gi|296026423|gb|ADG77193.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase [Tsukamurella paurometabola DSM 20162] Length=456 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 208/416 (50%), Positives = 263/416 (64%), Gaps = 11/416 (2%) Query 47 PPRPPT--VKAGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQR 104 PPRP + PVA T+A P+AAGV A +A +PDLG G I DA +G LW+R Sbjct 48 PPRPAEQAYTPAIAPVAATSA-PTAAGVRAQIAAALQNPDLGDFTGVIADAASGGVLWER 106 Query 105 LDDVPLVPASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPP 164 P PAST K+LTAAAALLTL RI+T VVAG Q G VV VGAGDPTL A Sbjct 107 DAARPRTPASTTKVLTAAAALLTLPADKRITTTVVAGAQ--PGEVVFVGAGDPTLRA--- 161 Query 165 GQDTWYHGAARIGDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEA 224 G D+ + A +I DL Q+RR G T V VD + F+GP +A GW+ ADI GD+ P++A Sbjct 162 GSDSMFTDAPKISDLAAQLRRGGTKITRVVVDTALFTGPDLARGWERADIAGGDVTPMQA 221 Query 225 AMIDAGRIQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPL 284 DAGRI+P S R PA+ AGR LA ALGL P AV+ +AP+GA QLA V+SAPL Sbjct 222 LTADAGRIRPGEDYSPRVPDPAVSAGRALATALGLPPTAVSTGTAPSGAAQLASVRSAPL 281 Query 285 IQRLSQMMNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSS 344 RL M SDNV+AE IGREVA A +P SF G+ AVT+ L A D G L D Sbjct 282 DVRLRDAMIHSDNVLAESIGREVAAAGGQPLSFDGSARAVTAALRNAGFDLTGVELSDVD 341 Query 345 GLSLDNRLTARTLDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGW 404 GLS NR++A+ LD + AAAG +P LRPLLD+LP+ G SGTL +R++ A ++ AG+ Sbjct 342 GLSTLNRISAKVLDEILTAAAGNGKPQLRPLLDMLPVGGSSGTLADRYVTA--NRPGAGY 399 Query 405 LRAKTGSLTAINSLVGVLTDRSGRVLTFAFISNEAGPN-GRNAMDALATKLWFCGC 459 +RAKTGSL+ +++L G + DR G ++TF +S+ + R AMDA+ L CGC Sbjct 400 VRAKTGSLSGVSTLSGFVADREGSIITFTLMSSGTPVDVARPAMDAVTAALRGCGC 455 >gi|296392831|ref|YP_003657715.1| D-alanyl-D-alaninecarboxypeptidase/ D-alanyl-D-alanine-endopeptidase [Segniliparus rotundus DSM 44985] gi|296179978|gb|ADG96884.1| D-alanyl-D-alaninecarboxypeptidase/ D-alanyl-D-alanine-endopeptidase [Segniliparus rotundus DSM 44985] Length=494 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 195/382 (52%), Positives = 256/382 (68%), Gaps = 7/382 (1%) Query 82 DPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAALLTLDRQARISTRVVAG 141 +P L + +G + D ++G LWQR D + PAST K+LTAA+A+L+L AR++TRVVAG Sbjct 115 NPLLARFSGVVLDGVSGAALWQRDPDAAMTPASTMKLLTAASAVLSLPLGARLATRVVAG 174 Query 142 GQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQIRRSGVTPT-AVQVDASAF 200 +P G VV+VGAGDPTLSAAP G+ ++Y GAAR+ DLV Q+++ P V VD SA+ Sbjct 175 -SDP-GQVVIVGAGDPTLSAAPDGEQSFYPGAARLDDLVAQVKQHHPGPVDEVLVDDSAY 232 Query 201 SGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRTPALDAGRELAKALGLD 260 GP A GW P D+ +G I P++ M+D GR+ + S R+ TPALD G+ELA+ LG D Sbjct 233 EGPNFAQGWLPGDVADGFITPMDPLMLDGGRLDRSRDESPRTTTPALDTGKELARRLGAD 292 Query 261 PAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIGREVAVAINRPQSFSGA 320 P +A APAGA LA VQSAPL +R+ Q M ASDNV+AE +GREVA +P SFSGA Sbjct 293 PERTRLAPAPAGAVALAQVQSAPLRERILQFMLASDNVLAEAVGREVARGAGKPASFSGA 352 Query 321 VDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDATMQAAAGPDQPALRPLLDLLP 380 V A L A +D A +DS+GLSLD+RL+ARTL + A G LRPLLD+LP Sbjct 353 VAAENEVLGKAGVDLAATRRLDSNGLSLDDRLSARTLARVLALATGRSS-GLRPLLDMLP 411 Query 381 