BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3642c

Length=64
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610778|ref|NP_218159.1|  hypothetical protein Rv3642c [Mycob...   124    6e-27
gi|118619387|ref|YP_907719.1|  hypothetical protein MUL_4216 [Myc...   114    5e-24
gi|118466164|ref|YP_880704.1|  hypothetical protein MAV_1462 [Myc...  84.0    7e-15
gi|120404611|ref|YP_954440.1|  hypothetical protein Mvan_3643 [My...  83.2    1e-14
gi|119855145|ref|YP_935750.1|  hypothetical protein Mkms_5759 [My...  80.1    9e-14
gi|225352310|ref|ZP_03743333.1|  hypothetical protein BIFPSEUDO_0...  40.4    0.094
gi|296454297|ref|YP_003661440.1|  hypothetical protein BLJ_1159 [...  39.7    0.16 
gi|241191319|ref|YP_002968713.1|  hypothetical protein Balac_1301...  38.5    0.37 
gi|183602086|ref|ZP_02963454.1|  hypothetical protein BIFLAC_0752...  38.5    0.38 
gi|170780796|ref|YP_001709128.1|  hypothetical protein CMS_0347 [...  38.1    0.40 
gi|310287722|ref|YP_003938980.1|  hypothetical protein BBIF_1201 ...  38.1    0.41 
gi|291457787|ref|ZP_06597177.1|  conserved hypothetical protein [...  38.1    0.46 


>gi|15610778|ref|NP_218159.1| hypothetical protein Rv3642c [Mycobacterium tuberculosis H37Rv]
 gi|15843252|ref|NP_338289.1| hypothetical protein MT3743.1 [Mycobacterium tuberculosis CDC1551]
 gi|31794812|ref|NP_857305.1| hypothetical protein Mb3666c [Mycobacterium bovis AF2122/97]
 70 more sequence titles
 
