BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3648c
Length=67
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610784|ref|NP_218165.1| cold shock protein A [Mycobacterium... 139 1e-31
gi|240173035|ref|ZP_04751693.1| putative cold shock protein A [M... 138 3e-31
gi|15827003|ref|NP_301266.1| cold shock protein [Mycobacterium l... 137 7e-31
gi|120406346|ref|YP_956175.1| cold-shock DNA-binding domain-cont... 133 1e-29
gi|108801761|ref|YP_641958.1| cold-shock DNA-binding family prot... 133 1e-29
gi|145221984|ref|YP_001132662.1| cold-shock DNA-binding domain-c... 132 1e-29
gi|169627591|ref|YP_001701240.1| cold shock protein A [Mycobacte... 132 2e-29
gi|333992573|ref|YP_004525187.1| cold shock protein A CspA_1 [My... 132 2e-29
gi|54022330|ref|YP_116572.1| putative cold shock protein [Nocard... 126 1e-27
gi|312138017|ref|YP_004005353.1| cold shock protein [Rhodococcus... 124 5e-27
gi|111021327|ref|YP_704299.1| cold shock protein A [Rhodococcus ... 124 6e-27
gi|226304000|ref|YP_002763958.1| cold shock protein [Rhodococcus... 123 1e-26
gi|237786535|ref|YP_002907240.1| cold shock protein [Corynebacte... 120 6e-26
gi|296141549|ref|YP_003648792.1| cold-shock DNA-binding domain-c... 119 1e-25
gi|38232941|ref|NP_938708.1| cold-shock protein [Corynebacterium... 119 1e-25
gi|336326562|ref|YP_004606528.1| cold shock protein A [Corynebac... 119 1e-25
gi|296118095|ref|ZP_06836677.1| putative cold shock protein [Cor... 118 3e-25
gi|262200587|ref|YP_003271795.1| cold-shock protein DNA-binding ... 118 3e-25
gi|343926494|ref|ZP_08765999.1| putative cold shock protein [Gor... 117 4e-25
gi|333920303|ref|YP_004493884.1| putative cold shock protein A [... 117 5e-25
gi|300857641|ref|YP_003782624.1| cold shock-like protein A [Cory... 117 5e-25
gi|326383466|ref|ZP_08205153.1| cold shock protein [Gordonia neo... 117 5e-25
gi|68537049|ref|YP_251754.1| putative cold shock protein [Coryne... 117 5e-25
gi|302529053|ref|ZP_07281395.1| cold shock domain-containing pro... 116 1e-24
gi|259505713|ref|ZP_05748615.1| cold shock protein [Corynebacter... 115 2e-24
gi|334563527|ref|ZP_08516518.1| putative cold shock protein [Cor... 115 2e-24
gi|300779976|ref|ZP_07089832.1| cold shock protein CspA [Coryneb... 115 2e-24
gi|227549696|ref|ZP_03979745.1| cold-shock protein [Corynebacter... 115 2e-24
gi|25029285|ref|NP_739339.1| hypothetical protein CE2729 [Coryne... 115 3e-24
gi|254818580|ref|ZP_05223581.1| cold-shock DNA-binding protein f... 114 7e-24
gi|319948998|ref|ZP_08023098.1| cold-shock protein [Dietzia cinn... 113 8e-24
gi|172041529|ref|YP_001801243.1| putative cold shock protein [Co... 113 1e-23
gi|340795411|ref|YP_004760874.1| cold shock-like protein A [Cory... 112 1e-23
gi|19551424|ref|NP_599426.1| cold shock protein [Corynebacterium... 112 3e-23
gi|145294296|ref|YP_001137117.1| hypothetical protein cgR_0252 [... 111 4e-23
gi|226365143|ref|YP_002782926.1| cold shock protein [Rhodococcus... 111 4e-23
gi|145294439|ref|YP_001137260.1| hypothetical protein cgR_0394 [... 111 4e-23
gi|111022638|ref|YP_705610.1| cold shock protein [Rhodococcus jo... 110 5e-23
gi|111021610|ref|YP_704582.1| cold shock protein [Rhodococcus jo... 110 6e-23
gi|226307843|ref|YP_002767803.1| cold shock protein [Rhodococcus... 110 6e-23
gi|312138659|ref|YP_004005995.1| cold shock protein [Rhodococcus... 109 1e-22
gi|19551558|ref|NP_599560.1| cold shock protein [Corynebacterium... 109 1e-22
gi|108799262|ref|YP_639459.1| cold-shock DNA-binding family prot... 109 1e-22
gi|213966043|ref|ZP_03394232.1| conserved domain protein [Coryne... 109 2e-22
gi|25026862|ref|NP_736916.1| putative cold shock protein [Coryne... 109 2e-22
gi|184200633|ref|YP_001854840.1| cold shock protein [Kocuria rhi... 108 2e-22
gi|312138714|ref|YP_004006050.1| cold shock protein [Rhodococcus... 108 2e-22
gi|269793596|ref|YP_003313051.1| cold-shock DNA-binding protein ... 108 3e-22
gi|111017609|ref|YP_700581.1| cold shock protein [Rhodococcus jo... 108 3e-22
gi|325676595|ref|ZP_08156273.1| cold shock transcription regulat... 107 4e-22
