BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3636
Length=115
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610772|ref|NP_218153.1| transposase [Mycobacterium tubercul... 222 1e-56
gi|148824840|ref|YP_001289594.1| transposase [Mycobacterium tube... 220 6e-56
gi|340628601|ref|YP_004747053.1| transposase [Mycobacterium cane... 207 6e-52
gi|340627022|ref|YP_004745474.1| ismt3 transposase a [Mycobacter... 206 8e-52
gi|15610080|ref|NP_217459.1| IS1533 transposase [Mycobacterium t... 159 2e-37
gi|167970042|ref|ZP_02552319.1| transposase [Mycobacterium tuber... 158 2e-37
gi|289751616|ref|ZP_06510994.1| transposase [Mycobacterium tuber... 157 3e-37
gi|289553267|ref|ZP_06442477.1| transposase [Mycobacterium tuber... 157 4e-37
gi|77454772|ref|YP_345640.1| putative transposase [Rhodococcus e... 140 7e-32
gi|291009897|ref|ZP_06567870.1| IS21 family transposase [Sacchar... 139 2e-31
gi|134102886|ref|YP_001108547.1| IS21 family transposase [Saccha... 139 2e-31
gi|134097029|ref|YP_001102690.1| transposase, ISlxx1-degenerated... 139 2e-31
gi|238059791|ref|ZP_04604500.1| integrase catalytic region [Micr... 139 2e-31
gi|134098341|ref|YP_001104002.1| transposase [Saccharopolyspora ... 139 2e-31
gi|134099159|ref|YP_001104820.1| IS21 family transposase [Saccha... 139 2e-31
gi|134098406|ref|YP_001104067.1| IS21 family transposase [Saccha... 138 2e-31
gi|134097351|ref|YP_001103012.1| transposase, ISlxx1-degenerated... 138 2e-31
gi|25777791|gb|AAN75599.1| ORFL4 [Saccharopolyspora erythraea NR... 138 3e-31
gi|29834089|ref|NP_828723.1| IS21 family transposase [Streptomyc... 138 3e-31
gi|334337226|ref|YP_004542378.1| Integrase catalytic region [Iso... 137 5e-31
gi|120401504|ref|YP_951333.1| integrase catalytic subunit [Mycob... 136 8e-31
gi|126434831|ref|YP_001070522.1| IS1533 transposase [Mycobacteri... 136 9e-31
gi|159038160|ref|YP_001537413.1| integrase catalytic protein [Sa... 133 1e-29
gi|332671375|ref|YP_004454383.1| integrase catalytic subunit [Ce... 132 1e-29
gi|330464901|ref|YP_004402644.1| integrase catalytic subunit [Ve... 132 2e-29
gi|159036672|ref|YP_001535925.1| integrase catalytic protein [Sa... 132 2e-29
gi|119952501|ref|YP_949926.1| IS21 family transposase IstA [Arth... 130 8e-29
gi|50955027|ref|YP_062315.1| transposase, ISlxx1-degenerated [Le... 125 3e-27
gi|258653210|ref|YP_003202366.1| Integrase catalytic subunit [Na... 124 5e-27
gi|296138753|ref|YP_003645996.1| integrase [Tsukamurella paurome... 122 2e-26
gi|315443019|ref|YP_004075898.1| transposase [Mycobacterium sp. ... 121 4e-26
gi|343928086|ref|ZP_08767549.1| putative transposase [Gordonia a... 121 4e-26
gi|269957362|ref|YP_003327151.1| Integrase catalytic region [Xyl... 118 3e-25
gi|288924487|ref|ZP_06418453.1| Integrase catalytic region [Fran... 116 1e-24
gi|288923893|ref|ZP_06417972.1| transposase [Frankia sp. EUN1f] ... 116 1e-24
gi|288922782|ref|ZP_06416950.1| hypothetical protein FrEUN1fDRAF... 114 4e-24
gi|33867201|ref|NP_898759.1| IS sequence [Rhodococcus erythropol... 112 2e-23
gi|197658997|emb|CAR47870.1| putative integrase, catalytic regio... 95.9 2e-18
gi|258653752|ref|YP_003202908.1| Integrase catalytic subunit [Na... 92.8 2e-17
gi|120404855|ref|YP_954684.1| integrase catalytic subunit [Mycob... 89.0 2e-16
gi|325962426|ref|YP_004240332.1| transposase [Arthrobacter phena... 77.4 6e-13
gi|290957648|ref|YP_003488830.1| hypothetical protein SCAB_31751... 75.5 2e-12
gi|226360785|ref|YP_002778563.1| LuxR family transcriptional reg... 72.0 2e-11
gi|328684933|gb|AEB33880.1| transposase [Mycobacterium sp. JS330] 66.2 2e-09
gi|111022376|ref|YP_705348.1| LuxR family transcriptional regula... 57.8 6e-07
gi|254820081|ref|ZP_05225082.1| transposase [Mycobacterium intra... 54.3 5e-06
gi|254039281|ref|ZP_04873325.1| LOW QUALITY PROTEIN: transposase... 47.8 6e-04
gi|170767917|ref|ZP_02902370.1| transposase [Escherichia alberti... 47.8 6e-04
gi|162420647|ref|YP_001605726.1| transposase [Yersinia pestis An... 47.4 7e-04
gi|170765908|ref|ZP_02900719.1| IS100 transposase orfA [Escheric... 47.4 7e-04
>gi|15610772|ref|NP_218153.1| transposase [Mycobacterium tuberculosis H37Rv]
gi|31794806|ref|NP_857299.1| putative transposase [Mycobacterium bovis AF2122/97]
gi|121639549|ref|YP_979773.1| putative transposase [Mycobacterium bovis BCG str. Pasteur 1173P2]
42 more sequence titles
Length=115
Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/115 (99%), Positives = 115/115 (100%), Gaps = 0/115 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+LSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE
