BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3644c Length=401 Score E Sequences producing significant alignments: (Bits) Value gi|15610780|ref|NP_218161.1| DNA polymerase III subunit delta' [... 788 0.0 gi|253800684|ref|YP_003033685.1| DNA polymerase [Mycobacterium t... 788 0.0 gi|15843256|ref|NP_338293.1| DNA polymerase III subunit delta' [... 788 0.0 gi|254366194|ref|ZP_04982238.1| hypothetical DNA polymerase [Myc... 786 0.0 gi|339296455|gb|AEJ48566.1| DNA polymerase III subunit delta' [M... 781 0.0 gi|340628616|ref|YP_004747068.1| putative DNA polymerase [Mycoba... 781 0.0 gi|289763821|ref|ZP_06523199.1| DNA polymerase III subunit delta... 692 0.0 gi|108801757|ref|YP_641954.1| DNA polymerase III subunit delta' ... 630 1e-178 gi|126437744|ref|YP_001073435.1| DNA polymerase III subunit delt... 630 1e-178 gi|296166699|ref|ZP_06849124.1| DNA-directed DNA polymerase III ... 622 2e-176 gi|145221988|ref|YP_001132666.1| DNA polymerase III subunit delt... 620 1e-175 gi|315446272|ref|YP_004079151.1| DNA polymerase III delta prime ... 619 2e-175 gi|118619390|ref|YP_907722.1| DNA polymerase III subunit delta' ... 603 1e-170 gi|336460890|gb|EGO39774.1| DNA polymerase III, delta'' subunit ... 603 2e-170 gi|183985104|ref|YP_001853395.1| hypothetical protein MMAR_5136 ... 602 3e-170 gi|120406342|ref|YP_956171.1| DNA polymerase III subunit delta' ... 602 5e-170 gi|342862019|ref|ZP_08718663.1| DNA polymerase III subunit delta... 600 2e-169 gi|41406525|ref|NP_959361.1| DNA polymerase III subunit delta' [... 599 3e-169 gi|118469832|ref|YP_890373.1| DNA polymerase III subunit delta' ... 588 5e-166 gi|118465813|ref|YP_879801.1| DNA polymerase III subunit delta' ... 574 7e-162 gi|15827007|ref|NP_301270.1| DNA polymerase III subunit delta' [... 566 3e-159 gi|289759799|ref|ZP_06519177.1| DNA polymerase III subunit delta... 546 2e-153 gi|333992569|ref|YP_004525183.1| DNA polymerase III subunit delt... 545 6e-153 gi|169627595|ref|YP_001701244.1| DNA polymerase III subunit delt... 544 8e-153 gi|226363674|ref|YP_002781456.1| DNA polymerase III subunit delt... 502 4e-140 gi|111021330|ref|YP_704302.1| DNA polymerase III subunit delta' ... 501 6e-140 gi|312138020|ref|YP_004005356.1| DNA polymerase III delta' subun... 490 2e-136 gi|325675217|ref|ZP_08154902.1| DNA-directed DNA polymerase III ... 490 2e-136 gi|254773489|ref|ZP_05215005.1| DNA polymerase III subunit delta... 486 4e-135 gi|343926498|ref|ZP_08766003.1| DNA polymerase III delta' subuni... 474 8e-132 gi|226304003|ref|YP_002763961.1| DNA polymerase III delta' subun... 468 7e-130 gi|229494803|ref|ZP_04388559.1| DNA polymerase III subunit delta... 467 2e-129 gi|262200591|ref|YP_003271799.1| DNA polymerase III subunit delt... 457 1e-126 gi|54022332|ref|YP_116574.1| DNA polymerase III subunit delta' [... 456 3e-126 gi|326383462|ref|ZP_08205149.1| DNA polymerase III subunit delta... 451 1e-124 gi|333917974|ref|YP_004491555.1| DNA-directed DNA polymerase III... 444 2e-122 gi|296141545|ref|YP_003648788.1| DNA polymerase III subunit delt... 429 4e-118 gi|302530809|ref|ZP_07283151.1| DNA polymerase III [Streptomyces... 423 2e-116 gi|300790591|ref|YP_003770882.1| DNA polymerase III subunit delt... 410 2e-112 gi|257057528|ref|YP_003135360.1| DNA polymerase III, delta prime... 400 3e-109 gi|134096992|ref|YP_001102653.1| DNA polymerase III, delta' subu... 396 3e-108 gi|319951222|ref|ZP_08025060.1| DNA polymerase III subunit delta... 392 5e-107 gi|254821838|ref|ZP_05226839.1| DNA polymerase III subunit delta... 382 6e-104 gi|258650990|ref|YP_003200146.1| DNA-directed DNA polymerase [Na... 377 2e-102 gi|256374449|ref|YP_003098109.1| DNA-directed DNA polymerase [Ac... 373 3e-101 gi|324997955|ref|ZP_08119067.1| DNA polymerase III, delta' subun... 369 4e-100 gi|291298370|ref|YP_003509648.1| DNA polymerase III subunit delt... 360 2e-97 gi|145596533|ref|YP_001160830.1| DNA polymerase III subunit delt... 358 8e-97 gi|237786522|ref|YP_002907227.1| DNA polymerase III subunit delt... 355 5e-96 gi|334564237|ref|ZP_08517228.1| DNA polymerase III subunit delta... 355 9e-96 >gi|15610780|ref|NP_218161.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis H37Rv] gi|31794814|ref|NP_857307.1| DNA polymerase III subunit delta' [Mycobacterium bovis AF2122/97] gi|121639557|ref|YP_979781.1| DNA polymerase III subunit delta' [Mycobacterium bovis BCG str. Pasteur 1173P2] 37 more sequence titles Length=401 Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF Sbjct 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG Sbjct 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV Sbjct 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA Sbjct 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK Sbjct 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA Sbjct 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR Sbjct 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 >gi|253800684|ref|YP_003033685.1| DNA polymerase [Mycobacterium tuberculosis KZN 1435] gi|289747480|ref|ZP_06506858.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis 02_1987] gi|308232519|ref|ZP_07416334.2| DNA polymerase [Mycobacterium tuberculosis SUMu001] 26 more sequence titles Length=402 Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF Sbjct 2 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 61 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG Sbjct 62 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 121 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV Sbjct 122 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 181 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA Sbjct 182 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 241 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK Sbjct 242 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 301 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA Sbjct 302 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 361 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR Sbjct 362 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 402 >gi|15843256|ref|NP_338293.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis CDC1551] gi|13883613|gb|AAK48107.1| DNA polymerase III, delta' subunit [Mycobacterium tuberculosis CDC1551] gi|339300056|gb|AEJ52166.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis CCDC5180] Length=404 Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF Sbjct 4 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 63 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG Sbjct 64 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 123 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV Sbjct 124 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 183 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA Sbjct 184 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 243 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK Sbjct 244 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 303 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA Sbjct 304 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 363 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR Sbjct 364 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 404 >gi|254366194|ref|ZP_04982238.1| hypothetical DNA polymerase [Mycobacterium tuberculosis str. Haarlem] gi|134151706|gb|EBA43751.1| hypothetical DNA polymerase [Mycobacterium tuberculosis str. Haarlem] Length=401 Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/401 (99%), Positives = 400/401 (99%), Gaps = 0/401 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF Sbjct 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG Sbjct 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV Sbjct 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPSTHAIAQVLSDGDGLDPDT NWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA Sbjct 181 TPSTHAIAQVLSDGDGLDPDTGNWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK Sbjct 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA Sbjct 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR Sbjct 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 >gi|339296455|gb|AEJ48566.1| DNA polymerase III subunit delta' [Mycobacterium tuberculosis CCDC5079] Length=398 Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/398 (99%), Positives = 398/398 (100%), Gaps = 0/398 (0%) Query 4 VFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAA 63 +FTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAA Sbjct 1 MFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAA 60 Query 64 LQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHWQ 123 LQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHWQ Sbjct 61 LQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHWQ 120 Query 124 IVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPS 183 IVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPS Sbjct 121 IVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPS 180 Query 184 THAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATPS 243 THAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATPS Sbjct 181 THAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATPS 240 Query 244 RAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDLE 303 RAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDLE Sbjct 241 RAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDLE 300 Query 304 RRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPPE 363 RRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPPE Sbjct 301 RRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPPE 360 Query 364 RLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 RLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR Sbjct 361 RLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 398 >gi|340628616|ref|YP_004747068.1| putative DNA polymerase [Mycobacterium canettii CIPT 140010059] gi|340006806|emb|CCC45995.1| putative DNA polymerase [Mycobacterium canettii CIPT 140010059] Length=401 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/401 (99%), Positives = 398/401 (99%), Gaps = 0/401 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVFTRLVGQQAVEAELLATAKAARRDSAHS GGGGTMTHAWLLTGPPGSGRSVAALCF Sbjct 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSVGGGGTMTHAWLLTGPPGSGRSVAALCF 60 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG Sbjct 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV Sbjct 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATD QARQRRERALGLARDAA Sbjct 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDLQARQRRERALGLARDAA 240 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRG TGAMK Sbjct 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGVTGAMK 300 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA Sbjct 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR Sbjct 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 >gi|289763821|ref|ZP_06523199.