BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3641c
Length=211
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610777|ref|NP_218158.1| cell filamentation protein FIC [Myc... 432 1e-119
gi|289445235|ref|ZP_06434979.1| cell filamentation protein fic [... 431 4e-119
gi|120404612|ref|YP_954441.1| filamentation induced by cAMP prot... 342 2e-92
gi|119855146|ref|YP_935751.1| filamentation induced by cAMP prot... 298 4e-79
gi|46205051|ref|ZP_00049110.2| COG2184: Protein involved in cell... 141 7e-32
gi|314927718|gb|EFS91549.1| toxin-antitoxin system, toxin compon... 123 2e-26
gi|260557399|ref|ZP_05829614.1| cell filamentation protein Fic [... 115 4e-24
gi|296454296|ref|YP_003661439.1| filamentation induced by cAMP p... 113 2e-23
gi|296112174|ref|YP_003622585.1| putative Cell filamentation pro... 112 4e-23
gi|291457788|ref|ZP_06597178.1| toxin-antitoxin system, toxin co... 110 2e-22
gi|213691871|ref|YP_002322457.1| filamentation induced by cAMP p... 108 4e-22
gi|225352309|ref|ZP_03743332.1| hypothetical protein BIFPSEUDO_0... 108 4e-22
gi|313140517|ref|ZP_07802710.1| conserved hypothetical protein [... 108 5e-22
gi|310287723|ref|YP_003938981.1| Fic domain [Bifidobacterium bif... 108 7e-22
gi|121582545|ref|YP_974077.1| filamentation induced by cAMP prot... 107 8e-22
gi|309783324|ref|ZP_07678034.1| Fic protein [Ralstonia sp. 5_7_4... 107 8e-22
gi|262369033|ref|ZP_06062362.1| cell filamentation protein [Acin... 106 2e-21
gi|262374376|ref|ZP_06067651.1| cell filamentation protein fic [... 105 4e-21
gi|283457206|ref|YP_003361776.1| hypothetical protein RMDY18_012... 105 5e-21
gi|152972255|ref|YP_001337401.1| cell filamentation protein Fic ... 104 7e-21
gi|238896844|ref|YP_002921589.1| cell filamentation protein Fic ... 104 7e-21
gi|157148945|ref|YP_001456264.1| cell filamentation protein Fic ... 104 1e-20
gi|295798223|emb|CAZ15864.1| probable fic-family protein [Xantho... 104 1e-20
gi|322831013|ref|YP_004211040.1| filamentation induced by cAMP p... 103 1e-20
gi|290512041|ref|ZP_06551409.1| cell filamentation protein [Kleb... 103 2e-20
gi|327395540|dbj|BAK12962.1| cell filamentation protein Fic [Pan... 103 2e-20
gi|291619210|ref|YP_003521952.1| Fic [Pantoea ananatis LMG 20103... 103 2e-20
gi|330808536|ref|YP_004352998.1| Cell filamentation protein [Pse... 103 2e-20
gi|206575851|ref|YP_002236252.1| cell filamentation protein Fic ... 102 3e-20
gi|330836733|ref|YP_004411374.1| filamentation induced by cAMP p... 102 4e-20
gi|323484997|ref|ZP_08090351.1| filamentation induced by cAMP pr... 102 5e-20
gi|317152131|ref|YP_004120179.1| filamentation induced by cAMP p... 101 9e-20
gi|317049872|ref|YP_004117520.1| filamentation induced by cAMP p... 101 9e-20
gi|330964433|gb|EGH64693.1| cell filamentation protein Fic [Pseu... 100 1e-19
gi|290791092|gb|ADD63317.1| hypothetical protein [uncultured bac... 100 2e-19
gi|312958377|ref|ZP_07772898.1| filamentation induced by cAMP pr... 100 2e-19
gi|229587835|ref|YP_002869954.1| cell filamentation protein [Pse... 100 2e-19
gi|45368549|ref|NP_990877.1| hypothetical protein pEST4011_02 [A... 100 2e-19
gi|308188392|ref|YP_003932523.1| cell filamentation protein fic ... 100 2e-19
gi|317152212|ref|YP_004120260.1| filamentation induced by cAMP p... 100 2e-19
gi|298487942|ref|ZP_07005981.1| Cell filamentation protein fic [... 99.8 3e-19
gi|304397798|ref|ZP_07379674.1| filamentation induced by cAMP pr... 99.4 3e-19
gi|297194698|ref|ZP_06912096.1| filamentation induced by cAMP pr... 99.4 3e-19
gi|327309921|ref|YP_004336819.1| filamentation induced by cAMP p... 99.0 4e-19
gi|330892404|gb|EGH25065.1| filamentation induced by cAMP protei... 99.0 5e-19
gi|70728393|ref|YP_258142.1| cell filamentation protein Fic [Pse... 98.6 5e-19
gi|311106514|ref|YP_003979367.1| Fic family protein 2 [Achromoba... 98.2 6e-19
gi|283835769|ref|ZP_06355510.1| toxin-antitoxin system, toxin co... 98.2 7e-19
gi|312128942|ref|YP_003996282.1| filamentation induced by camp p... 97.8 1e-18
gi|322513491|ref|ZP_08066601.1| filamentation induced by cAMP pr... 97.8 1e-18
>gi|15610777|ref|NP_218158.1| cell filamentation protein FIC [Mycobacterium tuberculosis H37Rv]
gi|15843251|ref|NP_338288.1| cell filamentation protein, putative [Mycobacterium tuberculosis
CDC1551]
gi|31794811|ref|NP_857304.1| cell filamentation protein FIC [Mycobacterium bovis AF2122/97]
76 more sequence titles
Length=211
Score = 432 bits (1111), Expect = 1e-119, Method: Compositional matrix adjust.
Identities = 210/211 (99%), Positives = 211/211 (100%), Gaps = 0/211 (0%)
Query 1 VPHPWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLG 60
+PHPWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLG
Sbjct 1 MPHPWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLG 60
Query 61 DRTDLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDR 120
DRTDLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDR
Sbjct 61 DRTDLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDR 120
Query 121 LRAVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELH 180
LRAVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELH
Sbjct 121 LRAVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELH 180
Query 181 GACHVARANSDLTGLVAMFKGILDAEPTYDF 211
GACHVARANSDLTGLVAMFKGILDAEPTYDF
Sbjct 181 GACHVARANSDLTGLVAMFKGILDAEPTYDF 211
>gi|289445235|ref|ZP_06434979.1| cell filamentation protein fic [Mycobacterium tuberculosis CPHL_A]
gi|289418193|gb|EFD15394.1| cell filamentation protein fic [Mycobacterium tuberculosis CPHL_A]
Length=211
Score = 431 bits (1107), Expect = 4e-119, Method: Compositional matrix adjust.
Identities = 209/211 (99%), Positives = 211/211 (100%), Gaps = 0/211 (0%)
Query 1 VPHPWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLG 60
+PHPWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAEN+LVEARVIELREDPNLLG
Sbjct 1 MPHPWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENNLVEARVIELREDPNLLG 60
Query 61 DRTDLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDR 120
DRTDLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDR
Sbjct 61 DRTDLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDR 120
Query 121 LRAVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELH 180
LRAVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELH
Sbjct 121 LRAVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELH 180
Query 181 GACHVARANSDLTGLVAMFKGILDAEPTYDF 211
GACHVARANSDLTGLVAMFKGILDAEPTYDF
Sbjct 181 GACHVARANSDLTGLVAMFKGILDAEPTYDF 211
>gi|120404612|ref|YP_954441.1| filamentation induced by cAMP protein Fic [Mycobacterium vanbaalenii
PYR-1]
gi|119957430|gb|ABM14435.1| filamentation induced by cAMP protein Fic [Mycobacterium vanbaalenii
PYR-1]
Length=212
Score = 342 bits (877), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 166/212 (79%), Positives = 182/212 (86%), Gaps = 1/212 (0%)
Query 1 VPHPWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLG 60
+PHPWDTGD ERNWQGYFIP+ VLRNRVGA T LRDAENDLVEARVIELRE P+LLG
Sbjct 1 MPHPWDTGDLERNWQGYFIPSTGVLRNRVGATTLPALRDAENDLVEARVIELREAPDLLG 60
Query 61 DRT-DLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLD 119
DR+ DLAYLR IHRQLFQD+Y WAGD+RTVGIEK DESFC PG IS+PM+HVAAEI +L+
Sbjct 61 DRSYDLAYLRVIHRQLFQDVYDWAGDVRTVGIEKGDESFCPPGSISQPMDHVAAEISRLE 120
Query 120 RLRAVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEEL 179
+L+AV E DLA VAY YDY N+AHPFREGNGRSTREFFDLLLSERG+GLDW KTDL EL
Sbjct 121 QLKAVTEADLARTVAYLYDYANFAHPFREGNGRSTREFFDLLLSERGAGLDWNKTDLAEL 180
Query 180 HGACHVARANSDLTGLVAMFKGILDAEPTYDF 211
H ACH ARA SDL GL+AMF ILDA+P YDF
Sbjct 181 HSACHAARAQSDLGGLIAMFAKILDADPAYDF 212
>gi|119855146|ref|YP_935751.1| filamentation induced by cAMP protein Fic [Mycobacterium sp.
