BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3643

Length=63
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610779|ref|NP_218160.1|  hypothetical protein Rv3643 [Mycoba...   128    4e-28
gi|340628605|ref|YP_004747057.1|  hypothetical protein MCAN_36531...   125    3e-27
gi|15843255|ref|NP_338292.1|  hypothetical protein MT3746 [Mycoba...  69.7    1e-10
gi|118619389|ref|YP_907721.1|  hypothetical protein MUL_4218 [Myc...  68.2    4e-10
gi|255325881|ref|ZP_05366973.1|  phage integrase family protein [...  39.7    0.17 
gi|260904973|ref|ZP_05913295.1|  phage integrase family protein [...  38.5    0.37 
gi|311742638|ref|ZP_07716447.1|  integrase [Aeromicrobium marinum...  38.5    0.37 
gi|269956368|ref|YP_003326157.1|  integrase family protein [Xylan...  37.4    0.74 
gi|269955602|ref|YP_003325391.1|  integrase family protein [Xylan...  37.0    0.90 
gi|260904954|ref|ZP_05913276.1|  phage integrase family protein [...  37.0    0.99 
gi|116669908|ref|YP_830841.1|  phage integrase family protein [Ar...  35.0    3.3  
gi|306818603|ref|ZP_07452326.1|  possible integrase [Mobiluncus m...  33.9    7.3  
gi|269978227|ref|ZP_06185177.1|  phage integrase family protein [...  33.9    7.3  


>gi|15610779|ref|NP_218160.1| hypothetical protein Rv3643 [Mycobacterium tuberculosis H37Rv]
 gi|31794813|ref|NP_857306.1| hypothetical protein Mb3667 [Mycobacterium bovis AF2122/97]
 gi|121639556|ref|YP_979780.1| hypothetical protein BCG_3701 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 64 more sequence titles
 
