BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3649 Length=771 Score E Sequences producing significant alignments: (Bits) Value gi|15610785|ref|NP_218166.1| helicase [Mycobacterium tuberculosi... 1530 0.0 gi|289763826|ref|ZP_06523204.1| DeaD/DeaH box family ATP-depende... 1528 0.0 gi|31794819|ref|NP_857312.1| putative helicase [Mycobacterium bo... 1527 0.0 gi|121639562|ref|YP_979786.1| putative helicase [Mycobacterium b... 1525 0.0 gi|15843261|ref|NP_338298.1| DEAD-box ATP dependent DNA helicase... 1525 0.0 gi|340628621|ref|YP_004747073.1| putative helicase [Mycobacteriu... 1521 0.0 gi|342862013|ref|ZP_08718657.1| ATP-dependent rna helicase, dead... 1299 0.0 gi|296166705|ref|ZP_06849130.1| DEAD/DEAH box family ATP-depende... 1295 0.0 gi|183985109|ref|YP_001853400.1| DEAD/DEAH box helicase [Mycobac... 1289 0.0 gi|240173034|ref|ZP_04751692.1| DEAD/DEAH box helicase [Mycobact... 1284 0.0 gi|254821832|ref|ZP_05226833.1| ATP-dependent rna helicase, dead... 1275 0.0 gi|254773484|ref|ZP_05215000.1| ATP-dependent rna helicase, dead... 1257 0.0 gi|118465087|ref|YP_879796.1| ATP-dependent rna helicase, dead/d... 1256 0.0 gi|41406520|ref|NP_959356.1| hypothetical protein MAP0422c [Myco... 1252 0.0 gi|118468463|ref|YP_890380.1| ATP-dependent rna helicase, dead/d... 1178 0.0 gi|145221983|ref|YP_001132661.1| DEAD/DEAH box helicase domain-c... 1159 0.0 gi|315446277|ref|YP_004079156.1| helicase family protein with me... 1159 0.0 gi|126437749|ref|YP_001073440.1| DEAD/DEAH box helicase domain-c... 1139 0.0 gi|108801762|ref|YP_641959.1| DEAD/DEAH box helicase-like protei... 1138 0.0 gi|333992574|ref|YP_004525188.1| DEAD/DEAH box helicase [Mycobac... 1129 0.0 gi|120406347|ref|YP_956176.1| DEAD/DEAH box helicase domain-cont... 1129 0.0 gi|169627590|ref|YP_001701239.1| DEAD-box ATP dependent DNA heli... 1060 0.0 gi|325675221|ref|ZP_08154906.1| DEAD/DEAH box family ATP-depende... 972 0.0 gi|312138016|ref|YP_004005352.1| dead/deah box helicase [Rhodoco... 971 0.0 gi|229494797|ref|ZP_04388553.1| conserved hypothetical protein [... 951 0.0 gi|111021326|ref|YP_704298.1| helicase [Rhodococcus jostii RHA1]... 951 0.0 gi|226303999|ref|YP_002763957.1| ATP-dependent helicase [Rhodoco... 947 0.0 gi|226363670|ref|YP_002781452.1| helicase [Rhodococcus opacus B4... 930 0.0 gi|343926493|ref|ZP_08765998.1| putative ATP-dependent helicase ... 923 0.0 gi|296141550|ref|YP_003648793.1| hypothetical protein Tpau_3881 ... 919 0.0 gi|262200586|ref|YP_003271794.1| DEAD/DEAH box helicase [Gordoni... 917 0.0 gi|326383467|ref|ZP_08205154.1| DEAD/DEAH box helicase domain-co... 914 0.0 gi|54022329|ref|YP_116571.1| putative ATP-dependent RNA helicase... 898 0.0 gi|319948999|ref|ZP_08023099.1| hypothetical protein ES5_06352 [... 870 0.0 gi|331694284|ref|YP_004330523.1| helicase/secretion neighborhood... 846 0.0 gi|325002267|ref|ZP_08123379.1| helicase family protein with met... 837 0.0 gi|333917963|ref|YP_004491544.1| putative ATP-dependent helicase... 832 0.0 gi|257057534|ref|YP_003135366.1| helicase family protein with me... 826 0.0 gi|134096986|ref|YP_001102647.1| DEAD/DEAH box helicase-like [Sa... 818 0.0 gi|256374438|ref|YP_003098098.1| DEAD/DEAH box helicase domain-c... 815 0.0 gi|344045229|gb|EGV40902.1| DEAD/DEAH box helicase [Corynebacter... 811 0.0 gi|289571886|ref|ZP_06452113.1| conserved hypothetical protein [... 809 0.0 gi|62389204|ref|YP_224606.1| DEAD/DEAH box helicase [Corynebacte... 807 0.0 gi|145294438|ref|YP_001137259.1| hypothetical protein cgR_0393 [... 807 0.0 gi|259506077|ref|ZP_05748979.1| DEAD/DEAH box family ATP-depende... 806 0.0 gi|19551557|ref|NP_599559.1| helicase [Corynebacterium glutamicu... 806 0.0 gi|237786537|ref|YP_002907242.1| putative helicase [Corynebacter... 806 0.0 gi|25026861|ref|NP_736915.1| hypothetical protein CE0305 [Coryne... 805 0.0 gi|38232940|ref|NP_938707.1| ATP-dependent RNA helicase [Coryneb... 785 0.0 gi|213966014|ref|ZP_03394203.1| dead/deah box helicase [Coryneba... 