KMS]
gi|119697864|gb|ABL94936.1| filamentation induced by cAMP protein Fic [Mycobacterium sp.
KMS]
Length=225
Score = 298 bits (762), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/211 (69%), Positives = 167/211 (80%), Gaps = 1/211 (0%)
Query 2 PHPWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGD 61
PHPW++GD ++ W+GYFIP VL+NRVGA T LRDAENDLVE+R+IELRE LLGD
Sbjct 15 PHPWESGDFDQRWRGYFIPGTEVLQNRVGAATTEALRDAENDLVESRIIELRESAILLGD 74
Query 62 RT-DLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDR 120
R DLA+L+AIHRQLFQD+Y WAGD+RTVG+EK ESFC PG I++ M+HVA+EI + +R
Sbjct 75 RGYDLAFLQAIHRQLFQDVYDWAGDVRTVGLEKGQESFCPPGNIAQAMDHVASEISEHER 134
Query 121 LRAVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELH 180
L V L VAY YDYVN AHPFREGNGR+TREFFDLLLSERG GLDW +TD ELH
Sbjct 135 LLTVAADALPRTVAYLYDYVNIAHPFREGNGRATREFFDLLLSERGVGLDWQQTDSAELH 194
Query 181 GACHVARANSDLTGLVAMFKGILDAEPTYDF 211
ACH ARANSDL GL+ MF GILD EP YDF
Sbjct 195 AACHAARANSDLRGLIQMFDGILDDEPAYDF 225
>gi|46205051|ref|ZP_00049110.2| COG2184: Protein involved in cell division [Magnetospirillum
magnetotacticum MS-1]
Length=181
Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/174 (46%), Positives = 104/174 (60%), Gaps = 3/174 (1%)
Query 4 PWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRT 63
PW+TGD W GY + LRN VGART +LR AE+ LVEAR + LRE + L D
Sbjct 4 PWETGDEYARWDGYLLEDKRTLRNLVGARTPEQLRRAEDHLVEARALTLRE--HGLPDSY 61
Query 64 DLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAP-GGISRPMEHVAAEIYQLDRLR 122
L LRAIHR LFQD+Y WAG++RTV I K + + AP I+ M+ V +I + + LR
Sbjct 62 GLDGLRAIHRHLFQDVYEWAGEVRTVSIRKGRDGWFAPLDRIAPTMQAVGEQIARTENLR 121
Query 123 AVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDL 176
+ + G +A Y+ N AHPFREGNGR+ RE+ L E G +DW + +
Sbjct 122 GIDPERIPGTLAQVYNLANQAHPFREGNGRTQREYITALARESGHHVDWTRVTV 175
>gi|314927718|gb|EFS91549.1| toxin-antitoxin system, toxin component, Fic family [Propionibacterium
acnes HL044PA1]
Length=264
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 102/195 (53%), Gaps = 15/195 (7%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y P +LRN+VGA+T L +AE DL AR+++L + P + DL LRAIHR LF
Sbjct 10 YLDPETGLLRNKVGAQTKVALDEAEGDLSFARLVQLMDHP--VKPTGDLDELRAIHRHLF 67
Query 77 QDIYVWAGDLRTVGIEKEDES---FCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQV 133
QD+Y WAG+LRTV I K E F I R + E+ LR + ++
Sbjct 68 QDVYDWAGELRTVDIRKNVEGAQFFLPVSMIGRAAGYAEGELRADHELRGMSREQFIDRL 127
Query 134 AYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACH-----VARA 188
AY YD NY HPFREGNGR+ R F++ + + G LDW E+HGA + A
Sbjct 128 AYHYDQFNYVHPFREGNGRTQRVFWNRVARDAGWQLDW-----REVHGATNDQASRAASE 182
Query 189 NSDLTGLVAMFKGIL 203
D L MF I+
Sbjct 183 QQDFGPLREMFDQIV 197
>gi|260557399|ref|ZP_05829614.1| cell filamentation protein Fic [Acinetobacter baumannii ATCC
19606]
gi|260409025|gb|EEX02328.1| cell filamentation protein Fic [Acinetobacter baumannii ATCC
19606]
Length=198
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/189 (36%), Positives = 101/189 (54%), Gaps = 8/189 (4%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVE--ARVIELREDPNLLGDRTDLAYLRAIHRQ 74
Y P VL+N++ + L+ AE +L E + IE E P DL YL++IH Q
Sbjct 12 YCYPDSDVLKNKLNIQDAEILQQAELELTEYASTRIEYAEPP------YDLKYLQSIHFQ 65
Query 75 LFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVA 134
LF D+Y WAG+LR V I K D FC I + ++ Q + + + + L ++A
Sbjct 66 LFSDLYAWAGELRQVDIAKGDTRFCTFPRIEIEANKLFKQLEQQNYFQGLAKPALIQKIA 125
Query 135 YRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTG 194
Y VN HPFREGNGR+ R FF+ LL+ G G+ W K + +E+ ++ N L G
Sbjct 126 DFYCEVNVIHPFREGNGRTQRIFFEHLLAHCGYGVQWSKINNKEVWIQANIDGFNCRLDG 185
Query 195 LVAMFKGIL 203
L+A+F+ +
Sbjct 186 LIAIFEACI 194
>gi|296454296|ref|YP_003661439.1| filamentation induced by cAMP protein Fic [Bifidobacterium longum
subsp. longum JDM301]
gi|296183727|gb|ADH00609.1| filamentation induced by cAMP protein Fic [Bifidobacterium longum
subsp. longum JDM301]
Length=255
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/199 (38%), Positives = 103/199 (52%), Gaps = 5/199 (2%)
Query 12 RNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAI 71
R + Y IP +VLRN VGA L AENDL AR LRED L L LR I
Sbjct 3 RVFDPYLIPGTNVLRNFVGATDEDALAAAENDLCSARAAILRED--LPPAEGTLEQLRRI 60
Query 72 HRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDR-LRAVGEGDLA 130
HR LFQD+Y WAG++R + + K + P + H + E+ + D L+ +G G+
Sbjct 61 HRFLFQDVYDWAGEIRAIDMGKGEGLPFQPLELFSIGVHYSEEVLRGDDFLKGLGRGEFV 120
Query 131 GQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANS 190
+++ Y+ N HPFREGNGR+ R F++++ E G DWG D A +
Sbjct 121 KRLSVSYNNFNILHPFREGNGRTQRIFWEIIAREAGWHFDWGLIDKRTNDQASIAGMQRN 180
Query 191 DLTGLVAMFKGILD--AEP 207
DL L MF+ I+ +EP
Sbjct 181 DLRPLEDMFRRIVKPLSEP 199
>gi|296112174|ref|YP_003622585.1| putative Cell filamentation protein fic [Thiomonas sp. 3As]
gi|294341986|emb|CAZ90414.1| putative Cell filamentation protein fic [Thiomonas sp. 3As]
Length=297
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/182 (37%), Positives = 97/182 (54%), Gaps = 27/182 (14%)
Query 4 PWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRT 63
P+DT W+ YFIP L+N++G R AELR E ++ E R+ E+ ++P +
Sbjct 9 PFDT------WESYFIPGTQTLKNKLGIRDAAELRSEEYEITERRLREIEQNP--VSGNY 60
Query 64 DLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRA 123
DL +L+AIH+ +FQD+Y WAG +R+VGI K + F P E++ +E +L RA
Sbjct 61 DLDHLKAIHKHIFQDVYEWAGQIRSVGIAKGNSEFARP-------EYIESEGKKLS--RA 111
Query 124 VGEGDLAGQVAYRYDYV----------NYAHPFREGNGRSTREFFDLLLSERGSGLDWGK 173
+ E Q + +V N HPFREGNGRSTR F + + G LD +
Sbjct 112 LAEDKDINQPPDKRAFVERLADHYSDWNALHPFREGNGRSTRVFMESVARRAGYSLDQRR 171
Query 174 TD 175
D
Sbjct 172 ID 173
>gi|291457788|ref|ZP_06597178.1| toxin-antitoxin system, toxin component, Fic family [Bifidobacterium
breve DSM 20213]
gi|291380841|gb|EFE88359.1| toxin-antitoxin system, toxin component, Fic family [Bifidobacterium
breve DSM 20213]
Length=256
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/199 (37%), Positives = 102/199 (52%), Gaps = 5/199 (2%)
Query 12 RNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAI 71
R + Y IP +VLRN VG L AENDL AR LRE NL L LR I
Sbjct 4 RVFDPYLIPGTNVLRNLVGVTDEDALAAAENDLCSARAAILRE--NLPPAEGTLEQLRRI 61
Query 72 HRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLD-RLRAVGEGDLA 130