Sbjct 1 MLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDICGR 115
PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDICGR
Sbjct 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDICGR 115
>gi|148824840|ref|YP_001289594.1| transposase [Mycobacterium tuberculosis F11]
gi|253800674|ref|YP_003033675.1| transposase [Mycobacterium tuberculosis KZN 1435]
gi|254552748|ref|ZP_05143195.1| transposase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
11 more sequence titles
Length=115
Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/115 (99%), Positives = 114/115 (99%), Gaps = 0/115 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+LSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE
Sbjct 1 MLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDICGR 115
PRIRELLA YPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDICGR
Sbjct 61 PRIRELLADYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDICGR 115
>gi|340628601|ref|YP_004747053.1| transposase [Mycobacterium canettii CIPT 140010059]
gi|340006791|emb|CCC45979.1| transposase [Mycobacterium canettii CIPT 140010059]
Length=411
Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 108/110 (99%), Positives = 109/110 (99%), Gaps = 0/110 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+LSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE
Sbjct 1 MLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
PRIRELLAAYPRMPATVIAERIGW YSIRTLSGRVRELRPLYLPPDPASR
Sbjct 61 PRIRELLAAYPRMPATVIAERIGWSYSIRTLSGRVRELRPLYLPPDPASR 110
>gi|340627022|ref|YP_004745474.1| ismt3 transposase a [Mycobacterium canettii CIPT 140010059]
gi|340005212|emb|CCC44365.1| ismt3 transposase a [Mycobacterium canettii CIPT 140010059]
Length=325
Score = 206 bits (524), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 108/110 (99%), Positives = 109/110 (99%), Gaps = 0/110 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+LSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE
Sbjct 1 MLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
PRIRELLAAYPRMPATVIAERIGW YSIRTLSGRVRELRPLYLPPDPASR
Sbjct 61 PRIRELLAAYPRMPATVIAERIGWSYSIRTLSGRVRELRPLYLPPDPASR 110
>gi|15610080|ref|NP_217459.1| IS1533 transposase [Mycobacterium tuberculosis H37Rv]
gi|15842491|ref|NP_337528.1| IS1533 transposase protein A [Mycobacterium tuberculosis CDC1551]
gi|31794120|ref|NP_856613.1| IS1533 transposase [Mycobacterium bovis AF2122/97]
71 more sequence titles
Length=413
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/110 (75%), Positives = 91/110 (83%), Gaps = 0/110 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+L+VEDWAEIRRL R+E LPI IARVL IS+NTVKSAL S+ PKY+RA +GS+ D E
Sbjct 1 MLTVEDWAEIRRLHRAEGLPIKMIARVLGISKNTVKSALESNQQPKYERAPQGSIVDAVE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
PRIRELL AYP MPATVIAERIGW SIR LS RV ELRP+YLPPDPASR
Sbjct 61 PRIRELLQAYPTMPATVIAERIGWERSIRVLSARVAELRPVYLPPDPASR 110
>gi|167970042|ref|ZP_02552319.1| transposase [Mycobacterium tuberculosis H37Ra]
Length=413
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/110 (75%), Positives = 91/110 (83%), Gaps = 0/110 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+L+VEDWAEIRRL R+E LPI IARVL IS+NTVKSAL S+ PKY+RA +GS+ D E
Sbjct 1 MLTVEDWAEIRRLHRAEGLPIKMIARVLGISKNTVKSALESNQQPKYERAPQGSIVDAVE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
PRIRELL AYP MPATVIAERIGW SIR LS RV ELRP+YLPPDPASR
Sbjct 61 PRIRELLQAYPTMPATVIAERIGWERSIRVLSARVAELRPVYLPPDPASR 110
>gi|289751616|ref|ZP_06510994.1| transposase [Mycobacterium tuberculosis T92]
gi|289692203|gb|EFD59632.1| transposase [Mycobacterium tuberculosis T92]
Length=344
Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/110 (75%), Positives = 91/110 (83%), Gaps = 0/110 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+L+VEDWAEIRRL R+E LPI IARVL IS+NTVKSAL S+ PKY+RA +GS+ D E
Sbjct 1 MLTVEDWAEIRRLHRAEGLPIKMIARVLGISKNTVKSALESNQQPKYERAPQGSIVDAVE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
PRIRELL AYP MPATVIAERIGW SIR LS RV ELRP+YLPPDPASR
Sbjct 61 PRIRELLQAYPTMPATVIAERIGWERSIRVLSARVAELRPVYLPPDPASR 110
>gi|289553267|ref|ZP_06442477.1| transposase [Mycobacterium tuberculosis KZN 605]
gi|289437899|gb|EFD20392.1| transposase [Mycobacterium tuberculosis KZN 605]
Length=412
Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/109 (75%), Positives = 90/109 (83%), Gaps = 0/109 (0%)