784 0.0 >gi|15610785|ref|NP_218166.1| helicase [Mycobacterium tuberculosis H37Rv] gi|148663512|ref|YP_001285035.1| DeaD/DeaH box family ATP-dependent RNA helicase [Mycobacterium tuberculosis H37Ra] gi|148824851|ref|YP_001289605.1| helicase [Mycobacterium tuberculosis F11] 42 more sequence titles Length=771 Score = 1530 bits (3961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 771/771 (100%), Positives = 771/771 (100%), Gaps = 0/771 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW Sbjct 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL Sbjct 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV Sbjct 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD Sbjct 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 Query 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA Sbjct 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 Query 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG Sbjct 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 Query 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL Sbjct 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 Query 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL Sbjct 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 Query 481 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL Sbjct 481 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 Query 541 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV Sbjct 541 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 Query 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA Sbjct 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 Query 661 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA Sbjct 661 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 Query 721 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP Sbjct 721 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 >gi|289763826|ref|ZP_06523204.1| DeaD/DeaH box family ATP-dependent RNA helicase [Mycobacterium tuberculosis GM 1503] gi|289711332|gb|EFD75348.1| DeaD/DeaH box family ATP-dependent RNA helicase [Mycobacterium tuberculosis GM 1503] Length=771 Score = 1528 bits (3957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 770/771 (99%), Positives = 771/771 (100%), Gaps = 0/771 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW Sbjct 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL Sbjct 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV Sbjct 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD Sbjct 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 Query 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA Sbjct 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 Query 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG Sbjct 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 Query 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL Sbjct 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 Query 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL Sbjct 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 Query 481 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL Sbjct 481 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 Query 541 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 HQGETYVVDSLDFQDGI+FVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV Sbjct 541 HQGETYVVDSLDFQDGISFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 Query 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA Sbjct 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 Query 661 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA Sbjct 661 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 Query 721 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP Sbjct 721 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 >gi|31794819|ref|NP_857312.1| putative helicase [Mycobacterium bovis AF2122/97] gi|289445243|ref|ZP_06434987.1| helicase [Mycobacterium tuberculosis CPHL_A] gi|289572296|ref|ZP_06452523.1| helicase [Mycobacterium tuberculosis K85] 17 more sequence titles Length=771 Score = 1527 bits (3953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 770/771 (99%), Positives = 770/771 (99%), Gaps = 0/771 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW Sbjct 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQL VLNALATDSRARALYLSPTKALGHDQL Sbjct 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLPVLNALATDSRARALYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV Sbjct 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD Sbjct 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 Query 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA Sbjct 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 Query 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG Sbjct 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 Query 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL Sbjct 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 Query 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL Sbjct 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 Query 481 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL Sbjct 481 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 Query 541 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV Sbjct 541 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 Query 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA Sbjct 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 Query 661 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA Sbjct 661 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 Query 721 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP Sbjct 721 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 >gi|121639562|ref|YP_979786.1| putative helicase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224992059|ref|YP_002646748.1| putative helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|121495210|emb|CAL73696.1| Putative helicase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224775174|dbj|BAH27980.1| putative helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|341603583|emb|CCC66264.1| putative helicase [Mycobacterium bovis BCG str. Moreau RDJ] Length=771 Score = 1525 bits (3948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 769/771 (99%), Positives = 769/771 (99%), Gaps = 0/771 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW Sbjct 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQL VLNALATDSRARALYLSPTKALGHDQL Sbjct 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLPVLNALATDSRARALYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV Sbjct 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD Sbjct 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 Query 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA Sbjct 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 Query 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG Sbjct 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 Query 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL Sbjct 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 Query 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL Sbjct 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 Query 481 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL Sbjct 481 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 Query 541 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV Sbjct 541 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 Query 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA Sbjct 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 Query 661 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 EHAAIGLLPLVASCDR DIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA Sbjct 661 EHAAIGLLPLVASCDRDDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 Query 721 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP Sbjct 721 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 >gi|15843261|ref|NP_338298.1| DEAD-box ATP dependent DNA helicase [Mycobacterium tuberculosis CDC1551] gi|13883618|gb|AAK48112.