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis GM 1503] gi|289711327|gb|EFD75343.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis GM 1503] Length=354 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/352 (100%), Positives = 352/352 (100%), Gaps = 0/352 (0%) Query 50 GSGRSVAALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAI 109 GSGRSVAALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAI Sbjct 3 GSGRSVAALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAI 62 Query 110 VQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVT 169 VQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVT Sbjct 63 VQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVT 122 Query 170 LRSRCRHVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRR 229 LRSRCRHVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRR Sbjct 123 LRSRCRHVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRR 182 Query 230 ERALGLARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTG 289 ERALGLARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTG Sbjct 183 ERALGLARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTG 242 Query 290 AALRGATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDM 349 AALRGATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDM Sbjct 243 AALRGATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDM 302 Query 350 ADRVAALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 ADRVAALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR Sbjct 303 ADRVAALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 354 >gi|108801757|ref|YP_641954.1| DNA polymerase III subunit delta' [Mycobacterium sp. MCS] gi|119870908|ref|YP_940860.1| DNA polymerase III subunit delta' [Mycobacterium sp. KMS] gi|108772176|gb|ABG10898.1| DNA polymerase III, delta prime subunit [Mycobacterium sp. MCS] gi|119696997|gb|ABL94070.1| DNA polymerase III, delta prime subunit [Mycobacterium sp. KMS] Length=402 Score = 630 bits (1626), Expect = 1e-178, Method: Compositional matrix adjust. Identities = 333/401 (84%), Positives = 361/401 (91%), Gaps = 0/401 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 M+GVF+RLVGQ AVEAEL+ A+AAR D+AHSA GTMTHAWL+TGPPGSGRS+AALCF Sbjct 1 MAGVFSRLVGQHAVEAELVGAAQAARGDAAHSASATGTMTHAWLITGPPGSGRSIAALCF 60 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCTS G PGCG CRACTTT+AGTHADVRR+IPEGLSIGVDEMR+IVQIA+RRP TG Sbjct 61 AAALQCTSEGVPGCGECRACTTTMAGTHADVRRIIPEGLSIGVDEMRSIVQIASRRPGTG 120 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 WQIVV+EDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIA+TLRSRCRH+ALV Sbjct 121 RWQIVVVEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHIALV 180 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPS AI QVL +GDG+ A WAASVSGGHVGRARRL D QAR RR+RAL LARDAA Sbjct 181 TPSVDAITQVLIEGDGMSEQEARWAASVSGGHVGRARRLVVDEQARDRRKRALSLARDAA 240 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TPSRAYAAAEELVA AEAEA ALT R E E EELRTALGAGGTGKGT +RGATGA++ Sbjct 241 TPSRAYAAAEELVASAEAEAKALTVDRNETEAEELRTALGAGGTGKGTAGTMRGATGAIR 300 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 DLE+RQKSRQTRASRDALDRALIDLATYFRDALLV++ AG V+ANHPDMA++VAALAAHA Sbjct 301 DLEKRQKSRQTRASRDALDRALIDLATYFRDALLVSSGAGHVQANHPDMAEKVAALAAHA 360 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 PPE+LLRCIEAVL CREALAVNVKPKFAVDAMVAT+GQ LR Sbjct 361 PPEKLLRCIEAVLECREALAVNVKPKFAVDAMVATVGQALR 401 >gi|126437744|ref|YP_001073435.1| DNA polymerase III subunit delta' [Mycobacterium sp. JLS] gi|126237544|gb|ABO00945.1| DNA polymerase III, delta prime subunit [Mycobacterium sp. JLS] Length=402 Score = 630 bits (1625), Expect = 1e-178, Method: Compositional matrix adjust. Identities = 334/401 (84%), Positives = 361/401 (91%), Gaps = 0/401 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 M+GVF+RLVGQ AVEAEL+ A+AAR D+AHSA GTMTHAWL+TGPPGSGRS+AALCF Sbjct 1 MAGVFSRLVGQHAVEAELVGAAQAARGDAAHSASATGTMTHAWLITGPPGSGRSIAALCF 60 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCTS G PGCG CRACTTT+AGTHADVRR+IPEGLSIGVDEMR+IVQIA+RRP TG Sbjct 61 AAALQCTSEGVPGCGDCRACTTTMAGTHADVRRIIPEGLSIGVDEMRSIVQIASRRPGTG 120 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 WQIVV+EDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIA+TLRSRCRHVALV Sbjct 121 RWQIVVVEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHVALV 180 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPS AI QVL +GDG+ A WAASVSGGHVGRARRL D QAR RR+RAL LARDAA Sbjct 181 TPSVDAITQVLIEGDGMSEQEARWAASVSGGHVGRARRLVVDEQARDRRKRALSLARDAA 240 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TPSRAYAAAEELVA AEAEA ALT R E E EELRTALGAGGTGKGT +RGATGA++ Sbjct 241 TPSRAYAAAEELVASAEAEAKALTVDRNETEAEELRTALGAGGTGKGTAGTMRGATGAIR 300 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 DLE+RQKSRQTRASRDALDRALIDLATYFRDALLV++ AG V+ANHPDMA++VAALAAHA Sbjct 301 DLEKRQKSRQTRASRDALDRALIDLATYFRDALLVSSGAGHVQANHPDMAEKVAALAAHA 360 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 PPE+LLRCIEAVL CREALAVNVKPKFAVDAMVAT+GQ LR Sbjct 361 PPEKLLRCIEAVLECREALAVNVKPKFAVDAMVATVGQALR 401 >gi|296166699|ref|ZP_06849124.1| DNA-directed DNA polymerase III subunit delta' [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897964|gb|EFG77545.1| DNA-directed DNA polymerase III subunit delta' [Mycobacterium parascrofulaceum ATCC BAA-614] Length=406 Score = 622 bits (1605), Expect = 2e-176, Method: Compositional matrix adjust. Identities = 349/404 (87%), Positives = 365/404 (91%), Gaps = 3/404 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVFTRLVGQ AV AELLA A+AAR D HS G GTMTHAWL+TGPPGSGRSVAALCF Sbjct 2 MSGVFTRLVGQDAVTAELLAAARAARGDPVHSEAGAGTMTHAWLITGPPGSGRSVAALCF 61 Query 61 AAALQCTSG---GEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRP 117 AAALQCTS G PGCG CRACTTT+AGTHADVRRVIPEGLSIGVDEMRAIVQIA+RRP Sbjct 62 AAALQCTSAVEDGGPGCGNCRACTTTMAGTHADVRRVIPEGLSIGVDEMRAIVQIASRRP 121 Query 118 TTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHV 177 TGH QIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIA+TLRSRCRHV Sbjct 122 ATGHRQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHV 181 Query 178 ALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLAR 237 ALVTP T AIA+VL D DGL P+TA+WAASVSGGHVGRARRLATDP+AR RRERAL L R Sbjct 182 ALVTPPTEAIARVLIDSDGLSPETADWAASVSGGHVGRARRLATDPEARDRRERALALVR 241 Query 238 DAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATG 297 DAATPSRAYAAAEELVA AEAEA+ LTA R EAETEELRTALGAGGTGKGT A+RGA G Sbjct 242 DAATPSRAYAAAEELVASAEAEAVVLTADRAEAETEELRTALGAGGTGKGTAGAMRGAAG 301 Query 298 AMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALA 357 AMKDLERRQKSRQTRASRDALDRALIDLATYFRDAL+V+A A VRANHPDMA+RV+ALA Sbjct 302 AMKDLERRQKSRQTRASRDALDRALIDLATYFRDALMVSAGAASVRANHPDMAERVSALA 361 Query 358 AHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 AHA P RLLRCIEAVL CREALA+NVKPKFAVDAMVAT GQELR Sbjct 362 AHASPPRLLRCIEAVLECREALAMNVKPKFAVDAMVATFGQELR 405 >gi|145221988|ref|YP_001132666.1| DNA polymerase III subunit delta' [Mycobacterium gilvum PYR-GCK] gi|145214474|gb|ABP43878.1| DNA polymerase III, delta prime subunit [Mycobacterium gilvum PYR-GCK] Length=404 Score = 620 bits (1599), Expect = 1e-175, Method: Compositional matrix adjust. Identities = 334/403 (83%), Positives = 358/403 (89%), Gaps = 2/403 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHS--AGGGGTMTHAWLLTGPPGSGRSVAAL 58 M+GVF+RLVGQ VEAEL+A A+AAR DS H GTMTHAWL+TGPPGSGRS+AAL Sbjct 1 MAGVFSRLVGQDTVEAELIAAARAARGDSVHDDDPAETGTMTHAWLITGPPGSGRSIAAL 60 Query 59 CFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPT 118 CFAAALQCTS G PGCG CRACTTT+AGTHADVRR+IPEGLSIGVD MRAIVQIA+RRP Sbjct 61 CFAAALQCTSEGRPGCGECRACTTTMAGTHADVRRIIPEGLSIGVDAMRAIVQIASRRPG 120 Query 119 TGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVA 178 TG WQIVV+EDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIA+TLRSRCRHVA Sbjct 121 TGRWQIVVVEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHVA 180 Query 179 LVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARD 238 LVTP AIAQVL D DGL A WAASVSGGHVGRARRLATD +AR+RR+RALGLARD Sbjct 181 LVTPPVEAIAQVLIDADGLSAAEARWAASVSGGHVGRARRLATDDEARERRKRALGLARD 240 Query 239 AATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGA 298 AATPSRAYAAAEELVA AEAEA ALT R EAE+EELRTALGAGGTGKGT +RGA GA Sbjct 241 AATPSRAYAAAEELVATAEAEAKALTGDRNEAESEELRTALGAGGTGKGTAGTMRGAAGA 300 Query 299 MKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAA 358 +K+LE+RQKSRQTRASRDALDRALIDLATYFRDALLV+A A V ANHPDMAD+VAALAA Sbjct 301 LKELEKRQKSRQTRASRDALDRALIDLATYFRDALLVSAGATDVVANHPDMADKVAALAA 360 Query 359 HAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 HAPP++LLRCIEAVL CREALAVNVKPKFAVDAMV T+GQ LR Sbjct 361 HAPPDKLLRCIEAVLECREALAVNVKPKFAVDAMVGTVGQALR 403 >gi|315446272|ref|YP_004079151.1| DNA polymerase III delta prime subunit [Mycobacterium sp. Spyr1] gi|315264575|gb|ADU01317.1| DNA polymerase III, delta prime subunit [Mycobacterium sp. Spyr1] Length=403 Score = 619 bits (1596), Expect = 2e-175, Method: Compositional matrix adjust. Identities = 335/403 (84%), Positives = 359/403 (90%), Gaps = 3/403 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHS--AGGGGTMTHAWLLTGPPGSGRSVAAL 58 M+GVF+RLVGQ VEAEL+A A+AAR DS H GTMTHAWL+TGPPGSGRS+AAL Sbjct 1 MAGVFSRLVGQDTVEAELIAAARAARGDSVHDDDPAETGTMTHAWLITGPPGSGRSIAAL 60 Query 59 CFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPT 118 CFAAALQCTS G PGCG CRACTTT+AGTHADVRR+IPEGLSIGVD MRAIVQIA+RRP Sbjct 61 CFAAALQCTSEGRPGCGECRACTTTMAGTHADVRRIIPEGLSIGVDAMRAIVQIASRRPG 120 Query 119 TGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVA 178 TG WQIVV+EDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIA+TLRSRCRHVA Sbjct 121 TGRWQIVVVEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHVA 180 Query 179 LVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARD 238 LVTP AIAQVL DGL PD A WAASVSGGHVGRARRLATD +AR+RR+RALGLARD Sbjct 181 LVTPPADAIAQVLI-ADGLSPDEARWAASVSGGHVGRARRLATDDEARERRKRALGLARD 239 Query 239 AATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGA 298 AATPSRAYAAAEELVA AEAEA ALT R EAE+EELRTALGAGGTGKGT +RGA GA Sbjct 240 AATPSRAYAAAEELVATAEAEAKALTGDRNEAESEELRTALGAGGTGKGTAGTMRGAAGA 299 Query 299 MKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAA 358 +K+LE+RQKSRQTRASRDALDRALIDLATYFRDALLV+A A V ANHPDMAD+VAALAA Sbjct 300 LKELEKRQKSRQTRASRDALDRALIDLATYFRDALLVSAGATDVVANHPDMADKVAALAA 359 Query 