gi|121639555|ref|YP_979779.1| hypothetical protein BCG_3700c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148663505|ref|YP_001285028.1| hypothetical protein MRA_3677A [Mycobacterium tuberculosis H37Ra]
 gi|167968563|ref|ZP_02550840.1| hypothetical protein MtubH3_11206 [Mycobacterium tuberculosis 
H37Ra]
 gi|224992052|ref|YP_002646741.1| hypothetical protein JTY_3701 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253800682|ref|YP_003033683.1| hypothetical protein TBMG_03681 [Mycobacterium tuberculosis KZN 
1435]
 gi|254233139|ref|ZP_04926465.1| hypothetical protein TBCG_03564 [Mycobacterium tuberculosis C]
 gi|254552753|ref|ZP_05143200.1| hypothetical protein Mtube_20275 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289441072|ref|ZP_06430816.1| hypothetical protein TBLG_01815 [Mycobacterium tuberculosis T46]
 gi|289445236|ref|ZP_06434980.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289555903|ref|ZP_06445113.1| hypothetical protein TBXG_03653 [Mycobacterium tuberculosis KZN 
605]
 gi|289571878|ref|ZP_06452105.1| hypothetical protein TBJG_02766 [Mycobacterium tuberculosis T17]
 gi|289572289|ref|ZP_06452516.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289747478|ref|ZP_06506856.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289748155|ref|ZP_06507533.1| hypothetical protein TBDG_00043 [Mycobacterium tuberculosis T92]
 gi|289755769|ref|ZP_06515147.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289763818|ref|ZP_06523196.1| hypothetical protein TBIG_00127 [Mycobacterium tuberculosis GM 
1503]
 gi|294995447|ref|ZP_06801138.1| hypothetical protein Mtub2_13275 [Mycobacterium tuberculosis 
210]
 gi|297636316|ref|ZP_06954096.1| hypothetical protein MtubK4_19420 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297733309|ref|ZP_06962427.1| hypothetical protein MtubKR_19555 [Mycobacterium tuberculosis 
KZN R506]
 gi|306777994|ref|ZP_07416331.1| hypothetical protein TMAG_00130 [Mycobacterium tuberculosis SUMu001]
 gi|306778526|ref|ZP_07416863.1| hypothetical protein TMBG_02177 [Mycobacterium tuberculosis SUMu002]
 gi|306786548|ref|ZP_07424870.1| hypothetical protein TMCG_01141 [Mycobacterium tuberculosis SUMu003]
 gi|306790914|ref|ZP_07429236.1| hypothetical protein TMDG_01373 [Mycobacterium tuberculosis SUMu004]
 gi|306791234|ref|ZP_07429536.1| hypothetical protein TMEG_00132 [Mycobacterium tuberculosis SUMu005]
 gi|306796021|ref|ZP_07434323.1| hypothetical protein TMFG_01578 [Mycobacterium tuberculosis SUMu006]
 gi|306801268|ref|ZP_07437936.1| hypothetical protein TMHG_02702 [Mycobacterium tuberculosis SUMu008]
 gi|306805482|ref|ZP_07442150.1| hypothetical protein TMGG_01180 [Mycobacterium tuberculosis SUMu007]
 gi|306969773|ref|ZP_07482434.1| hypothetical protein TMIG_03267 [Mycobacterium tuberculosis SUMu009]
 gi|306974112|ref|ZP_07486773.1| hypothetical protein TMJG_00890 [Mycobacterium tuberculosis SUMu010]
 gi|307081820|ref|ZP_07490990.1| hypothetical protein TMKG_00880 [Mycobacterium tuberculosis SUMu011]
 gi|307086434|ref|ZP_07495547.1| hypothetical protein TMLG_00128 [Mycobacterium tuberculosis SUMu012]
 gi|313660641|ref|ZP_07817521.1| hypothetical protein MtubKV_19555 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339633634|ref|YP_004725276.1| hypothetical protein MAF_36490 [Mycobacterium africanum GM041182]
 gi|340628604|ref|YP_004747056.1| hypothetical protein MCAN_36521 [Mycobacterium canettii CIPT 
140010059]
 gi|2105052|emb|CAB08845.1| HYPOTHETICAL PROTEIN Rv3642c [Mycobacterium tuberculosis H37Rv]
 gi|13883609|gb|AAK48103.1| hypothetical protein MT3743.1 [Mycobacterium tuberculosis CDC1551]
 gi|31620409|emb|CAD95852.1| HYPOTHETICAL PROTEIN Mb3666c [Mycobacterium bovis AF2122/97]
 gi|121495203|emb|CAL73689.1| Hypothetical protein BCG_3700c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|124602932|gb|EAY61207.1| hypothetical protein TBCG_03564 [Mycobacterium tuberculosis C]
 gi|148507657|gb|ABQ75466.1| hypothetical protein MRA_3677A [Mycobacterium tuberculosis H37Ra]
 gi|224775167|dbj|BAH27973.1| hypothetical protein JTY_3701 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253322185|gb|ACT26788.1| hypothetical protein TBMG_03681 [Mycobacterium tuberculosis KZN 
1435]
 gi|289413991|gb|EFD11231.1| hypothetical protein TBLG_01815 [Mycobacterium tuberculosis T46]
 gi|289418194|gb|EFD15395.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289440535|gb|EFD23028.1| hypothetical protein TBXG_03653 [Mycobacterium tuberculosis KZN 
605]
 gi|289536720|gb|EFD41298.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289545632|gb|EFD49280.1| hypothetical protein TBJG_02766 [Mycobacterium tuberculosis T17]
 gi|289688006|gb|EFD55494.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289688742|gb|EFD56171.1| hypothetical protein TBDG_00043 [Mycobacterium tuberculosis T92]
 gi|289696356|gb|EFD63785.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289711324|gb|EFD75340.1| hypothetical protein TBIG_00127 [Mycobacterium tuberculosis GM 
1503]
 gi|308213706|gb|EFO73105.1| hypothetical protein TMAG_00130 [Mycobacterium tuberculosis SUMu001]
 gi|308328460|gb|EFP17311.1| hypothetical protein TMBG_02177 [Mycobacterium tuberculosis SUMu002]
 gi|308328871|gb|EFP17722.1| hypothetical protein TMCG_01141 [Mycobacterium tuberculosis SUMu003]
 gi|308332711|gb|EFP21562.1| hypothetical protein TMDG_01373 [Mycobacterium tuberculosis SUMu004]
 gi|308340204|gb|EFP29055.1| hypothetical protein TMEG_00132 [Mycobacterium tuberculosis SUMu005]
 gi|308343490|gb|EFP32341.1| hypothetical protein TMFG_01578 [Mycobacterium tuberculosis SUMu006]
 gi|308347990|gb|EFP36841.1| hypothetical protein TMGG_01180 [Mycobacterium tuberculosis SUMu007]
 gi|308351932|gb|EFP40783.1| hypothetical protein TMHG_02702 [Mycobacterium tuberculosis SUMu008]
 gi|308352692|gb|EFP41543.1| hypothetical protein TMIG_03267 [Mycobacterium tuberculosis SUMu009]
 gi|308356566|gb|EFP45417.1| hypothetical protein TMJG_00890 [Mycobacterium tuberculosis SUMu010]
 gi|308360524|gb|EFP49375.1| hypothetical protein TMKG_00880 [Mycobacterium tuberculosis SUMu011]
 gi|308364137|gb|EFP52988.1| hypothetical protein TMLG_00128 [Mycobacterium tuberculosis SUMu012]
 gi|323717691|gb|EGB26892.1| hypothetical protein TMMG_00128 [Mycobacterium tuberculosis CDC1551A]
 gi|326905477|gb|EGE52410.1| hypothetical protein TBPG_03430 [Mycobacterium tuberculosis W-148]
 gi|328460412|gb|AEB05835.1| hypothetical protein TBSG_03706 [Mycobacterium tuberculosis KZN 
4207]
 gi|339332990|emb|CCC28718.1| hypothetical protein MAF_36490 [Mycobacterium africanum GM041182]
 gi|340006794|emb|CCC45983.1| hypothetical protein MCAN_36521 [Mycobacterium canettii CIPT 
140010059]
 gi|341603576|emb|CCC66257.1| hypothetical protein BCGM_3664c [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344221477|gb|AEN02108.1| hypothetical protein MTCTRI2_3709 [Mycobacterium tuberculosis 
CTRI-2]
Length=64