IAGGSGTLGERFLDAATDQGP--AGWLRAKTGSLTAINSLVGVLTDRSGRVLTFAFISNE 438 +AG +GTL ERF D + Q AG++RAKTGSL +++L G D+ GR+L FAF+SN+ Sbjct 412 VAGATGTLAERFRDPLSGQNTAGAGFVRAKTGSLDDVSTLAGETADQDGRMLVFAFLSND 471 Query 439 AGP-NGRNAMDALATKLWFCGC 459 + R A+DALA+ L CGC Sbjct 472 GATWDTRAALDALASALRGCGC 493 >gi|343924383|ref|ZP_08763933.1| D-alanyl-D-alanine carboxypeptidase [Gordonia alkanivorans NBRC 16433] gi|343765715|dbj|GAA10859.1| D-alanyl-D-alanine carboxypeptidase [Gordonia alkanivorans NBRC 16433] Length=439 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 211/449 (47%), Positives = 273/449 (61%), Gaps = 19/449 (4%) Query 18 VLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPPTVKA-----GVVPVADTAATPSAAGV 72 VLA V+ AL R A PP PP A + PVA TA P+ AGV Sbjct 2 VLALVSTAAVVVAL------RLDTEAELPPGIPPQPAAISPDPQIDPVAATAPAPTPAGV 55 Query 73 TAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAALLTLDRQA 132 + A+A +P LG L+G I+D+LTG+ LW R P +PAS +K+L+AAA L + A Sbjct 56 SRAIAPALRNPALGVLSGMISDSLTGEVLWSRNPGRPRIPASNDKVLSAAAFLEAMPHDA 115 Query 133 RISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQIRRSGVTPTA 192 R++T VVAG G V+L GAGDPTLSA P DT+Y ARI DL EQI+++G+ T+ Sbjct 116 RLTTTVVAGSN---GQVILKGAGDPTLSAQPADADTFYSEPARIADLAEQIKQAGIPVTS 172 Query 193 VQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRTPALDAGRE 252 V VD SAFSGPTM WD DI GDIAPIE+ M+D R++P S RS TP + AG E Sbjct 173 VAVDLSAFSGPTMDRTWDRRDIQGGDIAPIESLMVDGARLEPLDEYSPRSATPGIMAG-E 231 Query 253 LAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIGREVAVAIN 312 A A VT APAG R +A V+SAPL+ R++ M+ SDNV+AE + E++V Sbjct 232 ALAAALDVDAPVTEVPAPAGDRVVAKVESAPLVTRVNDMLRYSDNVLAETLSIELSVHRG 291 Query 313 RPQSFSGAVDAVTSRLNTAHIDT-AGAALVDSSGLSLDNRLTARTLDATMQAAAGPDQPA 371 P + + VDAV L+T + G L D+SG+S NR T LDA M AA+GP +P Sbjct 292 GPATLAAGVDAVEQVLSTTFPEQWKGTTLADASGISYANRTTPALLDAVMTAASGPSRPK 351 Query 372 LRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVGVLTDRSGRVLT 431 LRP+LD LPIA G+GTL +RF AT G AGW+RAKTG+LT ++SL G++ GRVL+ Sbjct 352 LRPMLDGLPIAAGTGTLADRF-PVATTPG-AGWVRAKTGTLTGVSSLTGIVQTIDGRVLS 409 Query 432 FAFISNEAGP-NGRNAMDALATKLWFCGC 459 FA +S P + R A+DA+ +L CGC Sbjct 410 FALMSGGTSPADARPALDAVVGQLRECGC 438 >gi|317507764|ref|ZP_07965468.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Segniliparus rugosus ATCC BAA-974] gi|316253963|gb|EFV13329.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Segniliparus rugosus ATCC BAA-974] Length=442 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 200/416 (49%), Positives = 268/416 (65%), Gaps = 9/416 (2%) Query 50 PPTV--KAGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDD 107 PP V + ++PV+ A +P+AAGV AAL + +P L + +G + D +GQ LWQR D Sbjct 29 PPLVVPRPQILPVSPDAPSPTAAGVAAALDPLGENPVLARFSGVVLDGASGQVLWQRDAD 88 Query 108 VPLVPASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQD 167 + PAST K++TAA+A+ +L R++TRVVAG + G VV+VGAGDPTLSAA G+ Sbjct 89 AAMTPASTMKLVTAASAVASLPLDGRLATRVVAG--SVPGQVVIVGAGDPTLSAASEGEK 146 Query 168 TWYHGAARIGDLVEQIRRSGVTPT-AVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAM 226 +Y A R+ DLV Q+R+ P V VD SA+ GP GW P DI G I P++ M Sbjct 147 PFYADAPRLDDLVAQVRQRHPGPVDEVLVDESAYQGPDFGQGWLPEDIAGGFITPMQPLM 206 Query 227 IDAGRIQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQ 286 +D GR+ + S R+ TPALDAG+ELA+ LG DP +AP GA +LA V SAPL + Sbjct 207 LDGGRLDRSRDESPRTPTPALDAGKELARRLGADPDRTRAGTAPPGAAELAKVLSAPLRE 266 Query 287 RLSQMMNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGL 346 R+ Q M ASDNV+AE +GREVA +P SF GAV+A L A +D + A +DS+GL Sbjct 267 RILQFMLASDNVLAEAVGREVARGAGKPASFDGAVEAEREVLGKAGLDLSSAQRLDSNGL 326 Query 347 SLDNRLTARTLDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLD--AATDQGPAGW 404 SLD+R++A L + A G + ALRPLLDLLP+AG +GTL ERF D + + AGW Sbjct 327 SLDDRVSASVLARLVGLATGRAE-ALRPLLDLLPVAGATGTLYERFSDPISGKETAGAGW 385 Query 405 LRAKTGSLTAINSLVGVLTDRSGRVLTFAFISNEAGP-NGRNAMDALATKLWFCGC 459 +RAKTGSL + +L G +D+ GR+L FAF+SN+ + R A+DALA+ L CGC Sbjct 386 VRAKTGSLDNVATLAGATSDQDGRMLVFAFMSNDGATWDTRAALDALASALRGCGC 441 >gi|262203877|ref|YP_003275085.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase [Gordonia bronchialis DSM 43247] gi|262087224|gb|ACY23192.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase [Gordonia bronchialis DSM 43247] Length=465 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 205/418 (50%), Positives = 260/418 (63%), Gaps = 11/418 (2%) Query 47 PPRPPTVKAG--VVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQR 104 PP+P V V PVA A P+ AGVT +A DP LG L G+I+DA+TGQ LW R Sbjct 53 PPQPALVTPDPQVRPVAANAPEPTPAGVTREIADELRDPALGALTGQISDAITGQVLWSR 112 Query 105 LDDVPLVPASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPP 164 P +PAS +K+LTAAAALL L R++T VVAG G ++L GAGDPTLSA P Sbjct 113 NAGTPRIPASNDKVLTAAAALLALPHDQRLTTSVVAGTN---GQIILKGAGDPTLSAQPV 169 Query 165 GQDTWYHGAARIGDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEA 224 G DT+Y RI DL QIRRSGV +V +D SAF GPTM WD DI GDIAPIE+ Sbjct 170 GADTFYTDPGRIADLATQIRRSGVPVRSVAIDLSAFEGPTMDSTWDRRDIAGGDIAPIES 229 Query 225 AMIDAGRIQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPL 284 M+D R++P S R+ TP L AGR LAKAL +D V A+AP + +A VQSAPL Sbjct 230 LMVDGARVEPLDEYSPRTPTPGLAAGRALAKALDVD-GDVAEATAPVNGQVIASVQSAPL 288 Query 285 IQRLSQMMNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDT-AGAALVDS 343 + R++ M+ SDNV+AE + E+AV + V AV + L G +L D+ Sbjct 289 VTRVNDMLRYSDNVLAETLSVELAVHQGLSPTLESGVSAVRNTLQQTFAQQWEGTSLHDA 348 Query 344 SGLSLDNRLTARTLDATMQAAAGPDQPALRPLLDLLPIAGG-SGTLGERFLDAATDQGPA 402 SGLS NR+ A LD M AA+GP QP +RP+LD LP+A G +GTL +RF D T+ G A Sbjct 349 SGLSYANRVPAELLDVVMTAASGPAQPKMRPMLDGLPVAAGLAGTLSDRF-DPRTNPG-A 406 Query 403 GWLRAKTGSLTAINSLVGVLTDRSGRVLTFAFISNEAGP-NGRNAMDALATKLWFCGC 459 GW+RAKTG+LT ++SL G++ GRVL+FA +S P R A+DA+ +L CGC Sbjct 407 GWVRAKTGTLTGVSSLTGIVQTVDGRVLSFAMMSGGTSPAAARPALDAVIGQLRECGC 464 >gi|134097005|ref|YP_001102666.1| hypothetical protein SACE_0392 [Saccharopolyspora erythraea NRRL 2338] gi|291006249|ref|ZP_06564222.1| hypothetical protein SeryN2_17163 [Saccharopolyspora erythraea NRRL 2338] gi|133909628|emb|CAL99740.1| hypothetical protein SACE_0392 [Saccharopolyspora erythraea NRRL 2338] Length=1264 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 190/426 (45%), Positives = 250/426 (59%), Gaps = 19/426 (4%) Query 45 APPPRPPTVKAGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQR 104 A PP P ++ + P+ D A P V+AALA A+P LG G + DA TG +WQ+ Sbjct 846 AEPPAPVRLQPSIKPLDDGAPLPRQQRVSAALAGPLANPALGTFGGTVIDAQTGAPVWQQ 