gi|148663506|ref|YP_001285029.1| hypothetical protein MRA_3678 [Mycobacterium tuberculosis H37Ra]
 gi|167968565|ref|ZP_02550842.1| hypothetical protein MtubH3_11216 [Mycobacterium tuberculosis 
H37Ra]
 gi|224992053|ref|YP_002646742.1| hypothetical protein JTY_3702 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253800683|ref|YP_003033684.1| hypothetical protein TBMG_03682 [Mycobacterium tuberculosis KZN 
1435]
 gi|254233140|ref|ZP_04926466.1| hypothetical protein TBCG_03565 [Mycobacterium tuberculosis C]
 gi|254552755|ref|ZP_05143202.1| hypothetical protein Mtube_20285 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289441073|ref|ZP_06430817.1| hypothetical protein TBLG_01816 [Mycobacterium tuberculosis T46]
 gi|289445237|ref|ZP_06434981.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289555904|ref|ZP_06445114.1| hypothetical protein TBXG_03654 [Mycobacterium tuberculosis KZN 
605]
 gi|289571879|ref|ZP_06452106.1| hypothetical protein TBJG_02768 [Mycobacterium tuberculosis T17]
 gi|289572290|ref|ZP_06452517.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289747479|ref|ZP_06506857.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289748156|ref|ZP_06507534.1| hypothetical protein TBDG_00044 [Mycobacterium tuberculosis T92]
 gi|289763819|ref|ZP_06523197.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294995445|ref|ZP_06801136.1| hypothetical protein Mtub2_13265 [Mycobacterium tuberculosis 
210]
 gi|297636318|ref|ZP_06954098.1| hypothetical protein MtubK4_19430 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297733311|ref|ZP_06962429.1| hypothetical protein MtubKR_19565 [Mycobacterium tuberculosis 
KZN R506]
 gi|298527117|ref|ZP_07014526.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306777996|ref|ZP_07416333.1| hypothetical protein TMAG_00131 [Mycobacterium tuberculosis SUMu001]
 gi|306778528|ref|ZP_07416865.1| hypothetical protein TMBG_02178 [Mycobacterium tuberculosis SUMu002]
 gi|306786550|ref|ZP_07424872.1| hypothetical protein TMCG_01142 [Mycobacterium tuberculosis SUMu003]
 gi|306790916|ref|ZP_07429238.1| hypothetical protein TMDG_01374 [Mycobacterium tuberculosis SUMu004]
 gi|306791236|ref|ZP_07429538.1| hypothetical protein TMEG_00133 [Mycobacterium tuberculosis SUMu005]
 gi|306796023|ref|ZP_07434325.1| hypothetical protein TMFG_01579 [Mycobacterium tuberculosis SUMu006]
 gi|306801270|ref|ZP_07437938.1| hypothetical protein TMHG_02703 [Mycobacterium tuberculosis SUMu008]
 gi|306805484|ref|ZP_07442152.1| hypothetical protein TMGG_01181 [Mycobacterium tuberculosis SUMu007]
 gi|306969775|ref|ZP_07482436.1| hypothetical protein TMIG_03268 [Mycobacterium tuberculosis SUMu009]
 gi|306974114|ref|ZP_07486775.1| hypothetical protein TMJG_00891 [Mycobacterium tuberculosis SUMu010]
 gi|307081822|ref|ZP_07490992.1| hypothetical protein TMKG_00881 [Mycobacterium tuberculosis SUMu011]
 gi|313660643|ref|ZP_07817523.1| hypothetical protein MtubKV_19565 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339633635|ref|YP_004725277.1| hypothetical protein MAF_36500 [Mycobacterium africanum GM041182]
 gi|2105051|emb|CAB08844.1| HYPOTHETICAL PROTEIN Rv3643 [Mycobacterium tuberculosis H37Rv]
 gi|31620410|emb|CAD95853.1| HYPOTHETICAL PROTEIN Mb3667 [Mycobacterium bovis AF2122/97]
 gi|121495204|emb|CAL73690.1| Hypothetical protein BCG_3701 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|124602933|gb|EAY61208.1| hypothetical protein TBCG_03565 [Mycobacterium tuberculosis C]
 gi|148507658|gb|ABQ75467.1| hypothetical protein MRA_3678 [Mycobacterium tuberculosis H37Ra]
 gi|224775168|dbj|BAH27974.1| hypothetical protein JTY_3702 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253322186|gb|ACT26789.1| hypothetical protein TBMG_03682 [Mycobacterium tuberculosis KZN 
1435]
 gi|289413992|gb|EFD11232.1| hypothetical protein TBLG_01816 [Mycobacterium tuberculosis T46]
 gi|289418195|gb|EFD15396.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289440536|gb|EFD23029.1| hypothetical protein TBXG_03654 [Mycobacterium tuberculosis KZN 
605]
 gi|289536721|gb|EFD41299.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289545633|gb|EFD49281.1| hypothetical protein TBJG_02768 [Mycobacterium tuberculosis T17]
 gi|289688007|gb|EFD55495.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289688743|gb|EFD56172.1| hypothetical protein TBDG_00044 [Mycobacterium tuberculosis T92]
 gi|289711325|gb|EFD75341.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|298496911|gb|EFI32205.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308213707|gb|EFO73106.1| hypothetical protein TMAG_00131 [Mycobacterium tuberculosis SUMu001]
 gi|308328461|gb|EFP17312.1| hypothetical protein TMBG_02178 [Mycobacterium tuberculosis SUMu002]
 gi|308328872|gb|EFP17723.1| hypothetical protein TMCG_01142 [Mycobacterium tuberculosis SUMu003]
 gi|308332712|gb|EFP21563.1| hypothetical protein TMDG_01374 [Mycobacterium tuberculosis SUMu004]
 gi|308340205|gb|EFP29056.1| hypothetical protein TMEG_00133 [Mycobacterium tuberculosis SUMu005]
 gi|308343491|gb|EFP32342.1| hypothetical protein TMFG_01579 [Mycobacterium tuberculosis SUMu006]
 gi|308347991|gb|EFP36842.1| hypothetical protein TMGG_01181 [Mycobacterium tuberculosis SUMu007]
 gi|308351933|gb|EFP40784.1| hypothetical protein TMHG_02703 [Mycobacterium tuberculosis SUMu008]
 gi|308352693|gb|EFP41544.1| hypothetical protein TMIG_03268 [Mycobacterium tuberculosis SUMu009]
 gi|308356567|gb|EFP45418.1| hypothetical protein TMJG_00891 [Mycobacterium tuberculosis SUMu010]
 gi|308360525|gb|EFP49376.1| hypothetical protein TMKG_00881 [Mycobacterium tuberculosis SUMu011]
 gi|323717692|gb|EGB26893.1| hypothetical protein TMMG_00129 [Mycobacterium tuberculosis CDC1551A]
 gi|326905478|gb|EGE52411.1| hypothetical protein TBPG_03431 [Mycobacterium tuberculosis W-148]
 gi|328460413|gb|AEB05836.1| hypothetical protein TBSG_03707 [Mycobacterium tuberculosis KZN 
4207]
 gi|339332991|emb|CCC28719.1| hypothetical protein MAF_36500 [Mycobacterium africanum GM041182]
 gi|341603577|emb|CCC66258.1| hypothetical protein BCGM_3665 [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344221478|gb|AEN02109.1| hypothetical protein MTCTRI2_3710 [Mycobacterium tuberculosis 
CTRI-2]
Length=63