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mycobacterium tuberculosis CDC1551] Length=771 Score = 1525 bits (3948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 769/771 (99%), Positives = 769/771 (99%), Gaps = 0/771 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW Sbjct 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKAL HD L Sbjct 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALVHDXL 120 Query 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV Sbjct 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD Sbjct 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 Query 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA Sbjct 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 Query 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG Sbjct 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 Query 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL Sbjct 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 Query 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL Sbjct 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 Query 481 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL Sbjct 481 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 Query 541 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV Sbjct 541 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 Query 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA Sbjct 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 Query 661 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA Sbjct 661 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 Query 721 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP Sbjct 721 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 >gi|340628621|ref|YP_004747073.1| putative helicase [Mycobacterium canettii CIPT 140010059] gi|340006811|emb|CCC46000.1| putative helicase [Mycobacterium canettii CIPT 140010059] Length=771 Score = 1521 bits (3939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 766/771 (99%), Positives = 770/771 (99%), Gaps = 0/771 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW Sbjct 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQL VLNALATDSRARALYLSPTKALGHDQL Sbjct 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLPVLNALATDSRARALYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNP+MTHLSVLRNHARWAV Sbjct 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPDMTHLSVLRNHARWAV 180 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD Sbjct 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 Query 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 LIGQPVVEVTEDGSPRGARTVALWEP+LRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA Sbjct 241 LIGQPVVEVTEDGSPRGARTVALWEPSLRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 Query 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEG+LRG Sbjct 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGRLRG 360 Query 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL Sbjct 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 Query 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL Sbjct 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 Query 481 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 LRRRNG+YFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL Sbjct 481 LRRRNGKYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 Query 541 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV Sbjct 541 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 Query 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA Sbjct 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 Query 661 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA Sbjct 661 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 Query 721 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP Sbjct 721 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 >gi|342862013|ref|ZP_08718657.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium colombiense CECT 3035] gi|342130553|gb|EGT83862.