HR LF+D+Y WAG++RT+ + K + P + H + E+ + D L+ +G +
Sbjct 62 HRFLFRDVYDWAGEVRTIDMGKGEGLPFQPLELFSIGVHYSEEVLRADDLLKGLGHDEFV 121
Query 131 GQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANS 190
+++ Y+ N HPFREGNGR+ R F++++ E G DWG D A +
Sbjct 122 KRLSVSYNNFNILHPFREGNGRTQRIFWEIIAREAGWHFDWGLIDKRTNDQASIAGMQRN 181
Query 191 DLTGLVAMFKGILD--AEP 207
DL L MF+ I+ +EP
Sbjct 182 DLRPLEDMFRRIVKPLSEP 200
>gi|213691871|ref|YP_002322457.1| filamentation induced by cAMP protein Fic [Bifidobacterium longum
subsp. infantis ATCC 15697]
gi|213523332|gb|ACJ52079.1| filamentation induced by cAMP protein Fic [Bifidobacterium longum
subsp. infantis ATCC 15697]
gi|320457971|dbj|BAJ68592.1| cell filamentation protein [Bifidobacterium longum subsp. infantis
ATCC 15697]
Length=255
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/193 (38%), Positives = 97/193 (51%), Gaps = 3/193 (1%)
Query 12 RNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAI 71
R + Y IP +VLRN VGA L AENDL AR LRE NL L LR I
Sbjct 3 RVFDPYLIPGTNVLRNLVGATDKDALAAAENDLCSARAAILRE--NLPPAEGTLEQLRRI 60
Query 72 HRQLFQDIYVWAGDLRTVGIEK-EDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLA 130
HR LFQD+Y WAG++RT+ + K E F S + + + D L+ +G +
Sbjct 61 HRFLFQDVYDWAGEIRTIDMGKGEGLPFQPLELFSIGVHYSEGVLRGDDLLKGLGHEEFV 120
Query 131 GQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANS 190
+++ Y+ N HPFREGNGR+ R F++++ E G DWG D A +
Sbjct 121 KRLSVSYNNFNILHPFREGNGRTQRIFWEIIAREAGWHFDWGLIDKRTNDQASIAGMQRN 180
Query 191 DLTGLVAMFKGIL 203
DL L MF I+
Sbjct 181 DLRPLEDMFGRIV 193
>gi|225352309|ref|ZP_03743332.1| hypothetical protein BIFPSEUDO_03925 [Bifidobacterium pseudocatenulatum
DSM 20438]
gi|225157556|gb|EEG70895.1| hypothetical protein BIFPSEUDO_03925 [Bifidobacterium pseudocatenulatum
DSM 20438]
Length=255
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/193 (38%), Positives = 97/193 (51%), Gaps = 3/193 (1%)
Query 12 RNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAI 71
R + Y IP +VLRN VGA L AENDL AR LRE NL L LR I
Sbjct 3 RVFDPYLIPGTNVLRNLVGATDKDALAAAENDLCSARAAILRE--NLPPAEGTLEQLRRI 60
Query 72 HRQLFQDIYVWAGDLRTVGIEK-EDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLA 130
HR LFQD+Y WAG++RT+ + K E F S + + + D + +G +
Sbjct 61 HRFLFQDVYDWAGEIRTIDMGKGEGLPFQPLELFSIGVRYSEGVLRGDDLFKGLGHEEFV 120
Query 131 GQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANS 190
+++ Y+ N HPFREGNGR+ R F++++ E G DWG D A +
Sbjct 121 KRLSVSYNNFNILHPFREGNGRTQRIFWEIIAREAGWHFDWGLIDKRTNDQASIAGMQRN 180
Query 191 DLTGLVAMFKGIL 203
DL L MF+ I+
Sbjct 181 DLRPLEDMFRRIV 193
>gi|313140517|ref|ZP_07802710.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313133027|gb|EFR50644.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length=254
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/199 (37%), Positives = 102/199 (52%), Gaps = 5/199 (2%)
Query 12 RNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAI 71
R + Y IP +VLRN VGA L AENDL AR LRE NL L LR I
Sbjct 2 RVFDPYLIPGTNVLRNLVGATDEDALAAAENDLCSARAAILRE--NLPPAEGTLEQLRRI 59
Query 72 HRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLD-RLRAVGEGDLA 130
HR LF+D+Y WAG++RT+ + K + P + + E+ + D L+ +G +
Sbjct 60 HRFLFRDVYDWAGEVRTIDMGKGEGLPFQPLELFSIGVRYSEEVLRADDLLKGLGHDEFV 119
Query 131 GQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANS 190
+++ Y+ N HPFREGNGR+ R F++++ E G DWG D A +
Sbjct 120 KRLSVSYNNFNILHPFREGNGRTQRIFWEIIAREAGWHFDWGLIDKRTNDQASIAGMQRN 179
Query 191 DLTGLVAMFKGILD--AEP 207
DL L MF+ I+ +EP
Sbjct 180 DLRPLEDMFRRIVKPLSEP 198
>gi|310287723|ref|YP_003938981.1| Fic domain [Bifidobacterium bifidum S17]
gi|309251659|gb|ADO53407.1| conserved hypothetical protein with Fic domain [Bifidobacterium
bifidum S17]
Length=256
Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/199 (37%), Positives = 102/199 (52%), Gaps = 5/199 (2%)
Query 12 RNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAI 71
R + Y IP +VLRN VGA L AENDL AR LRED L L LR +
Sbjct 4 RVFDPYLIPGTNVLRNLVGATDEDALAAAENDLCSARAAILRED--LPSAEGTLGQLRRM 61
Query 72 HRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLD-RLRAVGEGDLA 130
HR LF+D+Y WAG++RT+ + K + P + + E+ + D L+ +G +
Sbjct 62 HRFLFRDVYDWAGEVRTIDMGKGEGLPFQPLELFSIGVRYSEEVLRADDLLKGLGHDEFV 121
Query 131 GQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANS 190
+++ Y+ N HPFREGNGR+ R F++++ E G DWG D A +
Sbjct 122 KRLSVSYNNFNILHPFREGNGRTQRIFWEIIAREAGWHFDWGLIDKRTNDQASIAGMQRN 181
Query 191 DLTGLVAMFKGILD--AEP 207
DL L MF+ I+ +EP
Sbjct 182 DLRPLEDMFRRIVKPLSEP 200
>gi|121582545|ref|YP_974077.1| filamentation induced by cAMP protein Fic [Acidovorax sp. JS42]
gi|120608603|gb|ABM44342.1| filamentation induced by cAMP protein Fic [Acidovorax sp. JS42]
Length=362
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/178 (38%), Positives = 97/178 (55%), Gaps = 7/178 (3%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y P VL+N+ R A L+ E R+ ELRE+P + DLA+L+AIH+Q+F
Sbjct 7 YTYPGTHVLKNKADIRDLAALQRFERGATAVRIQELRENP--VRGEYDLAHLQAIHKQVF 64
Query 77 QDIYVWAGDLRTVGIEK----EDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQ 132
+D+Y WAG++R V I K + F I + + + + I + + LR + + +G+
Sbjct 65 RDVYEWAGEVRKVDIAKGPAGDRTLFTFKEDIPQKAQEIQSAIKEANYLRGMDKEQFSGK 124
Query 133 VAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELH-GACHVARAN 189
+A Y VN HPFREGNGR+TREF L + G LD+ K D + + A AR N
Sbjct 125 MAEVYAGVNEMHPFREGNGRTTREFIGQLAKDAGYQLDYSKVDKQTWNEAAKESARGN 182
>gi|309783324|ref|ZP_07678034.1| Fic protein [Ralstonia sp. 5_7_47FAA]
gi|330827365|ref|YP_004390603.1| filamentation induced by cAMP protein Fic [Alicycliphilus denitrificans
K601]
gi|308917868|gb|EFP63555.1| Fic protein [Ralstonia sp. 5_7_47FAA]
gi|329312673|gb|AEB87087.1| filamentation induced by cAMP protein Fic [Alicycliphilus denitrificans
K601]
Length=362
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/178 (38%), Positives = 97/178 (55%), Gaps = 7/178 (3%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y P VL+N+ R A L+ E R+ ELRE+P + DLA+L+AIH+Q+F
Sbjct 7 YTYPGTHVLKNKADIRDLAALQRFERGATAVRIQELRENP--VRGEYDLAHLQAIHKQVF 64
Query 77 QDIYVWAGDLRTVGIEK----EDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQ 132
+D+Y WAG++R V I K + F I + + + + I + + LR + + +G+
Sbjct 65 RDVYEWAGEVRKVDIAKGPAGDRTLFTFKEDIPQKAQEIQSAIKEANYLRGMDKEQFSGK 124