 Score =  124 bits (310),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 63/64 (99%), Positives = 64/64 (100%), Gaps = 0/64 (0%)

Query  1   VFVQATELQKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRR  60
           +FVQATELQKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRR
Sbjct  1   MFVQATELQKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRR  60

Query  61  YNIQ  64
           YNIQ
Sbjct  61  YNIQ  64


>gi|118619387|ref|YP_907719.1| hypothetical protein MUL_4216 [Mycobacterium ulcerans Agy99]
 gi|118571497|gb|ABL06248.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=80

 Score =  114 bits (285),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 58/64 (91%), Positives = 59/64 (93%), Gaps = 0/64 (0%)

Query  1   VFVQATELQKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRR  60
           VFVQ TELQK KRR   VRATRRNTELEGTRSTAATRADQ+DYARGKITAAELGERVRRR
Sbjct  17  VFVQVTELQKAKRRIGTVRATRRNTELEGTRSTAATRADQDDYARGKITAAELGERVRRR  76

Query  61  YNIQ  64
           YNIQ
Sbjct  77  YNIQ  80


>gi|118466164|ref|YP_880704.1| hypothetical protein MAV_1462 [Mycobacterium avium 104]
 gi|118167451|gb|ABK68348.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=60

 Score = 84.0 bits (206),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 44/58 (76%), Positives = 50/58 (87%), Gaps = 0/58 (0%)

Query  6   TELQKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYNI  63
           TELQ+VKRR + VRA RR+TELEG+RST ATRADQ DYARG I AAEL +RVRRRYN+
Sbjct  2   TELQEVKRRVKAVRAVRRSTELEGSRSTNATRADQVDYARGTINAAELRDRVRRRYNM  59