>gi|15610784|ref|NP_218165.1| cold shock protein A [Mycobacterium tuberculosis H37Rv]
gi|15843260|ref|NP_338297.1| cold-shock domain-contain protein [Mycobacterium tuberculosis
CDC1551]
gi|31794818|ref|NP_857311.1| cold shock protein A [Mycobacterium bovis AF2122/97]
84 more sequence titles
Length=67
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/67 (100%), Positives = 67/67 (100%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ
Sbjct 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
Query 61 ATGVRSL 67
ATGVRSL
Sbjct 61 ATGVRSL 67
>gi|240173035|ref|ZP_04751693.1| putative cold shock protein A [Mycobacterium kansasii ATCC 12478]
gi|254821833|ref|ZP_05226834.1| putative cold shock protein A [Mycobacterium intracellulare ATCC
13950]
gi|342862014|ref|ZP_08718658.1| putative cold shock protein A CSPA [Mycobacterium colombiense
CECT 3035]
gi|342130554|gb|EGT83863.1| putative cold shock protein A CSPA [Mycobacterium colombiense
CECT 3035]
Length=67
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/67 (99%), Positives = 67/67 (100%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQG+GFRTLEENQKVEFEIGHSPKGPQ
Sbjct 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQKVEFEIGHSPKGPQ 60
Query 61 ATGVRSL 67
ATGVRSL
Sbjct 61 ATGVRSL 67
>gi|15827003|ref|NP_301266.1| cold shock protein [Mycobacterium leprae TN]
gi|118619394|ref|YP_907726.1| cold shock protein A CspA_1 [Mycobacterium ulcerans Agy99]
gi|183985108|ref|YP_001853399.1| cold shock protein A CspA_1 [Mycobacterium marinum M]
8 more sequence titles
Length=67
Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/67 (98%), Positives = 67/67 (100%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQG+GFRTLEENQKVEFEIGHSPKGPQ
Sbjct 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQKVEFEIGHSPKGPQ 60
Query 61 ATGVRSL 67
ATGVRS+
Sbjct 61 ATGVRSV 67
>gi|120406346|ref|YP_956175.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
vanbaalenii PYR-1]
gi|119959164|gb|ABM16169.1| cold-shock DNA-binding protein family [Mycobacterium vanbaalenii
PYR-1]
Length=67
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/67 (93%), Positives = 66/67 (99%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQG+GFRTLEENQKVEFE+G SPKGPQ
Sbjct 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPKGPQ 60
Query 61 ATGVRSL 67
ATGVR++
Sbjct 61 ATGVRAI 67
>gi|108801761|ref|YP_641958.1| cold-shock DNA-binding family protein [Mycobacterium sp. MCS]
gi|118473705|ref|YP_890379.1| hypothetical protein MSMEG_6159 [Mycobacterium smegmatis str.
MC2 155]
gi|119870912|ref|YP_940864.1| cold-shock DNA-binding family protein [Mycobacterium sp. KMS]
7 more sequence titles
Length=67
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/67 (93%), Positives = 66/67 (99%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQG+GFRTLEENQKVEFE+G SPKGPQ
Sbjct 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPKGPQ 60
Query 61 ATGVRSL 67
ATGVR++
Sbjct 61 ATGVRTI 67
>gi|145221984|ref|YP_001132662.1| cold-shock DNA-binding domain-containing protein [Mycobacterium
gilvum PYR-GCK]
gi|315446276|ref|YP_004079155.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
gi|145214470|gb|ABP43874.1| cold-shock DNA-binding protein family [Mycobacterium gilvum PYR-GCK]
gi|315264579|gb|ADU01321.1| cold-shock DNA-binding protein family [Mycobacterium sp. Spyr1]
Length=67
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/67 (93%), Positives = 66/67 (99%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQG+GFRTLEENQKVEFE+G SPKGPQ
Sbjct 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPKGPQ 60
Query 61 ATGVRSL 67
ATGVR++
Sbjct 61 ATGVRAV 67
>gi|169627591|ref|YP_001701240.1| cold shock protein A [Mycobacterium abscessus ATCC 19977]
gi|169239558|emb|CAM60586.1| Probable cold shock protein A (CspA) [Mycobacterium abscessus]
Length=67
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/67 (93%), Positives = 65/67 (98%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQG GFRTLEENQKVEFE+G SPKGPQ
Sbjct 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGNGFRTLEENQKVEFEVGQSPKGPQ 60