Query 2 LSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEP 61
++VEDWAEIRRL R+E LPI IARVL IS+NTVKSAL S+ PKY+RA +GS+ D EP
Sbjct 1 MTVEDWAEIRRLHRAEGLPIKMIARVLGISKNTVKSALESNQQPKYERAPQGSIVDAVEP 60
Query 62 RIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
RIRELL AYP MPATVIAERIGW SIR LS RV ELRP+YLPPDPASR
Sbjct 61 RIRELLQAYPTMPATVIAERIGWERSIRVLSARVAELRPVYLPPDPASR 109
>gi|77454772|ref|YP_345640.1| putative transposase [Rhodococcus erythropolis PR4]
gi|77019772|dbj|BAE46148.1| putative transposase [Rhodococcus erythropolis PR4]
Length=172
Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/112 (62%), Positives = 88/112 (79%), Gaps = 0/112 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
++SVEDWAEIRRL R+E L ISEIAR L ++RNTV+S LASD PPKY R + ++AD E
Sbjct 1 MISVEDWAEIRRLHRAESLSISEIARRLGVTRNTVRSPLASDRPPKYHRKRQRTLADAVE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDI 112
P++R LL+ +PRMPATVIAERIGW +SI T+ GR+RE+RP Y+ DP R +
Sbjct 61 PQVRALLSEFPRMPATVIAERIGWQHSITTIKGRIREIRPEYVGVDPVDRFV 112
>gi|291009897|ref|ZP_06567870.1| IS21 family transposase [Saccharopolyspora erythraea NRRL 2338]
Length=177
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/112 (61%), Positives = 85/112 (76%), Gaps = 0/112 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
++SVEDWAEIRRL R E +PI IAR L + RNTV+ AL+++GPP+Y+R AKGS+ D E
Sbjct 1 MISVEDWAEIRRLHRCEGMPIRAIARRLGVGRNTVRRALSAEGPPRYRRPAKGSIVDAVE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDI 112
P++R LLA +P MP VIAERIGW + L RVRELRPL+LPPDP SR +
Sbjct 61 PQVRALLAEWPTMPVPVIAERIGWQRGMTVLKDRVRELRPLFLPPDPVSRTV 112
>gi|134102886|ref|YP_001108547.1| IS21 family transposase [Saccharopolyspora erythraea NRRL 2338]
gi|133915509|emb|CAM05622.1| IS21 family transposase [Saccharopolyspora erythraea NRRL 2338]
Length=412
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/109 (64%), Positives = 81/109 (75%), Gaps = 0/109 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRL R E +PI I R L + RNTV+ ALAS+GPP+YQR +KGSV D EP+I
Sbjct 1 MEDWAEIRRLHRCEGMPIRAIVRKLGVGRNTVRRALASEGPPRYQRPSKGSVVDAVEPQI 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDI 112
R LLA +P MP VIAERIGW + L RVRELRPL+LPPDP SR +
Sbjct 61 RALLAEWPTMPVPVIAERIGWQRGLTVLKDRVRELRPLFLPPDPVSRTV 109
>gi|134097029|ref|YP_001102690.1| transposase, ISlxx1-degenerated [Saccharopolyspora erythraea
NRRL 2338]
gi|133909652|emb|CAL99764.1| transposase, ISlxx1-degenerated [Saccharopolyspora erythraea
NRRL 2338]
Length=277
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/109 (64%), Positives = 81/109 (75%), Gaps = 0/109 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRL R E +PI I R L + RNTV+ ALAS+GPP+YQR +KGSV D EP+I
Sbjct 1 MEDWAEIRRLHRCEGMPIRAIVRKLGVGRNTVRRALASEGPPRYQRPSKGSVVDAVEPQI 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDI 112
R LLA +P MP VIAERIGW + L RVRELRPL+LPPDP SR +
Sbjct 61 RALLAEWPTMPVPVIAERIGWQRGLTVLKDRVRELRPLFLPPDPVSRTV 109
>gi|238059791|ref|ZP_04604500.1| integrase catalytic region [Micromonospora sp. ATCC 39149]
gi|238059835|ref|ZP_04604544.1| integrase [Micromonospora sp. ATCC 39149]
gi|238061705|ref|ZP_04606414.1| integrase catalytic region [Micromonospora sp. ATCC 39149]
gi|238064038|ref|ZP_04608747.1| integrase catalytic region [Micromonospora sp. ATCC 39149]
gi|237881602|gb|EEP70430.1| integrase catalytic region [Micromonospora sp. ATCC 39149]
gi|237881646|gb|EEP70474.1| integrase [Micromonospora sp. ATCC 39149]
gi|237883516|gb|EEP72344.1| integrase catalytic region [Micromonospora sp. ATCC 39149]
gi|237885849|gb|EEP74677.1| integrase catalytic region [Micromonospora sp. ATCC 39149]
Length=408
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/110 (64%), Positives = 84/110 (77%), Gaps = 0/110 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+LS+E+WAEIRRL R+E +PI IAR L + RNTV+ ALA+ GPPKYQR AKGS+ D E
Sbjct 1 MLSMENWAEIRRLHRAEGMPIKVIARTLGVGRNTVRRALAAQGPPKYQRPAKGSIVDAVE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
P+IR LL +P MPATVIAERIGW S+ L RVR LRPL++ PDPA R
Sbjct 61 PQIRALLREWPSMPATVIAERIGWTRSLTVLKERVRLLRPLFMAPDPAQR 110
>gi|134098341|ref|YP_001104002.1| transposase [Saccharopolyspora erythraea NRRL 2338]
gi|133910964|emb|CAM01077.1| transposase [Saccharopolyspora erythraea NRRL 2338]
Length=337
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/109 (64%), Positives = 81/109 (75%), Gaps = 0/109 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRL R E +PI I R L + RNTV+ ALAS+GPP+YQR +KGSV D EP+I
