BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3639c

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610775|ref|NP_218156.1|  hypothetical protein Rv3639c [Mycob...   374    3e-102
gi|31794809|ref|NP_857302.1|  hypothetical protein Mb3663c [Mycob...   372    1e-101
gi|340628603|ref|YP_004747055.1|  hypothetical protein MCAN_36501...   371    3e-101
gi|31791882|ref|NP_854375.1|  hypothetical protein Mb0717 [Mycoba...  60.8    1e-07 
gi|298524190|ref|ZP_07011599.1|  conserved hypothetical protein [...  60.5    1e-07 
gi|15607838|ref|NP_215212.1|  hypothetical protein Rv0698 [Mycoba...  60.5    1e-07 
gi|289446257|ref|ZP_06436001.1|  conserved hypothetical protein [...  58.9    4e-07 
gi|289568046|ref|ZP_06448273.1|  conserved hypothetical protein [...  57.4    9e-07 
gi|340628813|ref|YP_004747265.1|  hypothetical protein MCAN_38631...  57.4    9e-07 
gi|298707651|emb|CBJ25968.1|  similar to Kelch-like 2, Mayven (Dr...  34.7    6.5   


>gi|15610775|ref|NP_218156.1| hypothetical protein Rv3639c [Mycobacterium tuberculosis H37Rv]
 gi|15843249|ref|NP_338286.1| hypothetical protein MT3741 [Mycobacterium tuberculosis CDC1551]
 gi|148663502|ref|YP_001285025.1| hypothetical protein MRA_3675 [Mycobacterium tuberculosis H37Ra]
 41 more sequence titles
 Length=188

 Score =  374 bits (960),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 188/188 (100%), Positives = 188/188 (100%), Gaps = 0/188 (0%)

Query  1    MAGLFTPPASGAATLQRAARDAAPDARWLLAVSDRNGIVSTSATTCNYPPAAKDSAQDGF  60
            MAGLFTPPASGAATLQRAARDAAPDARWLLAVSDRNGIVSTSATTCNYPPAAKDSAQDGF
Sbjct  1    MAGLFTPPASGAATLQRAARDAAPDARWLLAVSDRNGIVSTSATTCNYPPAAKDSAQDGF  60

Query  61   RHALAAAIAADIDEALRHGYGDLLELAYPLMSWPRRGVFGGPTPAPRGLATRQCPPRTVH  120
            RHALAAAIAADIDEALRHGYGDLLELAYPLMSWPRRGVFGGPTPAPRGLATRQCPPRTVH
Sbjct  61   RHALAAAIAADIDEALRHGYGDLLELAYPLMSWPRRGVFGGPTPAPRGLATRQCPPRTVH  120

Query  121  VDRVRPNGAERALRARFRPILRPQFTLGDGANGLPLAACTKTGAYVPHLPYSPIAVDPQP  180
            VDRVRPNGAERALRARFRPILRPQFTLGDGANGLPLAACTKTGAYVPHLPYSPIAVDPQP
Sbjct  121  VDRVRPNGAERALRARFRPILRPQFTLGDGANGLPLAACTKTGAYVPHLPYSPIAVDPQP  180

Query  181  SAGQQGPS  188
            SAGQQGPS
Sbjct  181  SAGQQGPS  188


>gi|31794809|ref|NP_857302.1| hypothetical protein Mb3663c [Mycobacterium bovis AF2122/97]
 gi|121639552|ref|YP_979776.1| hypothetical protein BCG_3697c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224992049|ref|YP_002646738.1| hypothetical protein JTY_3698 [Mycobacterium bovis BCG str. Tokyo 
172]
 8 more sequence titles
 Length=188

 Score =  372 bits (955),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 187/188 (99%), Positives = 187/188 (99%), Gaps = 0/188 (0%)

Query  1    MAGLFTPPASGAATLQRAARDAAPDARWLLAVSDRNGIVSTSATTCNYPPAAKDSAQDGF  60
            MAGLFTPPASGAATLQRAARDAAPDARWLLAVSDRNGIVSTSATTCNYPPAA DSAQDGF
Sbjct  1    MAGLFTPPASGAATLQRAARDAAPDARWLLAVSDRNGIVSTSATTCNYPPAANDSAQDGF  60