905 Query 105 LDDVPLVPASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPP 164 L PAST K+LT +AALL LD Q R ST+VV G + G VVLVG GDPTLS P Sbjct 906 SPGQALTPASTGKLLTMSAALLALDHQQRFSTKVVRGPEP--GSVVLVGGGDPTLSTLGP 963 Query 165 GQDTWYHGAARIGDLVEQIRR-SGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIE 223 G+DT Y GAARI DL EQ+R+ +G + + + VD +SGP MAPGW P D+ G +AP+E Sbjct 964 GEDTVYTGAARIDDLAEQVRKATGGSVSRIYVDVGRYSGPKMAPGWLPEDVQAGYVAPME 1023 Query 224 AAMIDAGRIQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAP 283 M++ GR PT S R++TPAL AG+ LA LG +V +AP A+ L V+S P Sbjct 1024 PLMLNGGRADPTKDTSPRTQTPALQAGQRLASKLGT--GSVQEGNAPVNAQVLGEVKSPP 1081 Query 284 LIQRLSQMMNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDS 343 + ++ SDNV+AE + REVA+A SF+GA AV L D +G +VD Sbjct 1082 VQDMAEIVLQHSDNVLAEALAREVAIATGNEPSFAGASKAVREVLQRNGFDLSGNTMVDG 1141 Query 344 SGLSLDNRLTARTLDATMQAAAGPDQPA---------LRPLLDLLPIAGGSGTLGERFLD 394 SGLSLD+R+T + L + + AA P P LR LL LP+A GSG+L +R+ D Sbjct 1142 SGLSLDDRVTPQLLGSLLAAATAPAGPEGGLEPKSAKLRALLPGLPVAAGSGSLHDRYTD 1201 Query 395 AATDQGPAGWLRAKTGSLTAINSLVGVLTDRSGRVLTFAFISN-EAGPNGRNAMDALATK 453 ++ GW+RAKTG+L NSL G + +GR+L FA +SN R A+D LA Sbjct 1202 SSG----RGWVRAKTGTLDGANSLAGTVVTENGRLLVFALMSNGTMSAQARPALDDLAIA 1257 Query 454 LWFCGC 459 L CGC Sbjct 1258 LRDCGC 1263 >gi|331699848|ref|YP_004336087.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Pseudonocardia dioxanivorans CB1190] gi|326954537|gb|AEA28234.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Pseudonocardia dioxanivorans CB1190] Length=471 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 194/410 (48%), Positives = 248/410 (61%), Gaps = 13/410 (3%) Query 59 PVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKI 118 P+ A P+AAG+TAAL V LG G + D TG +LWQR D PL P ST K+ Sbjct 65 PLPADAPLPTAAGLTAALQPVTGTSALGTFGGAVVDPSTGSQLWQRAVDQPLAPGSTAKL 124 Query 119 LTAAAALLTLDRQARISTRVVAGGQNPQ-GPVVLVGAGDPTLSAAPPGQDTWYHGAARIG 177 LT+AAALLTL + T+VV Q P G VV+VG GDP+L+ PPG+D+ Y A R+ Sbjct 125 LTSAAALLTLAGTDHLYTKVV---QGPTPGSVVIVGGGDPSLTDLPPGKDSVYPDAPRLA 181 Query 178 DLVEQIRRS--GVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPT 235 DL + +S T+V VD S ++GPT A GWD ADI GDI PIE M+D GRI PT Sbjct 182 DLAAAVEKSMGNQKITSVIVDTSRYTGPTFAQGWDRADIAGGDITPIEPLMLDGGRIDPT 241 Query 236 TVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNAS 295 + R PA AG+ AK LGLDP+ V+ +AP A+ L V SA + + M+ AS Sbjct 242 AQDGARVADPAGAAGQAFAKELGLDPSVVSSGTAPPNAQVLGTVSSASISDLIEYMLEAS 301 Query 296 DNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTAR 355 DNV AE + REVA+A SF+G V + L+ A ID +GA LVD SGLS +R+ R Sbjct 302 DNVTAEILAREVAIARGGEPSFTGGAAQVLAALSQARIDPSGAVLVDGSGLSTVDRIPPR 361 Query 356 TLDATMQAAA----GPDQP-ALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTG 410 L + AAA GPD LRP+L LP+AGG GTL +RF + G G +RAKTG Sbjct 362 LLTGILAAAAAPPQGPDDTDFLRPILAGLPVAGGDGTLEDRFGTGTSAAG-RGVVRAKTG 420 Query 411 SLTAINSLVGVLTDRSGRVLTFAFISNEAGP-NGRNAMDALATKLWFCGC 459 +LT ++SL GV+TD GR+L FAF+SN P + R +DA+A +L CGC Sbjct 421 TLTGVSSLAGVVTDADGRLLVFAFMSNGPSPADVRPRLDAIAAELSRCGC 470 >gi|333917985|ref|YP_004491566.1| putative D-alanyl-D-alanine carboxypeptidase [Amycolicicoccus subflavus