Query 133 VAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELH-GACHVARAN 189
+A Y VN HPFREGNGR+TREF L + G LD+ K D + + A AR N
Sbjct 125 MAEVYAGVNEMHPFREGNGRTTREFIGQLAKDAGYQLDYSKVDKQTWNEAAKESARGN 182
>gi|262369033|ref|ZP_06062362.1| cell filamentation protein [Acinetobacter johnsonii SH046]
gi|262316711|gb|EEY97749.1| cell filamentation protein [Acinetobacter johnsonii SH046]
Length=198
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/186 (36%), Positives = 95/186 (52%), Gaps = 8/186 (4%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVE--ARVIELREDPNLLGDRTDLAYLRAIHRQ 74
Y P S+L+N++ + L AE +L E + IE E P DL YL+ IH
Sbjct 12 YCYPNSSILKNKLHIQDEKILEQAELELSEYASLHIEYTEPP------YDLQYLKNIHYS 65
Query 75 LFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVA 134
LF D+Y WAG+LR V I K D FC I + ++ + + + + L ++A
Sbjct 66 LFSDLYEWAGELRQVDISKGDTRFCTFSRIEVEANKLFKQLQSQNYFQHIEKQKLIMKLA 125
Query 135 YRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTG 194
Y +N HPFREGNGR+ R FF+ LL+ G G+DW + + +E +V L G
Sbjct 126 DFYCELNVIHPFREGNGRTQRIFFEHLLAYCGYGVDWSQIESQERWIQANVEGFYGHLDG 185
Query 195 LVAMFK 200
LV +FK
Sbjct 186 LVQIFK 191
>gi|262374376|ref|ZP_06067651.1| cell filamentation protein fic [Acinetobacter junii SH205]
gi|262310633|gb|EEY91722.1| cell filamentation protein fic [Acinetobacter junii SH205]
Length=198
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/186 (33%), Positives = 94/186 (51%), Gaps = 8/186 (4%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDL--VEARVIELREDPNLLGDRTDLAYLRAIHRQ 74
Y P ++L+N++ L AE +L + + +IE E P DL YL++IH Q
Sbjct 12 YCYPGTNILKNKLNIHDEQILEQAELELSGLASNLIEYAEPP------YDLQYLKSIHAQ 65
Query 75 LFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVA 134
LF D+Y WAG LR + I K D FC I + + + + + L Q+A
Sbjct 66 LFGDLYDWAGKLRQIDISKGDTRFCNFSRIEIETNKLLKPLQEKKYFQGLAPQQLIPQLA 125
Query 135 YRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTG 194
Y +N HPFREGNGR+ R FF+ L++ G G+DW + D ++ ++ +L
Sbjct 126 DLYCELNVIHPFREGNGRTQRIFFEHLIAHCGYGIDWSRIDSQQQWIQANIEGFYGNLNP 185
Query 195 LVAMFK 200
L+ +F+
Sbjct 186 LIKIFE 191
>gi|283457206|ref|YP_003361776.1| hypothetical protein RMDY18_01240 [Rothia mucilaginosa DY-18]
gi|283133191|dbj|BAI63956.1| protein involved in cell division [Rothia mucilaginosa DY-18]
Length=211
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/171 (36%), Positives = 93/171 (55%), Gaps = 7/171 (4%)
Query 9 DHERNWQGYFIPA--MSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLA 66
H++NW YF P V+RN+ G + A L E+ ++ R EL ++P L+ D
Sbjct 2 SHQQNWAAYFYPEPHQHVMRNKPGIKDPAALSLYEHRIITRRGYELTKNPELITHTFDAE 61
Query 67 YLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCA----PGGISRPMEHVAAEIYQLDRLR 122
+L+AIHR LFQD+Y WAG+ RTV + K +F + P I R +++V A D
Sbjct 62 HLKAIHRYLFQDVYDWAGEYRTVDMSKGVSAFASVQDGPLSIDRYLDYVFATSRATD-WA 120
Query 123 AVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGK 173
++ + A + ++N+AHPFREGNGR+TR F D + + D+ +
Sbjct 121 SLNHQEFVEVAAAIFAHLNHAHPFREGNGRATRIFMDHVAARSNFRFDYAR 171
>gi|152972255|ref|YP_001337401.1| cell filamentation protein Fic [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150957104|gb|ABR79134.1| hypothetical protein KPN_03747 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|339764009|gb|AEK00230.1| cell filamentation protein Fic [Klebsiella pneumoniae KCTC 2242]
Length=200
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/188 (35%), Positives = 92/188 (49%), Gaps = 5/188 (2%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y PA++VLRNR+G R L+ A ++ R L P + G L YL AIH QL+
Sbjct 12 YLYPALNVLRNRLGIRQAKNLQQAAFEMTALRAATLPLGPRVRG----LPYLCAIHHQLY 67
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
QD++ WAG LR V + D FC I + + Q D L + ++++
Sbjct 68 QDLFDWAGRLREVNLYLGDTPFCHFARIEEEGNALMQALEQEDYLNGLPRDTFIERLSWF 127
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLV 196
Y +N HPFR GNG + R FF+ L G L+W D AC + A DL LV
Sbjct 128 YGEINVLHPFRLGNGLTQRIFFEQLAIHAGYLLNWRDVDPAGWSAACQQS-AMGDLAPLV 186
Query 197 AMFKGILD 204
A+F+ ++
Sbjct 187 AIFRKVVS 194
>gi|238896844|ref|YP_002921589.1| cell filamentation protein Fic [Klebsiella pneumoniae NTUH-K2044]
gi|329998951|ref|ZP_08303262.1| toxin-antitoxin system, toxin component, Fic family [Klebsiella
sp. MS 92-3]
gi|238549171|dbj|BAH65522.1| hypothetical protein KP1_5075 [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|328538511|gb|EGF64623.1| toxin-antitoxin system, toxin component, Fic family [Klebsiella
sp. MS 92-3]
Length=200
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/188 (35%), Positives = 92/188 (49%), Gaps = 5/188 (2%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y PA++VLRNR+G R L+ A ++ R L P + G L YL AIH QL+
Sbjct 12 YLYPALNVLRNRLGIRQAKNLQQAAFEMTALRAATLPLGPRVRG----LPYLCAIHHQLY 67
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
QD++ WAG LR V + D FC I + + Q D L + ++++
Sbjct 68 QDLFDWAGRLREVNLYLGDTPFCHFARIEEEGNALMQALEQEDYLSGLPRDTFIERLSWF 127
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLV 196
Y +N HPFR GNG + R FF+ L G L+W D AC + A DL LV
Sbjct 128 YGEINVLHPFRLGNGLTQRIFFEQLAIHAGYLLNWRDVDPAGWSAACQQS-AMGDLAPLV 186
Query 197 AMFKGILD 204
A+F+ ++
Sbjct 187 AIFRKVVS 194
>gi|157148945|ref|YP_001456264.1| cell filamentation protein Fic [Citrobacter koseri ATCC BAA-895]
gi|157086150|gb|ABV15828.1| hypothetical protein CKO_04783 [Citrobacter koseri ATCC BAA-895]
Length=200
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/193 (35%), Positives = 101/193 (53%), Gaps = 6/193 (3%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y P ++++RNR+G R L A +L R + P + G L +LRAIHRQL+
Sbjct 12 YLYPGLNIMRNRLGIRQVQRLEQAAYELTALRAATIEPGPLVRG----LPHLRAIHRQLY 67
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
QD++ WAG LR V I + D FC I + + ++ + L + + A ++A+
Sbjct 68 QDVFDWAGQLREVDIYQGDTRFCHFAYIEKEGNALMQDLEEEGYLVGLTKEKFADRLAHY 127
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLV 196
Y +N HPFR G+G + R FF+ L G L W + E A + + A DL+GL
Sbjct 128 YCEINVLHPFRIGSGLAQRIFFEQLALHAGYILSWSGIQVAEWSQA-NQSGAMGDLSGLQ 186
Query 197 AMF-KGILDAEPT 208
A+F KG+ +A+ T
Sbjct 187 AIFRKGVSEAQET 199
>gi|295798223|emb|CAZ15864.1| probable fic-family protein [Xanthomonas albilineans]
Length=308
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/167 (36%), Positives = 86/167 (52%), Gaps = 2/167 (1%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y PA ++RN VGAR+ EL E R EL + P + R DL +LR+IH+ LF