 Score =  128 bits (321),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 62/63 (99%), Positives = 63/63 (100%), Gaps = 0/63 (0%)

Query  1   VERSIGLEAAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYSRPIRAFRPLKSNRPGD  60
           +ERSIGLEAAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYSRPIRAFRPLKSNRPGD
Sbjct  1   MERSIGLEAAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYSRPIRAFRPLKSNRPGD  60

Query  61  IPT  63
           IPT
Sbjct  61  IPT  63


>gi|340628605|ref|YP_004747057.1| hypothetical protein MCAN_36531 [Mycobacterium canettii CIPT 
140010059]
 gi|340006795|emb|CCC45984.1| hypothetical protein MCAN_36531 [Mycobacterium canettii CIPT 
140010059]
Length=63

 Score =  125 bits (313),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 61/63 (97%), Positives = 62/63 (99%), Gaps = 0/63 (0%)

Query  1   VERSIGLEAAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYSRPIRAFRPLKSNRPGD  60
           +ERSIGL AAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYSRPIRAFRPLKSNRPGD
Sbjct  1   MERSIGLGAAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYSRPIRAFRPLKSNRPGD  60

Query  61  IPT  63
           IPT
Sbjct  61  IPT  63


>gi|15843255|ref|NP_338292.1| hypothetical protein MT3746 [Mycobacterium tuberculosis CDC1551]
 gi|13883612|gb|AAK48106.1| hypothetical protein MT3746 [Mycobacterium tuberculosis CDC1551]
Length=33

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 32/33 (97%), Positives = 33/33 (100%), Gaps = 0/33 (0%)

Query  31  VTVPDYTAALDEYSRPIRAFRPLKSNRPGDIPT  63
           +TVPDYTAALDEYSRPIRAFRPLKSNRPGDIPT
Sbjct  1   MTVPDYTAALDEYSRPIRAFRPLKSNRPGDIPT  33


>gi|118619389|ref|YP_907721.1| hypothetical protein MUL_4218 [Mycobacterium ulcerans Agy99]
 gi|118571499|gb|ABL06250.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=51

 Score = 68.2 bits (165),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 33/39 (85%), Positives = 37/39 (95%), Gaps = 0/39 (0%)

Query  1   VERSIGLEAAAQQAGHSGSEITRRHYVERSVTVPDYTAA  39
           VER+IGLEA+A+QAGHS SEITRRHYVE+SV VPDYTAA
Sbjct  13  VERAIGLEASARQAGHSSSEITRRHYVEQSVPVPDYTAA  51


>gi|255325881|ref|ZP_05366973.1| phage integrase family protein [Corynebacterium tuberculostearicum 
SK141]
 gi|255297093|gb|EET76418.1| phage integrase family protein [Corynebacterium tuberculostearicum 
SK141]
Length=394

 Score = 39.7 bits (91),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 18/44 (41%), Positives = 29/44 (66%), Gaps = 0/44 (0%)

Query  1    VERSIGLEAAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYS  44
            +E   G+E AA+Q GH+   IT R+YV+R+    D+TA L+ ++
Sbjct  345  IENVDGVEEAARQLGHASPAITGRYYVKRAADAGDHTAVLEMFA  388


>gi|260904973|ref|ZP_05913295.1| phage integrase family protein [Brevibacterium linens BL2]
Length=393

 Score = 38.5 bits (88),  Expect = 0.37, Method: Compositional matrix adjust.
 Identities = 16/28 (58%), Positives = 23/28 (83%), Gaps = 0/28 (0%)