Query 61 ATGVRSL 67
ATGVR++
Sbjct 61 ATGVRAV 67
>gi|333992573|ref|YP_004525187.1| cold shock protein A CspA_1 [Mycobacterium sp. JDM601]
gi|333488541|gb|AEF37933.1| cold shock protein A CspA_1 [Mycobacterium sp. JDM601]
Length=67
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/67 (92%), Positives = 66/67 (99%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQG+GFRTLEENQ+VEFE+G SPKGPQ
Sbjct 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQRVEFEVGQSPKGPQ 60
Query 61 ATGVRSL 67
ATGVR++
Sbjct 61 ATGVRAV 67
>gi|54022330|ref|YP_116572.1| putative cold shock protein [Nocardia farcinica IFM 10152]
gi|54013838|dbj|BAD55208.1| putative cold shock protein [Nocardia farcinica IFM 10152]
Length=68
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/67 (89%), Positives = 63/67 (95%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAPEDGSADVFVHY+EIQG+GFRTLEENQKVEFE+G KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPEDGSADVFVHYSEIQGSGFRTLEENQKVEFEVGQGTKGPQ 60
Query 61 ATGVRSL 67
ATGVR+L
Sbjct 61 ATGVRAL 67
>gi|312138017|ref|YP_004005353.1| cold shock protein [Rhodococcus equi 103S]
gi|325675220|ref|ZP_08154905.1| cold shock protein A [Rhodococcus equi ATCC 33707]
gi|311887356|emb|CBH46667.1| cold shock protein [Rhodococcus equi 103S]
gi|325553926|gb|EGD23603.1| cold shock protein A [Rhodococcus equi ATCC 33707]
Length=67
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/67 (86%), Positives = 63/67 (95%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAPEDGSADVFVHY+EIQG+GFRTLEENQ+VEFE+G KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPEDGSADVFVHYSEIQGSGFRTLEENQRVEFEVGQGTKGPQ 60
Query 61 ATGVRSL 67
ATGVR++
Sbjct 61 ATGVRAI 67
>gi|111021327|ref|YP_704299.1| cold shock protein A [Rhodococcus jostii RHA1]
gi|226363671|ref|YP_002781453.1| cold shock protein [Rhodococcus opacus B4]
gi|110820857|gb|ABG96141.1| cold shock protein A [Rhodococcus jostii RHA1]
gi|226242160|dbj|BAH52508.1| cold shock protein [Rhodococcus opacus B4]
Length=67
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/67 (86%), Positives = 63/67 (95%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAPEDGSADVFVHY+EIQG+GFRTLEENQ+VEFE+G KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPEDGSADVFVHYSEIQGSGFRTLEENQRVEFEVGQGTKGPQ 60
Query 61 ATGVRSL 67
ATGVR++
Sbjct 61 ATGVRAV 67
>gi|226304000|ref|YP_002763958.1| cold shock protein [Rhodococcus erythropolis PR4]
gi|229494807|ref|ZP_04388563.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|226183115|dbj|BAH31219.1| probable cold shock protein [Rhodococcus erythropolis PR4]
gi|229318303|gb|EEN84168.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=67
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/67 (86%), Positives = 62/67 (93%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAPEDGSADVFVHY+EIQG GFRTLEENQ+VEFE+G KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPEDGSADVFVHYSEIQGNGFRTLEENQRVEFEVGQGTKGPQ 60
Query 61 ATGVRSL 67
ATGVR++
Sbjct 61 ATGVRAV 67
>gi|237786535|ref|YP_002907240.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
gi|237759447|gb|ACR18697.1| cold shock protein [Corynebacterium kroppenstedtii DSM 44385]
Length=67
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/67 (87%), Positives = 60/67 (90%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAPEDGS DVFVHYTEIQG+GFRTLEENQKVEFEIG KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPEDGSQDVFVHYTEIQGSGFRTLEENQKVEFEIGEGAKGPQ 60
Query 61 ATGVRSL 67
A VR+L
Sbjct 61 AQHVRAL 67
>gi|296141549|ref|YP_003648792.1| cold-shock DNA-binding domain-containing protein [Tsukamurella
paurometabola DSM 20162]
gi|296029683|gb|ADG80453.1| cold-shock DNA-binding domain protein [Tsukamurella paurometabola
DSM 20162]
Length=67
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/67 (84%), Positives = 60/67 (90%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAP DGS DVFVHY+EIQG GFRTLEENQ+VEFE+G KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPADGSDDVFVHYSEIQGNGFRTLEENQQVEFEVGQGTKGPQ 60