DQS3-9A1] gi|333480206|gb|AEF38766.1| Putative D-alanyl-D-alanine carboxypeptidase [Amycolicicoccus subflavus DQS3-9A1] Length=466 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 215/463 (47%), Positives = 271/463 (59%), Gaps = 25/463 (5%) Query 12 VVVGAAVLAFVAVVVAAAALVT---TGGHRAG-VRAPAPPPRPPTVKAGVVPVADTAATP 67 ++ GAA++ + ++ A L+T R+G V A APPP T+ ++PV+ A P Sbjct 1 MLTGAALVVVLLILAGTATLITARFVESFRSGQVHAIAPPPPLVTLDPAILPVSSAAPVP 60 Query 68 SAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAALLT 127 S V ALA +DP LG LAG+I+DA TG LW + P +PAS+ K+LTAAAALL Sbjct 61 SREEVAVALAPWLSDPALGSLAGQISDANTGTALWTQDPASPRIPASSVKLLTAAAALLV 120 Query 128 LDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQIRRSG 187 L +R+ T VVA G P G VLVGAGD TLSA P T+Y GAAR+ DLV Q+R SG Sbjct 121 LPHDSRVET-VVAAGDEP-GVAVLVGAGDVTLSAQPEDASTFYDGAARLDDLVAQLRDSG 178 Query 188 VTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRTPAL 247 V T V VD A++G +APGW+ + G IAP+E M+D GRI+P S R PA+ Sbjct 179 VEITRVLVDTDAYTGARLAPGWNSESVGEGYIAPMEPVMLDGGRIEPLEPESARWEEPAI 238 Query 248 DAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIGREV 307 AGR LA+ LG DPA V I SA A LA V SA L R+ Q M SDNV+AE IGREV Sbjct 239 AAGRTLAERLGADPAEVGIGSASDDAPVLARVSSASLRVRVEQAMQLSDNVLAEAIGREV 298 Query 308 AVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDATMQAAAGP 367 AVA P SF GA AV S L + G L D+SGLS +N L LD M AA Sbjct 299 AVAEAEPASFRGATRAVRSVLAAHGVAMDGVDLADTSGLSRENALPVSVLDGLMVRAAAE 358 Query 368 DQPALRPLLD---------------LLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSL 412 D L D LLP+A G+GTL +RF D+A + AGW+RAKTG+L Sbjct 359 DD-GLGEREDPTGSGQVGLLRPLLDLLPVAAGTGTLEDRFFDSA--EAGAGWVRAKTGTL 415 Query 413 TAINSLVGVLTDRSGRVLTFAFISNEAGP-NGRNAMDALATKL 454 +++L G + + GRVLTFAFIS ++ R A+DALA +L Sbjct 416 DGVSALTGYVVTQRGRVLTFAFISTDSNAFEARPALDALAAQL 458 >gi|302530794|ref|ZP_07283136.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Streptomyces sp. AA4] gi|302439689|gb|EFL11505.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Streptomyces sp. AA4] Length=545 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 186/401 (47%), Positives = 238/401 (60%), Gaps = 13/401 (3%) Query 67 PSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAALL 126 PSA GV A L+ A L +L+G + D +G LW + PL PAST KILT +AALL Sbjct 149 PSANGVAAKLSGPAGAAALSQLSGSVIDPASGTVLWDHASNTPLTPASTTKILTVSAALL 208 Query 127 TLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDT-WYHGAARIGDLVEQIRR 185 ++ RIST++V G Q G V++VG GDP+L+A P G D+ Y GAA + DLV Q+++ Sbjct 209 AMEPTKRISTKIVQGAQ--PGTVIIVGGGDPSLTALPVGTDSPLYPGAAHVDDLVNQVKK 266 Query 186 SGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRTP 245 +G VQ+DASAFSGP APGW+P+D + API AM D GR P + RS P Sbjct 267 AGGDVKKVQLDASAFSGPNTAPGWEPSDAPSLYGAPIVPAMTDGGRGNPKVDETMRSGNP 326 Query 246 ALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIGR 305 + +A LG PA A AP GA+ L VQSAPL ++ SDNV+A+ +GR Sbjct 327 GTALTQLVADKLGASPAGP--AKAPEGAKVLGEVQSAPLPDLAYALLQISDNVLADSLGR 384 Query 306 EVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDATMQAAA 365 +VA+A SF+GA AV L D G L D+SGLS N++ AR L + AAA Sbjct 385 QVAMATGGEASFAGASAAVKKVLADHGFDVNGLQLFDTSGLSNQNKVPARLLAQVLAAAA 444 Query 366 GPD-----QPALRPLLDLLPIAGG-SGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLV 419 GPD P LRPLL LP+AG GTL R+ T QG GW+RAKTG+LT +N+L Sbjct 445 GPDGKDPNTPKLRPLLAGLPVAGSPEGTLHGRYHSGET-QGGKGWVRAKTGTLTGVNTLA 503 Query 420 GVLTDRSGRVLTFAFISNEAGPN-GRNAMDALATKLWFCGC 459 G + D RVL FAF+SN + N G+ A+D LAT L CGC Sbjct 504 GYVLDSDNRVLAFAFMSNGSEKNSGQAALDVLATALRGCGC 544 >gi|256374463|ref|YP_003098123.