Query  61   RHALAAAIAADIDEALRHGYGDLLELAYPLMSWPRRGVFGGPTPAPRGLATRQCPPRTVH  120
            RHALAAAIAADIDEALRHGYGDLLELAYPLMSWPRRGVFGGPTPAPRGLATRQCPPRTVH
Sbjct  61   RHALAAAIAADIDEALRHGYGDLLELAYPLMSWPRRGVFGGPTPAPRGLATRQCPPRTVH  120

Query  121  VDRVRPNGAERALRARFRPILRPQFTLGDGANGLPLAACTKTGAYVPHLPYSPIAVDPQP  180
            VDRVRPNGAERALRARFRPILRPQFTLGDGANGLPLAACTKTGAYVPHLPYSPIAVDPQP
Sbjct  121  VDRVRPNGAERALRARFRPILRPQFTLGDGANGLPLAACTKTGAYVPHLPYSPIAVDPQP  180

Query  181  SAGQQGPS  188
            SAGQQGPS
Sbjct  181  SAGQQGPS  188


>gi|340628603|ref|YP_004747055.1| hypothetical protein MCAN_36501 [Mycobacterium canettii CIPT 
140010059]
 gi|340006793|emb|CCC45981.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=188

 Score =  371 bits (953),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 186/188 (99%), Positives = 186/188 (99%), Gaps = 0/188 (0%)

Query  1    MAGLFTPPASGAATLQRAARDAAPDARWLLAVSDRNGIVSTSATTCNYPPAAKDSAQDGF  60
            MAGLFTPPASGAATLQRAARDAAPDARWLLAVSDRNGIVSTSATTCNYPPAAKDSAQDGF
Sbjct  1    MAGLFTPPASGAATLQRAARDAAPDARWLLAVSDRNGIVSTSATTCNYPPAAKDSAQDGF  60

Query  61   RHALAAAIAADIDEALRHGYGDLLELAYPLMSWPRRGVFGGPTPAPRGLATRQCPPRTVH  120
            RHALAAAIAADIDEALRHGYGDLLELAYPLMSWPRRGVFGGPTPAPRGLATRQCPPRTVH
Sbjct  61   RHALAAAIAADIDEALRHGYGDLLELAYPLMSWPRRGVFGGPTPAPRGLATRQCPPRTVH  120

Query  121  VDRVRPNGAERALRARFRPILRPQFTLGDGANGLPLAACTKTGAYVPHLPYSPIAVDPQP  180
            VDRVRPNGAERALRARFRPILRPQFTLGDG NGLPLAACTKTGAYVPHLPYSPIAVDPQP
Sbjct  121  VDRVRPNGAERALRARFRPILRPQFTLGDGTNGLPLAACTKTGAYVPHLPYSPIAVDPQP  180

Query  181  SAGQQGPS  188
            SA QQGPS
Sbjct  181  SASQQGPS  188


>gi|31791882|ref|NP_854375.1| hypothetical protein Mb0717 [Mycobacterium bovis AF2122/97]
 gi|121636619|ref|YP_976842.1| hypothetical protein BCG_0747 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989091|ref|YP_002643778.1| hypothetical protein JTY_0717 [Mycobacterium bovis BCG str. Tokyo 
172]
 6 more sequence titles
 Length=109

 Score = 60.8 bits (146),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 32/45 (72%), Positives = 33/45 (74%), Gaps = 2/45 (4%)

Query  117  RTVHVDRVRPNGAERALRARFR--PILRPQFTLGDGANGLPLAAC  159
            R VHVDRVR  G ER LRA  +  PI RPQ TLGDGANGLPLA C
Sbjct  7    RRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVC  51


>gi|298524190|ref|ZP_07011599.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298493984|gb|EFI29278.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=203

 Score = 60.5 bits (145),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 32/45 (72%), Positives = 33/45 (74%), Gaps = 2/45 (4%)