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium colombiense CECT 3035] Length=783 Score = 1299 bits (3362), Expect = 0.0, Method: Compositional matrix adjust. Identities = 660/773 (86%), Positives = 705/773 (92%), Gaps = 6/773 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 MASFGS LLAAA+AGT E PLRHVAELPP++GRP WP WAEPDVV AFADRGI SPW Sbjct 1 MASFGSELLAAALAGTASDEHPLRHVAELPPRSGRPHDWPAWAEPDVVSAFADRGIKSPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQ+ AA+LAYAGRHVV+ TG ASGKSLAYQL VLN LATD RAR LYLSPTKALGHDQL Sbjct 61 SHQSAAADLAYAGRHVVLSTGTASGKSLAYQLPVLNTLATDPRARVLYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 RAAHAL AA+P DVAPTAYDGDSP EVRRFARERSRW+FSNP+M HLS+LRNHARW V Sbjct 121 RAAHALTAAIPTCHDVAPTAYDGDSPTEVRRFARERSRWVFSNPDMIHLSILRNHARWTV 180 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSA----HPTVIFASATTASPGA 236 LLR+LRFVIVDECHYYRGVFGSNVAMVLRRL RLCARYSA PT IFASATT SPGA Sbjct 181 LLRSLRFVIVDECHYYRGVFGSNVAMVLRRLSRLCARYSARPDCQPTFIFASATTDSPGA 240 Query 237 TAADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLI 296 TA +L+GQPV EVTEDGSP+GARTVALWEPALRSD+ GE+GAPVRRSAGAEAARVMADLI Sbjct 241 TATELLGQPVAEVTEDGSPQGARTVALWEPALRSDLTGENGAPVRRSAGAEAARVMADLI 300 Query 297 VEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEG 356 EGAQTLTFVRSRRAAELTALGA+ARL DIAPELS VASYRAGYLAEDR+AL +ALAEG Sbjct 301 AEGAQTLTFVRSRRAAELTALGAQARLDDIAPELSGQVASYRAGYLAEDRTALERALAEG 360 Query 357 QLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL 416 +LRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVL+ARDDPL Sbjct 361 RLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLVARDDPL 420 Query 417 DTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLV 476 DTYLVH+PAALLDKPVERVVIDP NP++LGPQLLCAATELPLDDAEVR+ A EVA+ LV Sbjct 421 DTYLVHNPAALLDKPVERVVIDPANPYILGPQLLCAATELPLDDAEVRALEATEVADGLV 480 Query 477 DDGLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPG 536 DDGLLRRR G+YFP PG++PHAAVD+RG+ GGQIVIVEA TGRLLGS G GQAPA HPG Sbjct 481 DDGLLRRRGGKYFPVPGLEPHAAVDIRGSAGGQIVIVEADTGRLLGSAGAGQAPATVHPG 540 Query 537 AVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLV 596 AVYLHQG++YVVDSLD ++GIAFVHAEDPGYATFAREVTDIAVTGTGERL FGPV LGLV Sbjct 541 AVYLHQGDSYVVDSLDTEEGIAFVHAEDPGYATFAREVTDIAVTGTGERLAFGPVTLGLV 600 Query 597 PVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGS 656 PVTVT+ VVGYLRR+LSGEV+DF+EL+MPEHTL TTAVMYTIT DAL R G+EATRIPG+ Sbjct 601 PVTVTHQVVGYLRRRLSGEVIDFIELEMPEHTLATTAVMYTITEDALQRKGVEATRIPGA 660 Query 657 LHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE--GLPSVFVYDGYPGGAGFAERGFRRA 714 LHAAEHAAIGLLPLVASCDRGDIGG+STA GP+ GLPSVFVYDGYPGGAGFAERGFRRA Sbjct 661 LHAAEHAAIGLLPLVASCDRGDIGGLSTAVGPDPLGLPSVFVYDGYPGGAGFAERGFRRA 720 Query 715 RTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELS 767 R WLGATA AIEACECP GCPSCVQSPKCGNGNDPLDKAGAV VLRLVLAEL+ Sbjct 721 RIWLGATAAAIEACECPRGCPSCVQSPKCGNGNDPLDKAGAVLVLRLVLAELA 773 >gi|296166705|ref|ZP_06849130.1| DEAD/DEAH box family ATP-dependent RNA helicase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897970|gb|EFG77551.1| DEAD/DEAH box family ATP-dependent RNA helicase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=780 Score = 1295 bits (3351), Expect = 0.0, Method: Compositional matrix adjust. Identities = 658/772 (86%), Positives = 711/772 (93%), Gaps = 6/772 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 MASFGS LLAAA+AGT E PLRHVAELPP+ GRP+GWP WA+PDVV AF DRG+ SPW Sbjct 1 MASFGSDLLAAALAGTEADEHPLRHVAELPPRTGRPQGWPAWADPDVVRAFTDRGVGSPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQ+ AAELA+AGRHVV+ TG ASGKSLAYQL VL+ALATD RAR LYLSPTKALGHDQL Sbjct 61 SHQSAAAELAHAGRHVVVSTGTASGKSLAYQLPVLHALATDPRARVLYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLAD----VAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHA 176 RAAHAL AA+PRL D VAPTAYDGDSP EVRRFARERSRWLFSNP+M HLS+LRNHA Sbjct 121 RAAHALTAAIPRLHDPNFGVAPTAYDGDSPAEVRRFARERSRWLFSNPDMIHLSILRNHA 180 Query 177 RWAVLLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGA 236 RWAVLLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYS+ PTV+FASATT +PGA Sbjct 181 RWAVLLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSSAPTVVFASATTDAPGA 240 Query 237 TAADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLI 296 TAA+LIG PV EVTEDGSP+GART+ALWEPALR+D++GE+GAPVRRSAGAEAARVMADLI Sbjct 241 TAAELIGLPVEEVTEDGSPQGARTIALWEPALRADLLGENGAPVRRSAGAEAARVMADLI 300 Query 297 VEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEG 356 EGAQTLTFVRSRRAAELTALGA+ARL D+AP+L+ VASYRAGYLAEDR+AL +ALAEG Sbjct 301 