359 HAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 HAPP++LLRCIEAVL CREALAVNVKPKFAVDAMV T+GQ LR Sbjct 360 HAPPDKLLRCIEAVLECREALAVNVKPKFAVDAMVGTVGQALR 402 >gi|118619390|ref|YP_907722.1| DNA polymerase III subunit delta' [Mycobacterium ulcerans Agy99] gi|118571500|gb|ABL06251.1| conserved protein [Mycobacterium ulcerans Agy99] Length=401 Score = 603 bits (1556), Expect = 1e-170, Method: Compositional matrix adjust. Identities = 342/401 (86%), Positives = 366/401 (92%), Gaps = 0/401 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVF RLVGQ AVE+ELLA A++AR DS HS+G G MTHAWL+TGPPGSGRS+AALCF Sbjct 1 MSGVFARLVGQGAVESELLAAARSARSDSTHSSGFDGDMTHAWLITGPPGSGRSIAALCF 60 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCTS G+PGCGRCR+C TT+AGTHADVRRVIPEGLSIGVD+MRAIVQIA+RRPTTG Sbjct 61 AAALQCTSDGDPGCGRCRSCLTTMAGTHADVRRVIPEGLSIGVDDMRAIVQIASRRPTTG 120 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 QIV+IEDADRLTEGAANALLKVVEEPP STVFLLCAPSVDPEDIAVTLRSRCRHVALV Sbjct 121 RHQIVLIEDADRLTEGAANALLKVVEEPPASTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TP T AIAQVL D DGL +TANWAASVSGGHVGRARRLATDP+ARQRRERALGL RDAA Sbjct 181 TPPTTAIAQVLIDNDGLAAETANWAASVSGGHVGRARRLATDPEARQRRERALGLVRDAA 240 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TP+RAYAAAEELVA AEAEALALT+ R EAETEELRTALGAGGTGKGT +RG+ GA+K Sbjct 241 TPARAYAAAEELVAAAEAEALALTSDRAEAETEELRTALGAGGTGKGTAGTMRGSAGAIK 300 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 DLERRQKSR TRA+RDALDRALIDLATYFRDALLV+A A RANHPDMADRVAALAAHA Sbjct 301 DLERRQKSRHTRAARDALDRALIDLATYFRDALLVSAKADQPRANHPDMADRVAALAAHA 360 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 PERLLRCIEAVL CREAL++NVKPKFAVDAMVA IGQ+LR Sbjct 361 TPERLLRCIEAVLNCREALSINVKPKFAVDAMVAAIGQQLR 401 >gi|336460890|gb|EGO39774.1| DNA polymerase III, delta'' subunit [Mycobacterium avium subsp. paratuberculosis S397] Length=401 Score = 603 bits (1555), Expect = 2e-170, Method: Compositional matrix adjust. Identities = 352/400 (88%), Positives = 374/400 (94%), Gaps = 0/400 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVFTRLVGQ AV+AELL A+AAR D+ HS G GTMTHAWL+TGPPGSGRSVAALCF Sbjct 1 MSGVFTRLVGQDAVKAELLGAARAARGDAGHSDAGAGTMTHAWLITGPPGSGRSVAALCF 60 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCT+ GEPGCGRC ACTTTLAGTHADVRRV+PEGLSIGVDEMRAIVQIAARRP TG Sbjct 61 AAALQCTADGEPGCGRCHACTTTLAGTHADVRRVVPEGLSIGVDEMRAIVQIAARRPATG 120 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 +WQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPED+A+TLRSRCRHVALV Sbjct 121 NWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDVAITLRSRCRHVALV 180 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPST AIA+VL D DGL P+TA+WAASVSGGHVGRARRLATDP+ARQRRERALGL RDAA Sbjct 181 TPSTEAIARVLVDSDGLTPETADWAASVSGGHVGRARRLATDPEARQRRERALGLVRDAA 240 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TPSRAYAAAEELVA AEAEA+ LTA+R EAETEELRTALGAGGTGKGT A+RGA GA+K Sbjct 241 TPSRAYAAAEELVAAAEAEAVVLTAERAEAETEELRTALGAGGTGKGTAGAMRGAAGAIK 300 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 DLERRQKSRQTRASRDALDRALIDLATYFRDAL+ ++ AG VRANHPDMA+RVAALAAHA Sbjct 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALMASSGAGAVRANHPDMAERVAALAAHA 360 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQEL 400 PPERLLRCIEAVL CREALAVNVKPKFAVDAMVATIGQ+L Sbjct 361 PPERLLRCIEAVLECREALAVNVKPKFAVDAMVATIGQQL 400 >gi|183985104|ref|YP_001853395.1| hypothetical protein MMAR_5136 [Mycobacterium marinum M] gi|183178430|gb|ACC43540.1| conserved protein [Mycobacterium marinum M] Length=405 Score = 602 bits (1553), Expect = 3e-170, Method: Compositional matrix adjust. Identities = 341/401 (86%), Positives = 366/401 (92%), Gaps = 0/401 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVF RLVGQ AVE+ELLA A++AR DS HS+G G MTHAWL+TGPPGSGRS+AALCF Sbjct 5 MSGVFARLVGQGAVESELLAAARSARSDSTHSSGFDGDMTHAWLITGPPGSGRSIAALCF 64 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCTS G+PGCGRCR+C TT+AGTHADVRRVIPEGLSIGVD+MRAIVQIA+RRPTTG Sbjct 65 AAALQCTSDGDPGCGRCRSCLTTMAGTHADVRRVIPEGLSIGVDDMRAIVQIASRRPTTG 124 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 QIV+IEDADRLTEGAANALLKVVEEPP STVFLLCAPSVDPEDIAVTLRSRCRHVALV Sbjct 125 RHQIVLIEDADRLTEGAANALLKVVEEPPASTVFLLCAPSVDPEDIAVTLRSRCRHVALV 184 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TP T AIAQVL D DGL +TANWAASVSGGHVGRARRLATDP+ARQRRERALGL RDAA Sbjct 185 TPPTTAIAQVLIDNDGLAAETANWAASVSGGHVGRARRLATDPEARQRRERALGLVRDAA 244 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TP+RAYAAAEELVA AEAEALALT+ R EAETEELRTALGAGGTGKGT +RG+ GA+K Sbjct 245 TPARAYAAAEELVAAAEAEALALTSDRAEAETEELRTALGAGGTGKGTAGTMRGSAGAIK 304 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 DLERRQKSR TRA+RDALDRALIDLATYFRDALLV+A A RANHPDMADRVAALAAHA Sbjct 305 DLERRQKSRHTRAARDALDRALIDLATYFRDALLVSAKADQPRANHPDMADRVAALAAHA 364 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 PERLLRCIEAVL CREAL++NVKPKFAVDAMVA IGQ+L+ Sbjct 365 TPERLLRCIEAVLNCREALSINVKPKFAVDAMVAAIGQQLQ 405 >gi|120406342|ref|YP_956171.1| DNA polymerase III subunit delta' [Mycobacterium vanbaalenii PYR-1] gi|119959160|gb|ABM16165.1| DNA polymerase III, delta prime subunit [Mycobacterium vanbaalenii PYR-1] Length=407 Score = 602 bits (1551), Expect = 5e-170, Method: Compositional matrix adjust. Identities = 328/406 (81%), Positives = 355/406 (88%), Gaps = 5/406 (1%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGG-----GTMTHAWLLTGPPGSGRSV 55 M+GVF+RLVGQ AVE EL A A+AAR DS H++G GTMTHAWL+TGPPGSGRS+ Sbjct 1 MTGVFSRLVGQDAVETELTAAARAARGDSPHTSGLDVSGVTGTMTHAWLITGPPGSGRSI 60 Query 56 AALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAAR 115 AALCFAAALQCTS G PGCG CRAC TT+AGTHADVRR+IPEGLSIGVD MRAIVQIA+R Sbjct 61 AALCFAAALQCTSDGTPGCGECRACATTMAGTHADVRRIIPEGLSIGVDAMRAIVQIASR 120 Query 116 RPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCR 175 RP TG WQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIA+TLRSRCR Sbjct 121 RPGTGRWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCR 180 Query 176 HVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGL 235 HVALVTP AIA+VL D DGL A WAA+VSGGHVGRARRLATD +AR+RR+RALGL Sbjct 181 HVALVTPPVDAIARVLIDSDGLPEKDAEWAAAVSGGHVGRARRLATDERARERRQRALGL 240 Query 236 ARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGA 295 ARDAATPSRAYAAAEELVA AEAEA ALT R E E EELRTALGAGGTGKGT +RGA Sbjct 241 ARDAATPSRAYAAAEELVATAEAEAKALTEDRNEVEAEELRTALGAGGTGKGTAGTMRGA 300 Query 296 TGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAA 355 GA+K+LE+RQKSR TRASRDALDRALIDLATYFRDALLV++ A V ANHPDMA++VAA Sbjct 301 AGALKELEKRQKSRHTRASRDALDRALIDLATYFRDALLVSSGATDVVANHPDMAEKVAA 360 Query 356 LAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 +AAHA PE+LLRCIEAVL CREALAVNVKPKFAVDAMV T+GQ LR Sbjct 361 MAAHASPEKLLRCIEAVLECREALAVNVKPKFAVDAMVGTVGQALR 406 >gi|342862019|ref|ZP_08718663.1| DNA polymerase III subunit delta' [Mycobacterium colombiense CECT 3035] gi|342130559|gb|EGT83868.1| DNA polymerase III subunit delta' [Mycobacterium colombiense CECT 3035] Length=409 Score = 600 bits (1546), Expect = 2e-169, Method: Compositional matrix adjust. Identities = 349/407 (86%), Positives = 371/407 (92%), Gaps = 6/407 (1%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVFTRLVGQ AV AELL+ A+AAR D H+ G GTMTHAWL+TGPPGSGRSVAALCF Sbjct 2 MSGVFTRLVGQDAVTAELLSAARAARGDVGHTGAGAGTMTHAWLITGPPGSGRSVAALCF 61 Query 61 AAALQCTSG---GEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRP 117 AAALQCTS G+PGCGRC ACTTT+AGTHADVRRV+PEGLSIGVDEMR+IVQIA+RRP Sbjct 62 AAALQCTSAAEDGDPGCGRCHACTTTMAGTHADVRRVVPEGLSIGVDEMRSIVQIASRRP 121 Query 118 TTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHV 177 TGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIA+TLRSRCRHV Sbjct 122 ATGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHV 181 Query 178 ALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLAR 237 ALVTPST AIA+VL D DGL PDTA+WAASVSGGHVGRARRLATDP+AR+RRER+L L R Sbjct 182 ALVTPSTEAIARVLVDSDGLSPDTASWAASVSGGHVGRARRLATDPEARERRERSLSLVR 241 Query 238 DAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATG 297 DAATPSRAYAAAEELVA AEAEA+ LTA R EAETEELRTALGAGGTGKGT A+RGA G Sbjct 242 DAATPSRAYAAAEELVAAAEAEAVVLTADRAEAETEELRTALGAGGTGKGTAGAMRGAAG 301 Query 298 AMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGG---VRANHPDMADRVA 354 AMKDLERRQKSRQTRASRDALDRALIDLATYFRDAL+ +A GG VRANHPDMA++VA Sbjct 302 AMKDLERRQKSRQTRASRDALDRALIDLATYFRDALMTSALDGGAGAVRANHPDMAEKVA 361 Query 355 ALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 ALAAHAPP RLLRCIEAVL CREALA+NVKPKFAVDAMVATIGQELR Sbjct 362 ALAAHAPPARLLRCIEAVLECREALAINVKPKFAVDAMVATIGQELR 408 >gi|41406525|ref|NP_959361.1| DNA polymerase III subunit delta' [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394874|gb|AAS02744.1| hypothetical protein MAP_0427 [Mycobacterium avium subsp. paratuberculosis K-10] Length=401 Score = 599 bits (1545), Expect = 3e-169, Method: Compositional matrix adjust. Identities = 351/400 (88%), Positives = 373/400 (94%), Gaps = 0/400 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVFTRLVGQ AV+AELL A+AAR D+ HS G GTMTHAWL+TGPPGSGRSVAALCF Sbjct 1 MSGVFTRLVGQDAVKAELLGAARAARGDAGHSDAGAGTMTHAWLITGPPGSGRSVAALCF 60 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCT+ GEPGCGRC ACTTTLAGTHADVRRV+PEGLSIGVDEMRAIVQIAARRP TG Sbjct 61 AAALQCTADGEPGCGRCHACTTTLAGTHADVRRVVPEGLSIGVDEMRAIVQIAARRPATG 120 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 +WQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPED+A+TLRSRCRHVALV Sbjct 121 NWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDVAITLRSRCRHVALV 180 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPST AIA+VL D DGL P+TA+WAASVSGGHVGRARRLATDP+ARQRRERALGL RDAA Sbjct 181 TPSTEAIARVLVDSDGLTPETADWAASVSGGHVGRARRLATDPEARQRRERALGLVRDAA 240 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TPSRAYAAAEELVA AEAEA+ LTA+R EAETEELRTALGAGGTGKGT A+RGA GA+K Sbjct 241 TPSRAYAAAEELVAAAEAEAVVLTAERAEAETEELRTALGAGGTGKGTAGAMRGAAGAIK 300 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 DLER QKSRQTRASRDALDRALIDLATYFRDAL+ ++ AG VRANHPDMA+RVAALAAHA Sbjct 301 DLERCQKSRQTRASRDALDRALIDLATYFRDALMASSGAGAVRANHPDMAERVAALAAHA 360 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQEL 400 PPERLLRCIEAVL CREALAVNVKPKFAVDAMVATIGQ+L Sbjct 361 PPERLLRCIEAVLECREALAVNVKPKFAVDAMVATIGQQL 400 >gi|118469832|ref|YP_890373.1| DNA polymerase III subunit delta' [Mycobacterium smegmatis str. MC2 155] gi|118171119|gb|ABK72015.1| DNA polymerase III subunit delta [Mycobacterium smegmatis str. MC2 155] Length=402 Score = 588 bits (1517), Expect = 5e-166, Method: Compositional matrix adjust. Identities = 333/401 (84%), Positives = 359/401 (90%), Gaps = 0/401 