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase [Actinosynnema mirum DSM 43827] gi|255918766|gb|ACU34277.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase [Actinosynnema mirum DSM 43827] Length=1016 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 199/464 (43%), Positives = 256/464 (56%), Gaps = 18/464 (3%) Query 7 RKSTHVVVGAAVLAFVAVVVAAAALVTTGGHRAGVRAPAPPPRPP-TVKAGVVPVADTAA 65 RK VVVGA V AA A V G G + PP PP V V + A Sbjct 561 RKRPLVVVGALAAVLVLFGGAALAAVQLGWLETGPTSTTQPPAPPAQVDLAVRALGPDAP 620 Query 66 TPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAAL 125 P+ AGV A L A+ LG L G + D + LW + + PLVPAST K L AAAAL Sbjct 621 APTPAGVQAVLQGPLANGALGNLTGTVIDPASKTVLWHQGETTPLVPASTVKNLVAAAAL 680 Query 126 LTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQIRR 185 L LD + +T+VV G + G VVLVG GDPTLS+ P G+ + Y GA + +LVEQ++ Sbjct 681 LQLDHTTQFTTKVVQGAE--PGTVVLVGGGDPTLSSLPEGRSSVYPGAPTLDELVEQVKA 738 Query 186 SGVTPTAVQVDASAFSG-PTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRT 244 SG T V+ D S +S P +APG DP D+ G I I M+D R PT ++ R+ T Sbjct 739 SGPI-TEVEYDISRYSAEPGLAPGVDPNDVAAGFITNIGPLMLDGARSDPTKGDTPRTAT 797 Query 245 PALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIG 304 PA DA + LA LG T+A P A+ L V+S PL Q + MM SDNV+AE + Sbjct 798 PAPDAAKALADRLGATVGGKTLA--PQAAKVLGEVKSVPLDQLIENMMQLSDNVLAETLA 855 Query 305 REVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDATMQAA 364 REVA A N S+ GA AV L D G D+SG+S+ N++ A+ L + AA Sbjct 856 REVAKARNAETSYEGATKAVRDVLTENGFDLTGVITSDASGMSVQNKVPAKLLGDLLTAA 915 Query 365 AGPDQPA------LRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSL 418 A PD LRPLL L +AGG+GTL ERF + + GW+R KTG+LT ++SL Sbjct 916 ARPDAATDPVTTRLRPLLTALAVAGGNGTLKERFAQSPAGK---GWIRGKTGTLTEVHSL 972 Query 419 VGVLTDRSGRVLTFAFISNEAGP--NGRNAMDALATKLWFCGCT 460 GV+ D GR+L FAF+SN +G R +DALA +L CGC+ Sbjct 973 AGVVVDTDGRLLVFAFMSNGSGDALGARAGLDALAAQLRGCGCS 1016 >gi|257057524|ref|YP_003135356.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family [Saccharomonospora viridis DSM 43017] gi|256587396|gb|ACU98529.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family [Saccharomonospora viridis DSM 43017] Length=517 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 178/430 (42%), Positives = 242/430 (57%), Gaps = 23/430 (5%) Query 42 RAPAPPPRPPTVKAGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQEL 101 +A P PR T+ V P ++A TP+ AGV AA+ + DP LG L G + D TG L Sbjct 98 KADPPAPREITLALQVPP--ESAPTPTPAGVGAAIDDLVTDPALGTLLGSVVDPATGTTL 155 Query 102 WQRLDDVPLVPASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSA 161 W+R D L PAST K+LT+AAALL LD R T+VVAG + G VVLVG GD TLS+ Sbjct 156 WERNADQALAPASTTKLLTSAAALLVLDHDMRFPTKVVAGAE--PGTVVLVGGGDVTLSS 213 Query 162 APPGQDTWYHGAARIGDLVEQIRR-SGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIA 220 P G+++ + GAA + DLVEQ+R +G + V++D SAF+GPT W P D+ + + Sbjct 214 LPEGEESIFPGAAHLDDLVEQVREATGGQVSRVELDLSAFTGPTEGRDWAPEDVPSTYMV 273 Query 221 PIEAAMIDAGRIQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQ 280 + M+D GR PT S PA A+ LG + T +AP GA+ L V Sbjct 274 QTQPVMLDGGRTDPTDEGSMGRSDPAGHLVETFAERLGAEAGGTT--TAPEGAKVLGEVW 331 Query 281 SAPLIQRLSQMMNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAAL 340 S P+ + + + SDN+++E + R+VA+A + SF GA +A L+ +D G L Sbjct 332 SPPVDELVRVALVESDNLVSEVLARQVAIAEGKQPSFEGAAEATLEVLSRHGVDVTGVEL 391 Query 341 VDSSGLSLDNRLTARTLDATMQAAAGPDQP-----ALRPLLDLLPIAGGSGTLGERFLDA 395 D SGLS NR+ TL + AA PD LRPLLD LP+AGGSGTL R+ Sbjct 392 NDGSGLSPSNRIPPATLTQLLAMAASPDTDNEVTVKLRPLLDGLPVAGGSGTLSTRY--- 448 Query 396 ATDQGPA----GWLRAKTGSL--TAINSLVGVLTDRSGRVLTFAFISNEAGPNGRNAMDA 449 DQGPA GW+RAKTG++ +++L GV+ RVL FA +SN A+D Sbjct 449 --DQGPATQGRGWVRAKTGTIPVERVHTLAGVVLTEDDRVLVFALMSNGGDSGAPAALDR 506 Query 450 LATKLWFCGC 459 ++ +L CGC Sbjct 507 ISARLRGCGC 516 >gi|300790560|ref|YP_003770851.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei U32] gi|299800074|gb|ADJ50449.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei U32] gi|340532247|gb|AEK47452.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei S699] Length=812 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 176/422 (42%), Positives = 245/422 (59%), Gaps = 15/422 (3%) Query 47 PPRPPTVKAGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLD 106 PP P + A + P+A GV +A+A A + LG+L G + D +TG LW Sbjct 396 PPSPSAATRQLQGPATSGTAPTANGVKSAVAPAAGNSALGQLTGSVIDPVTGTVLWDHGS 455 Query 107 DVPLVPASTNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQ 166 P+ PAST K+LT+AAALL+LD+ R+ST++V G G V+LVG GD TL++ P G Sbjct 456 STPVTPASTTKVLTSAAALLSLDQNLRLSTKIVQGAD--PGTVILVGGGDTTLTSLPLGT 513 Query 167 DT-WYHGAARIGDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAA 225 D+ Y G A + DLV Q++++ VQVD + F G T APGW+ D + + Sbjct 514 DSPLYPGGAHVDDLVAQVKKAAPGVKKVQVDLTLFKGATTAPGWEAGDAPSTYATQMSPV 573 Query 226 MIDAGRIQPTTVNSRRSRTPALDAGRELAKALG--LDPAAVTIASAPAGARQLAVVQSAP 283 M D GRI NS+R +AG LA + L +A A+AP A+ + V+SAP Sbjct 574 MADGGRINAKDNNSQR----IANAGSALASTIASKLGASAGGQATAPKDAKVVGEVKSAP 629 Query 284 LIQRLSQMMNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDS 343 L + +S +M SD+V+AE I R++A+A S++G A L D +G L D Sbjct 630 LTELVSDLMVLSDDVLAEAIARQIALANGEEASYAGGAKATIKVLKDHGFDVSGVVLSDG 689 Query 344 SGLSLDNRLTARTLDATMQAAAGPD--QPA---LRPLLDLLPIAGGSGTLGERFLDAATD 398 SG+S+ NR+ AR L + AAA P+ P LRP+L LP+AGGSGTL ++ DA Sbjct 690 SGISVQNRIPARLLTQLLAAAAAPEGKNPGTAKLRPVLAGLPVAGGSGTLADKRFDAPAS 749 Query 399 QGPAGWLRAKTGSLTAINSLVGVLTDRSGRVLTFAFISNEAGPN-GRNAMDALATKLWFC 457 Q GW+RAKTG+LT +N+L G++ D+ GRVL FAF+SN + + GR A+DALAT L C Sbjct 750 QAGRGWVRAKTGTLTGVNTLAGLVLDQDGRVLVFAFMSNGSDTDSGRAALDALATSLRKC 809 Query 458 GC 459 GC Sbjct 810 GC 811 >gi|258651088|ref|YP_003200244.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase [Nakamurella multipartita DSM 44233] gi|258554313|gb|ACV77255.