Query 61 ATGVRSL 67
ATGVR+L
Sbjct 61 ATGVRAL 67
>gi|38232941|ref|NP_938708.1| cold-shock protein [Corynebacterium diphtheriae NCTC 13129]
gi|38199199|emb|CAE48825.1| cold-shock protein [Corynebacterium diphtheriae]
Length=67
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/67 (84%), Positives = 60/67 (90%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAPEDGSADVFVHY+EIQG GFRTLEENQKVEFE+G KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPEDGSADVFVHYSEIQGNGFRTLEENQKVEFEVGEGAKGPQ 60
Query 61 ATGVRSL 67
A VR++
Sbjct 61 AQQVRAI 67
>gi|336326562|ref|YP_004606528.1| cold shock protein A [Corynebacterium resistens DSM 45100]
gi|336102544|gb|AEI10364.1| cold shock protein A [Corynebacterium resistens DSM 45100]
Length=67
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/67 (86%), Positives = 59/67 (89%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAPEDGSADVFVHY+EIQG GFRTLEENQKVEFEIG KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPEDGSADVFVHYSEIQGNGFRTLEENQKVEFEIGEGAKGPQ 60
Query 61 ATGVRSL 67
A V +L
Sbjct 61 AQNVTAL 67
>gi|296118095|ref|ZP_06836677.1| putative cold shock protein [Corynebacterium ammoniagenes DSM
20306]
gi|295968981|gb|EFG82224.1| putative cold shock protein [Corynebacterium ammoniagenes DSM
20306]
Length=67
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/67 (84%), Positives = 59/67 (89%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAPEDGSADVFVHY+EIQG GFRTLEENQ+V FEIG KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPEDGSADVFVHYSEIQGNGFRTLEENQQVSFEIGEGQKGPQ 60
Query 61 ATGVRSL 67
AT V +L
Sbjct 61 ATNVNAL 67
>gi|262200587|ref|YP_003271795.1| cold-shock protein DNA-binding protein [Gordonia bronchialis
DSM 43247]
gi|262083934|gb|ACY19902.1| Cold-shock protein DNA-binding protein [Gordonia bronchialis
DSM 43247]
Length=67
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/67 (81%), Positives = 62/67 (93%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAP++GS DVFVHY+EIQG+GFRTLEENQ+VEFE+G KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPDEGSDDVFVHYSEIQGSGFRTLEENQRVEFEVGQGTKGPQ 60
Query 61 ATGVRSL 67
ATGVR++
Sbjct 61 ATGVRAV 67
>gi|343926494|ref|ZP_08765999.1| putative cold shock protein [Gordonia alkanivorans NBRC 16433]
gi|343763732|dbj|GAA12925.1| putative cold shock protein [Gordonia alkanivorans NBRC 16433]
Length=67
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/67 (81%), Positives = 61/67 (92%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAP++GS DVFVHY+EIQG GFRTLEENQ+VEFE+G KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPDEGSDDVFVHYSEIQGAGFRTLEENQRVEFEVGQGTKGPQ 60
Query 61 ATGVRSL 67
ATGVR++
Sbjct 61 ATGVRAV 67
>gi|333920303|ref|YP_004493884.1| putative cold shock protein A [Amycolicicoccus subflavus DQS3-9A1]
gi|333482524|gb|AEF41084.1| putative cold shock protein A [Amycolicicoccus subflavus DQS3-9A1]
Length=67
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/67 (81%), Positives = 60/67 (90%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFN+EKGFGFIAPEDGSADVFVHY+EIQ +GFR+LEENQ+VEFEIG SPKG Q
Sbjct 1 MAQGTVKWFNSEKGFGFIAPEDGSADVFVHYSEIQSSGFRSLEENQRVEFEIGQSPKGQQ 60
Query 61 ATGVRSL 67
A VR +
Sbjct 61 AIAVRPI 67
>gi|300857641|ref|YP_003782624.1| cold shock-like protein A [Corynebacterium pseudotuberculosis
FRC41]
gi|337289885|ref|YP_004628906.1| cold shock-like protein A [Corynebacterium ulcerans BR-AD22]
gi|300685095|gb|ADK28017.1| cold shock-like protein A [Corynebacterium pseudotuberculosis
FRC41]
6 more sequence titles
Length=67
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/67 (84%), Positives = 59/67 (89%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAP+DGSADVFVHY+EIQG GFRTLEENQKVEFEIG KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPDDGSADVFVHYSEIQGNGFRTLEENQKVEFEIGEGAKGPQ 60
Query 61 ATGVRSL 67
A V +L
Sbjct 61 AQQVHAL 67
>gi|326383466|ref|ZP_08205153.1| cold shock protein [Gordonia neofelifaecis NRRL B-59395]
gi|326197872|gb|EGD55059.1| cold shock protein [Gordonia neofelifaecis NRRL B-59395]
Length=67