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVF+RLVGQ AVE EL+A A AAR DSAHS GTMTHAWL+TGPPGSGRSVAALCF Sbjct 1 MSGVFSRLVGQHAVEQELVAAAAAARGDSAHSGVATGTMTHAWLITGPPGSGRSVAALCF 60 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCTS G PGCG CRACTTT+AGTHADVRR++PEGLSI V EMR IVQIA+RRP TG Sbjct 61 AAALQCTSDGVPGCGECRACTTTMAGTHADVRRIVPEGLSIAVKEMREIVQIASRRPGTG 120 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 WQ+VVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIA+TLRSRCRH+AL Sbjct 121 RWQVVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHIALT 180 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPS AIA VL GDGL P+ A WAASV GGHVGRARRLATDP+AR+RR+RALGLARDAA Sbjct 181 TPSIDAIADVLITGDGLPPEDARWAASVCGGHVGRARRLATDPEARERRKRALGLARDAA 240 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TPSRAYAAAEE+VA AEAEA+ALTA R E ETEEL+TALGAGGTGKGT +RGA GA+K Sbjct 241 TPSRAYAAAEEMVAVAEAEAVALTADRNENETEELKTALGAGGTGKGTAGTMRGAAGALK 300 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 +LE+RQKSRQTRASRDALDRALIDLATYFRDALLV++ A V ANHPDMA++VAALAAHA Sbjct 301 ELEKRQKSRQTRASRDALDRALIDLATYFRDALLVSSGANTVTANHPDMAEKVAALAAHA 360 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 P+RLLRCIEAVL CREALAVNVKPKFAVDAMVATIGQ LR Sbjct 361 APDRLLRCIEAVLECREALAVNVKPKFAVDAMVATIGQALR 401 >gi|118465813|ref|YP_879801.1| DNA polymerase III subunit delta' [Mycobacterium avium 104] gi|118167100|gb|ABK67997.1| DNA polymerase III subunit delta [Mycobacterium avium 104] Length=388 Score = 574 bits (1480), Expect = 7e-162, Method: Compositional matrix adjust. Identities = 338/387 (88%), Positives = 361/387 (94%), Gaps = 0/387 (0%) Query 14 VEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAALQCTSGGEPG 73 ++AELL A+AAR D+ HS G GTMTHAWL+TGPPGSGRSVAALCFAAALQCT+ GEPG Sbjct 1 MKAELLGAARAARGDAGHSDAGAGTMTHAWLITGPPGSGRSVAALCFAAALQCTADGEPG 60 Query 74 CGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHWQIVVIEDADRL 133 CGRC ACTTTLAGTHADVRRV+PEGLSIGVD MRAIVQIAARRP TG+WQIVVIEDADRL Sbjct 61 CGRCHACTTTLAGTHADVRRVVPEGLSIGVDGMRAIVQIAARRPATGNWQIVVIEDADRL 120 Query 134 TEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSD 193 TEGAANALLKVVEEPPPSTVFLLCAPSVDPED+A+TLRSRCRHVALVTPST AIA+VL D Sbjct 121 TEGAANALLKVVEEPPPSTVFLLCAPSVDPEDVAITLRSRCRHVALVTPSTEAIARVLVD 180 Query 194 GDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATPSRAYAAAEELV 253 DGL P+TA+WAASVSGGHVGRARRLATDP+ARQRRERALGL RDAATPSRAYAAAEELV Sbjct 181 SDGLTPETADWAASVSGGHVGRARRLATDPEARQRRERALGLVRDAATPSRAYAAAEELV 240 Query 254 AGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDLERRQKSRQTRA 313 A AEAEA+ LTA+R EAETEELRTALGAGGTGKGT A+RGA GA+KDLERRQKSRQTRA Sbjct 241 AAAEAEAVVLTAERAEAETEELRTALGAGGTGKGTAGAMRGAAGAIKDLERRQKSRQTRA 300 Query 314 SRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPPERLLRCIEAVL 373 SRDALDRALIDLATYFRDAL+ ++ AG VRANHPDMA+RVAALAAHAPPERLLRCIEAVL Sbjct 301 SRDALDRALIDLATYFRDALMASSGAGAVRANHPDMAERVAALAAHAPPERLLRCIEAVL 360 Query 374 ACREALAVNVKPKFAVDAMVATIGQEL 400 CREALAVNVKPKFAVDAMVATIGQ+L Sbjct 361 ECREALAVNVKPKFAVDAMVATIGQQL 387 >gi|15827007|ref|NP_301270.1| DNA polymerase III subunit delta' [Mycobacterium leprae TN] gi|221229485|ref|YP_002502901.1| DNA polymerase III subunit delta' [Mycobacterium leprae Br4923] gi|3097239|emb|CAA18816.1| hypothetical protein MLCB2548.29c [Mycobacterium leprae] gi|13092554|emb|CAC29710.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932592|emb|CAR70295.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=405 Score = 566 bits (1458), Expect = 3e-159, Method: Compositional matrix adjust. Identities = 341/404 (85%), Positives = 359/404 (89%), Gaps = 3/404 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVFTRLVGQ AVEAELLA AKAAR D HS GTMTHAWL+TGPPGSGRSVAA+CF Sbjct 1 MSGVFTRLVGQDAVEAELLAAAKAARSDLVHSRPADGTMTHAWLITGPPGSGRSVAAVCF 60 Query 61 AAALQCTSG---GEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRP 117 AAALQCT+ G PGCGRCRACTTT+AGTHADVRRVIP+GLSIGVDEMRAIV A+RRP Sbjct 61 AAALQCTADFQDGGPGCGRCRACTTTMAGTHADVRRVIPDGLSIGVDEMRAIVHEASRRP 120 Query 118 TTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHV 177 +TG+WQIV+IEDADRLTEGAANALLKVVEEPP STVFLLCAPSV PEDIAVTLRSRCRHV Sbjct 121 STGYWQIVLIEDADRLTEGAANALLKVVEEPPSSTVFLLCAPSVAPEDIAVTLRSRCRHV 180 Query 178 ALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLAR 237 ALVTPS AIA+VL D DGL DTANWAA VSGGHVG ARRLATDP+A+QRRERA GL R Sbjct 181 ALVTPSHAAIARVLIDSDGLAADTANWAALVSGGHVGLARRLATDPEAQQRRERAFGLIR 240 Query 238 DAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATG 297 DA PSRAYA AEELVA AEAEAL LTA+R EAETEELRTALGAGGTGKGT ALR TG Sbjct 241 DAVVPSRAYAVAEELVAAAEAEALVLTAERAEAETEELRTALGAGGTGKGTAGALRSVTG 300 Query 298 AMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALA 357 A+KDLERRQKSRQTRASRDALDR LIDLATYFRDALLV+A+AG V+ NHPDMADRVA LA Sbjct 301 AIKDLERRQKSRQTRASRDALDRVLIDLATYFRDALLVSANAGSVQPNHPDMADRVAVLA 360 Query 358 AHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 HA PERLLRCIEAVL CREALAVNVKPKFAVDA+VATIGQELR Sbjct 361 CHATPERLLRCIEAVLECREALAVNVKPKFAVDALVATIGQELR 404 >gi|289759799|ref|ZP_06519177.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis T85] gi|289715363|gb|EFD79375.1| DNA polymerase III subunit delta [Mycobacterium tuberculosis T85] Length=285 Score = 546 bits (1408), Expect = 2e-153, Method: Compositional matrix adjust. Identities = 277/281 (99%), Positives = 278/281 (99%), Gaps = 0/281 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF Sbjct 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG Sbjct 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV Sbjct 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA Sbjct 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGA 281 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELR G+ Sbjct 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRDGAGS 281 >gi|333992569|ref|YP_004525183.1| DNA polymerase III subunit delta' [Mycobacterium sp. JDM601] gi|333488537|gb|AEF37929.1| DNA polymerase III subunit delta' [Mycobacterium sp. JDM601] Length=408 Score = 545 bits (1403), Expect = 6e-153, Method: Compositional matrix adjust. Identities = 313/405 (78%), Positives = 346/405 (86%), Gaps = 4/405 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVF RLVGQQ VEAELLA A+AAR D+AHS G M+HAWL+TGPPGSGRS+AA+CF Sbjct 1 MSGVFARLVGQQPVEAELLAAARAARYDAAHSVRTAGGMSHAWLITGPPGSGRSIAAVCF 60 Query 61 AAALQCTSG---GEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRP 117 AAALQC++ G PGCG CRACTTT+AGTHADVRRV+PEGLSIGV+EMR+IVQ+A+RRP Sbjct 61 AAALQCSADEADGGPGCGTCRACTTTMAGTHADVRRVVPEGLSIGVEEMRSIVQVASRRP 120 Query 118 TTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHV 177 TG WQIVVIEDADRL E A NALLK +EEPPPSTVFLLCAPSVDPEDI++TLRSRCRHV Sbjct 121 GTGRWQIVVIEDADRLGERAGNALLKAIEEPPPSTVFLLCAPSVDPEDISITLRSRCRHV 180 Query 178 ALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLAR 237 ALVTP+ AIAQVL D DGLD +TA WAA+VSGGHVGRARRLATDP+ARQRR+RAL LAR Sbjct 181 ALVTPAPAAIAQVLIDTDGLDHETAGWAAAVSGGHVGRARRLATDPEARQRRQRALALAR 240 Query 238 DAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATG 297 D+ATPSRA++A +ELVA AE+EA LTA R EAETEELRTALGAGGTGKGT LRG G Sbjct 241 DSATPSRAFSAVDELVAAAESEARDLTADRAEAETEELRTALGAGGTGKGTAGTLRGTAG 300 Query 298 AMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVA-AHAGGVRANHPDMADRVAAL 356 +KDLERRQ SR RAS DALDRALIDLA+YFRDALLVA A AG R NHPDM D AA+ Sbjct 301 MIKDLERRQNSRHKRASLDALDRALIDLASYFRDALLVATASAGAARPNHPDMVDAAAAM 360 Query 357 AAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 AAHA + LLRCIEAVL CR+ALA NVKP+FAV AMVATIGQ LR Sbjct 361 AAHASGDALLRCIEAVLECRDALAANVKPRFAVGAMVATIGQALR 405 >gi|169627595|ref|YP_001701244.1| DNA polymerase III subunit delta' [Mycobacterium abscessus ATCC 19977] gi|169239562|emb|CAM60590.1| Probable DNA polymerase III, delta' subunit [Mycobacterium abscessus] Length=401 Score = 544 bits (1402), Expect = 8e-153, Method: Compositional matrix adjust. Identities = 305/404 (76%), Positives = 333/404 (83%), Gaps = 9/404 (2%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVF RLV Q AV + L ++A AAR D A G MTHAWL TGPPGSGRSVAALCF Sbjct 1 MSGVFGRLVDQGAVVSTLSSSALAARGDDA------GRMTHAWLFTGPPGSGRSVAALCF 54 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQC S GCG CR CTTT+AGTHADVRRV+PEGLSIGVDEMRAIVQ A RRP+TG Sbjct 55 AAALQCESEDVAGCGACRPCTTTMAGTHADVRRVVPEGLSIGVDEMRAIVQAAWRRPSTG 114 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 W +V+IEDADRLTEGA N LLKVVEEPPP TVFLLCAPSVDPEDI++TLRSRCRHVALV Sbjct 115 RWLVVLIEDADRLTEGAGNVLLKVVEEPPPRTVFLLCAPSVDPEDISITLRSRCRHVALV 174 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPS AIAQVL D DG+D + A WAASVSGGHVGRARRLATD QAR RR +ALGLAR+AA Sbjct 175 TPSVAAIAQVLVDRDGIDAEQAQWAASVSGGHVGRARRLATDEQARARRLKALGLAREAA 234 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TPSRAYAAAEELV A+AEA LTA R EAE EEL+TALGAGGTGKG ALRG+ G +K Sbjct 235 TPSRAYAAAEELVTSADAEAKELTAARNEAEEEELKTALGAGGTGKGAATALRGSAGVLK 294 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLV---AAHAGGVRANHPDMADRVAALA 357 DLER+QKSRQTRASRDALDR LIDLATYFRDAL++ AA G V +HPDMADR+ + Sbjct 295 DLERKQKSRQTRASRDALDRTLIDLATYFRDALVLSFGAAGQGRVALHHPDMADRLGPMV 354 Query 358 AHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 PPE+LL+CIEAVL CREALAVNVKPKFA+DA+VAT GQ LR Sbjct 355 DRVPPEQLLKCIEAVLECREALAVNVKPKFAIDALVATAGQALR 398 >gi|226363674|ref|YP_002781456.1| DNA polymerase III subunit delta' [Rhodococcus opacus B4] gi|226242163|dbj|BAH52511.1| DNA polymerase III delta' subunit [Rhodococcus opacus B4] Length=404 Score = 502 bits (1293), Expect = 4e-140, Method: Compositional matrix adjust. Identities = 281/398 (71%), Positives = 317/398 (80%), Gaps = 4/398 (1%) Query 4 VFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAA 63 VF RLVGQ+ VE+EL A A AARR G +MTH+WL TGPPGSGRSVAA CFAAA Sbjct 3 VFDRLVGQEDVESELTAAATAARRGVGEM---GSSMTHSWLFTGPPGSGRSVAAQCFAAA 59 Query 64 LQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHWQ 123 LQCTS G PGCG C ACTT +AGTH DVR+V+PEGLSI V EMRA VQ AARRP+TG WQ Sbjct 60 LQCTSEGTPGCGVCHACTTAMAGTHGDVRQVVPEGLSISVKEMRATVQTAARRPSTGRWQ 119 Query 124 IVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPS 183 IVV+EDADRLTEGAANALLKVVEEPP TVFLLCAPSVDP+DI+VTLRSRCRH+ LVTPS Sbjct 120 IVVVEDADRLTEGAANALLKVVEEPPDRTVFLLCAPSVDPQDISVTLRSRCRHIHLVTPS 179 Query 184 THAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATPS 243 +IA+VL + DGLDP+ A AAS+SGGHVGRARRLATD A+ RR+ AL LA A P+ Sbjct 180 ADSIAKVLRERDGLDPEAAQLAASISGGHVGRARRLATDLNAKVRRKDALDLAVAALRPA 239 Query 244 RAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDLE 303 A+AAAEELV A+AEA ++A R E ETEELRTALGAGGTGKG ALRG+ G +KDLE Sbjct 240 TAFAAAEELVRSADAEAKEMSAARDEQETEELRTALGAGGTGKGAAGALRGSAGVLKDLE 299 Query 304 RRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPPE 363 +RQKSR TR RDALDRALIDLA +RDAL VA + ANHPDMADR A LA+ PE Sbjct 300 KRQKSRATRTGRDALDRALIDLAGLYRDALAVAWKSTAA-ANHPDMADRAADLASRTTPE 358 Query 364 RLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 LL+CIEAVL CREA+AVNVKP++AVDAMVA++G R Sbjct 359 GLLKCIEAVLECREAIAVNVKPQWAVDAMVASLGDAFR 396 >gi|111021330|ref|YP_704302.1| DNA polymerase III subunit delta' [Rhodococcus jostii RHA1] gi|110820860|gb|ABG96144.1| probable DNA-directed DNA polymerase III delta prime subunit [Rhodococcus jostii RHA1] Length=404 Score = 501 bits (1291), Expect = 6e-140, Method: Compositional matrix adjust. Identities = 285/398 (72%), Positives = 316/398 (80%), Gaps = 4/398 (1%) Query 4 VFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAA 63 VF RLVGQ+ VEAEL A A AARR G +MTH+WL TGPPGSGRSVAA CFAAA Sbjct 3 VFDRLVGQEDVEAELTAAATAARRGVG---AMGSSMTHSWLFTGPPGSGRSVAAQCFAAA 59 Query 64 LQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHWQ 123 LQCTS G PGCG C ACTT +AGTH DVR+V+PEGLSI V EMRAIVQ AARRP+TG WQ Sbjct 60 LQCTSDGVPGCGVCHACTTAMAGTHGDVRQVVPEGLSISVKEMRAIVQTAARRPSTGRWQ 119 Query 124 IVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPS 183 IVV+EDADRLTEGAANALLKVVEEPP TVFLLCAPSVDP+DI+VTLRSRCRHV LVTPS Sbjct 120 IVVVEDADRLTEGAANALLKVVEEPPDRTVFLLCAPSVDPQDISVTLRSRCRHVHLVTPS 179 Query 184 THAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATPS 243 +IA+VL + DGLDP A AAS+SGGHVGRARRLATD A+ RR+ AL LA A P+ Sbjct 180 ADSIAKVLRERDGLDPADAQLAASISGGHVGRARRLATDLNAKVRRKDALDLAVAALRPA 239 Query 244 RAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDLE 303 A+AAAEELV A+AEA ++A R E ETEELRTALGAGGTGKG ALRG+ G +KDLE Sbjct 240 TAFAAAEELVRSADAEAKEMSASRDEQETEELRTALGAGGTGKGAAGALRGSAGVLKDLE 299 Query 304 RRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPPE 363 +RQKSR TR RDALDRALIDLA +RDAL VA + ANHPDMADR A LA+ PE Sbjct 300 KRQKSRATRTGRDALDRALIDLAGLYRDALAVAWKSNAA-ANHPDMADRAADLASRTTPE 358 Query 364 RLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 LLRCIEAVL CREA+ VNVKP++AVDAMVAT+G R Sbjct 359 GLLRCIEAVLECREAITVNVKPQWAVDAMVATLGDAFR 396 >gi|312138020|ref|YP_004005356.1| DNA polymerase III delta' subunit [Rhodococcus equi 103S] gi|311887359|emb|CBH46670.1| DNA polymerase III delta' subunit [Rhodococcus equi 103S] Length=395 Score = 490 bits (1261), Expect = 2e-136, Method: Compositional matrix adjust. Identities = 282/403 (70%), Positives = 317/403 (79%), Gaps = 10/403 (2%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 M+GVF RLVGQ+ VEAEL A A AAR A G MTH+WL TGPPGSGRSVAA+CF Sbjct 1 MAGVFDRLVGQEHVEAELTAAATAARGGDA-----GSRMTHSWLFTGPPGSGRSVAAVCF 55 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCTS G PGCG C+ACTTT+AGTH DVRRV+PEGLSI V EMR IVQ A+RRP+TG Sbjct 56 AAALQCTSDGVPGCGECQACTTTMAGTHGDVRRVVPEGLSISVSEMRGIVQTASRRPSTG 115 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 WQ+VV+EDADRLTEGAANALLKVVEEPP TVFLLCAPSVDP+DI+VTLRSRCRH+ LV Sbjct 116 RWQVVVVEDADRLTEGAANALLKVVEEPPERTVFLLCAPSVDPQDISVTLRSRCRHIPLV 175 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPS AIAQVL + D LD +T++WAAS+ GGHVGRARRLA D AR RR+RAL LA A Sbjct 176 TPSVDAIAQVLRERDHLDAETSDWAASICGGHVGRARRLARDEDARSRRKRALALAGAAL 235 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 P AYAAAEELV AE EA LTA+R E ETEE+RTALGAGGTGKG ALRG+ G +K Sbjct 236 RPGTAYAAAEELVQSAELEARELTAERDERETEEMRTALGAGGTGKGAAGALRGSAGVLK 295 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRA--NHPDMADRVAALAA 358 +LERRQKSR TR RD+LDRAL+DLA +RDAL A++ G A NHPDMA++ A LA Sbjct 296 ELERRQKSRATRTGRDSLDRALMDLAGLYRDAL---AYSFGSSATPNHPDMAEQAADLAG 352 Query 359 HAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 E LLRCIEA+L CREAL NVKPKFA DA+VA +G E R Sbjct 353 RTSREGLLRCIEAILDCREALDQNVKPKFAADALVARLGAEFR 395 >gi|325675217|ref|ZP_08154902.1| DNA-directed DNA polymerase III subunit delta' [Rhodococcus equi ATCC 33707] gi|325553923|gb|EGD23600.1| DNA-directed DNA polymerase III subunit delta' [Rhodococcus equi ATCC 33707] Length=395 Score = 490 bits (1261), Expect = 2e-136, Method: Compositional matrix adjust. Identities = 282/403 (70%), Positives = 317/403 (79%), Gaps = 10/403 (2%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 M+GVF RLVGQ+ VEAEL A A AAR A G MTH+WL TGPPGSGRSVAA+CF Sbjct 1 MAGVFDRLVGQEHVEAELTAAATAARGGDA-----GSRMTHSWLFTGPPGSGRSVAAVCF 55 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCTS G PGCG C+ACTTT+AGTH DVRRV+PEGLSI V EMR IVQ A+RRP+TG Sbjct 56 AAALQCTSEGVPGCGECQACTTTMAGTHGDVRRVVPEGLSISVSEMRGIVQTASRRPSTG 115 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 WQ+VV+EDADRLTEGAANALLKVVEEPP TVFLLCAPSVDP+DI+VTLRSRCRH+ LV Sbjct 116 RWQVVVVEDADRLTEGAANALLKVVEEPPERTVFLLCAPSVDPQDISVTLRSRCRHIPLV 175 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPS AIAQVL + D LD +T++WAAS+ GGHVGRARRLA D AR RR+RAL LA A Sbjct 176 TPSVDAIAQVLRERDHLDAETSDWAASICGGHVGRARRLARDEDARSRRKRALALAGAAL 235 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 P AYAAAEELV AE EA LTA+R E ETEE+RTALGAGGTGKG ALRG+ G +K Sbjct 236 RPGTAYAAAEELVQSAELEARELTAERDERETEEMRTALGAGGTGKGAAGALRGSAGVLK 295 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRA--NHPDMADRVAALAA 358 +LERRQKSR TR RD+LDRAL+DLA +RDAL A++ G A NHPDMA++ A LA Sbjct 296 ELERRQKSRATRTGRDSLDRALMDLAGLYRDAL---AYSFGSSATPNHPDMAEQAADLAG 352 Query 359 HAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 E LLRCIEA+L CREAL NVKPKFA DA+VA +G E R Sbjct 353 RTSREGLLRCIEAILDCREALDQNVKPKFAADALVARLGAEFR 395 >gi|254773489|ref|ZP_05215005.1| DNA polymerase III subunit delta' [Mycobacterium avium subsp. avium ATCC 25291] Length=335 Score = 486 bits (1250), Expect = 4e-135, Method: Compositional matrix adjust. Identities = 292/334 (88%), Positives = 312/334 (94%), Gaps = 0/334 (0%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVFTRLVGQ AV+AELL A+AAR D+ HS G GTMTHAWL+TGPPGSGRSVAALCF Sbjct 1 MSGVFTRLVGQDAVKAELLGAARAARGDAGHSDAGAGTMTHAWLITGPPGSGRSVAALCF 60 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCT+ GEPGCGRC ACTTTLAGTHADVRRV+PEGLSIGVD+MRAIVQIAARRP TG Sbjct 61 AAALQCTADGEPGCGRCHACTTTLAGTHADVRRVVPEGLSIGVDDMRAIVQIAARRPATG 120 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 +WQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPED+A+TLRSRCRHVALV Sbjct 121 NWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDVAITLRSRCRHVALV 180 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPS+ AIA+VL D DGL P+TA+WAASVSGGHVGRARRLATDP+ARQRRERALGL RDAA Sbjct 181 TPSSEAIARVLVDSDGLTPETADWAASVSGGHVGRARRLATDPEARQRRERALGLVRDAA 240 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 TPSRAYAAAEELVA AEAEA+ LTA+R EAETEELRTALGAGGTGKGT A+RGA GA+K Sbjct 241 TPSRAYAAAEELVAAAEAEAVVLTAERAEAETEELRTALGAGGTGKGTAGAMRGAAGAIK 300 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALL 334 DLERRQKSRQTRASRDALDRALIDLATYFRDAL+ Sbjct 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALM 334 >gi|343926498|ref|ZP_08766003.1| DNA polymerase III delta' subunit [Gordonia alkanivorans NBRC 16433] gi|343763736|dbj|GAA12929.1| DNA polymerase III delta' subunit [Gordonia alkanivorans NBRC 16433] Length=428 Score = 474 bits (1221), Expect = 8e-132, Method: Compositional matrix adjust. Identities = 272/424 (65%), Positives = 315/424 (75%), Gaps = 24/424 (5%) Query 1 MSGVFTRLVGQQAVEAELLATAKAA-----RRDSAHSAG---------------GGGTMT 40 M+ VF RL GQ+A+ +L A A+AA + D+ S G +MT Sbjct 1 MTNVFDRLTGQEAIADDLRAAARAARVLAQQLDAGSSEGLFVPDDEIPGVDAGWSRASMT 60 Query 41 HAWLLTGPPGSGRSVAALCFAAALQCTS--GGEPGCGRCRACTTTLAGTHADVRRVIPEG 98 H+WL TGPPGSGRSVAA CFAAALQC S GCG CRAC T +A THADVR V+PEG Sbjct 61 HSWLFTGPPGSGRSVAATCFAAALQCQSPESANVGCGECRACVTVMAKTHADVRHVVPEG 120 Query 99 LSIGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCA 158 LS+ V+ MR IVQ AARRP TG WQIV++EDADRLTE AANALLKVVEEPPP TVFLLCA Sbjct 121 LSLAVNAMRDIVQAAARRPGTGRWQIVIVEDADRLTEQAANALLKVVEEPPPRTVFLLCA 180 Query 159 PSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARR 218 PSVDPEDI+VTLRSRCRHVALV+P+ AI +VL + DGLDPD A WAASV GGH+GRARR Sbjct 181 PSVDPEDISVTLRSRCRHVALVSPTPAAIERVLIERDGLDPDQARWAASVCGGHIGRARR 240 Query 219 LATDPQARQRRERALGLARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTA 278 LATDP AR +RE+AL LAR A+ S AYAAAEELV AE A A++A+ EAETEE++TA Sbjct 241 LATDPDARSQREKALSLARAASRDSTAYAAAEELVRSAETAAKAISAELDEAETEEMKTA 300 Query 279 LGAGGTGKGTGAALRGATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAH 338 LGAGGTGKGT RG+ GA+K+LE+RQKSR TR RD LDRAL+DLA FRDAL+V Sbjct 301 LGAGGTGKGTARMPRGSAGALKELEKRQKSRATRVGRDVLDRALVDLAALFRDALVVGVG 360 Query 339 AGGVRANHPDMADRVA-ALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIG 397 A V A HPD +D ++ LA +A PE+LL C+EAVL CREAL +NVKPKFAVD MVA IG Sbjct 361 A-EVTAMHPDKSDDISIPLAGYARPEQLLSCVEAVLDCREALDMNVKPKFAVDDMVARIG 419 Query 398 QELR 401 L+ Sbjct 420 LALK 423 >gi|226304003|ref|YP_002763961.1| DNA polymerase III delta' subunit [Rhodococcus erythropolis PR4] gi|226183118|dbj|BAH31222.1| putative DNA polymerase III delta' subunit [Rhodococcus erythropolis PR4] Length=409 Score = 468 bits (1204), Expect = 7e-130, Method: Compositional matrix adjust. Identities = 263/399 (66%), Positives = 297/399 (75%), Gaps = 6/399 (1%) Query 3 GVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAA 62 GVF RLVGQ VE L A +AR DS+ G MTHAWL TGPPGSGRSVAALCFAA Sbjct 9 GVFGRLVGQHDVEQSLRDAALSARGDSS-----GSEMTHAWLFTGPPGSGRSVAALCFAA 63 Query 63 ALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHW 122 ALQCTS G PGCG C ACTTT+ GTH DVRR+IP+GLSI V MR IV IA+RRPTTG W Sbjct 64 ALQCTSDGAPGCGECHACTTTMGGTHGDVRRIIPDGLSISVKGMREIVNIASRRPTTGRW 123 Query 123 QIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTP 182 Q++V+EDADRLTEGAANALLKVVEEPP TV LLCAP+ DPED++VTLRSRCRH+ LVTP Sbjct 124 QVIVVEDADRLTEGAANALLKVVEEPPDRTVILLCAPTTDPEDMSVTLRSRCRHMPLVTP 183 Query 183 STHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATP 242 S +IAQVL D DGLDP+ A AAS+SGGHVGRARRLATD AR R+R+L LA DA Sbjct 184 SVESIAQVLIDRDGLDPERARIAASISGGHVGRARRLATDESARDERQRSLRLAADAIGA 243 Query 243 SRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDL 302 S AY AAE LV EA+ A A+ E E EEL+ +LG GGTGKGT LRG+ G +KDL Sbjct 244 STAYKAAENLVKSIEADTKAFYAELKEQELEELKVSLGGGGTGKGTAGTLRGSAGLIKDL 303 Query 303 ERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPP 362 E RQKSR TRA RD LDR LIDLA +RDAL + + A HPDMA + A LAA P Sbjct 304 EARQKSRDTRARRDLLDRTLIDLAGMYRDALSYSLGSTST-ATHPDMARQAAELAARTSP 362 Query 363 ERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 E LL+CIEAVL CREA+ NVK ++A+DAMVA+IG R Sbjct 363 EGLLKCIEAVLECREAVDFNVKLQWALDAMVASIGAAFR 401 >gi|229494803|ref|ZP_04388559.1| DNA polymerase III subunit delta [Rhodococcus erythropolis SK121] gi|229318299|gb|EEN84164.1| DNA polymerase III subunit delta [Rhodococcus