Sbjct 1 MEDWAEIRRLHRCEGMPIRAIVRKLGVGRNTVRRALASEGPPRYQRPSKGSVVDAVEPQI 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDI 112
R LLA +P MP VIAERIGW + L RVRELRPL+LPPDP SR +
Sbjct 61 RALLAEWPTMPVPVIAERIGWLRGLTVLKDRVRELRPLFLPPDPVSRTV 109
>gi|134099159|ref|YP_001104820.1| IS21 family transposase [Saccharopolyspora erythraea NRRL 2338]
gi|133911782|emb|CAM01895.1| IS21 family transposase [Saccharopolyspora erythraea NRRL 2338]
Length=412
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/109 (63%), Positives = 81/109 (75%), Gaps = 0/109 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRL R E +PI I R L + RNTV+ ALAS+GPP+YQR +KGSV D EP++
Sbjct 1 MEDWAEIRRLHRCEGMPIRAIVRKLGVGRNTVRRALASEGPPRYQRPSKGSVVDAVEPQV 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDI 112
R LLA +P MP VIAERIGW + L RVRELRPL+LPPDP SR +
Sbjct 61 RALLAEWPTMPVPVIAERIGWQRGLTVLKDRVRELRPLFLPPDPVSRTV 109
>gi|134098406|ref|YP_001104067.1| IS21 family transposase [Saccharopolyspora erythraea NRRL 2338]
gi|133911029|emb|CAM01142.1| IS21 family transposase [Saccharopolyspora erythraea NRRL 2338]
Length=304
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/109 (64%), Positives = 81/109 (75%), Gaps = 0/109 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRL R E +PI I R L + RNTV+ ALAS+GPP+YQR +KGSV D EP+I
Sbjct 1 MEDWAEIRRLHRCEGMPIRAIVRKLGVGRNTVRRALASEGPPRYQRPSKGSVVDAVEPQI 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDI 112
R LLA +P MP VIAERIGW + L RVRELRPL+LPPDP SR +
Sbjct 61 RALLAEWPTMPVPVIAERIGWLRGLTVLKDRVRELRPLFLPPDPVSRTV 109
>gi|134097351|ref|YP_001103012.1| transposase, ISlxx1-degenerated [Saccharopolyspora erythraea
NRRL 2338]
gi|134101622|ref|YP_001107283.1| transposase [Saccharopolyspora erythraea NRRL 2338]
gi|133909974|emb|CAM00086.1| transposase, ISlxx1-degenerated [Saccharopolyspora erythraea
NRRL 2338]
gi|133914245|emb|CAM04358.1| transposase [Saccharopolyspora erythraea NRRL 2338]
Length=293
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/109 (64%), Positives = 81/109 (75%), Gaps = 0/109 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRL R E +PI I R L + RNTV+ ALAS+GPP+YQR +KGSV D EP+I
Sbjct 1 MEDWAEIRRLHRCEGMPIRAIVRKLGVGRNTVRRALASEGPPRYQRPSKGSVVDAVEPQI 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDI 112
R LLA +P MP VIAERIGW + L RVRELRPL+LPPDP SR +
Sbjct 61 RALLAEWPTMPVPVIAERIGWQRGLTVLKDRVRELRPLFLPPDPVSRTV 109
>gi|25777791|gb|AAN75599.1| ORFL4 [Saccharopolyspora erythraea NRRL 2338]
Length=293
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/109 (64%), Positives = 81/109 (75%), Gaps = 0/109 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRL R E +PI I R L + RNTV+ ALAS+GPP+YQR +KGSV D EP+I
Sbjct 1 MEDWAEIRRLHRCEGMPIRAIVRKLGVGRNTVRRALASEGPPRYQRPSKGSVVDAVEPQI 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDI 112
R LLA +P MP VIAERIGW + L RVRELRPL+LPPDP SR +
Sbjct 61 RALLAEWPTMPVPVIAERIGWQRGLTVLKDRVRELRPLFLPPDPVSRTV 109
>gi|29834089|ref|NP_828723.1| IS21 family transposase [Streptomyces avermitilis MA-4680]
gi|29611214|dbj|BAC75258.1| putative IS21 family ISMt3-like transposase [Streptomyces avermitilis
MA-4680]
Length=413
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/109 (64%), Positives = 83/109 (77%), Gaps = 0/109 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRL R+E++P+ IAR L I+RNTV+ A+A D PPKYQRA KGS+ D EP+I
Sbjct 1 MEDWAEIRRLHRAEQMPVRAIARKLGIARNTVRRAIADDAPPKYQRAPKGSIVDAVEPQI 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDI 112
RELL +P MPATVIAERIGW + L RVR+LRP Y P DPASR +
Sbjct 61 RELLEQWPEMPATVIAERIGWDRGLTVLKDRVRDLRPAYRPADPASRTV 109
>gi|334337226|ref|YP_004542378.1| Integrase catalytic region [Isoptericola variabilis 225]
gi|334107594|gb|AEG44484.1| Integrase catalytic region [Isoptericola variabilis 225]
Length=286
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/109 (65%), Positives = 83/109 (77%), Gaps = 0/109 (0%)
Query 2 LSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEP 61
++VEDWAEIRRL R E++ I IAR L +SRN V+ ALA D PP+Y+RA+KGS+ D EP
Sbjct 1 MTVEDWAEIRRLHRVEKMAIKAIARRLGVSRNAVRRALARDEPPRYERASKGSIVDAVEP 60
Query 62 RIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
IRELL P MPATVIAERIGW S+ L RVRE+RP YLPPDPA+R
Sbjct 61 AIRELLRKTPDMPATVIAERIGWTRSLTVLEDRVREIRPYYLPPDPATR 109
>gi|120401504|ref|YP_951333.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1]
gi|119954322|gb|ABM11327.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1]
Length=419