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/67 (81%), Positives = 60/67 (90%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAP+DG ADVFVHY+EIQG GFRTLEE+Q+VEFE+G KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPDDGDADVFVHYSEIQGNGFRTLEEDQRVEFEVGQGTKGPQ 60
Query 61 ATGVRSL 67
ATGV +L
Sbjct 61 ATGVHAL 67
>gi|68537049|ref|YP_251754.1| putative cold shock protein [Corynebacterium jeikeium K411]
gi|260579394|ref|ZP_05847276.1| cold shock protein [Corynebacterium jeikeium ATCC 43734]
gi|68264648|emb|CAI38136.1| putative cold shock protein [Corynebacterium jeikeium K411]
gi|258602523|gb|EEW15818.1| cold shock protein [Corynebacterium jeikeium ATCC 43734]
Length=67
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/67 (83%), Positives = 60/67 (90%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAP+DGS+DVFVHY+EIQG+GFRTLEENQKVEFEIG KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPDDGSSDVFVHYSEIQGSGFRTLEENQKVEFEIGEGAKGPQ 60
Query 61 ATGVRSL 67
A V +L
Sbjct 61 AQNVTAL 67
>gi|302529053|ref|ZP_07281395.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
gi|302437948|gb|EFL09764.1| cold shock domain-containing protein CspD [Streptomyces sp. AA4]
Length=67
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/67 (78%), Positives = 61/67 (92%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFI+P+DGSADVFVHY+EIQG GFR+L+EN +VEFE+G KGPQ
Sbjct 1 MTQGTVKWFNAEKGFGFISPDDGSADVFVHYSEIQGNGFRSLDENARVEFEVGQGQKGPQ 60
Query 61 ATGVRSL 67
ATGVR++
Sbjct 61 ATGVRAI 67
>gi|259505713|ref|ZP_05748615.1| cold shock protein [Corynebacterium efficiens YS-314]
gi|259166686|gb|EEW51240.1| cold shock protein [Corynebacterium efficiens YS-314]
Length=67
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/67 (81%), Positives = 58/67 (87%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAP DGSADVFVHY+EIQG GFR LEENQ+VEFE+G KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPSDGSADVFVHYSEIQGNGFRNLEENQQVEFELGEGAKGPQ 60
Query 61 ATGVRSL 67
A VR+L
Sbjct 61 AQQVRAL 67
>gi|334563527|ref|ZP_08516518.1| putative cold shock protein [Corynebacterium bovis DSM 20582]
Length=67
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/67 (81%), Positives = 59/67 (89%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAP+DGS DVFVHY+EIQG+GFRTLEENQKVEFE+G KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFIAPDDGSDDVFVHYSEIQGSGFRTLEENQKVEFEVGEGAKGPQ 60
Query 61 ATGVRSL 67
A V +L
Sbjct 61 AQNVTAL 67
>gi|300779976|ref|ZP_07089832.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030]
gi|300534086|gb|EFK55145.1| cold shock protein CspA [Corynebacterium genitalium ATCC 33030]
Length=67
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/67 (81%), Positives = 60/67 (90%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M GTVKWFNAEKGFGFIAP+DGS+DVFVHY+EIQG+GFRTLEENQ+VEFEIG KGPQ
Sbjct 1 MATGTVKWFNAEKGFGFIAPDDGSSDVFVHYSEIQGSGFRTLEENQQVEFEIGEGSKGPQ 60
Query 61 ATGVRSL 67
A VR+L
Sbjct 61 AQQVRAL 67
>gi|227549696|ref|ZP_03979745.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291]
gi|227078192|gb|EEI16155.1| cold-shock protein [Corynebacterium lipophiloflavum DSM 44291]
Length=67
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/67 (83%), Positives = 58/67 (87%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M GTVKWFNAEKGFGFIAP+DGSADVFVHY+EIQG GFRTLEENQ+VEFEIG KGPQ
Sbjct 1 MATGTVKWFNAEKGFGFIAPDDGSADVFVHYSEIQGNGFRTLEENQQVEFEIGDGAKGPQ 60
Query 61 ATGVRSL 67
A VR L
Sbjct 61 AQAVRPL 67
>gi|25029285|ref|NP_739339.1| hypothetical protein CE2729 [Corynebacterium efficiens YS-314]
gi|23494573|dbj|BAC19539.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=251
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/67 (81%), Positives = 58/67 (87%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFIAP DGSADVFVHY+EIQG GFR LEENQ+VEFE+G KGPQ
Sbjct 185 MAQGTVKWFNAEKGFGFIAPSDGSADVFVHYSEIQGNGFRNLEENQQVEFELGEGAKGPQ 244
Query 61 ATGVRSL 67
A VR+L
Sbjct 245 AQQVRAL 251
>gi|254818580|ref|ZP_05223581.1| cold-shock DNA-binding protein family protein [Mycobacterium
intracellulare ATCC 13950]
Length=67