erythropolis SK121] Length=405 Score = 467 bits (1202), Expect = 2e-129, Method: Compositional matrix adjust. Identities = 263/399 (66%), Positives = 297/399 (75%), Gaps = 6/399 (1%) Query 3 GVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAA 62 GVF RLVGQ VE L A +AR DS+ G MTHAWL TGPPGSGRSVAALCFAA Sbjct 5 GVFGRLVGQHDVEQSLRDAALSARGDSS-----GSEMTHAWLFTGPPGSGRSVAALCFAA 59 Query 63 ALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHW 122 ALQCTS G PGCG C ACTTT+ GTH DVRR+IP+GLSI V MR IV IA+RRPTTG W Sbjct 60 ALQCTSDGAPGCGECHACTTTMGGTHGDVRRIIPDGLSISVKGMREIVNIASRRPTTGRW 119 Query 123 QIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTP 182 Q++V+EDADRLTEGAANALLKVVEEPP TV LLCAP+ DPED++VTLRSRCRH+ LVTP Sbjct 120 QVIVVEDADRLTEGAANALLKVVEEPPDRTVILLCAPTTDPEDMSVTLRSRCRHMPLVTP 179 Query 183 STHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATP 242 S +IAQVL D DGLDP+ A AAS+SGGHVGRARRLATD AR R+R+L LA DA Sbjct 180 SVESIAQVLIDRDGLDPERARIAASISGGHVGRARRLATDESARDERQRSLRLAADAIGA 239 Query 243 SRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDL 302 S AY AAE LV EA+ A A+ E E EEL+ +LG GGTGKGT LRG+ G +KDL Sbjct 240 STAYKAAENLVKSIEADTKAFYAELKEQELEELKVSLGGGGTGKGTAGTLRGSAGLIKDL 299 Query 303 ERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPP 362 E RQKSR TRA RD LDR LIDLA +RDAL + + A HPDMA + A LAA P Sbjct 300 EARQKSRDTRARRDLLDRTLIDLAGMYRDALSCSLGSTST-ATHPDMARQAAELAARTSP 358 Query 363 ERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 E LL+CIEAVL CREA+ NVK ++A+DAMVA+IG R Sbjct 359 EGLLKCIEAVLECREAVDFNVKLQWALDAMVASIGAAFR 397 >gi|262200591|ref|YP_003271799.1| DNA polymerase III subunit delta' [Gordonia bronchialis DSM 43247] gi|262083938|gb|ACY19906.1| DNA polymerase III, delta prime subunit [Gordonia bronchialis DSM 43247] Length=431 Score = 457 bits (1176), Expect = 1e-126, Method: Compositional matrix adjust. Identities = 263/427 (62%), Positives = 307/427 (72%), Gaps = 27/427 (6%) Query 1 MSGVFTRLVGQQAVEAELLATAKAAR-----------------------RDSAHSAGGGG 37 M+ VF RL GQ A+ +L + A+AAR D A Sbjct 1 MTSVFDRLTGQTAIADDLRSAARAARGLANRLDEGDVGAESMFADTAEQADDVCDAASRA 60 Query 38 TMTHAWLLTGPPGSGRSVAALCFAAALQCTSG--GEPGCGRCRACTTTLAGTHADVRRVI 95 +MTH+WL TGPPGSGRSVAA CFAAALQC + + GCG+CRAC T +AGTHADVR + Sbjct 61 SMTHSWLFTGPPGSGRSVAATCFAAALQCQADDPADIGCGQCRACVTVMAGTHADVRSIA 120 Query 96 PEGLSIGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFL 155 P+GL++ V MR IVQ A+RRP TG WQIV++EDADRLTE AANALLKVVEEPP TVFL Sbjct 121 PDGLTLSVKSMREIVQTASRRPGTGRWQIVIVEDADRLTEQAANALLKVVEEPPSRTVFL 180 Query 156 LCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGR 215 LCAPSVDP+DI+VTLRSRCRHVAL +PS I +VL D DG+DP A WAASV GGH+GR Sbjct 181 LCAPSVDPDDISVTLRSRCRHVALTSPSVADIERVLVDRDGIDPAQAAWAASVCGGHIGR 240 Query 216 ARRLATDPQARQRRERALGLARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEEL 275 ARRLATD AR++RE AL LAR A S AY AAEELV AEA + A+ A+ E E EE+ Sbjct 241 ARRLATDADAREQREMALRLARAATVDSTAYKAAEELVRTAEAASKAIAAELNEPELEEM 300 Query 276 RTALGAGGTGKGTGAALRGATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLV 335 +TALGAGGTGKGT A RG+ GA+K+LE+RQKSR+TR RD LDRAL+DLA FRDAL+V Sbjct 301 KTALGAGGTGKGTARAPRGSAGAIKELEKRQKSRETRVGRDVLDRALVDLAALFRDALVV 360 Query 336 AAHAGGVRANHPDMADRVAA-LAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVA 394 A V HPD AD V +A A PE+LL+C+EAVLACREAL VNVKPKFAVDAMVA Sbjct 361 GVGA-QVTPMHPDKADDVVIPMAGFARPEQLLQCVEAVLACREALDVNVKPKFAVDAMVA 419 Query 395 TIGQELR 401 +IG +R Sbjct 420 SIGLAMR 426 >gi|54022332|ref|YP_116574.1| DNA polymerase III subunit delta' [Nocardia farcinica IFM 10152] gi|54013840|dbj|BAD55210.1| putative DNA polymerase III delta' subunit [Nocardia farcinica IFM 10152] Length=410 Score = 456 bits (1173), Expect = 3e-126, Method: Compositional matrix adjust. Identities = 282/399 (71%), Positives = 313/399 (79%), Gaps = 8/399 (2%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 ++GVF RLVGQ AVE+EL A A AAR S G MTH+WL TGPPGSGRSVAALCF Sbjct 11 VAGVFDRLVGQDAVESELTAAAVAARAGSVE-----GAMTHSWLFTGPPGSGRSVAALCF 65 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCT G PGCGRC ACTTT+AGTH DVRRV+PEGLSI EMR IVQIA+RRP+TG Sbjct 66 AAALQCTDPGTPGCGRCHACTTTMAGTHGDVRRVVPEGLSISTKEMREIVQIASRRPSTG 125 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 WQ+VVIEDADRLTE A N LLKVVEEPP TVFLLCAPSVDPEDI+VTLRSRCRHV LV Sbjct 126 RWQVVVIEDADRLTEAAGNVLLKVVEEPPERTVFLLCAPSVDPEDISVTLRSRCRHVHLV 185 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPS AIA VL + DGLD TA WAASVSGGHVGRARRLATD AR+RR+RAL LA AA Sbjct 186 TPSVAAIATVLRERDGLDAKTAEWAASVSGGHVGRARRLATDAHARERRQRALALAAAAA 245 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 P AYAAA+ELV A+ EA ++A+R E E EEL TALGAGGTGKG +A RG+ G +K Sbjct 246 RPGAAYAAADELVKAADDEAKEMSAERDEREREELATALGAGGTGKGAASATRGSAGVLK 305 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLV--AAH-AGGVRANHPDMADRVAALA 357 +LERRQKSR TR RDALDRALID+A +RDAL V AAH A V HPDM +++ LA Sbjct 306 ELERRQKSRATRTGRDALDRALIDVAGLYRDALAVRFAAHDADAVTLTHPDMTEQIHDLA 365 Query 358 AHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATI 396 PPE LLR I+AVLACREAL +NVKP+FAV AMVAT+ Sbjct 366 DRVPPEGLLRSIDAVLACREALDLNVKPRFAVAAMVATL 404 >gi|326383462|ref|ZP_08205149.1| DNA polymerase III subunit delta' [Gordonia neofelifaecis NRRL B-59395] gi|326197868|gb|EGD55055.1| DNA polymerase III subunit delta' [Gordonia neofelifaecis NRRL B-59395] Length=416 Score = 451 bits (1160), Expect = 1e-124, Method: Compositional matrix adjust. Identities = 247/364 (68%), Positives = 282/364 (78%), Gaps = 2/364 (0%) Query 38 TMTHAWLLTGPPGSGRSVAALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPE 97 +MTHAWL TGPPGSGRSVAA CFAAALQC + E GCG CRACTT LAGTH DVR ++PE Sbjct 51 SMTHAWLFTGPPGSGRSVAATCFAAALQCHAPDEVGCGECRACTTVLAGTHGDVRHIVPE 110 Query 98 GLSIGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLC 157 GL+I V ++R IVQ+AARRPTTG WQIVV+EDADRLTE ANALLK VEEPP T+FLLC Sbjct 111 GLTISVAQIRGIVQLAARRPTTGRWQIVVVEDADRLTEQGANALLKAVEEPPDRTIFLLC 170 Query 158 APSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRAR 217 APSV PEDIA+TLRSRCRHV L P+ IA+VL D DG++ D A WAASV+GGHVGRA+ Sbjct 171 APSVAPEDIAITLRSRCRHVGLTAPAAAGIARVLIDRDGIEADRAEWAASVAGGHVGRAK 230 Query 218 RLATDPQARQRRERALGLARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRT 277 RLATD ARQ+R++ALGLAR A S A+AAAE LV A A ++A+R AETEEL T Sbjct 231 RLATDASARQQRDQALGLARAATRDSTAFAAAETLVKTATDAANQISAERDAAETEELMT 290 Query 278 ALGAGGTGKGTGAALRGATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAA 337 ALGAGGTGKGT RG GA+K+LE+RQKSR+TR RD LDRAL+DLA FRD L +A Sbjct 291 ALGAGGTGKGTARPPRGTAGAVKELEKRQKSRRTRTMRDVLDRALVDLAALFRDGLSLAM 350 Query 338 HAGGVRANHPDMA-DRVAALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATI 396 A V HPD A D ++ HA PE+LLRCIEAVL CREAL NVKPKFAVDAMV I Sbjct 351 GA-QVTLMHPDKAQDLTGPMSRHASPEQLLRCIEAVLDCREALETNVKPKFAVDAMVVQI 409 Query 397 GQEL 400 G++L Sbjct 410 GRQL 413 >gi|333917974|ref|YP_004491555.1| DNA-directed DNA polymerase III subunit delta' [Amycolicicoccus subflavus DQS3-9A1] gi|333480195|gb|AEF38755.1| DNA-directed DNA polymerase III subunit delta' [Amycolicicoccus subflavus DQS3-9A1] Length=419 Score = 444 bits (1141), Expect = 2e-122, Method: Compositional matrix adjust. Identities = 255/401 (64%), Positives = 302/401 (76%), Gaps = 6/401 (1%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 ++ VF+ LVGQ+ V EL++ A+AAR AG MTHAWL TGPPGSGRSVAA F Sbjct 23 VANVFSGLVGQEDVVTELISAAEAAR-----GAGSLSGMTHAWLFTGPPGSGRSVAAQSF 77 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQCT G PGCG C AC + + G+HADVRRVIPEGLSI V EMR IVQIA+RRP+ G Sbjct 78 AAALQCTQPGLPGCGGCAACASVMHGSHADVRRVIPEGLSIAVSEMRNIVQIASRRPSVG 137 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 WQ+V+IEDADRLTEGAANALLKVVEEPP TVFLLCAPS DP+DIAVTLRSRCR V L Sbjct 138 RWQVVIIEDADRLTEGAANALLKVVEEPPTHTVFLLCAPSPDPQDIAVTLRSRCRLVVLR 197 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TP AI VL + DGLD +TA WAASV GGHVGRARRLATDP AR+RR + L +AR+A+ Sbjct 198 TPGAEAIEAVLRERDGLDAETARWAASVCGGHVGRARRLATDPLARERRAKVLAIAREAS 257 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 P+ A AA+E++A A +A + A+ E ETEEL+TALGAGGTG+GT ALRGA GA+K Sbjct 258 RPAAAINAADEILATASDDAKTVGAELNEKETEELKTALGAGGTGRGTAGALRGAAGALK 317 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 +LERRQKSR TR +RDA DRAL+DLA +RDAL + A V A HPD+AD +A Sbjct 318 ELERRQKSRATRTARDAFDRALMDLAGLYRDALAFSFDA-SVPATHPDVADTAQQIARDC 376 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 PE LLR I+A+L CREAL NVKP+ A+ AM+A + ++R Sbjct 377 RPEALLRSIDAILECREALDTNVKPELAITAMLAELSAQMR 417 >gi|296141545|ref|YP_003648788.1| DNA polymerase III subunit delta' [Tsukamurella paurometabola DSM 20162] gi|296029679|gb|ADG80449.1| DNA polymerase III, delta prime subunit [Tsukamurella paurometabola DSM 20162] Length=406 Score = 429 bits (1103), Expect = 4e-118, Method: Compositional matrix adjust. Identities = 253/407 (63%), Positives = 302/407 (75%), Gaps = 11/407 (2%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGG------GGTMTHAWLLTGPPGSGRS 54 MSGVF+RLVGQ AV AEL A A+AAR ++GG G MTHAWL TGPPGSGRS Sbjct 1 MSGVFSRLVGQDAVVAELRAAAEAAR--DVVASGGTVADLAGSAMTHAWLFTGPPGSGRS 58 Query 55 VAALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAA 114 VAA AAALQC EPGCG CRACTT LAGTHADVR + P+GLSI V +MR +V A+ Sbjct 59 VAARALAAALQCEDPAEPGCGHCRACTTVLAGTHADVRAIAPDGLSIAVKQMREVVADAS 118 Query 115 RRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRC 174 RRP+ GHWQIV+IEDADRLTE A NALLK+VEEPP T+ LLCAP+VDPEDI+VTL+SRC Sbjct 119 RRPSVGHWQIVLIEDADRLTEQAGNALLKMVEEPPAQTIVLLCAPTVDPEDISVTLKSRC 178 Query 175 RHVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALG 234 RHV LVTPS AIA VL + DG+D + A WAA V GGHVGRA+RLATDP+++++R +AL Sbjct 179 RHVPLVTPSAPAIAAVL-ERDGIDAERAAWAAGVCGGHVGRAKRLATDPESQKQRRQALS 237 Query 235 LARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRG 294 +AR AAT Y E+L+ AE+ A + A E ETEEL+TALGAGGTG+GT +RG Sbjct 238 VAR-AATSEGVYGVVEQLLRDAESAAKEINADLNERETEELKTALGAGGTGRGTAGVMRG 296 Query 295 ATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVA 354 + G +KDLE+RQK+R TR+ RDALDRALIDLA FRDA LV V HPD A++ + Sbjct 297 SAGQLKDLEKRQKARSTRSVRDALDRALIDLAALFRDA-LVQGSGAQVTLMHPDEAEQTS 355 Query 355 ALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR 401 LA +A PE LLRC+E+VL CREA+ +NVKP A+DAM A + LR Sbjct 356 RLAGYARPEGLLRCVESVLDCREAIDLNVKPVVALDAMAAGVSSALR 402 >gi|302530809|ref|ZP_07283151.1| DNA polymerase III [Streptomyces sp. AA4] gi|302439704|gb|EFL11520.1| DNA polymerase III [Streptomyces sp. AA4] Length=399 Score = 423 bits (1088), Expect = 2e-116, Method: Compositional matrix adjust. Identities = 234/396 (60%), Positives = 279/396 (71%), Gaps = 3/396 (0%) Query 3 GVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAA 62 GV+T LVGQ+ L A AA + A MTHAWLLTGPPGSGRSVAA FAA Sbjct 6 GVWTELVGQEPAVETLSTAAAAAAKIVAGEPVAPAAMTHAWLLTGPPGSGRSVAARTFAA 65 Query 63 ALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHW 122 ALQC++G GCG C C TT+AGTHADVR V+PEGLSI V EMRA+VQ AARRPTTG W Sbjct 66 ALQCSTGT--GCGACPGCRTTMAGTHADVRLVVPEGLSISVAEMRALVQAAARRPTTGEW 123 Query 123 QIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTP 182 Q+V+IEDADRLTEGA+NALLK VEEPP TVFLLCAPS PED++VT+RSRCR V L TP Sbjct 124 QVVIIEDADRLTEGASNALLKAVEEPPARTVFLLCAPSDHPEDVSVTIRSRCRLVPLRTP 183 Query 183 STHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATP 242 AIAQVL DG+DP+ A+WAASV GHVGRARRLATD ARQRR L + P Sbjct 184 PAEAIAQVLISRDGVDPERAHWAASVCNGHVGRARRLATDEAARQRRATVLRIPLGLRRP 243 Query 243 SRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDL 302 + +A++L++ AEA+A + R E E ELRTA+G GTGKG A R A A+K L Sbjct 244 DDVFTSADQLISAAEADAGEESKGRDEQERSELRTAMGGDGTGKGVAGAKRAAEAAVKQL 303 Query 303 ERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPP 362 E+RQKSR TR RD LD AL+DLA ++RD L+ + +G HPD A+++ + AA P Sbjct 304 EKRQKSRATRTQRDTLDLALVDLAGFYRDVLVTSTRSGAT-LTHPDHAEQINSAAASWSP 362 Query 363 ERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQ 398 E LR +EAVL CREA+ +NVKP+ AV+AMV T+ Q Sbjct 363 ESTLRRLEAVLECREAIGLNVKPRIAVEAMVTTLRQ 398 >gi|300790591|ref|YP_003770882.1| DNA polymerase III subunit delta' [Amycolatopsis mediterranei U32] gi|299800105|gb|ADJ50480.1| DNA polymerase III subunit delta' [Amycolatopsis mediterranei U32] gi|340532280|gb|AEK47485.1| DNA polymerase III subunit delta' [Amycolatopsis mediterranei S699] Length=401 Score = 410 bits (1054), Expect = 2e-112, Method: Compositional matrix adjust. Identities = 230/396 (59%), Positives = 275/396 (70%), Gaps = 3/396 (0%) Query 3 GVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAA 62 GV+ +LVGQ+ L A A AA + A G MTHAWLLTGPPGSGRSVAA FAA Sbjct 8 GVWNQLVGQEPAVETLSAAASAAAKIVAGEPAPPGAMTHAWLLTGPPGSGRSVAARTFAA 67 Query 63 ALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHW 122 ALQC++G GC C C TT+AGTHADVR V+PEGLSI V EMRA+VQ AARRPTTG W Sbjct 68 ALQCSTGT--GCDACPGCHTTMAGTHADVRLVVPEGLSISVAEMRALVQAAARRPTTGKW 125 Query 123 QIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTP 182 Q+V+IEDADRLTEGA+NALLK VEEPP TVFLLCAPS P+D++VT+RSRCR V L TP Sbjct 126 QVVIIEDADRLTEGASNALLKAVEEPPDRTVFLLCAPSDHPDDVSVTIRSRCRLVTLRTP 185 Query 183 STHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATP 242 AIA VL D +D + A WAASV GGHVGRARRLATD ARQRR L + Sbjct 186 PPEAIADVLVRRDHVDAERAQWAASVCGGHVGRARRLATDEAARQRRATVLRIPLGLRRA 245 Query 243 SRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDL 302 S + A++L++ AEA+A + R E E ELRTA+G G GKG A R A A+K L Sbjct 246 SDVFTCADQLISAAEADAGEASKSRDEDERNELRTAMGGDGIGKGVAGAKRAAEAAVKQL 305 Query 303 ERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPP 362 E++QKSR TR RD LD AL+DL ++RD L+V + +G NHPD AD++ A+ P Sbjct 306 EKKQKSRATRTQRDTLDLALVDLVGFYRDVLVVGSRSGAT-LNHPDHADQIREAASAWTP 364 Query 363 ERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQ 398 E LR +EAVL CREA+ +NVKP+ AV+AMV T+ Q Sbjct 365 ESTLRRLEAVLECREAIDLNVKPRIAVEAMVTTLRQ 400 >gi|257057528|ref|YP_003135360.1| DNA polymerase III, delta prime subunit [Saccharomonospora viridis DSM 43017] gi|256587400|gb|ACU98533.1| DNA polymerase III, delta prime subunit [Saccharomonospora viridis DSM 43017] Length=406 Score = 400 bits (1027), Expect = 3e-109, Method: Compositional matrix adjust. Identities = 230/393 (59%), Positives = 285/393 (73%), Gaps = 3/393 (0%) Query 4 VFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAA 63 V+++LVGQ+ L A A++A + G+MTHAWL TGPPGSGRSVAA FAAA Sbjct 14 VWSQLVGQEPAVETLSAAAESAAALVSGRTTDPGSMTHAWLFTGPPGSGRSVAARTFAAA 73 Query 64 LQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHWQ 123 LQCT + GCGRC+ C TTLAGTHADV+ V+PEGLSI V EMRA+VQ AARRPTTG WQ Sbjct 74 LQCTV--DAGCGRCQGCHTTLAGTHADVKLVVPEGLSISVSEMRALVQAAARRPTTGRWQ 131 Query 124 IVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPS 183 IV+IEDADRLTEGA+NALLK VEEPP TVFLLCAPS P+DI++T+RSRCR V L TPS Sbjct 132 IVIIEDADRLTEGASNALLKAVEEPPERTVFLLCAPSDHPDDISITIRSRCRTVNLRTPS 191 Query 184 THAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATPS 243 AIA VL + DG+DP+ A WAASV GGHVGRARRLATD AR RR L + Sbjct 192 PEAIATVLVERDGIDPERARWAASVCGGHVGRARRLATDENARARRAAVLRIPLGLRRAE 251 Query 244 RAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDLE 303 + A+EL++ AEA+A ++ R EAE + LRTA+G+GGTGKG AA R A A++ LE Sbjct 252 DVFRCADELISTAEADATEVSKARDEAEQDALRTAMGSGGTGKGVAAAKRAADAAVRALE 311 Query 304 RRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPPE 363 ++QKSR TR RD LD AL+DLA ++RD L++++ + NHPD+A++ A A P Sbjct 312 KKQKSRATRTQRDTLDLALMDLAGFYRDVLVLSSGSDAA-LNHPDVAEQAAEAAREWTPV 370 Query 364 RLLRCIEAVLACREALAVNVKPKFAVDAMVATI 396 LR +EAVLACR+A+A NVKP+ AV+AM+ T+ Sbjct 371 STLRRLEAVLACRDAIAWNVKPRVAVEAMLTTL 403 >gi|134096992|ref|YP_001102653.1| DNA polymerase III, delta' subunit [Saccharopolyspora erythraea NRRL 2338] gi|291006263|ref|ZP_06564236.1| DNA polymerase III, delta' subunit [Saccharopolyspora erythraea NRRL 2338] gi|133909615|emb|CAL99727.1| DNA polymerase III, delta' subunit [Saccharopolyspora erythraea NRRL 2338] Length=403 Score = 396 bits (1018), Expect = 3e-108, Method: Compositional matrix adjust. Identities = 238/396 (61%), Positives = 283/396 (72%), Gaps = 5/396 (1%) Query 2 SGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFA 61 +GV+ +VGQ L A +AA + G MTHAWL TGPPGSGRSVAA FA Sbjct 9 TGVWADVVGQPEAVRTLRAAVRAADLLARGEPAPAGAMTHAWLFTGPPGSGRSVAARSFA 68 Query 62 AALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGH 121 AALQCTSG GCG C AC T AGTHADVR V+PEGLSI V EMR++VQ +ARRPTTG Sbjct 69 AALQCTSG--EGCGHCSACRTVQAGTHADVRVVVPEGLSISVSEMRSLVQASARRPTTGQ 126 Query 122 WQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVT 181 W++V+IED+DRLTEGA+NALLK VEEPP TVFLLCAPS PED++VT+RSRCR V L T Sbjct 127 WRVVLIEDSDRLTEGASNALLKAVEEPPDRTVFLLCAPSDHPEDVSVTIRSRCRVVQLKT 186 Query 182 PSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAAT 241 P AIA+VL++ DG++P A WAASVSGGH+GRARRLATD +AR+RRE L + Sbjct 187 PRPDAIAEVLAERDGIEPRMAQWAASVSGGHIGRARRLATDGEARERREAVLSVPLGLRR 246 Query 242 PSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKD 301 S + AA LV +E +A+A R EAE EELRTA+GAGGTGKGT AA RGA A+++ Sbjct 247 FSDVFTAAGGLVKASETDAVAANEDRNEAEKEELRTAMGAGGTGKGTAAATRGANAAIRE 306 Query 302 LERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRA-NHPDMADRVAALAAHA 360 LE+RQKSR TR+ RDALD AL+DLA ++RD L+V +G A NHPD A V+ AA Sbjct 307 LEKRQKSRATRSQRDALDLALVDLAGFYRDVLVV--RSGSTAALNHPDFARSVSKAAAEW 364 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATI 396 E LR +EAVLACR AL NVKP AV+AM A + Sbjct 365 TSESTLRRLEAVLACRLALTQNVKPIIAVEAMAAAL 400 >gi|319951222|ref|ZP_08025060.1| DNA polymerase III subunit delta' [Dietzia cinnamea P4] gi|319435121|gb|EFV90403.1| DNA polymerase III subunit delta' [Dietzia cinnamea P4] Length=405 Score = 392 bits (1008), Expect = 5e-107, Method: Compositional matrix adjust. Identities = 238/402 (60%), Positives = 282/402 (71%), Gaps = 9/402 (2%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGT-----MTHAWLLTGPPGSGRSV 55 M GVF RL GQ V AEL A A AA A G G M HAWL TGPPGSGRSV Sbjct 1 MPGVFERLAGQADVVAELTAAAMAA---RARVPGQGWDESDPRMVHAWLFTGPPGSGRSV 57 Query 56 AALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAAR 115 AA+ FAAALQC GCGRCRAC T LAGTHADV + P+G++I + +++ + AA Sbjct 58 AAMAFAAALQCEDPDVVGCGRCRACHTVLAGTHADVHLLAPQGVNILLKDVKETIHRAAS 117 Query 116 RPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCR 175 RP TG WQIVV+E+ADRLTE + NALLKVVEEPP TVFLLC+P+ DP DI VTLRSR R Sbjct 118 RPGTGRWQIVVVEEADRLTEQSGNALLKVVEEPPSRTVFLLCSPTTDPMDIMVTLRSRSR 177 Query 176 HVALVTPSTHAIAQ-VLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALG 234 +VAL P+ A+ + +L+DGD +DPD A WAASVS GHVGRAR LATD R+RR+ L Sbjct 178 NVALHQPNAEAVERALLADGDAIDPDLARWAASVSSGHVGRARWLATDEATRERRDVVLQ 237 Query 235 LARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRG 294 L P RA+ A LV+ AE EALA ++ E E EELRTALGAGGTGKGT +A RG Sbjct 238 LPMVMHNPGRAFPLASRLVSSAEQEALARNSESDEREVEELRTALGAGGTGKGTASAGRG 297 Query 295 ATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVA 354 ATGA+K+LER QKSR+TR++RD+LD AL+DLA+++RDAL+VA A V A HPD A+ A Sbjct 298 ATGAVKELERAQKSRRTRSTRDSLDLALVDLASFYRDALMVALGARDVAAVHPDKAEEAA 357 Query 355 ALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATI 396 L H +L+ IEAV CR A+ VNVKPKFAV AMV I Sbjct 358 RLGGHYSAASILKAIEAVQECRAAIEVNVKPKFAVSAMVGAI 399 >gi|254821838|ref|ZP_05226839.1| DNA polymerase III subunit delta' [Mycobacterium intracellulare ATCC 13950] Length=225 Score = 382 bits (981), Expect = 6e-104, Method: Compositional matrix adjust. Identities = 193/224 (87%), Positives = 203/224 (91%), Gaps = 3/224 (1%) Query 1 MSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCF 60 MSGVF RLVGQ AV AELLA A+A+R D AHS G GTMTHAWL+TGPPGSGRSVAALCF Sbjct 2 MSGVFARLVGQDAVTAELLAAARASRGDPAHSEAGAGTMTHAWLITGPPGSGRSVAALCF 61 Query 61 AAALQCTS---GGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRP 117 AAALQCTS G PGCGRC ACTTT+AGTH+DVRRVIPEGLSIGVDEMRAIVQIA+RRP Sbjct 62 AAALQCTSTVEDGGPGCGRCHACTTTMAGTHSDVRRVIPEGLSIGVDEMRAIVQIASRRP 121 Query 118 TTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHV 177 TGH QIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIA+TLRSRCRHV Sbjct 122 ATGHRQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAITLRSRCRHV 181 Query 178 ALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLAT 221 ALVTPST AIA+VL D DGL P+TA+WAASVSGGHVGRARRLAT Sbjct 182 ALVTPSTEAIARVLVDSDGLSPETADWAASVSGGHVGRARRLAT 225 >gi|258650990|ref|YP_003200146.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233] gi|258554215|gb|ACV77157.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233] Length=412 Score = 377 bits (968), Expect = 2e-102, Method: Compositional matrix adjust. Identities = 222/396 (57%), Positives = 277/396 (70%), Gaps = 13/396 (3%) Query 4 VFTRLVGQQ-AVEAELLATAKAARRDSAHSAGG--GGTMTHAWLLTGPPGSGRSVAALCF 60 VF L+GQQ A+E LA A ++H G G MTHAWL TGP GSGRSVAA F Sbjct 17 VFDDLIGQQHAIEELSLAVA------ASHGDPGVPGAAMTHAWLFTGPAGSGRSVAARAF 70 Query 61 AAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTG 120 AAALQC + GCG C C T A TH+DVR VIPEGL+I V EMR +VQ+AAR P G Sbjct 71 AAALQC---ADRGCGHCSHCRTVAAHTHSDVRAVIPEGLTISVKEMRQVVQLAARSPAAG 127 Query 121 HWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALV 180 +QIV+IEDADRLTEGA+NALLK VEEP TVFLLCAPS P+D++VT+RSRCR V L Sbjct 128 RYQIVLIEDADRLTEGASNALLKAVEEPAEHTVFLLCAPSTHPDDVSVTIRSRCRVVGLR 187 Query 181 TPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAA 240 TPS AIA VL+ DG+DP+TA+WAASV+ GHVGRARRLA D QAR++R + L L A Sbjct 188 TPSAPAIADVLARRDGVDPETAHWAASVAAGHVGRARRLARDEQAREQRRQVLALPTSLA 247 Query 241 TPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMK 300 + + + + EL+A A+ EA +++ R AE EEL+TALGAGGTGKG A RG+ G +K Sbjct 248 SVADVFEQSAELLARAKGEASSMSQTRDAAEIEELKTALGAGGTGKGAVGAARGSAGVVK 307 Query 301 DLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHA 360 ++ERRQKSR TR RD LDRAL+DL+ ++RD L + + N PDM +V A+A Sbjct 308 EMERRQKSRATRTERDVLDRALVDLSGFYRDVLARSLGSTAPLLN-PDMPGQVDAVAKRL 366 Query 361 PPERLLRCIEAVLACREALAVNVKPKFAVDAMVATI 396 P+ L ++AVLACREA+ +NVKP+ A++AMV + Sbjct 367 GPDGALAAVDAVLACREAIELNVKPQIAIEAMVMAL 402 >gi|256374449|ref|YP_003098109.