Sbjct 11 YVDPATGIMRNLVGARSQPELDRIEAAFASVRAYELEKGPAV--GRYDLDHLRSIHQTLF 68
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
D+Y WAG++RTV IEK + F P I + ++ + LR +G + A + +
Sbjct 69 GDVYPWAGEIRTVIIEKGETRFAMPDHIEGAGAKLFRQLAREQNLRGLGPDEFASRAGHY 128
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGAC 183
+N HPFREGNGR+ R F L S+ + W +E+ A
Sbjct 129 LGEINALHPFREGNGRAQRAFVGQLASDAYYSIAWDHVSRDEMTRAS 175
>gi|322831013|ref|YP_004211040.1| filamentation induced by cAMP protein Fic [Rahnella sp. Y9602]
gi|321166214|gb|ADW71913.1| filamentation induced by cAMP protein Fic [Rahnella sp. Y9602]
Length=200
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/191 (34%), Positives = 97/191 (51%), Gaps = 5/191 (2%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y+ ++VL+NR+ R L AE R + P ++G L ++ A+H LF
Sbjct 12 YYYTGINVLKNRLEIREEHRLLQAELAFTALRASAMPLGPAVMG----LPHMCAVHLSLF 67
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
QDIY WAG+ R + I K+D FC I + + E+ + + L + +LA ++A+
Sbjct 68 QDIYAWAGEFREIDIYKDDTQFCHFEYIEKEGNALMQELEEEEFLVGLPLDNLAERLAHY 127
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLV 196
Y +N HPFREGNGR+ R F + L+ G +DW K D E A A D + LV
Sbjct 128 YTGLNLLHPFREGNGRALRIFIEQLVIHAGYDIDWSKVDRERWLAANKTA-VFGDESELV 186
Query 197 AMFKGILDAEP 207
A+F ++ P
Sbjct 187 AIFNTVVSEIP 197
>gi|290512041|ref|ZP_06551409.1| cell filamentation protein [Klebsiella sp. 1_1_55]
gi|289775831|gb|EFD83831.1| cell filamentation protein [Klebsiella sp. 1_1_55]
Length=200
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/188 (35%), Positives = 91/188 (49%), Gaps = 5/188 (2%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y PA++VLRNR+G R L+ A ++ R L P + G L YL AIH QL+
Sbjct 12 YLYPALNVLRNRLGIRQAKNLQQAAFEMTALRAATLPLGPRVRG----LPYLCAIHHQLY 67
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
QD++ WAG LR V + D FC I + + Q D L + ++++
Sbjct 68 QDLFDWAGRLREVNLYLGDTPFCHFARIEEEGNALMQALEQEDYLNGLPRETFIERLSWF 127
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLV 196
Y +N HPFR GNG + R FF+ L G LDW D AC + A D LV
Sbjct 128 YGEINVLHPFRLGNGLTQRIFFEQLAIHAGYLLDWRDVDPAGWSAACQQS-AMGDPAPLV 186
Query 197 AMFKGILD 204
A+F+ ++
Sbjct 187 AIFRKVVS 194
>gi|327395540|dbj|BAK12962.1| cell filamentation protein Fic [Pantoea ananatis AJ13355]
Length=199
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/156 (38%), Positives = 84/156 (54%), Gaps = 4/156 (2%)
Query 23 SVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLFQDIYVW 82
+VL+NR+ A+LR AE AR+ L P +G L YL IHR LFQD+Y W
Sbjct 18 TVLKNRLDIHDAAQLRKAELSFSAARLATLELGPRKIG----LPYLCHIHRTLFQDVYSW 73
Query 83 AGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYRYDYVNY 142
AG+LRT+ I +++ FC I + + A + + L + + + ++A+ Y VN
Sbjct 74 AGELRTLDIWRDETPFCHFEYIEKEGNALMAALEEEKALACLPQAEFVKRIAWYYCEVNM 133
Query 143 AHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEE 178
HPFREGNGR+ R FF+ L G L+W E+
Sbjct 134 LHPFREGNGRAQRIFFEQLALHAGYVLEWDNLSAED 169
>gi|291619210|ref|YP_003521952.1| Fic [Pantoea ananatis LMG 20103]
gi|291154240|gb|ADD78824.1| Fic [Pantoea ananatis LMG 20103]
Length=199
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/156 (38%), Positives = 84/156 (54%), Gaps = 4/156 (2%)
Query 23 SVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLFQDIYVW 82
+VL+NR+ A+LR AE AR+ L P +G L YL IHR LFQD+Y W
Sbjct 18 TVLKNRLDIHDAAQLRKAELSFSAARLATLELGPCKIG----LPYLCHIHRTLFQDVYSW 73
Query 83 AGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYRYDYVNY 142
AG+LRT+ I +++ FC I + + A + + L + + + ++A+ Y VN
Sbjct 74 AGELRTLDIWRDETPFCHFEYIEKEGNALMAALEEEKALACLPQAEFVKRIAWYYCEVNM 133
Query 143 AHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEE 178
HPFREGNGR+ R FF+ L G L+W E+
Sbjct 134 LHPFREGNGRAQRIFFEQLALHAGYVLEWDNLSAED 169
>gi|330808536|ref|YP_004352998.1| Cell filamentation protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376644|gb|AEA67994.1| Cell filamentation protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length=199
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/190 (33%), Positives = 95/190 (50%), Gaps = 9/190 (4%)
Query 16 GYFIPAMSVLRNRVGARTHAELRDAENDL--VEARVIELREDPNLLGDRTDLAYLRAIHR 73
Y P +VLRN++ R L +AE L + A +E P LAYL+ IHR
Sbjct 11 AYCYPGSTVLRNKLDIRDEPTLSEAEQQLSAIAADNVEFSPPP------YSLAYLQNIHR 64
Query 74 QLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQV 133
LF D++ WAG+LRTVG+ K+ FC P + + + A + + + + +L V
Sbjct 65 ILFSDLFEWAGELRTVGMSKQATRFCQPEYMEKEANKIFANMAEANWFEGMERAELIVAV 124
Query 134 AYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLT 193
A Y +N HPFREGNGR+ R F+ L+ G + W + +E A ++A N +
Sbjct 125 AEAYSDINVVHPFREGNGRAQRILFEHLIMNAGFEISWWGIEKDEWIFA-NIAAYNGVME 183
Query 194 GLVAMFKGIL 203
+ +F+ +
Sbjct 184 PMEQVFEKCI 193
>gi|206575851|ref|YP_002236252.1| cell filamentation protein Fic [Klebsiella pneumoniae 342]
gi|288933238|ref|YP_003437297.1| filamentation induced by cAMP protein Fic [Klebsiella variicola
At-22]
gi|206564909|gb|ACI06685.1| cell filamentation protein Fic [Klebsiella pneumoniae 342]
gi|288887967|gb|ADC56285.1| filamentation induced by cAMP protein Fic [Klebsiella variicola
At-22]
Length=200
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/188 (35%), Positives = 91/188 (49%), Gaps = 5/188 (2%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y PA++VLRNR+G R L+ A ++ R L P + G L YL AIH QL+
Sbjct 12 YLYPALNVLRNRLGIRQAKNLQQAAFEMTALRAATLPLGPRVRG----LPYLCAIHHQLY 67
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
QD++ WAG LR V + D FC I + + Q D L + ++++
Sbjct 68 QDLFDWAGRLREVNLYLGDTPFCHFARIEEEGNALMQALEQEDYLNGLPREIFIERLSWF 127
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLV 196
Y +N HPFR GNG + R FF+ L G LDW D AC + A D LV
Sbjct 128 YGEINVLHPFRLGNGLTQRIFFEQLAIHAGYLLDWRDVDPAGWSAACQQS-AMGDPAPLV 186
Query 197 AMFKGILD 204
A+F+ ++
Sbjct 187 AIFRKVVS 194
>gi|330836733|ref|YP_004411374.1| filamentation induced by cAMP protein Fic [Spirochaeta coccoides
DSM 17374]
gi|329748636|gb|AEC01992.1| filamentation induced by cAMP protein Fic [Spirochaeta coccoides
DSM 17374]
Length=226
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/199 (33%), Positives = 99/199 (50%), Gaps = 10/199 (5%)
Query 13 NWQGYF-IPAMSVLRNRVGARTHAEL-------RDAENDLVEARVIELREDPNLLGDRTD 64