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/67 (77%), Positives = 60/67 (90%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFN EKGFGFIAP+DGSADVFVHY+EIQG G+R+LEENQ+V+FE+G KGPQ
Sbjct 1 MTQGTVKWFNGEKGFGFIAPDDGSADVFVHYSEIQGGGYRSLEENQRVQFEVGQGAKGPQ 60
Query 61 ATGVRSL 67
ATGV ++
Sbjct 61 ATGVTAV 67
>gi|319948998|ref|ZP_08023098.1| cold-shock protein [Dietzia cinnamea P4]
gi|319437339|gb|EFV92359.1| cold-shock protein [Dietzia cinnamea P4]
Length=67
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/67 (77%), Positives = 60/67 (90%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKG+GFIAPEDGSAD+FVHY+ I+GTGF++LEENQ+VEFE+G KGPQ
Sbjct 1 MAQGTVKWFNAEKGYGFIAPEDGSADLFVHYSSIEGTGFKSLEENQRVEFEVGEGQKGPQ 60
Query 61 ATGVRSL 67
A VR+L
Sbjct 61 AQEVRAL 67
>gi|172041529|ref|YP_001801243.1| putative cold shock protein [Corynebacterium urealyticum DSM
7109]
gi|171852833|emb|CAQ05809.1| putative cold shock protein [Corynebacterium urealyticum DSM
7109]
Length=67
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/67 (78%), Positives = 59/67 (89%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKG+GFIAPEDGSAD+FVHY+EIQ +GFRTLEE+QKVEFE+G KGPQ
Sbjct 1 MAQGTVKWFNAEKGYGFIAPEDGSADLFVHYSEIQSSGFRTLEEDQKVEFEVGEGAKGPQ 60
Query 61 ATGVRSL 67
A V+ L
Sbjct 61 AQNVQPL 67
>gi|340795411|ref|YP_004760874.1| cold shock-like protein A [Corynebacterium variabile DSM 44702]
gi|340535321|gb|AEK37801.1| cold shock-like protein A [Corynebacterium variabile DSM 44702]
Length=100
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/67 (80%), Positives = 57/67 (86%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKG+GFIAP DG ADVFVHY+EIQG GFRTLEENQ+VEFEIG KGPQ
Sbjct 34 MAQGTVKWFNAEKGYGFIAPNDGGADVFVHYSEIQGNGFRTLEENQQVEFEIGEGAKGPQ 93
Query 61 ATGVRSL 67
A V +L
Sbjct 94 AQQVTAL 100
>gi|19551424|ref|NP_599426.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
gi|62389068|ref|YP_224470.1| cold-shock protein CspA [Corynebacterium glutamicum ATCC 13032]
gi|21322938|dbj|BAB97567.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032]
gi|41324401|emb|CAF18741.1| COLD-SHOCK PROTEIN CSPA [Corynebacterium glutamicum ATCC 13032]
Length=67
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/67 (78%), Positives = 57/67 (86%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFN EKGFGFIAP DGSAD+FVHY+EIQG+GFR LEENQ VEFE+G KGPQ
Sbjct 1 MAQGTVKWFNGEKGFGFIAPNDGSADLFVHYSEIQGSGFRNLEENQPVEFEVGEGAKGPQ 60
Query 61 ATGVRSL 67
A VR+L
Sbjct 61 AQQVRAL 67
>gi|145294296|ref|YP_001137117.1| hypothetical protein cgR_0252 [Corynebacterium glutamicum R]
gi|140844216|dbj|BAF53215.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044191|gb|EGV39871.1| hypothetical protein CgS9114_10502 [Corynebacterium glutamicum
S9114]
Length=67
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/67 (77%), Positives = 57/67 (86%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFN EKGFGFIAP DGSAD+FVHY+EIQG+GFR LEENQ VEFE+G KGPQ
Sbjct 1 MAQGTVKWFNGEKGFGFIAPNDGSADLFVHYSEIQGSGFRNLEENQLVEFEVGEGAKGPQ 60
Query 61 ATGVRSL 67
A VR++
Sbjct 61 AQQVRAI 67
>gi|226365143|ref|YP_002782926.1| cold shock protein [Rhodococcus opacus B4]
gi|226243633|dbj|BAH53981.1| cold shock protein [Rhodococcus opacus B4]
Length=67
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/67 (78%), Positives = 57/67 (86%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M +G VKWFN+EKGFGFIAPEDGSADVFVHY+EIQ GFRTLEENQ+V FEIG KGPQ
Sbjct 1 MAEGIVKWFNSEKGFGFIAPEDGSADVFVHYSEIQSGGFRTLEENQRVSFEIGQGNKGPQ 60
Query 61 ATGVRSL 67
ATGV +
Sbjct 61 ATGVSVI 67
>gi|145294439|ref|YP_001137260.1| hypothetical protein cgR_0394 [Corynebacterium glutamicum R]
gi|140844359|dbj|BAF53358.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045230|gb|EGV40903.1| hypothetical protein CgS9114_06072 [Corynebacterium glutamicum
S9114]
Length=67
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/67 (80%), Positives = 56/67 (84%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFN EKGFGFIAP DGSADVFVHY+EIQG GFRTLEENQ VEFEIG KG Q
Sbjct 1 MAQGTVKWFNPEKGFGFIAPSDGSADVFVHYSEIQGNGFRTLEENQLVEFEIGEGAKGLQ 60