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/110 (66%), Positives = 80/110 (73%), Gaps = 0/110 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+LSVEDWAEIRRL R+E LPI IAR L ISRNTV++ALAS+GPPKY+R GS D E
Sbjct 1 MLSVEDWAEIRRLHRAEGLPIKMIARTLGISRNTVRAALASEGPPKYERKPAGSAVDAFE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
IR L P MPATVIAER+GW + S RVRELRP YLPPDPA R
Sbjct 61 DAIRVELKKTPTMPATVIAERVGWTRGMTVFSERVRELRPAYLPPDPAGR 110
>gi|126434831|ref|YP_001070522.1| IS1533 transposase [Mycobacterium sp. JLS]
gi|126234631|gb|ABN98031.1| IS1533 transposase [Mycobacterium sp. JLS]
Length=264
Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/110 (66%), Positives = 80/110 (73%), Gaps = 0/110 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+LSVEDWAEIRRL R+E LPI IAR L ISRNTV++ALAS+GPPKY+R GS D E
Sbjct 1 MLSVEDWAEIRRLHRAEGLPIKMIARTLGISRNTVRAALASEGPPKYERKPAGSAVDAFE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
IR L P MPATVIAER+GW + S RVRELRP YLPPDPA R
Sbjct 61 DAIRVELKKTPTMPATVIAERVGWTRGMTVFSERVRELRPAYLPPDPAGR 110
>gi|159038160|ref|YP_001537413.1| integrase catalytic protein [Salinispora arenicola CNS-205]
gi|157916995|gb|ABV98422.1| Integrase catalytic region [Salinispora arenicola CNS-205]
Length=408
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/110 (62%), Positives = 81/110 (74%), Gaps = 0/110 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+LSVEDWAEIRRLRRSE + I IAR L++SRNTVK ALASD PP+Y+R AKGS+ D E
Sbjct 1 MLSVEDWAEIRRLRRSEGMAIQAIARRLRMSRNTVKKALASDEPPRYRRVAKGSIVDAVE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
P+IR LLA +P MP TVI R+GW RV++LRPL+ PDPA R
Sbjct 61 PQIRALLAEFPEMPTTVIMVRVGWTRGKTVFCDRVQQLRPLFRRPDPAQR 110
>gi|332671375|ref|YP_004454383.1| integrase catalytic subunit [Cellulomonas fimi ATCC 484]
gi|332340413|gb|AEE46996.1| Integrase catalytic region [Cellulomonas fimi ATCC 484]
Length=407
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/109 (61%), Positives = 83/109 (77%), Gaps = 0/109 (0%)
Query 2 LSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEP 61
++VEDWAEIRRL R + + I IAR L +SRN V+ ALA D PP+Y+RAAKGS+ D+ +P
Sbjct 1 MTVEDWAEIRRLHRVDGMAIKAIARRLGVSRNAVRRALARDAPPRYERAAKGSLVDQVDP 60
Query 62 RIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
+R LLA+ P MPATVIA+RIGW +S+ L RVR LRP YL PDPA+R
Sbjct 61 VVRGLLASCPTMPATVIAQRIGWTHSLTILKDRVRVLRPYYLAPDPATR 109
>gi|330464901|ref|YP_004402644.1| integrase catalytic subunit [Verrucosispora maris AB-18-032]
gi|328807872|gb|AEB42044.1| integrase catalytic region [Verrucosispora maris AB-18-032]
Length=408
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 81/110 (74%), Gaps = 0/110 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+LSVEDWAEIRRL R+ER+ I I R L +SRNTV+ ALAS PP+YQRAAKGS+ D E
Sbjct 1 MLSVEDWAEIRRLHRAERMAIKAICRRLGVSRNTVRRALASHEPPRYQRAAKGSIVDAVE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
P+IR LLA +P MP TVI ER+GW + RV++LRPL+ PDP+ R
Sbjct 61 PQIRALLAEFPDMPTTVIMERVGWTRGKTVFADRVQQLRPLFRRPDPSQR 110
>gi|159036672|ref|YP_001535925.1| integrase catalytic protein [Salinispora arenicola CNS-205]
gi|159037222|ref|YP_001536475.1| integrase catalytic protein [Salinispora arenicola CNS-205]
gi|159037591|ref|YP_001536844.1| integrase catalytic protein [Salinispora arenicola CNS-205]
9 more sequence titles
Length=408
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 81/110 (74%), Gaps = 0/110 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+LSVEDWAEIRRL R+ER+ I I R L +SRNTV+ ALAS PP+YQRAAKGS+ D E
Sbjct 1 MLSVEDWAEIRRLHRAERMAIKAICRRLGVSRNTVRKALASHEPPRYQRAAKGSIVDAVE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
P+IR LLA +P MP TVI ER+GW + RV++LRPL+ PDP+ R
Sbjct 61 PQIRVLLAEFPDMPTTVIMERVGWTRGKTVFADRVQQLRPLFRRPDPSQR 110
>gi|119952501|ref|YP_949926.1| IS21 family transposase IstA [Arthrobacter aurescens TC1]
gi|119951631|gb|ABM10541.1| IS21 family element, transposase istA [Arthrobacter aurescens
TC1]
Length=417
Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/107 (64%), Positives = 77/107 (72%), Gaps = 0/107 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRLRR+E L I IA+ L ISRNTV++A+ASD PPKY+R GS D E I
Sbjct 1 MEDWAEIRRLRRAEGLGIKTIAKTLGISRNTVRAAIASDAPPKYRRRPAGSAVDAFEDAI 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
R+ LAA P MPATVIAER+GW I RV ELRP YLPPDPA R
Sbjct 61 RQQLAAVPTMPATVIAERVGWTRGITVFKERVAELRPAYLPPDPAGR 107
>gi|50955027|ref|YP_062315.1| transposase, ISlxx1-degenerated [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951509|gb|AAT89210.1| transposase, ISlxx1-degenerated [Leifsonia xyli subsp. xyli str.