>gi|120404611|ref|YP_954440.1| hypothetical protein Mvan_3643 [Mycobacterium vanbaalenii PYR-1]
 gi|119957429|gb|ABM14434.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=64

 Score = 83.2 bits (204),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 43/61 (71%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  3   VQATELQKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYN  62
           VQ TE+QK +RR + VRA RR+TELEG+RST ATRADQ+ Y  G ITAAEL +RVRRRYN
Sbjct  3   VQVTEVQKAQRRVKTVRAIRRSTELEGSRSTNATRADQDAYVSGTITAAELRDRVRRRYN  62

Query  63  I  63
           I
Sbjct  63  I  63


>gi|119855145|ref|YP_935750.1| hypothetical protein Mkms_5759 [Mycobacterium sp. KMS]
 gi|119697863|gb|ABL94935.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=60

 Score = 80.1 bits (196),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 41/58 (71%), Positives = 47/58 (82%), Gaps = 0/58 (0%)

Query  6   TELQKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYNI  63
           +E +K KRR + VRA RR++ELEG  STAATRADQ  YARG ITA ELGERVRRRYN+
Sbjct  2   SESEKAKRRVKAVRAIRRSSELEGASSTAATRADQLAYARGTITATELGERVRRRYNV  59


>gi|225352310|ref|ZP_03743333.1| hypothetical protein BIFPSEUDO_03926 [Bifidobacterium pseudocatenulatum 
DSM 20438]
 gi|225157557|gb|EEG70896.1| hypothetical protein BIFPSEUDO_03926 [Bifidobacterium pseudocatenulatum 
DSM 20438]
 gi|320457970|dbj|BAJ68591.1| hypothetical protein BLIJ_1001 [Bifidobacterium longum subsp. 
infantis ATCC 15697]
Length=63

 Score = 40.4 bits (93),  Expect = 0.094, Method: Compositional matrix adjust.
 Identities = 23/56 (42%), Positives = 33/56 (59%), Gaps = 0/56 (0%)

Query  9   QKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYNIQ  64
            +++RR  NV  + ++  LEG   T A   D  +YARG I +AEL  R RRRY ++
Sbjct  8   SEMRRRTENVGLSVQSVRLEGGDVTRAFIRDAGEYARGSIGSAELLSRTRRRYGLE  63


>gi|296454297|ref|YP_003661440.1| hypothetical protein BLJ_1159 [Bifidobacterium longum subsp. 
longum JDM301]
 gi|296183728|gb|ADH00610.1| hypothetical protein BLJ_1159 [Bifidobacterium longum subsp. 
longum JDM301]
Length=63

 Score = 39.7 bits (91),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 23/56 (42%), Positives = 33/56 (59%), Gaps = 0/56 (0%)

Query  9   QKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYNIQ  64
            +++RR  NV  + ++  LEG   T A   D  +YARG I +AEL  R RRRY ++
Sbjct  8   SEMRRRTENVGLSVQSVRLEGGDVTRAFIRDAGEYARGIIDSAELLSRTRRRYGLE  63


>gi|241191319|ref|YP_002968713.1| hypothetical protein Balac_1301 [Bifidobacterium animalis subsp. 
lactis Bl-04]
 gi|241196725|ref|YP_002970280.1| hypothetical protein Balat_1301 [Bifidobacterium animalis subsp. 
lactis DSM 10140]
 gi|240249711|gb|ACS46651.1| hypothetical protein Balac_1301 [Bifidobacterium animalis subsp. 
lactis Bl-04]
 gi|240251279|gb|ACS48218.1| hypothetical protein Balat_1301 [Bifidobacterium animalis subsp. 
lactis DSM 10140]
 gi|295794312|gb|ADG33847.1| hypothetical protein BalV_1259 [Bifidobacterium animalis subsp. 
lactis V9]
Length=62

 Score = 38.5 bits (88),  Expect = 0.37, Method: Compositional matrix adjust.
 Identities = 20/55 (37%), Positives = 27/55 (50%), Gaps = 0/55 (0%)