Query 61 ATGVRSL 67
A VR++
Sbjct 61 AQAVRAI 67
>gi|111022638|ref|YP_705610.1| cold shock protein [Rhodococcus jostii RHA1]
gi|110822168|gb|ABG97452.1| cold shock protein [Rhodococcus jostii RHA1]
Length=67
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/64 (82%), Positives = 56/64 (88%), Gaps = 0/64 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M +G VKWFN+EKGFGFIAPEDGSADVFVHY+EIQ GFRTLEENQ+V FEIG KGPQ
Sbjct 1 MAEGIVKWFNSEKGFGFIAPEDGSADVFVHYSEIQSGGFRTLEENQRVSFEIGQGNKGPQ 60
Query 61 ATGV 64
ATGV
Sbjct 61 ATGV 64
>gi|111021610|ref|YP_704582.1| cold shock protein [Rhodococcus jostii RHA1]
gi|226364145|ref|YP_002781927.1| cold shock protein [Rhodococcus opacus B4]
gi|110821140|gb|ABG96424.1| cold shock protein [Rhodococcus jostii RHA1]
gi|226242634|dbj|BAH52982.1| cold shock protein [Rhodococcus opacus B4]
Length=67
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/67 (72%), Positives = 59/67 (89%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QG VKWFN+EKGFGFIAP+DGSADVFVHY+EI G+G+++LEENQ+VEFE+G KGPQ
Sbjct 1 MAQGVVKWFNSEKGFGFIAPDDGSADVFVHYSEISGSGYKSLEENQRVEFEVGQGQKGPQ 60
Query 61 ATGVRSL 67
A VR++
Sbjct 61 AQNVRAV 67
>gi|226307843|ref|YP_002767803.1| cold shock protein [Rhodococcus erythropolis PR4]
gi|229494927|ref|ZP_04388678.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|226186960|dbj|BAH35064.1| probable cold shock protein [Rhodococcus erythropolis PR4]
gi|229318151|gb|EEN84021.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=67
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/64 (82%), Positives = 56/64 (88%), Gaps = 0/64 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M +G VKWFN+EKGFGFIAPEDGSADVFVHY+EIQ GFRTLEENQ+V FEIG KGPQ
Sbjct 1 MAEGIVKWFNSEKGFGFIAPEDGSADVFVHYSEIQSGGFRTLEENQRVAFEIGQGNKGPQ 60
Query 61 ATGV 64
ATGV
Sbjct 61 ATGV 64
>gi|312138659|ref|YP_004005995.1| cold shock protein [Rhodococcus equi 103S]
gi|325676272|ref|ZP_08155951.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
gi|311887998|emb|CBH47310.1| cold shock protein [Rhodococcus equi 103S]
gi|325552833|gb|EGD22516.1| cold shock protein CspA [Rhodococcus equi ATCC 33707]
Length=67
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/67 (77%), Positives = 57/67 (86%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M +GTVKWFNAEKGFGFIAP+DGSADVFVHY+ IQ GFRTLEENQ+V FEIG KGPQ
Sbjct 1 MAEGTVKWFNAEKGFGFIAPDDGSADVFVHYSAIQTNGFRTLEENQRVRFEIGQGNKGPQ 60
Query 61 ATGVRSL 67
AT V ++
Sbjct 61 ATDVTAV 67
>gi|19551558|ref|NP_599560.1| cold shock protein [Corynebacterium glutamicum ATCC 13032]
gi|62389205|ref|YP_224607.1| cold-shock protein CspA [Corynebacterium glutamicum ATCC 13032]
gi|21323072|dbj|BAB97701.1| Cold shock proteins [Corynebacterium glutamicum ATCC 13032]
gi|41324538|emb|CAF18878.1| COLD-SHOCK PROTEIN CSPA [Corynebacterium glutamicum ATCC 13032]
Length=67
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/67 (78%), Positives = 56/67 (84%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFN EKGFGFIAP DGSADVFVHY+EI+G GFRTLEENQ VEFEIG KG Q
Sbjct 1 MAQGTVKWFNPEKGFGFIAPSDGSADVFVHYSEIEGNGFRTLEENQLVEFEIGEGAKGLQ 60
Query 61 ATGVRSL 67
A VR++
Sbjct 61 AQAVRAI 67
>gi|108799262|ref|YP_639459.1| cold-shock DNA-binding family protein [Mycobacterium sp. MCS]
gi|119868378|ref|YP_938330.1| cold-shock DNA-binding family protein [Mycobacterium sp. KMS]
gi|126434920|ref|YP_001070611.1| cold-shock DNA-binding family protein [Mycobacterium sp. JLS]
gi|108769681|gb|ABG08403.1| cold-shock DNA-binding protein family [Mycobacterium sp. MCS]
gi|119694467|gb|ABL91540.1| cold-shock DNA-binding protein family [Mycobacterium sp. KMS]
gi|126234720|gb|ABN98120.1| cold-shock DNA-binding protein family [Mycobacterium sp. JLS]
Length=67
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/67 (77%), Positives = 58/67 (87%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFN+EKGFGFIAP+ GS DVFVHY+EIQG GFR+LEENQ+VEFEIG KGPQ
Sbjct 1 MTQGTVKWFNSEKGFGFIAPDGGSDDVFVHYSEIQGGGFRSLEENQRVEFEIGQGAKGPQ 60
Query 61 ATGVRSL 67
AT V ++
Sbjct 61 ATSVTAI 67