CTCB07]
Length=355
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/110 (60%), Positives = 78/110 (71%), Gaps = 0/110 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+++VEDWAEIRRL +E LPI EI R L ISRNTV++AL SD PP+YQR GS+ D E
Sbjct 1 MIAVEDWAEIRRLYAAEGLPIKEIVRRLGISRNTVRAALRSDRPPEYQRPPAGSLVDPFE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
P+IR LLA +PRMP+TVIAER+GW +S RV LRP Y DP R
Sbjct 61 PQIRALLAQFPRMPSTVIAERVGWQHSASIFRARVSALRPEYQGVDPVQR 110
>gi|258653210|ref|YP_003202366.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
gi|258556435|gb|ACV79377.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=421
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/114 (58%), Positives = 78/114 (69%), Gaps = 0/114 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
+L V+DWAEIRRL R+E +PI IAR L S+NTVK ALA+ GPP+Y+RA GS D E
Sbjct 1 MLIVDDWAEIRRLHRAEGMPIRAIARRLGCSKNTVKRALAAQGPPRYERATVGSAVDAFE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDICG 114
P IR LLA +P MP +VI ER+GW RV LRPL++PPDPASR G
Sbjct 61 PAIRALLAEFPSMPTSVIMERVGWSRGRTVFFERVAVLRPLFVPPDPASRTEYG 114
>gi|296138753|ref|YP_003645996.1| integrase [Tsukamurella paurometabola DSM 20162]
gi|296026887|gb|ADG77657.1| Integrase catalytic region [Tsukamurella paurometabola DSM 20162]
Length=430
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/107 (59%), Positives = 80/107 (75%), Gaps = 0/107 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRL ++E +PI I+R L ++RNTV++ALASD PP+YQRA KGSV D EP+I
Sbjct 1 MEDWAEIRRLHQAEGMPIKVISRQLGVARNTVRAALASDRPPQYQRAPKGSVVDPYEPQI 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
R LL ++P MPA VIA+RIGW YS+ L R+ LRP Y DP+ R
Sbjct 61 RALLQSWPTMPAPVIAQRIGWPYSLSPLKKRLALLRPEYKGIDPSDR 107
>gi|315443019|ref|YP_004075898.1| transposase [Mycobacterium sp. Spyr1]
gi|315261322|gb|ADT98063.1| transposase [Mycobacterium sp. Spyr1]
Length=413
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/110 (58%), Positives = 76/110 (70%), Gaps = 0/110 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
++S+EDWA IR L RSE L IAR L I+R+TV ALA DGPPKY+RA+ S D E
Sbjct 1 MISLEDWALIRHLHRSEGLSQRAIARQLGIARDTVAGALACDGPPKYERASSPSAIDAVE 60
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
P IR LL+ YP++PATV+AER+GW SI RVR +RP YLP DP R
Sbjct 61 PGIRALLSTYPQLPATVLAERVGWTGSISWFRERVRAIRPEYLPADPVDR 110
>gi|343928086|ref|ZP_08767549.1| putative transposase [Gordonia alkanivorans NBRC 16433]
gi|343762002|dbj|GAA14475.1| putative transposase [Gordonia alkanivorans NBRC 16433]
Length=316
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/109 (60%), Positives = 77/109 (71%), Gaps = 0/109 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+E WAEIRRL RSE +PI EIAR L ++RNTV++ALASD P Y R +KGS D EP+I
Sbjct 1 MEQWAEIRRLHRSEGVPIKEIARRLGVARNTVRAALASDTAPSYSRPSKGSAVDAFEPQI 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDI 112
R LL YP MPATVIA+RIGW S+ L RVR +RP + DPA R I
Sbjct 61 RALLREYPTMPATVIAQRIGWSRSLTVLKDRVRVIRPEFRGVDPADRVI 109
>gi|269957362|ref|YP_003327151.1| Integrase catalytic region [Xylanimonas cellulosilytica DSM 15894]
gi|269306043|gb|ACZ31593.1| Integrase catalytic region [Xylanimonas cellulosilytica DSM 15894]
Length=428
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/107 (58%), Positives = 77/107 (72%), Gaps = 0/107 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRL RSE +PI IAR L ++RNTV++ALA+ PP+Y R AKGS+ DE E +
Sbjct 1 MEDWAEIRRLHRSEGVPIKAIARRLGVARNTVRAALAASDPPRYSRPAKGSLVDEVESLV 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
RE L P MPATVIA+RIGW S+ L R+R++RP Y DPA R
Sbjct 61 REQLRLDPTMPATVIAKRIGWTRSLTILKDRIRDIRPEYRGIDPADR 107
>gi|288924487|ref|ZP_06418453.1| Integrase catalytic region [Frankia sp. EUN1f]
gi|288344166|gb|EFC78729.1| Integrase catalytic region [Frankia sp. EUN1f]
Length=273
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/107 (57%), Positives = 77/107 (72%), Gaps = 0/107 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRL R+E + ISEI+R L I+RNTV+ AL SD PP+Y+RA + + D EP +
Sbjct 1 MEDWAEIRRLHRAEGVSISEISRRLGIARNTVRRALVSDRPPRYERAPRRRLTDAVEPAV 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
R LLA YPRMPA+VIA+RIGW +S L R+ ++RP Y DP R
Sbjct 61 RALLAEYPRMPASVIAQRIGWTHSSSILRDRISQIRPEYAGVDPVDR 107
>gi|288923893|ref|ZP_06417972.1| transposase [Frankia sp. EUN1f]
gi|288344749|gb|EFC79199.1| transposase [Frankia sp. EUN1f]
Length=121
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/107 (57%), Positives = 77/107 (72%), Gaps = 0/107 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRL R+E + ISEI+R L I+RNTV+ AL SD PP+Y+RA + + D EP +
Sbjct 1 MEDWAEIRRLHRAEGVSISEISRRLGIARNTVRRALVSDRPPRYERAPRRRLTDAVEPAV 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
R LLA YPRMPA+VIA+RIGW +S L R+ ++RP Y DP R
Sbjct 61 RALLAEYPRMPASVIAQRIGWTHSSSILRDRISQIRPEYAGVDPVDR 107
>gi|288922782|ref|ZP_06416950.1| hypothetical protein FrEUN1fDRAFT_6648 [Frankia sp. EUN1f]