NW G F P ++LRN E R + V+ +++E E + D
Sbjct 4 NWDGDFSYPNSNMLRNNFNLYNSGEAGLLYLIERKITTNTVK-KLLERSEGKTIKVKDFD 62
Query 65 LAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAV 124
L +L+ +H+++F +Y WAG +RT + K D SFC I+ E++ +I + LR +
Sbjct 63 LPFLQGLHKEIFSGVYPWAGHMRTFNMAKGDTSFCPADYIATQGEYIRQKIQDTNYLRDM 122
Query 125 GEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACH 184
+ D A + +D VN HPFREGNGR+ R FF LL + G LD+ K ELH
Sbjct 123 SKEDFAYKSTELFDLVNDLHPFREGNGRTQRVFFTLLGRQAGYELDFSKIP-SELHNEAA 181
Query 185 VARANSDLTGLVAMFKGIL 203
+ A+ D L+ F+ I+
Sbjct 182 IRAAHGDKRMLLDHFRKIV 200
>gi|323484997|ref|ZP_08090351.1| filamentation induced by cAMP protein Fic [Clostridium symbiosum
WAL-14163]
gi|323401739|gb|EGA94083.1| filamentation induced by cAMP protein Fic [Clostridium symbiosum
WAL-14163]
Length=200
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/166 (33%), Positives = 91/166 (55%), Gaps = 3/166 (1%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y P +L+N++ R L +AE ++ R++EL+++P + Y + +H+Q+F
Sbjct 14 YCYPDSFILKNKLNIRDPETLEEAERNITALRILELKQNPP--KGKLTFKYFQKLHKQIF 71
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
DIY WAG +R V I K + FC I ME + +E+ + + L+ ++A ++AY
Sbjct 72 GDIYEWAGKVRNVNIAKGN-MFCDCRFIEDMMEELFSELEKENYLQPCDTEEMADRLAYY 130
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGA 182
+N HPFREGNGR+ R F ++L G +D+ + EE+ A
Sbjct 131 LSEINALHPFREGNGRTQRLFIEILAERAGYEVDFSEVSAEEMVEA 176
>gi|317152131|ref|YP_004120179.1| filamentation induced by cAMP protein Fic [Desulfovibrio aespoeensis
Aspo-2]
gi|316942382|gb|ADU61433.1| filamentation induced by cAMP protein Fic [Desulfovibrio aespoeensis
Aspo-2]
Length=195
Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/158 (38%), Positives = 80/158 (51%), Gaps = 5/158 (3%)
Query 16 GYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQL 75
Y SVL+N+ G R L E V R++E + N D +++AIHR L
Sbjct 10 AYTYENSSVLKNKAGHRDQEALDKFERLSVANRMVEDPPNGNF-----DYQHIKAIHRHL 64
Query 76 FQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAY 135
FQD+Y WAG+ RTV I K + FC P I+ + + AE+ Q + L+ Q AY
Sbjct 65 FQDVYDWAGEERTVSISKGETLFCNPRFIANSVTTLTAELAQENHLKNNSPEKFVEQAAY 124
Query 136 RYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGK 173
+N AHPFREGNGR+ R + LL G +D K
Sbjct 125 YMLELNVAHPFREGNGRTARYYLSLLAHNAGYDIDTEK 162
>gi|317049872|ref|YP_004117520.1| filamentation induced by cAMP protein Fic [Pantoea sp. At-9b]
gi|316951489|gb|ADU70964.1| filamentation induced by cAMP protein Fic [Pantoea sp. At-9b]
Length=197
Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/181 (35%), Positives = 92/181 (51%), Gaps = 5/181 (2%)
Query 23 SVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLFQDIYVW 82
SVL+NR+ A+LR AE AR+ L P RT + +L IHR LFQD+Y W
Sbjct 18 SVLKNRLNIHDSAQLRKAELAFSAARLATLDLGPQ----RTGMPWLCHIHRTLFQDLYSW 73
Query 83 AGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYRYDYVNY 142
AG+LRTV I ++ +C I + ++ + + + L + + + ++A+ Y +
Sbjct 74 AGELRTVDIWSDETPYCHCAYIEKEGNNLMSALADEEGLAHLAQDEFIARLAHYYCEIYV 133
Query 143 AHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLVAMFKGI 202
HPFR GNGR+ R FF+ L G L W K D + A A DLT L A F +
Sbjct 134 LHPFRAGNGRAQRIFFEQLALHAGYLLTWDKLDRDNWRAAIREA-VGGDLTLLSAQFAKV 192
Query 203 L 203
+
Sbjct 193 V 193
>gi|330964433|gb|EGH64693.1| cell filamentation protein Fic [Pseudomonas syringae pv. actinidiae
str. M302091]
Length=194
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/162 (36%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y PA SVLRNR+ + +L AE ++ + V + + L ++ +HRQLF
Sbjct 11 YCYPASSVLRNRLNIQDMDDLEAAEREITASTVTRV----HYTAPPYSLENMKQLHRQLF 66
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
D+Y WAG++RTV I K FC I + ++ ++D LR + G +A
Sbjct 67 SDLYEWAGEIRTVDISKGGTRFCTCARIEAEALKIFTKLQEVDWLRKQDKDSFCGLLAEY 126
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEE 178
Y +N HPFREGNGR R FF+ L G LDW EE
Sbjct 127 YCELNMIHPFREGNGRVQRIFFEHLALSAGYELDWENISQEE 168
>gi|290791092|gb|ADD63317.1| hypothetical protein [uncultured bacterium pAKD4]
Length=323
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/184 (32%), Positives = 89/184 (49%), Gaps = 3/184 (1%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y VLRN +G + L AE+ L R ELRE P + + DLA+L+ IH++LF
Sbjct 11 YLDSETGVLRNLLGIKEQGGLDKAESTLSFLRASELREQP--VKGKFDLAHLQRIHKRLF 68
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
D+Y WAG +R V I K F I + + ++ + LR + + + + +
Sbjct 69 GDVYDWAGQIRQVEISKGSTMFARQVAIQSAAQQLFGQLAKEQLLRGLDADEFSKRAGHY 128
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLV 196
+N HPFREGNGR+ REF L + G +DW + A + N D +G+
Sbjct 129 LGEINVLHPFREGNGRTQREFIGQLAQQAGHRIDWSGVSQASMTQAS-IEAYNGDSSGMA 187
Query 197 AMFK 200
+ +
Sbjct 188 GLIR 191
>gi|312958377|ref|ZP_07772898.1| filamentation induced by cAMP protein [Pseudomonas fluorescens
WH6]
gi|311287441|gb|EFQ66001.1| filamentation induced by cAMP protein [Pseudomonas fluorescens
WH6]
Length=201
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/191 (35%), Positives = 91/191 (48%), Gaps = 11/191 (5%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y P SVLRNR+ L AE +L E V L L DL L+ IHR LF
Sbjct 12 YCYPGSSVLRNRLDLLDEHRLHQAERELSEIAVGNL----PLFPPPYDLDRLQHIHRTLF 67
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
DIY WAG+LR+V I+K D FC P I + + + + + +L Q+A
Sbjct 68 GDIYDWAGELRSVNIQKGDTLFCTPERIPPEAAKIIRHMEEANWFVGASQAELVTQIAQA 127
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGA---CHVARANSDLT 193
Y +N HPFREGNGR+ R F+ ++ G ++W H A ++ D
Sbjct 128 YGDLNVIHPFREGNGRAQRILFEQIIVNAGFSVNWWLVK----HAAWIPANIDAVACDYR 183
Query 194 GLVAMFKGILD 204
GL A+F+ ++
Sbjct 184 GLEAIFERCIN 194
>gi|229587835|ref|YP_002869954.1| cell filamentation protein [Pseudomonas fluorescens SBW25]
gi|229359701|emb|CAY46549.1| cell filamentation protein [Pseudomonas fluorescens SBW25]
Length=199
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/187 (35%), Positives = 89/187 (48%), Gaps = 11/187 (5%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y P SVLRNR+ L AE +L E V L L DL L+ IHR LF
Sbjct 12 YCYPGSSVLRNRLDLLDETRLHQAERELSEIAVGSL----PLFAPPYDLERLQHIHRTLF 67
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
DIY WAG+LR+V I+K D FC P I + + + + + +L Q+A
Sbjct 68 GDIYDWAGELRSVNIQKGDTLFCTPERIPPEAAKIIRRMAEANWYVGASQAELITQIAEA 127
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGA---CHVARANSDLT 193