Query  10  KVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYNIQ  64
           K  R  RN+     + E+EG   +     + +DYA G I AA LG RV  RY + 
Sbjct  6   KAARNTRNLALALHSAEMEGGHVSDVLLHEAHDYANGLIDAATLGLRVCARYGLN  60


>gi|183602086|ref|ZP_02963454.1| hypothetical protein BIFLAC_07527 [Bifidobacterium animalis subsp. 
lactis HN019]
 gi|219683000|ref|YP_002469383.1| hypothetical protein BLA_0508 [Bifidobacterium animalis subsp. 
lactis AD011]
 gi|183218579|gb|EDT89222.1| hypothetical protein BIFLAC_07527 [Bifidobacterium animalis subsp. 
lactis HN019]
 gi|219620650|gb|ACL28807.1| hypothetical protein BLA_0508 [Bifidobacterium animalis subsp. 
lactis AD011]
 gi|345283175|gb|AEN77029.1| hypothetical protein BLC1_1258 [Bifidobacterium animalis subsp. 
lactis BLC1]
Length=71

 Score = 38.5 bits (88),  Expect = 0.38, Method: Compositional matrix adjust.
 Identities = 21/62 (34%), Positives = 29/62 (47%), Gaps = 0/62 (0%)

Query  3   VQATELQKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYN  62
           V+     K  R  RN+     + E+EG   +     + +DYA G I AA LG RV  RY 
Sbjct  8   VEMVRAAKAARNTRNLALALHSAEMEGGHVSDVLLHEAHDYANGLIDAATLGLRVCARYG  67

Query  63  IQ  64
           + 
Sbjct  68  LN  69


>gi|170780796|ref|YP_001709128.1| hypothetical protein CMS_0347 [Clavibacter michiganensis subsp. 
sepedonicus]
 gi|169155364|emb|CAQ00468.1| conserved hypothetical protein [Clavibacter michiganensis subsp. 
sepedonicus]
Length=63

 Score = 38.1 bits (87),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 20/46 (44%), Positives = 25/46 (55%), Gaps = 0/46 (0%)

Query  18  VRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYNI  63
           V     + E+EG   T +T  D  +Y  G+I A EL ERVR RY I
Sbjct  17  VEDAAHSGEMEGLHLTPSTSEDAGEYVAGRIDATELRERVRARYGI  62


>gi|310287722|ref|YP_003938980.1| hypothetical protein BBIF_1201 [Bifidobacterium bifidum S17]
 gi|313140516|ref|ZP_07802709.1| predicted protein [Bifidobacterium bifidum NCIMB 41171]
 gi|309251658|gb|ADO53406.1| Conserved hypothetical protein [Bifidobacterium bifidum S17]
 gi|313133026|gb|EFR50643.1| predicted protein [Bifidobacterium bifidum NCIMB 41171]
Length=63

 Score = 38.1 bits (87),  Expect = 0.41, Method: Compositional matrix adjust.
 Identities = 22/56 (40%), Positives = 31/56 (56%), Gaps = 0/56 (0%)

Query  9   QKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYNIQ  64
            +++RR  NV  + ++  LEG   T A   D  +YARG I   EL  R RRRY ++
Sbjct  8   SEMRRRTENVGLSVQSVRLEGGDVTRAFMRDAGEYARGTIDGTELLARTRRRYGLE  63


>gi|291457787|ref|ZP_06597177.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
 gi|291380840|gb|EFE88358.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
Length=63

 Score = 38.1 bits (87),  Expect = 0.46, Method: Compositional matrix adjust.
 Identities = 22/56 (40%), Positives = 31/56 (56%), Gaps = 0/56 (0%)

Query  9   QKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYNIQ  64
            +++RR  NV  + ++  LEG   T A   D  +YARG I   EL  R RRRY ++
Sbjct  8   SEMRRRTENVGLSVQSVRLEGGDVTRAFMRDAGEYARGTIDGTELLARTRRRYGLE  63



Lambda     K      H
   0.319    0.129    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130804070320


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40