gi|288345855|gb|EFC80216.1| hypothetical protein FrEUN1fDRAFT_6648 [Frankia sp. EUN1f]
Length=141
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/106 (56%), Positives = 76/106 (72%), Gaps = 0/106 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWAEIRRL R+E + ISEI+R L I+RNTV+ AL SD PP+Y+RA + + D EP +
Sbjct 1 MEDWAEIRRLHRAEGVSISEISRRLGIARNTVRRALVSDRPPRYERAPRRRLTDAVEPAV 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPAS 109
R LLA YPRMPA+VIA+RIGW +S L R+ ++RP Y DP
Sbjct 61 RALLAEYPRMPASVIAQRIGWTHSSSILRDRISQIRPEYAGVDPGG 106
>gi|33867201|ref|NP_898759.1| IS sequence [Rhodococcus erythropolis]
gi|33669035|gb|AAP74029.1| IS sequence [Rhodococcus erythropolis]
Length=253
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/107 (58%), Positives = 71/107 (67%), Gaps = 0/107 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWA IR L SE+L IA L I+R+TV +AL S+GPPKYQR + S EP+I
Sbjct 1 MEDWALIRHLYHSEKLSKRAIATKLGIARDTVTNALTSEGPPKYQRPSVDSAISAVEPKI 60
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
R LL +P MPATVIAERIGW SI L RVR +RP Y P DPA R
Sbjct 61 RALLTQHPTMPATVIAERIGWGGSISWLRERVRAIRPEYAPADPADR 107
>gi|197658997|emb|CAR47870.1| putative integrase, catalytic region [Rhodococcus sp. PY11]
Length=174
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/110 (50%), Positives = 67/110 (61%), Gaps = 1/110 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRA-AKGSVADEAEPR 62
+EDWA IR+L SE + + IAR L +SRNTV AL S PPKY+RA ++ S EP
Sbjct 1 MEDWALIRQLHNSEAMTQTAIARKLGLSRNTVAKALRSQAPPKYERARSQSSAWALTEPA 60
Query 63 IRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDI 112
R LLA YP MP TV+AER+GW + V +RP Y P DPA R +
Sbjct 61 ARTLLATYPAMPTTVLAERVGWSGGNSWFAENVARIRPEYQPADPADRLV 110
>gi|258653752|ref|YP_003202908.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
gi|258653842|ref|YP_003202998.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
gi|258556977|gb|ACV79919.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
gi|258557067|gb|ACV80009.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=407
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/109 (51%), Positives = 69/109 (64%), Gaps = 1/109 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRI 63
+EDWA IRRL ++ +P ++AR L I R TV ALASD PKY+R + EP +
Sbjct 1 MEDWALIRRLV-ADGVPQRQVARDLGIGRATVARALASDRQPKYERPVVPTSFTPFEPAV 59
Query 64 RELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDI 112
R+LLA P MPATVIAER+GW SI VR+LRP + P DP+ R I
Sbjct 60 RQLLATTPDMPATVIAERVGWTGSITWFRDNVRQLRPEHRPADPSDRLI 108
>gi|120404855|ref|YP_954684.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1]
gi|119957673|gb|ABM14678.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1]
Length=405
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/108 (46%), Positives = 66/108 (62%), Gaps = 1/108 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVA-DEAEPR 62
+EDWAEIRRL R E L + IAR L +SRNTV A+ ++ PP+Y+RA + A + E
Sbjct 1 MEDWAEIRRLYRFENLSPAAIARRLSLSRNTVAKAINAEAPPRYERAPSTTSAWAQVELA 60
Query 63 IRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
+R LL +P MPATV+A+R+GW + V +RP Y P P R
Sbjct 61 VRLLLGQFPTMPATVLAQRVGWTGGHSWFAENVTRIRPEYPPAGPCDR 108
>gi|325962426|ref|YP_004240332.1| transposase [Arthrobacter phenanthrenivorans Sphe3]
gi|325964153|ref|YP_004242059.1| transposase [Arthrobacter phenanthrenivorans Sphe3]
gi|325964799|ref|YP_004242705.1| transposase [Arthrobacter phenanthrenivorans Sphe3]
gi|323468513|gb|ADX72198.1| transposase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470240|gb|ADX73925.1| transposase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470886|gb|ADX74571.1| transposase [Arthrobacter phenanthrenivorans Sphe3]
Length=385
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/87 (51%), Positives = 53/87 (61%), Gaps = 0/87 (0%)
Query 24 IARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRIRELLAAYPRMPATVIAERIG 83
IA L ISRNTV A+++DGPP Y RA + S EP IR LL PR+PATV+AER+G
Sbjct 4 IAARLGISRNTVAKAVSADGPPTYVRAPQDSGIKTVEPAIRALLRENPRIPATVLAERVG 63
Query 84 WWYSIRTLSGRVRELRPLYLPPDPASR 110
W S V +RP + P DPA R
Sbjct 64 WSGSPAWFRENVARIRPEFAPADPADR 90
>gi|290957648|ref|YP_003488830.1| hypothetical protein SCAB_31751 [Streptomyces scabiei 87.22]
gi|260647174|emb|CBG70273.1| putative insertion element associated protein (fragment) [Streptomyces
scabiei 87.22]
Length=73
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/60 (64%), Positives = 46/60 (77%), Gaps = 0/60 (0%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
++ VEDWAEIRRL R+E++ + IAR L IS+NTVK ALASD PPK +R AKGSV D E
Sbjct 1 MICVEDWAEIRRLHRAEQMQVRAIARHLGISKNTVKRALASDRPPKCERPAKGSVVDAVE 60
>gi|226360785|ref|YP_002778563.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
gi|226239270|dbj|BAH49618.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
B4]