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827] gi|255918752|gb|ACU34263.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827] Length=399 Score = 373 bits (958), Expect = 3e-101, Method: Compositional matrix adjust. Identities = 223/395 (57%), Positives = 275/395 (70%), Gaps = 3/395 (0%) Query 3 GVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAA 62 GV++ +VGQ L A A+AA A G MTHAWL TGPPGSGR+ AA FA Sbjct 4 GVWSEVVGQPDAVTVLSAAAEAAAAIVAGGTPAPGAMTHAWLFTGPPGSGRTEAARAFAG 63 Query 63 ALQCTSGGE-PGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGH 121 ALQCT+ + PGCG C C T LAGTHADVR V PEGLSI V+EMRA+VQ++ARRPT+G Sbjct 64 ALQCTAADDRPGCGVCAGCHTALAGTHADVRVVAPEGLSISVNEMRALVQVSARRPTSGR 123 Query 122 WQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVT 181 WQ+V++ DADRLTEGA+NALLK VEEPP TVFLLCAPS P D++VT+RSRCR V L + Sbjct 124 WQVVIVADADRLTEGASNALLKAVEEPPDRTVFLLCAPSEHPYDVSVTIRSRCRVVRLGS 183 Query 182 PSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAAT 241 P +A L + +G+ PD A+W+ASV+GG+V RARRLATD Q+R RRE L + Sbjct 184 PKVPDVAAALEE-EGVAPDLASWSASVTGGNVVRARRLATDEQSRLRRESVLAIPLALRR 242 Query 242 PSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKD 301 P+ + A++LV AE +AL+ R E E + L TA+GAGGTGKGT +A RGA GA+KD Sbjct 243 PADVFTCADDLVKAAEGDALSANEDRDEQERKALETAMGAGGTGKGTASATRGAKGALKD 302 Query 302 LERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAP 361 LE+RQKSR TR RD+LD+AL+DLA ++RD +LV A NHPD A AA Sbjct 303 LEKRQKSRATRTQRDSLDQALVDLAAFYRD-VLVTATGSEAALNHPDRAADARTAAAAWS 361 Query 362 PERLLRCIEAVLACREALAVNVKPKFAVDAMVATI 396 E LR +EAVLACR AL NVKP+ AV+AM+ T+ Sbjct 362 RESTLRRLEAVLACRGALERNVKPRIAVEAMLTTL 396 >gi|324997955|ref|ZP_08119067.1| DNA polymerase III, delta' subunit [Pseudonocardia sp. P1] Length=383 Score = 369 bits (948), Expect = 4e-100, Method: Compositional matrix adjust. Identities = 223/358 (63%), Positives = 257/358 (72%), Gaps = 4/358 (1%) Query 39 MTHAWLLTGPPGSGRSVAALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEG 98 MTHAWL TGPPGSGRS AA FAAALQC G CG C AC TTLAGTH+DVR + PEG Sbjct 27 MTHAWLFTGPPGSGRSNAARAFAAALQCPYDG---CGECAACRTTLAGTHSDVREINPEG 83 Query 99 LSIGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCA 158 LSI VDEMRA+VQ+AARRP TG WQIV+I DADRLTEGA+NALLK VEEP P TV+LLCA Sbjct 84 LSIKVDEMRALVQLAARRPATGTWQIVIIADADRLTEGASNALLKAVEEPAPETVWLLCA 143 Query 159 PSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARR 218 PS PED+ VT+RSRCR V L +PS A+A VL D DG++P+ A WAASV GGHVGRARR Sbjct 144 PSDHPEDVPVTIRSRCRPVQLRSPSAEAVAGVLRDRDGIEPEQAQWAASVCGGHVGRARR 203 Query 219 LATDPQARQRRERALGLARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTA 278 LA DPQAR RRE L + A+ A+ L+ AE EA L A R EAE EEL A Sbjct 204 LARDPQARSRREEILAVPTRLRRLGDAFFHADVLIRSAEGEAEELRASRDEAEREELAVA 263 Query 279 LGAGGTGKGTGAALRGATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAH 338 +GAGGTGKG +A R A A +DLE+RQKSR TR RDALDRAL+DLA ++RDA +VAA Sbjct 264 MGAGGTGKGAASAARSAKAAERDLEKRQKSRATRTQRDALDRALVDLAGFYRDA-IVAAS 322 Query 339 AGGVRANHPDMADRVAALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATI 396 V +PD + AA PE LR +EAVLACR+AL NVKP+ AV+AM+ + Sbjct 323 GAQVPLANPDRDREIRVAAAEWGPESSLRRLEAVLACRDALEQNVKPRIAVEAMMTAL 380 >gi|291298370|ref|YP_003509648.1| DNA polymerase III subunit delta' [Stackebrandtia nassauensis DSM 44728] gi|290567590|gb|ADD40555.1| DNA polymerase III, delta prime subunit [Stackebrandtia nassauensis DSM 44728] Length=389 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 209/399 (53%), Positives = 267/399 (67%), Gaps = 12/399 (3%) Query 1 MSG-VFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALC 59 M+G +F RL+GQ+ + + T A + A G MTHAWL TGPPGSGRSVAA Sbjct 1 MTGEIFDRLIGQE----DTVQTLTDAVAAATSGAAG---MTHAWLFTGPPGSGRSVAARA 53 Query 60 FAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTT 119 FAAALQC + GCG C AC T L GTHADV VIP+G++IGV MR ++ A R P T Sbjct 54 FAAALQCPN---QGCGSCPACHTVLGGTHADVTHVIPDGVTIGVSVMRDLIGTAQRAPGT 110 Query 120 GHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVAL 179 G W+++VIEDADRLTE A NALLK +EEPP TVFLLCAPS +P +I+VT+RSRCR V L Sbjct 111 GRWRVLVIEDADRLTEAAGNALLKSIEEPPERTVFLLCAPSSNPAEISVTIRSRCRLVPL 170 Query 180 VTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDA 239 PS A+A++L DG+DP A AS + GHVGRA+RLATDPQAR RR+ LG+ R Sbjct 171 RQPSVAAVARLLETRDGVDPSLARLCASAAQGHVGRAKRLATDPQARDRRDTVLGVPRQL 230 Query 240 ATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAM 299 ++ + AA+ ++ +E+EA T + E E EL TALG GGTGKG A RG G + Sbjct 231 SSVGACFTAADAIIEASESEATDATKGQAEREIAELETALGKGGTGKGASKATRGNAGQI 290 Query 300 KDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAH 359 K+LERRQK R TRA RD LDRAL+DLA ++RD +L+ V HPD A+ V A A+ Sbjct 291 KELERRQKMRLTRAQRDTLDRALVDLAAFYRD-VLIQGLGARVDPIHPDAAEAVTAAASR 349 Query 360 APPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQ 398 PE ++R I+A+L CR A+ NV+P+ AV++M+ + Q Sbjct 350 WSPESVIRRIDAILQCRIAIDRNVRPRIAVESMMLKLWQ 388 >gi|145596533|ref|YP_001160830.1| DNA polymerase III subunit delta' [Salinispora tropica CNB-440] gi|145305870|gb|ABP56452.1| DNA polymerase III, delta prime subunit [Salinispora tropica CNB-440] Length=427 Score = 358 bits (919), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 219/358 (62%), Positives = 255/358 (72%), Gaps = 3/358 (0%) Query 36 GGTMTHAWLLTGPPGSGRSVAALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVI 95 G MTHAW+ TGPPGSGRSVAA FAAALQC G GCG C C TT+AGTHADVR V+ Sbjct 67 GAGMTHAWIFTGPPGSGRSVAARAFAAALQCGHGS--GCGACPGCHTTMAGTHADVRLVV 124 Query 96 PEGLSIGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFL 155 P+GLSIGV+EMRA+V AA P+ G WQ+VVIEDADRLTE A NALLK VEEPPP TVFL Sbjct 125 PDGLSIGVNEMRALVLRAASTPSGGRWQVVVIEDADRLTEAAGNALLKAVEEPPPRTVFL 184 Query 156 LCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGR 215 LCAPS+ P+DI+VT+RSRCR V L P+ A+A+VL DG++PD ANWAA+ + GHVGR Sbjct 185 LCAPSIHPDDISVTIRSRCRVVPLRQPAPAAVAEVLVRRDGVEPDVANWAAAAAQGHVGR 244 Query 216 ARRLATDPQARQRRERALGLARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEEL 275 ARRLA DPQAR RR+ L + R A AA L+ AEAEA AL A AE L Sbjct 245 ARRLARDPQARTRRDAVLAVPRQLTGVGAAIDAAAALIGAAEAEAAALVADTDAAERAAL 304 Query 276 RTALGAGGTGKGTGAALRGATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLV 335 TALGAGGTG+ +A RGA G +K+LERRQKSR TRA RDALDRAL+DLA ++RDAL + Sbjct 305 ETALGAGGTGRRAASAFRGAAGQVKELERRQKSRATRAQRDALDRALVDLAGFYRDALTM 364 Query 336 AAHAGGVRANHPDMADRVAALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMV 393 A A V H D A A A + LR +EAVLACR A+ NVKP+ AV+AM+ Sbjct 365 ALGA-PVEPVHTDTATVAGAGARKWEADGALRRLEAVLACRAAIEANVKPRIAVEAMM 421 >gi|237786522|ref|YP_002907227.1| DNA polymerase III subunit delta' [Corynebacterium kroppenstedtii DSM 44385] gi|237759434|gb|ACR18684.1| DNA polymerase III, delta' subunit [Corynebacterium kroppenstedtii DSM 44385] Length=452 Score = 355 bits (912), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 202/384 (53%), Positives = 261/384 (68%), Gaps = 12/384 (3%) Query 19 LATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAALQCTSGGEPGCGRCR 78 LA A+ SAH MTHAWL TGPPG+GRSVAA FAA+L C PGCG+C Sbjct 69 LAGLPASAHQSAH-------MTHAWLFTGPPGAGRSVAAKAFAASLMCKEE-TPGCGQCE 120 Query 79 ACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAA 138 AC T LAGTH D+ ++PEG+ I V ++R +++ A+R PTT W++V++EDADRL + A Sbjct 121 ACRTALAGTHTDIVTIVPEGVVIPVKQVRDMIEAASRMPTTAQWRVVIVEDADRLNDAGA 180 Query 139 NALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGD--G 196 NALLK +EEPPP TVF+LCAPS DP+D+ VT+RSRCRHV + TPS + +L+D G Sbjct 181 NALLKSIEEPPPRTVFILCAPSTDPDDVHVTIRSRCRHVYIPTPSIDEVKHILADDTALG 240 Query 197 LDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATPSRAYAAAEELVAGA 256 L +WAASVSGGHVGRA+RLA+D QAR +R+RAL + AY ELVA A Sbjct 241 LTDKQIDWAASVSGGHVGRAKRLASDDQARTQRQRALRVPEKVYQDGDAYLYTGELVASA 300 Query 257 EAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDLERRQKSRQTRASRD 316 + EA A TA+R EAE +LR ALG G G+G A RG+ GAMK+LE +QK+R+TR D Sbjct 301 KKEAEAATAERDEAELAKLREALGVGAKGRGAAKAQRGSAGAMKELETKQKNRRTRMVID 360 Query 317 ALDRALIDLATYFRDALLVAAHAGG--VRANHPDMADRVAALAAHAPPERLLRCIEAVLA 374 LD +L+D+A +RDAL+V+ +AGG V A HPD A+ A LA PE+LL+C++AV Sbjct 361 LLDLSLMDIAGLYRDALMVSVNAGGGRVPAIHPDHANTAAELARRNTPEQLLQCVDAVRM 420 Query 375 CREALAVNVKPKFAVDAMVATIGQ 398 RE LA V+ + A+DAMV + Q Sbjct 421 GRELLASGVRQEGALDAMVGRLRQ 444 >gi|334564237|ref|ZP_08517228.1| DNA polymerase III subunit delta' [Corynebacterium bovis DSM 20582] Length=408 Score = 355 bits (910), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 201/378 (54%), Positives = 245/378 (65%), Gaps = 20/378 (5%) Query 33 AGGGGTMTHAWLLTGPPGSGRSVAALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVR 92 A G G MTH+WLLTGPPGSGRSVAA FA AL C GCGRC C + AGTH DV Sbjct 22 AAGSGVMTHSWLLTGPPGSGRSVAAKAFATALVCDDPDVVGCGRCDQCRSVRAGTHPDVE 81 Query 93 RVIPEGLSIGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPST 152 V EG++I VD++RA+++ AA+ PT W++VV+EDADRL +GAANALLK VEEPP T Sbjct 82 WVSTEGMTITVDDVRAVIRSAAKMPTVARWRVVVVEDADRLGDGAANALLKSVEEPPART 141 Query 153 VFLLCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVL--SDGDGLDPDTANWAASVSG 210 VF+LCAPS DP DIAVTLRSRCRH+ + TPS + Q L GL + A WAA VSG Sbjct 142 VFVLCAPSTDPHDIAVTLRSRCRHLYVPTPSPAEVEQALLADTALGLTAEQAAWAAGVSG 201 Query 211 GHVGRARRLATDPQARQRRERALGLARDAATPSRAYAAAEELVAGAEAEALALTAQRIEA 270 GH+GRAR LA D AR++R AL L + P+R + LVA A EA A + Sbjct 202 GHIGRARHLARDAVAREKRATALTLPKLVYEPARLFMFTRSLVAKAGEEAAASVEETERR 261 Query 271 ETEELRTALGAGGTGKGTGAALRGATGAMKDLERRQKSRQTRASRDALDRALIDLATYFR 330 E E L ++LG G GKG A RGA+G +K+LE+ QK+R+TR RD+LD ALID+A +R Sbjct 262 EREALESSLGVGSKGKGAAKAQRGASGQLKELEKEQKNRRTRLLRDSLDLALIDVAGLYR 321 Query 331 DALLVAAHA----------------GGVRANHPDMADRVAALAAHAPPERLLRCIEAVLA 374 DA+L+AA A GG+ HPDMA LA PE L+RCI+AV A Sbjct 322 DAMLIAAGAVEAAPGDDGDGHGVPVGGL--MHPDMAATSRELARRNSPEALVRCIDAVAA 379 Query 375 CREALAVNVKPKFAVDAM 392 CREAL NVKP+ A+DAM Sbjct 380 CREALGFNVKPEVALDAM 397 Lambda K H 0.318 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 791831954088 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40