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase [Nakamurella multipartita DSM 44233] Length=466 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 164/411 (40%), Positives = 226/411 (55%), Gaps = 9/411 (2%) Query 55 AGVVPVADTAATPSAAGVTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPAS 114 A + P+A + PS AG+ + LA A+P L + +G I D +G LW + P +PAS Sbjct 58 ARIAPMAISDKIPSTAGLESQLAAQFANPALAQFSGVIIDPESGTVLWNQNSTAPQLPAS 117 Query 115 TNKILTAAAALLTLDRQARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAA 174 T K+LT A L ++D ++ T+VV G Q +G +VLVG GD TLSA G DT Y GA Sbjct 118 TAKLLTGTALLTSVDPTSKFVTKVVKGDQ--EGDIVLVGGGDVTLSARADGVDTVYKGAP 175 Query 175 RIGDLVEQIRRSGVTPTAVQVDASAFSGPTMAPGWDPADID------NGDIAPIEAAMID 228 + DL Q+R SGV + +D ++GP +A GW DI G I + M+D Sbjct 176 LMSDLAAQVRASGVEVKRIVLDTDYWTGPDLADGWQTGDIRGTPTVAQGYITRMSPLMVD 235 Query 229 AGRIQPTTVNSRRSRTPALDAGRELAKALGLDPAAVTIASAPAGARQLAVVQSAPLIQRL 288 R P NS R+ PA AG+ LA+ +G + +AP A+ L V S P+ L Sbjct 236 GDREDPANENSIRTGDPATTAGKALARMIGQPDVTIVDGTAPEDAQVLGQVSSQPMSVLL 295 Query 289 SQMMNASDNVMAECIGREVAVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSL 348 +Q + SDNV+AE + R+VA+A P SF GA A+ L IDT G + D SGLS Sbjct 296 AQALENSDNVLAEALARQVAIARGAPPSFDGASAAMLEALEDLKIDTIGIEMYDGSGLST 355 Query 349 DNRLTARTLDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAK 408 +++ + + A D PALR LL +P+AG SG+L +R+ D A+ G AGW+RAK Sbjct 356 KDQVPPSVMGQVVALAVKGDPPALRNLLTGMPVAGVSGSLADRYQDDASRAG-AGWVRAK 414 Query 409 TGSLTAINSLVGVLTDRSGRVLTFAFISNEAGPNGRNAMDALATKLWFCGC 459 TGS+ +L G + D R+L FAF+SN R A+DALA L CGC Sbjct 415 TGSVQLTYALAGYVPDVDNRILVFAFVSNGVSSGTRPALDALAAGLRGCGC 465 >gi|336324740|ref|YP_004604706.1| D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase [Corynebacterium resistens DSM 45100] gi|336100722|gb|AEI08542.1| D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase [Corynebacterium resistens DSM 45100] Length=445 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 156/388 (41%), Positives = 226/388 (59%), Gaps = 16/388 (4%) Query 72 VTAALAVVAADPDLGKLAGRITDALTGQELWQRLDDVPLVPASTNKILTAAAALLTLDRQ 131 V +A+A A DP LGKL+ +TD TG+ LW PLVPAS+ K+LTAAAA+LTLD Sbjct 65 VKSAVAKAAKDPALGKLSAAVTDVRTGKILWSADPKRPLVPASSTKVLTAAAAVLTLDGD 124 Query 132 ARISTRVVAGGQNPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQIRR--SGVT 189 + +T+V+ G+ G + +V GD TL++ +Y ++ DL +Q++ +G Sbjct 125 QQQATKVLHDGK---GNLTIVSDGDVTLTSGKG--KAFYTQPGKVSDLAQQVKEKLNGQK 179 Query 190 PTAVQVDASAFSGPTMAPGWDPADIDNGDIAPIEAAMIDAGRIQPTTVNSRRSRTPALDA 249 T++ VD S G WD DI G++A ++A M+D RI+ T S RS +P D Sbjct 180 ITSITVDNSPREGDVFNSTWDRGDISMGNVANLDAVMLDGARIEATESYSPRSASPGADV 239 Query 250 GRELAKALGLDPAAVTIA--SAPAGARQLAVVQSAPLIQRLSQMMNASDNVMAECIGREV 307 ELAK +G A + + + Q+A V+SAPL RL MM SDN++AE IGR+V Sbjct 240 ATELAKQVGATEAKIKLTDDAVTEPGEQIAEVKSAPLDIRLRDMMVHSDNLLAESIGRQV 299 Query 308 AVAINRPQSFSGAVDAVTSRLNTAHIDTAGAALVDSSGLSLDNRLTARTLDATMQAAAGP 367 A A N+PQ+F+GA +A L + L D+SG+S NRLTA+TLD + Sbjct 300 AKAKNKPQTFAGATEATMDALREVGVTLDNCTLHDNSGMSDKNRLTAQTLDEVLA----- 354 Query 368 DQPALRPLLDLLPIAGGSGTLGERFLDAATDQGPAGWLRAKTGSLTAINSLVGVLTDRSG 427 RPLLD+LP++ GTL +R+ + + + AGW+RAKTG+L+ +++L G +T + G Sbjct 355 -NEKTRPLLDMLPVSSAEGTLEDRYGEGSGAEKAAGWVRAKTGTLSGVSALAGTITTQDG 413 Query 428 RVLTFAFISNEAGP-NGRNAMDALATKL 454 R LTFAF+SN + R A+D LA L Sbjct 414 RPLTFAFLSNGSDVGRARPALDKLAAAL 441 Lambda K H 0.316 0.130 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 967367738652 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40