Length=889
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/98 (45%), Positives = 58/98 (60%), Gaps = 1/98 (1%)
Query 2 LSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEP 61
++ ++W EIRRL R + PI IA L +SRNTV+ AL D PP R+ +GSV D +
Sbjct 1 MNADEWDEIRRLHR-QGSPIKHIAVQLGMSRNTVRRALTFDQPPTDHRSRRGSVVDPVDS 59
Query 62 RIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELR 99
IREL+A P + IA RI W S TL+ RV +R
Sbjct 60 TIRELIADDPDITIVEIARRIQWDKSRTTLARRVTSIR 97
>gi|328684933|gb|AEB33880.1| transposase [Mycobacterium sp. JS330]
Length=339
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/38 (87%), Positives = 35/38 (93%), Gaps = 0/38 (0%)
Query 73 MPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASR 110
MPATVIAERI W YSIRTLS RVRELRP+YLPP+PASR
Sbjct 1 MPATVIAERIEWSYSIRTLSERVRELRPVYLPPNPASR 38
>gi|111022376|ref|YP_705348.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110821906|gb|ABG97190.1| possible transcriptional regulator, LuxR family protein [Rhodococcus
jostii RHA1]
Length=890
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/99 (40%), Positives = 53/99 (54%), Gaps = 1/99 (1%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAE 60
++ ++W EI LR+S IS IA LKISRNTV+ AL + PP+ R GS AD
Sbjct 9 TVNADEWREIVELRQSGE-SISGIATRLKISRNTVRRALEFEAPPQDHRPRSGSSADALR 67
Query 61 PRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELR 99
PRI L A P + + + W S TL+ VR ++
Sbjct 68 PRIAAALDADPDVTVAQLHRELEWSGSRNTLASAVRRIK 106
>gi|254820081|ref|ZP_05225082.1| transposase [Mycobacterium intracellulare ATCC 13950]
Length=240
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/49 (56%), Positives = 36/49 (74%), Gaps = 0/49 (0%)
Query 4 VEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAK 52
+EDWA IR L RSE L IAR L I+R+TV +A+AS GPPKY++ ++
Sbjct 1 MEDWALIRHLHRSEGLSQRAIARQLGIARDTVAAAVASHGPPKYEQDSR 49
>gi|254039281|ref|ZP_04873325.1| LOW QUALITY PROTEIN: transposase [Escherichia sp. 1_1_43]
gi|226838449|gb|EEH70484.1| LOW QUALITY PROTEIN: transposase [Escherichia sp. 1_1_43]
Length=250
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/105 (41%), Positives = 59/105 (57%), Gaps = 8/105 (7%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSAL-ASDGPPKYQ-RAAKGSVADE 58
+++ E EI+ L + + + IAR L ISRNTVK L A PPKY R A S+ DE
Sbjct 16 MVTFETVMEIKILHK-QGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDE 74
Query 59 AEPRIRELLA-AYP-RMPATVIAERI---GWWYSIRTLSGRVREL 98
IR+ +A A+P ++PATVIA I G+ + L G +R L
Sbjct 75 YRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRGFIRSL 119
>gi|170767917|ref|ZP_02902370.1| transposase [Escherichia albertii TW07627]
gi|170123405|gb|EDS92336.1| transposase [Escherichia albertii TW07627]
Length=178
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/105 (41%), Positives = 59/105 (57%), Gaps = 8/105 (7%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSAL-ASDGPPKYQ-RAAKGSVADE 58
+++ E EI+ L + + + IAR L ISRNTVK L A PPKY R A S+ DE
Sbjct 1 MVTFETVMEIKILHK-QGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDE 59
Query 59 AEPRIRELLA-AYP-RMPATVIAERI---GWWYSIRTLSGRVREL 98
IR+ +A A+P ++PATVIA I G+ + L G +R L
Sbjct 60 YRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRGFIRSL 104
>gi|162420647|ref|YP_001605726.1| transposase [Yersinia pestis Angola]
gi|162353462|gb|ABX87410.1| transposase [Yersinia pestis Angola]
Length=489
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/117 (40%), Positives = 64/117 (55%), Gaps = 11/117 (9%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSAL-ASDGPPKYQ-RAAKGSVADE 58
+++ E EI+ L + + + IAR L ISRNTVK L A PPKY R A S+ DE
Sbjct 1 MVTFETVMEIKILHK-QGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDE 59
Query 59 AEPRIRELLA-AYP-RMPATVIAERI---GWWYSIRTLSGRVRELRPLYLPPDPASR 110
IR+ +A A+P ++PATVIA I G+ + L +R L +P +PA R
Sbjct 60 YRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLS---VPQEPAVR 113
>gi|170765908|ref|ZP_02900719.1| IS100 transposase orfA [Escherichia albertii TW07627]
gi|170766144|ref|ZP_02900955.1| IS100 transposase orfA [Escherichia albertii TW07627]
gi|170125054|gb|EDS93985.1| IS100 transposase orfA [Escherichia albertii TW07627]
gi|170125290|gb|EDS94221.1| IS100 transposase orfA [Escherichia albertii TW07627]
Length=340
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/105 (41%), Positives = 59/105 (57%), Gaps = 8/105 (7%)
Query 1 VLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSAL-ASDGPPKYQ-RAAKGSVADE 58
+++ E EI+ L + + + IAR L ISRNTVK L A PPKY R A S+ DE
Sbjct 1 MVTFETVMEIKILHK-QGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDE 59
Query 59 AEPRIRELLA-AYP-RMPATVIAERI---GWWYSIRTLSGRVREL 98
IR+ +A A+P ++PATVIA I G+ + L G +R L
Sbjct 60 YRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRGFIRSL 104
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131043835296
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40