>gi|213966043|ref|ZP_03394232.1| conserved domain protein [Corynebacterium amycolatum SK46]
gi|213951338|gb|EEB62731.1| conserved domain protein [Corynebacterium amycolatum SK46]
Length=67
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/67 (78%), Positives = 56/67 (84%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFN+EKGFGFIAP DG DVFVHY+EIQGTGF+TLEENQ VEFEIG KGPQ
Sbjct 1 MAQGTVKWFNSEKGFGFIAPADGGNDVFVHYSEIQGTGFKTLEENQAVEFEIGEGQKGPQ 60
Query 61 ATGVRSL 67
A V+ L
Sbjct 61 ALDVKPL 67
>gi|25026862|ref|NP_736916.1| putative cold shock protein [Corynebacterium efficiens YS-314]
gi|259506076|ref|ZP_05748978.1| cold shock protein [Corynebacterium efficiens YS-314]
gi|23492142|dbj|BAC17116.1| putative cold shock protein [Corynebacterium efficiens YS-314]
gi|259166364|gb|EEW50918.1| cold shock protein [Corynebacterium efficiens YS-314]
Length=67
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/67 (78%), Positives = 56/67 (84%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFN EKGFGFIAP DGSADVFVHY+EI+G GFRTLEENQ VEFEIG KG Q
Sbjct 1 MAQGTVKWFNPEKGFGFIAPSDGSADVFVHYSEIEGNGFRTLEENQLVEFEIGEGAKGLQ 60
Query 61 ATGVRSL 67
A VR++
Sbjct 61 AQSVRAV 67
>gi|184200633|ref|YP_001854840.1| cold shock protein [Kocuria rhizophila DC2201]
gi|183580863|dbj|BAG29334.1| cold shock protein [Kocuria rhizophila DC2201]
Length=67
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/67 (77%), Positives = 55/67 (83%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QGTVKWFNAEKGFGFI P+D DVFVHY+EIQ GFRTLEENQ+VEFEIG KGPQ
Sbjct 1 MAQGTVKWFNAEKGFGFITPDDADGDVFVHYSEIQSGGFRTLEENQRVEFEIGQGQKGPQ 60
Query 61 ATGVRSL 67
ATGV +
Sbjct 61 ATGVTVI 67
>gi|312138714|ref|YP_004006050.1| cold shock protein [Rhodococcus equi 103S]
gi|311888053|emb|CBH47365.1| cold shock protein [Rhodococcus equi 103S]
Length=67
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/67 (71%), Positives = 57/67 (86%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M GTVKWFNAEKGFGFIAPEDGSADVF HY+EIQG GFR+L+ENQ+V +++G KGPQ
Sbjct 1 MANGTVKWFNAEKGFGFIAPEDGSADVFAHYSEIQGGGFRSLDENQRVSYDLGQGAKGPQ 60
Query 61 ATGVRSL 67
AT + ++
Sbjct 61 ATNITAI 67
>gi|269793596|ref|YP_003313051.1| cold-shock DNA-binding protein family [Sanguibacter keddieii
DSM 10542]
gi|269095781|gb|ACZ20217.1| cold-shock DNA-binding protein family [Sanguibacter keddieii
DSM 10542]
Length=67
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/67 (74%), Positives = 56/67 (84%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M GTVKWFNAEKGFGFIAPEDGSADVF HY+ IQ +G+R+L+ENQKVEF+I PKGPQ
Sbjct 1 MAVGTVKWFNAEKGFGFIAPEDGSADVFAHYSAIQSSGYRSLDENQKVEFDITQGPKGPQ 60
Query 61 ATGVRSL 67
A +R L
Sbjct 61 AENIRPL 67
>gi|111017609|ref|YP_700581.1| cold shock protein [Rhodococcus jostii RHA1]
gi|111025401|ref|YP_707821.1| CspA family cold-shock protein [Rhodococcus jostii RHA1]
gi|110817139|gb|ABG92423.1| cold shock protein [Rhodococcus jostii RHA1]
gi|110824380|gb|ABG99663.1| cold-shock protein, CspA family protein [Rhodococcus jostii RHA1]
Length=67
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/67 (72%), Positives = 58/67 (87%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M QG VKWFN EKGFGFIAP+DG+ DVFVHY+EI G+GF++L+ENQ+VEFE+G KGPQ
Sbjct 1 MAQGIVKWFNGEKGFGFIAPDDGTPDVFVHYSEISGSGFKSLDENQRVEFEVGQGQKGPQ 60
Query 61 ATGVRSL 67
AT VRS+
Sbjct 61 ATNVRSV 67
>gi|325676595|ref|ZP_08156273.1| cold shock transcription regulator protein [Rhodococcus equi
ATCC 33707]
gi|325552773|gb|EGD22457.1| cold shock transcription regulator protein [Rhodococcus equi
ATCC 33707]
Length=98
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/67 (71%), Positives = 57/67 (86%), Gaps = 0/67 (0%)
Query 1 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEIGHSPKGPQ 60
M GTVKWFNAEKGFGFIAPEDGSADVF HY+EIQG GFR+L+ENQ+V +++G KGPQ
Sbjct 32 MANGTVKWFNAEKGFGFIAPEDGSADVFAHYSEIQGGGFRSLDENQRVSYDLGQGAKGPQ 91
Query 61 ATGVRSL 67
AT + ++
Sbjct 92 ATNITAI 98
Lambda K H
0.316 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129524807608
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40