Y +N HPFREGNGR+ R F+ ++ G ++W H A ++ D
Sbjct 128 YGDLNVIHPFREGNGRAQRILFEQIIVNAGFSVNWWLVK----HAAWVPANIDAVACDYR 183
Query 194 GLVAMFK 200
GL A+F+
Sbjct 184 GLEAIFE 190
>gi|45368549|ref|NP_990877.1| hypothetical protein pEST4011_02 [Achromobacter denitrificans]
gi|282167249|ref|YP_003358113.1| ORF8 [Burkholderia cepacia]
gi|44937718|gb|AAS49418.1| unknown [Achromobacter denitrificans]
gi|70779415|gb|AAZ08195.1| ORF8 [Burkholderia cepacia]
Length=202
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/184 (32%), Positives = 89/184 (49%), Gaps = 3/184 (1%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y VLRN +G + L AE+ L R ELRE P + + DLA+L+ IH++LF
Sbjct 11 YLDSETGVLRNLLGIKEQGGLDKAESTLSFLRASELREQP--VKGKFDLAHLQRIHKRLF 68
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
D+Y WAG +R V I K F I + + ++ + LR + + + + +
Sbjct 69 GDVYDWAGQIRQVEISKGSTMFARQVAIQSAAQQLFGQLAKEQLLRGLDADEFSKRAGHY 128
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLV 196
+N HPFREGNGR+ REF L + G +DW + A + N D +G+
Sbjct 129 LGEINVLHPFREGNGRTQREFIGQLAQQAGHRIDWSGVSQASMTQAS-IEAYNGDSSGMA 187
Query 197 AMFK 200
+ +
Sbjct 188 GLIR 191
>gi|308188392|ref|YP_003932523.1| cell filamentation protein fic [Pantoea vagans C9-1]
gi|308058902|gb|ADO11074.1| Cell filamentation protein fic [Pantoea vagans C9-1]
Length=197
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/182 (36%), Positives = 89/182 (49%), Gaps = 5/182 (2%)
Query 23 SVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLFQDIYVW 82
+VL+N A+LR AE AR L P G L YLR IHR LFQD+Y W
Sbjct 18 TVLKNLADIHDAAQLRKAELSFSAARAATLELGPRNPG----LPYLRQIHRTLFQDVYSW 73
Query 83 AGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYRYDYVNY 142
AG+LRT+ I +++ FC I + + A + + L + + ++ + Y +N
Sbjct 74 AGELRTIDIWRDETPFCHFEYIEKEGNALMAALEEEKGLAELPRDEFIQRITHYYCEINM 133
Query 143 AHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLVAMFKGI 202
HPFR GNGR+ R FF+ L G L W +TD E A A DLT L +F +
Sbjct 134 LHPFRHGNGRAQRIFFEQLALHAGYLLLWEETDAESWKAANQAGVA-GDLTPLEQVFAKV 192
Query 203 LD 204
+
Sbjct 193 VS 194
>gi|317152212|ref|YP_004120260.1| filamentation induced by cAMP protein Fic [Desulfovibrio aespoeensis
Aspo-2]
gi|316942463|gb|ADU61514.1| filamentation induced by cAMP protein Fic [Desulfovibrio aespoeensis
Aspo-2]
Length=195
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/183 (37%), Positives = 92/183 (51%), Gaps = 6/183 (3%)
Query 16 GYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQL 75
GY VL+N G RT +L E V R++E D + D +L+ IH L
Sbjct 10 GYTYDDSPVLKNLAGHRTQEDLDKFERISVAIRMMEAPPDGDF-----DYPHLKRIHHHL 64
Query 76 FQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAY 135
FQD+Y WAGD R V I K FC P I+ + + +E+ + + LRA+ D + A+
Sbjct 65 FQDVYDWAGDERNVSISKGATQFCNPRFIASFVTGLLSELAEENHLRAIPAEDFVDRAAH 124
Query 136 RYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACH-VARANSDLTG 194
+N AHPFREGNGR+ R F LL G GLD + + L + V+ S + G
Sbjct 125 YMLELNMAHPFREGNGRACRYFLFLLAQNAGYGLDGERLENGWLDASIKGVSGDKSPMRG 184
Query 195 LVA 197
L+A
Sbjct 185 LIA 187
>gi|298487942|ref|ZP_07005981.1| Cell filamentation protein fic [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|298157493|gb|EFH98574.1| Cell filamentation protein fic [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
Length=201
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/190 (33%), Positives = 94/190 (50%), Gaps = 9/190 (4%)
Query 13 NWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEA--RVIELREDPNLLGDRTDLAYLRA 70
N Y P S+L+NR+ + L DAE L E +IE P DL+YL+
Sbjct 8 NQDPYCYPGTSILKNRLNLTSDDLLSDAERALSEVALSLIEFAPPP------YDLSYLKY 61
Query 71 IHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLA 130
+HR LF D+Y WAG+LRTV I K + FC I + + A + ++ L+ + L
Sbjct 62 LHRLLFADLYDWAGELRTVDISKGNTRFCTTTRIEPEAKKIFAPLANVNWLQELEREQLV 121
Query 131 GQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANS 190
A + +N HPFREGNGR+ R F+ L+ G + W + EE A ++ +
Sbjct 122 NASAEAFGDLNVIHPFREGNGRAQRVLFEHLIMNAGYEISWWAVEAEEWMQA-NIYAVDC 180
Query 191 DLTGLVAMFK 200
+ L+ +F+
Sbjct 181 EYGPLINVFE 190
>gi|304397798|ref|ZP_07379674.1| filamentation induced by cAMP protein Fic [Pantoea sp. aB]
gi|304354509|gb|EFM18880.1| filamentation induced by cAMP protein Fic [Pantoea sp. aB]
Length=197
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/181 (36%), Positives = 90/181 (50%), Gaps = 5/181 (2%)
Query 23 SVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLFQDIYVW 82
+VL+N A+LR AE AR L P G L YLR IHR LFQD+Y W
Sbjct 18 NVLKNLPDIHDAAQLRKAELSFSAARAATLELGPRNPG----LPYLRQIHRTLFQDVYSW 73
Query 83 AGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYRYDYVNY 142
AG+LRT+ I +++ FC I + + A + + L + + ++A+ Y +N
Sbjct 74 AGELRTIDIWRDETPFCHFEYIEKEGNALMAALEEEKGLADLPRDEFIQRLAHYYCEINM 133
Query 143 AHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLVAMFKGI 202
HPFR GNGR+ R FF+ L G L+W +TD E A A DL L +F +
Sbjct 134 LHPFRHGNGRAQRIFFEQLALHAGYLLNWEETDAESWKAANQAGVA-GDLVPLEQVFAKV 192
Query 203 L 203
+
Sbjct 193 V 193
>gi|297194698|ref|ZP_06912096.1| filamentation induced by cAMP protein Fic [Streptomyces pristinaespiralis
ATCC 25486]
gi|197720366|gb|EDY64274.1| filamentation induced by cAMP protein Fic [Streptomyces pristinaespiralis
ATCC 25486]
Length=189
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/152 (39%), Positives = 78/152 (52%), Gaps = 3/152 (1%)
Query 24 VLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLFQDIYVWA 83
VLRN++G H L AE D+ AR++ L E P L DL + +A H +F DIY WA
Sbjct 11 VLRNKLGITDHQLLAAAEADITRARLVMLAEQP--LPGAYDLGHYQAFHAAIFGDIYPWA 68
Query 84 GDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYRYDYVNYA 143
G+LRTV I K FC + V + RLR++ + Q+A Y +N
Sbjct 69 GELRTVNIAKR-TPFCPARNLVPYAGEVFGRLASSGRLRSLPRQEFVIQLATLYGDLNVL 127
Query 144 HPFREGNGRSTREFFDLLLSERGSGLDWGKTD 175
HPFREGNGR+ R F L ++ G L W D
Sbjct 128 HPFREGNGRAQRAFLARLSADAGYALSWSGMD 159
>gi|327309921|ref|YP_004336819.1| filamentation induced by cAMP protein Fic [Pseudonocardia dioxanivorans
CB1190]
gi|326955256|gb|AEA28952.1| filamentation induced by cAMP protein Fic [Pseudonocardia dioxanivorans
CB1190]
Length=194
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/191 (34%), Positives = 86/191 (46%), Gaps = 3/191 (1%)
Query 13 NWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIH 72