Query  1    VERSIGLEAAAQQAGHSGSEITRRHYVE  28
            ++R  GLEAA++QAGHS + +T RHYV+
Sbjct  338  LQRVRGLEAASEQAGHSDTAVTSRHYVQ  365


>gi|311742638|ref|ZP_07716447.1| integrase [Aeromicrobium marinum DSM 15272]
 gi|311314266|gb|EFQ84174.1| integrase [Aeromicrobium marinum DSM 15272]
Length=274

 Score = 38.5 bits (88),  Expect = 0.37, Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 19/32 (60%), Gaps = 0/32 (0%)

Query  8    EAAAQQAGHSGSEITRRHYVERSVTVPDYTAA  39
            EAA    GH+   IT RHY+ R + VPDY  A
Sbjct  225  EAAMHHLGHTSKVITERHYINRKLVVPDYREA  256


>gi|269956368|ref|YP_003326157.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269305049|gb|ACZ30599.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
Length=422

 Score = 37.4 bits (85),  Expect = 0.74, Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 23/28 (83%), Gaps = 0/28 (0%)

Query  1    VERSIGLEAAAQQAGHSGSEITRRHYVE  28
            V+R++G++ AA+  GH+ +EITR HY+E
Sbjct  347  VDRAVGIDLAAELLGHTTTEITRVHYIE  374


>gi|269955602|ref|YP_003325391.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269304283|gb|ACZ29833.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894]
Length=401

 Score = 37.0 bits (84),  Expect = 0.90, Method: Compositional matrix adjust.
 Identities = 20/46 (44%), Positives = 27/46 (59%), Gaps = 0/46 (0%)

Query  1    VERSIGLEAAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYSRP  46
            VER+ G + AA+  GH+ S IT+ HY+ER   V   TA + E   P
Sbjct  346  VERAAGADLAAELLGHTSSSITKEHYIERDDHVDARTAEILEALGP  391


>gi|260904954|ref|ZP_05913276.1| phage integrase family protein [Brevibacterium linens BL2]
Length=405

 Score = 37.0 bits (84),  Expect = 0.99, Method: Compositional matrix adjust.
 Identities = 13/29 (45%), Positives = 21/29 (73%), Gaps = 0/29 (0%)

Query  15   GHSGSEITRRHYVERSVTVPDYTAALDEY  43
            GHSG+ +T  HYV ++ T PD ++ LD++
Sbjct  368  GHSGTGVTSAHYVAKAATAPDMSSILDQF  396


>gi|116669908|ref|YP_830841.1| phage integrase family protein [Arthrobacter sp. FB24]
 gi|116610017|gb|ABK02741.1| phage integrase family protein [Arthrobacter sp. FB24]
Length=374

 Score = 35.0 bits (79),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 13/31 (42%), Positives = 20/31 (65%), Gaps = 0/31 (0%)

Query  13   QAGHSGSEITRRHYVERSVTVPDYTAALDEY  43
            Q GHS   +TR+HYV+++   PD T  L+ +
Sbjct  339  QLGHSSENVTRKHYVQKTHEAPDNTVLLEAF  369


>gi|306818603|ref|ZP_07452326.1| possible integrase [Mobiluncus mulieris ATCC 35239]
 gi|304648776|gb|EFM46078.1| possible integrase [Mobiluncus mulieris ATCC 35239]
Length=396

 Score = 33.9 bits (76),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 16/44 (37%), Positives = 24/44 (55%), Gaps = 0/44 (0%)

Query  1    VERSIGLEAAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYS  44
            ++R   ++ AA   GHS  EITR +YVE+    PD    L  ++
Sbjct  346  IKRESSMKDAAAVLGHSSPEITRTYYVEKENIAPDMRQVLARFA  389


>gi|269978227|ref|ZP_06185177.1| phage integrase family protein [Mobiluncus mulieris 28-1]
 gi|269933736|gb|EEZ90320.1| phage integrase family protein [Mobiluncus mulieris 28-1]
Length=396

 Score = 33.9 bits (76),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 16/44 (37%), Positives = 24/44 (55%), Gaps = 0/44 (0%)

Query  1    VERSIGLEAAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYS  44
            ++R   ++ AA   GHS  EITR +YVE+    PD    L  ++
Sbjct  346  IKRESSMKDAAAVLGHSSPEITRTYYVEKENIAPDMRQVLARFA  389



Lambda     K      H
   0.314    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131230491224


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40