Query  117  RTVHVDRVRPNGAERALRARFR--PILRPQFTLGDGANGLPLAAC  159
            R VHVDRVR  G ER LRA  +  PI RPQ TLGDGANGLPLA C
Sbjct  7    RRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVC  51


>gi|15607838|ref|NP_215212.1| hypothetical protein Rv0698 [Mycobacterium tuberculosis H37Rv]
 gi|148660473|ref|YP_001281996.1| hypothetical protein MRA_0706 [Mycobacterium tuberculosis H37Ra]
 gi|148821903|ref|YP_001286657.1| hypothetical protein TBFG_10712 [Mycobacterium tuberculosis F11]
 21 more sequence titles
 Length=203

 Score = 60.5 bits (145),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 32/45 (72%), Positives = 33/45 (74%), Gaps = 2/45 (4%)

Query  117  RTVHVDRVRPNGAERALRARFR--PILRPQFTLGDGANGLPLAAC  159
            R VHVDRVR  G ER LRA  +  PI RPQ TLGDGANGLPLA C
Sbjct  7    RRVHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVC  51


>gi|289446257|ref|ZP_06436001.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289568641|ref|ZP_06448868.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289573306|ref|ZP_06453533.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289419215|gb|EFD16416.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289537737|gb|EFD42315.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289542395|gb|EFD46043.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=101

 Score = 58.9 bits (141),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 30/43 (70%), Positives = 32/43 (75%), Gaps = 2/43 (4%)

Query  119  VHVDRVRPNGAERALRARFR--PILRPQFTLGDGANGLPLAAC  159
            +HVDRVR  G ER LRA  +  PI RPQ TLGDGANGLPLA C
Sbjct  1    MHVDRVRLTGTERELRAENQSPPIFRPQNTLGDGANGLPLAVC  43


>gi|289568046|ref|ZP_06448273.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289541799|gb|EFD45448.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=43

 Score = 57.4 bits (137),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 27/30 (90%), Positives = 28/30 (94%), Gaps = 0/30 (0%)

Query  133  LRARFRPILRPQFTLGDGANGLPLAACTKT  162
            +RARFRPILRPQFTLGDGANGLPLA  TKT
Sbjct  1    MRARFRPILRPQFTLGDGANGLPLAGRTKT  30


>gi|340628813|ref|YP_004747265.1| hypothetical protein MCAN_38631 [Mycobacterium canettii CIPT 
140010059]
 gi|340007003|emb|CCC46194.1| putative uncharacterized protein [Mycobacterium canettii CIPT 
140010059]
Length=119

 Score = 57.4 bits (137),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 32/55 (59%), Positives = 36/55 (66%), Gaps = 1/55 (1%)

Query  124  VRPNGAERALRARFRPILRPQFTLGDGANGLPL-AACTKTGAYVPHLPYSPIAVD  177
            +RPNGAER LRARFRPILRPQFTLG+GA+     AA  +       L Y  I VD
Sbjct  1    MRPNGAERELRARFRPILRPQFTLGEGADERRFTAADRRQRGGCRQLAYLAIRVD  55


>gi|298707651|emb|CBJ25968.1| similar to Kelch-like 2, Mayven (Drosophila), partial [Ectocarpus 
siliculosus]
Length=567

 Score = 34.7 bits (78),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 24/72 (34%), Positives = 38/72 (53%), Gaps = 8/72 (11%)

Query  29   LLAVSDRNGI-----VSTSATTCNYPPAAKDSAQDGFRHALAAAIAADI--DEALRHGYG  81
            LL+V+DR        V  + T   +P   +DS+ DGFRH L+AA+  ++  D+ L  G  
Sbjct  262  LLSVADRYDCHRLRRVILAYTLERFPTTCRDSSSDGFRH-LSAALVVEVLKDDRLAAGQE  320

Query  82   DLLELAYPLMSW  93
              L + +  +SW
Sbjct  321  GELAVFWAAISW  332



Lambda     K      H
   0.319    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 183812957610


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40