+W Y P VLRNR+G L AE + + +L P L DL +L+A H
Sbjct 3 SWDPYLDPESGVLRNRLGITDPHTLSQAEAAIATNAMAQLTRSP--LPGHYDLRHLQAFH 60
Query 73 RQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQ 132
R +F DIY WAG+LRTV + K + FC P I R + + D LR + +
Sbjct 61 RFIFGDIYEWAGELRTVTLGKAGQMFCPPHDIQRRAGQLFLGLAARDHLRGLDREPFLDE 120
Query 133 VAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDL 192
+ + + HPFREGNGR+ R L + G L W D E A A + DL
Sbjct 121 LTALLAALTFLHPFREGNGRTQRALLAQLSRDAGYTLRWAVLDAGENASASRAAH-DGDL 179
Query 193 TGLVAMFKGIL 203
L M +L
Sbjct 180 KPLRTMLSTVL 190
>gi|330892404|gb|EGH25065.1| filamentation induced by cAMP protein Fic [Pseudomonas syringae
pv. mori str. 301020]
gi|330892431|gb|EGH25092.1| filamentation induced by cAMP protein Fic [Pseudomonas syringae
pv. mori str. 301020]
Length=185
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/172 (35%), Positives = 85/172 (50%), Gaps = 8/172 (4%)
Query 13 NWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEA--RVIELREDPNLLGDRTDLAYLRA 70
N Y P S+L+NR+ + L DAE L E +IE P DL+YL+
Sbjct 8 NQDPYCYPGTSILKNRLNLTSDDLLSDAERALSEVALSLIEFAPPP------YDLSYLKY 61
Query 71 IHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLA 130
+HR LF D+Y WAG+LRTV I K + FC I + + A + ++ L+ + L
Sbjct 62 LHRLLFADLYDWAGELRTVDISKGNTRFCTTTRIEPEAKKIFAPLANVNWLQELEREQLV 121
Query 131 GQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGA 182
A + +N HPFREGNGR+ R F+ L+ G + W + EE A
Sbjct 122 NASAEAFGDLNVIHPFREGNGRAQRVLFEHLIMNAGYEISWWAVEAEEWMQA 173
>gi|70728393|ref|YP_258142.1| cell filamentation protein Fic [Pseudomonas fluorescens Pf-5]
gi|68342692|gb|AAY90298.1| cell filamentation protein Fic [Pseudomonas fluorescens Pf-5]
Length=194
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/189 (33%), Positives = 92/189 (49%), Gaps = 5/189 (2%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y PA SVL+N++ + A L AE D+ V +R + L + +HRQLF
Sbjct 11 YCYPASSVLKNKLNIQEMAALEAAERDITALTVSRVR----YVAPPYSLENFKLLHRQLF 66
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
D+Y WAG++R V I K FC G I + + + + + L + D ++A
Sbjct 67 SDLYAWAGEIRNVDISKGGTRFCNCGRIEAEALMIFSNLQENNWLSGLERNDFCEKLAEF 126
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLV 196
Y +N HPFREGNGR R FF+ L G LDW + +E A ++ + T +
Sbjct 127 YCELNMIHPFREGNGRVQRIFFEHLALSAGYELDWEELSQDEWLEA-NINGVYVNYTPMA 185
Query 197 AMFKGILDA 205
+FK I+ A
Sbjct 186 DIFKRIVTA 194
>gi|311106514|ref|YP_003979367.1| Fic family protein 2 [Achromobacter xylosoxidans A8]
gi|310761203|gb|ADP16652.1| Fic family protein 2 [Achromobacter xylosoxidans A8]
Length=198
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/196 (37%), Positives = 91/196 (47%), Gaps = 14/196 (7%)
Query 7 TGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARV--IELREDPNLLGDRTD 64
TG + G F LRNR+ R A L AE DL E V +E P D
Sbjct 6 TGQDPYCYSGSF-----TLRNRLDIRDDARLAQAEQDLSEIAVSQLEFSLPP------YD 54
Query 65 LAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAV 124
LAYL+ +HR LFQD+Y WAG+LRT+ I K FC I + A + Q L +
Sbjct 55 LAYLKQLHRVLFQDLYDWAGELRTIDISKGGTRFCNTARIEPEANKIFAALAQAHWLIDL 114
Query 125 GEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACH 184
L VA Y +N HPFREGNGR+ R F+ L+ G + W E A +
Sbjct 115 PRDALIAAVAVAYGDLNMIHPFREGNGRAQRLLFEHLILNAGYEIGWWSVTQVEWVDA-N 173
Query 185 VARANSDLTGLVAMFK 200
+A D L A+F+
Sbjct 174 IAAVICDYAPLKAVFQ 189
>gi|283835769|ref|ZP_06355510.1| toxin-antitoxin system, toxin component, Fic family [Citrobacter
youngae ATCC 29220]
gi|291067932|gb|EFE06041.1| toxin-antitoxin system, toxin component, Fic family [Citrobacter
youngae ATCC 29220]
Length=200
Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/191 (34%), Positives = 94/191 (50%), Gaps = 5/191 (2%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y P ++V+RNR+G L A +L R + P G L +L AIHRQL+
Sbjct 12 YLYPGLNVMRNRLGIHQAQRLMQAAYELTALRAATIALGPLKRG----LPHLCAIHRQLY 67
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
QDI+ WAG LR V I + D FC I + + ++ L + E ++A+
Sbjct 68 QDIFDWAGQLREVDIYQGDTRFCHFAYIEKEGNALMQDLEDESWLVELPEEKFVDRLAHY 127
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLV 196
Y +N HPFR G+G + R FF+ L G L W +EE + A + + A DLT L
Sbjct 128 YCEINVLHPFRIGSGLAQRIFFEQLAIHAGYVLSWDDIQVEEWNQA-NQSGAMGDLTALR 186
Query 197 AMFKGILDAEP 207
A+F+ ++ P
Sbjct 187 AIFRKVVSEAP 197
>gi|312128942|ref|YP_003996282.1| filamentation induced by camp protein fic [Leadbetterella byssophila
DSM 17132]
gi|311905488|gb|ADQ15929.1| filamentation induced by cAMP protein Fic [Leadbetterella byssophila
DSM 17132]
Length=202
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/189 (34%), Positives = 88/189 (47%), Gaps = 3/189 (1%)
Query 17 YFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLF 76
Y P +LRN L E+ V R+ EL E+P + + L IHR LF
Sbjct 14 YTDPKTGLLRNLQDITDPDVLLFVESGAVTKRLQELYENPIKIKS---IDSLFEIHRHLF 70
Query 77 QDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYR 136
QDIYVWAG RTV I K+ + F ++ I ++ + LA ++A
Sbjct 71 QDIYVWAGKKRTVEISKDGKQFFPTSHFDNAFRYINQLIADFKKIPKDNKQLLAEKLAEI 130
Query 137 YDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLV 196
D VNY HPFREGNGR+ REF LL E+G L+ D + ++ SDL L
Sbjct 131 LDNVNYLHPFREGNGRTQREFLRLLAVEKGLTLNLNPPDNKSVYERYMKGTIESDLQTLT 190
Query 197 AMFKGILDA 205
+ ++D
Sbjct 191 ELIFELIDT 199
>gi|322513491|ref|ZP_08066601.1| filamentation induced by cAMP protein Fic [Actinobacillus ureae
ATCC 25976]
gi|322120710|gb|EFX92594.1| filamentation induced by cAMP protein Fic [Actinobacillus ureae
ATCC 25976]
Length=195
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/156 (38%), Positives = 87/156 (56%), Gaps = 3/156 (1%)
Query 24 VLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLFQDIYVWA 83
VL N + A+T EL + E+ +V + I+LR P + DLA+L+ IHR+LF DIY WA
Sbjct 15 VLFNNLNAKTEQELEEKESRIVALQSIKLRLLP--VEGNFDLAHLQEIHRRLFNDIYEWA 72
Query 84 GDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYRYDYVNYA 143
G++R VGI K F +P I +P + YQ + + + ++A ++AY +N
Sbjct 73 GEIRDVGITKGKTVFASPHRI-QPEFAKLYKRYQNEAFLLLSKLEVANKLAYYLSEINIL 131
Query 144 HPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEEL 179
HPFREGNGR REF L + G L + +E+
Sbjct 132 HPFREGNGRVQREFIIQLAQKFGYRLHFNGVSQQEM 167
Lambda K H
0.321 0.140 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 249157747332
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40