AEGAQTLTFVRSRRAAELTALGAQARLDDVAPDLAGKVASYRAGYLAEDRTALERALAEG 360 Query 357 QLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL 416 +LRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL Sbjct 361 RLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL 420 Query 417 DTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLV 476 DTYLVHHPAALL KPVERVVIDP NP+LLGPQLLCAATE+PLD+AEVR +GA +VA LV Sbjct 421 DTYLVHHPAALLGKPVERVVIDPANPYLLGPQLLCAATEMPLDEAEVRDFGATDVAGGLV 480 Query 477 DDGLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPG 536 DDGLLRRRNG+YFPA G++PHAAVD+RG+ GGQ+VIVEA TGRLLGS GVGQAPA+ HPG Sbjct 481 DDGLLRRRNGKYFPAAGLEPHAAVDIRGSAGGQVVIVEADTGRLLGSTGVGQAPASIHPG 540 Query 537 AVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLV 596 AVYLHQGE+YVVDSL+ +D IAFVHAEDPGYATFARE+TDIAVTGTGER FGPV LGLV Sbjct 541 AVYLHQGESYVVDSLNLEDAIAFVHAEDPGYATFARELTDIAVTGTGERSQFGPVTLGLV 600 Query 597 PVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGS 656 PVTVT+ VVGYLRR+LSGEV+DF+ELDMPE TL TTAVMYTI DAL+R GI+A RIPGS Sbjct 601 PVTVTHRVVGYLRRRLSGEVIDFIELDMPEQTLATTAVMYTIAEDALLRKGIDAPRIPGS 660 Query 657 LHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE--GLPSVFVYDGYPGGAGFAERGFRRA 714 LHAAEHAAIGLLPLVASCDRGDIGG+STA GP+ GLPSVFVYDGYPGGAGFAERGFRRA Sbjct 661 LHAAEHAAIGLLPLVASCDRGDIGGLSTAVGPDPAGLPSVFVYDGYPGGAGFAERGFRRA 720 Query 715 RTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAEL 766 RTWLGATA AIEACECP GCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAEL Sbjct 721 RTWLGATAAAIEACECPRGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAEL 772 >gi|183985109|ref|YP_001853400.1| DEAD/DEAH box helicase [Mycobacterium marinum M] gi|183178435|gb|ACC43545.1| DEAD/DEAH box helicase [Mycobacterium marinum M] Length=771 Score = 1289 bits (3336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 647/769 (85%), Positives = 702/769 (92%), Gaps = 0/769 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 M SFG LLA A+AGTP GE PL HVAELPP+AG+P WP+WAEPDVV F RGI++PW Sbjct 1 MISFGRELLAVALAGTPTGEHPLHHVAELPPRAGQPSAWPQWAEPDVVRTFTQRGITAPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQ+ AAELA+ GRHVV+ TG ASGKSLAYQL VL ALA D RAR LYLSPTKALGHDQL Sbjct 61 SHQSTAAELAHDGRHVVVSTGTASGKSLAYQLPVLAALAADPRARVLYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 R A AL A V RL DVAPTAYDGDS DEVRRFARERSRWLFSNP+M HLS+LRNHARWAV Sbjct 121 RTAQALVANVERLRDVAPTAYDGDSSDEVRRFARERSRWLFSNPDMIHLSILRNHARWAV 180 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 LLRNLR++IVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATT SPGATAA+ Sbjct 181 LLRNLRYLIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTDSPGATAAE 240 Query 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 LIGQPV EVTEDGSP+GARTVALWEPALR+D+ GE+GAPVRRSAG EAARVMADLIVEGA Sbjct 241 LIGQPVAEVTEDGSPQGARTVALWEPALRTDLTGENGAPVRRSAGTEAARVMADLIVEGA 300 Query 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 QTLTFVRSRRAAELTALGA+ARL DIAP+LS TVASYRAGYL EDR+ L AL EG+LRG Sbjct 301 QTLTFVRSRRAAELTALGAQARLQDIAPQLSHTVASYRAGYLPEDRNCLEHALTEGRLRG 360 Query 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL Sbjct 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 Query 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 VHHPAALLDKPVERVVIDP NP+LLGPQLLCAATELPLD EV AVEV E+LVDDGL Sbjct 421 VHHPAALLDKPVERVVIDPGNPYLLGPQLLCAATELPLDAVEVHELRAVEVVEALVDDGL 480 Query 481 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 LRRR +YFPAPGV+PHAAVD+RG+IGGQ+VIVEA TGRLLG+VG QAPA+ HPGAVYL Sbjct 481 LRRRGDKYFPAPGVQPHAAVDIRGSIGGQVVIVEADTGRLLGNVGADQAPASVHPGAVYL 540 Query 541 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 HQGE+YVVDSLD ++G+AFVHA DPGYATFARE+TDIAVTG+GERL FGPV +GLVPVTV Sbjct 541 HQGESYVVDSLDTEEGLAFVHAADPGYATFARELTDIAVTGSGERLEFGPVTVGLVPVTV 600 Query 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 T+ VVGYLRR+LSGEV+DFVELDMPEH LPTTAVMYTIT++ L+R+G++A IPGSLHAA Sbjct 601 THQVVGYLRRRLSGEVIDFVELDMPEHVLPTTAVMYTITAEELLRNGVDAVAIPGSLHAA 660 Query 661 EHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 EHAAIGLLPLVASCDRGDIGG+STA GPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA Sbjct 661 EHAAIGLLPLVASCDRGDIGGISTAIGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGA 720 Query 721 TAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEE 769 TA AIEACECPSGCPSCVQSPKCGNGNDPLDKAGA++VLRLVL+++ ++ Sbjct 721 TASAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAMQVLRLVLSQVGDD 769 >gi|240173034|ref|ZP_04751692.1| DEAD/DEAH box helicase [Mycobacterium kansasii ATCC 12478] Length=774 Score = 1284 bits (3322), Expect = 0.0, Method: Compositional matrix adjust. Identities = 657/773 (85%), Positives = 700/773 (91%), Gaps = 5/773 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 M SFGS LLAAA+AGTP GE PLRHVAELPP+ GRP GWPEWA +VV AF +RGI+ PW Sbjct 1 MPSFGSELLAAALAGTPSGESPLRHVAELPPRPGRPTGWPEWAAANVVRAFVERGITVPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQ EAAELA+ GRHVV+ TG ASGKSLAYQL VLNALATD RAR LYLSPTKALGHDQL Sbjct 61 SHQLEAAELAHDGRHVVVSTGTASGKSLAYQLPVLNALATDPRARVLYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 RAAHAL AAVP L DVAPTAYDGDSP EVRRFARERSRWLFSNP+M HLS+LRNHARWAV Sbjct 121 RAAHALTAAVP-LDDVAPTAYDGDSPAEVRRFARERSRWLFSNPDMVHLSILRNHARWAV 179 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHP----TVIFASATTASPGA 236 LLR LRF++VDECHYYRGVFGSNVAMVLRRLLRLCARYSA P TVIFASATT SPGA Sbjct 180 LLRGLRFLVVDECHYYRGVFGSNVAMVLRRLLRLCARYSAEPGCGPTVIFASATTDSPGA 239 Query 237 TAADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLI 296 TAA+LIGQPV EV +DGSP+GARTVALWEPALR+D+ GE+GAPVRRSAGAEAARVMADLI Sbjct 240 TAAELIGQPVAEVVDDGSPQGARTVALWEPALRTDLTGENGAPVRRSAGAEAARVMADLI 299 Query 297 VEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEG 356 EGAQTLTFVRSRRAAELTALGARARL D+APELS VASYRAGYLAEDR+AL ALAEG Sbjct 300 AEGAQTLTFVRSRRAAELTALGARARLDDVAPELSGLVASYRAGYLAEDRTALEHALAEG 359 Query 357 QLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL 416 +LRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVL+ARDDPL Sbjct 360 RLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLVARDDPL 419 Query 417 DTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLV 476 DTYLVHHPAALL KPVERVVIDP NP+LLGPQLLCAA ELPLD AEVRS AV VA+ LV Sbjct 420 DTYLVHHPAALLGKPVERVVIDPGNPYLLGPQLLCAAVELPLDQAEVRSMDAVAVAQGLV 479 Query 477 DDGLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPG 536 DDGLLRRR +YFPAPGV+PHAAVD+RG+IGGQIVIVE+ TGRLLGSV G+AP HPG Sbjct 480 DDGLLRRRGDKYFPAPGVEPHAAVDIRGSIGGQIVIVESDTGRLLGSVDTGRAPTCVHPG 539 Query 537 AVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLV 596 AVYLHQGE+YVVDSLDF++GIAFVHAEDPGYATFARE+TDI V+G GER VFG V LGLV Sbjct 540 AVYLHQGESYVVDSLDFEEGIAFVHAEDPGYATFAREITDITVSGPGERSVFGAVTLGLV 599 Query 597 PVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGS 656 PVTVT+ V+GYLRR L+GEV+DFVELDMPE LPTTAVMYTIT DAL +GI+ RIPGS Sbjct 600 PVTVTHQVIGYLRRLLNGEVIDFVELDMPEQVLPTTAVMYTITPDALASNGIDTPRIPGS 659 Query 657 LHAAEHAAIGLLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRART 716 LHAAEHAAIGLLPL+ASCDRGDIGG+S+A GPEGLPSVFVYDGYPGGAGFAERGFRRART Sbjct 660 LHAAEHAAIGLLPLMASCDRGDIGGISSAIGPEGLPSVFVYDGYPGGAGFAERGFRRART 719 Query 717 WLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEE 769 WLGATA AIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAEL E Sbjct 720 WLGATAAAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELVAE 772 >gi|254821832|ref|ZP_05226833.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium intracellulare ATCC 13950] Length=777 Score = 1275 bits (3299), Expect = 0.0, Method: Compositional matrix adjust. Identities = 661/776 (86%), Positives = 712/776 (92%), Gaps = 6/776 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 MASFGS LLAAA+AGT ERPLRHVAELPP++GRP WP WAEPDVV AFADRGI++PW Sbjct 1 MASFGSELLAAALAGTATDERPLRHVAELPPRSGRPHDWPAWAEPDVVKAFADRGIAAPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQ AAELAYAGRHVV+ TG ASGKSLAYQL VLNALATD RAR LYLSPTKALGHDQL Sbjct 61 SHQFAAAELAYAGRHVVVSTGTASGKSLAYQLPVLNALATDPRARVLYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLAD----VAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHA 176 RAAHAL AA+PRL + VAPTAYDGDSP EVRRFARERSRWLFSNP+M HLS+LRNHA Sbjct 121 RAAHALTAAIPRLHEPGFAVAPTAYDGDSPAEVRRFARERSRWLFSNPDMIHLSILRNHA 180 Query 177 RWAVLLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGA 236 RWAVLLR LRFV+VDECHYYRGVFGSNVAMVLRRLLRLCARYS+ PTVIFASATT SP A Sbjct 181 RWAVLLRGLRFVVVDECHYYRGVFGSNVAMVLRRLLRLCARYSSAPTVIFASATTDSPSA 240 Query 237 TAADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLI 296 TA +LIG PV EVT+DGSP+GARTVALWEPALR+D++GE+GAPVRRSAGAEAARVMADLI Sbjct 241 TATELIGLPVQEVTKDGSPQGARTVALWEPALRTDLVGENGAPVRRSAGAEAARVMADLI 300 Query 297 VEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEG 356 EGAQTLTFVRSRRAAELTALGA+ARL DIAPELS TVASYRAGYLAEDR+AL +ALAEG Sbjct 301 AEGAQTLTFVRSRRAAELTALGAQARLDDIAPELSRTVASYRAGYLAEDRTALERALAEG 360 Query 357 QLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL 416 +LRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL Sbjct 361 RLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL 420 Query 417 DTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLV 476 DTYLVH+PAALLDKPVERVVIDP NP++LGPQLLCAATELPLD+ EVR GA +VA+ LV Sbjct 421 DTYLVHNPAALLDKPVERVVIDPTNPYILGPQLLCAATELPLDEPEVRELGATDVADGLV 480 Query 477 DDGLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPG 536 DDGLLRRR+G+YFPAPG++PHAAVD+RG+ GGQIVI+EA TGRLLGS VG+APA+ HPG Sbjct 481 DDGLLRRRSGKYFPAPGLEPHAAVDIRGSTGGQIVIIEADTGRLLGSTDVGRAPASVHPG 540 Query 537 AVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLV 596 AVYLHQGE+YVVDSLD ++GIAFVHAEDPGYATFARE+TDI VTGTGERL FGPV LGLV Sbjct 541 AVYLHQGESYVVDSLDTEEGIAFVHAEDPGYATFAREITDIVVTGTGERLAFGPVTLGLV 600 Query 597 PVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGS 656 PV VT+ VVGYLRR LSGEV+DF+ELDMPEHTL TT+VMYTIT DAL+R GI+ TRIPGS Sbjct 601 PVRVTHRVVGYLRRLLSGEVIDFIELDMPEHTLATTSVMYTITEDALLRKGIDGTRIPGS 660 Query 657 LHAAEHAAIGLLPLVASCDRGDIGGMSTAT--GPEGLPSVFVYDGYPGGAGFAERGFRRA 714 LHAAEHAAIGLLPLVASCDRGDIGG+STA GP+GLPSVFVYDGYPGGAGFAERGFRRA Sbjct 661 LHAAEHAAIGLLPLVASCDRGDIGGLSTAVGPGPDGLPSVFVYDGYPGGAGFAERGFRRA 720 Query 715 RTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEES 770 RTWL ATA AIEACECP GCPSCVQSPKCGNGNDPLDKAGAV+VLRLVLAEL ES Sbjct 721 RTWLAATAAAIEACECPRGCPSCVQSPKCGNGNDPLDKAGAVQVLRLVLAELPRES 776 >gi|254773484|ref|ZP_05215000.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium avium subsp. avium ATCC 25291] Length=776 Score = 1257 bits (3252), Expect = 0.0, Method: Compositional matrix adjust. Identities = 651/772 (85%), Positives = 701/772 (91%), Gaps = 7/772 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 MASFGS LLAAA+AGT E+PLRHVAELPP++GRP WP WAEP+VV AFA RGI SPW Sbjct 1 MASFGSELLAAALAGTTADEQPLRHVAELPPRSGRPHDWPAWAEPEVVGAFAARGIKSPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQ AA+LA++GRHVV+ TG ASGKSLAYQL LNALATD RAR LYLSPTKALGHDQL Sbjct 61 SHQFTAADLAWSGRHVVVSTGTASGKSLAYQLPALNALATDPRARVLYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLAD----VAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHA 176 RAAHAL AA+PRL + VAPTAYDGDSP EVRRFARERSRW+FSNP+M HLS LRNHA Sbjct 121 RAAHALTAAIPRLREPGFAVAPTAYDGDSPTEVRRFARERSRWVFSNPDMIHLSTLRNHA 180 Query 177 RWAVLLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGA 236 RWAVLLR LRFVIVDECHYYRGVFGS+VAMVLRRLLRLCARY++ P VIFASATT SPGA Sbjct 181 RWAVLLRGLRFVIVDECHYYRGVFGSHVAMVLRRLLRLCARYASAPAVIFASATTDSPGA 240 Query 237 TAADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLI 296 TAA+LIG PV EVTEDGSP+GARTVALWEPALR+D++GE+GAPVRRSAG EAARVMADLI Sbjct 241 TAAELIGLPVREVTEDGSPQGARTVALWEPALRADLVGENGAPVRRSAGGEAARVMADLI 300 Query 297 VEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEG 356 EGAQTLTFVRSRRAAELTALGA+ARL +IAPELS VASYRAGYLAEDR+AL +ALAEG Sbjct 301 AEGAQTLTFVRSRRAAELTALGAQARLDEIAPELSAQVASYRAGYLAEDRTALERALAEG 360 Query 357 QLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL 416 +LRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL Sbjct 361 RLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL 420 Query 417 DTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLV 476 DTYLVH+PAALL KPVERVVIDP NP++LGPQLLCAATELPL +AEVR A EVAE LV Sbjct 421 DTYLVHNPAALLGKPVERVVIDPRNPYILGPQLLCAATELPLQEAEVRELDATEVAEGLV 480 Query 477 DDGLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPG 536 DDGLLRRRNG+YFPAPG++PHAAVD+RGA GGQ+VI+EA TGRLLGS G GQAPA+ HPG Sbjct 481 DDGLLRRRNGKYFPAPGLQPHAAVDIRGA-GGQVVILEADTGRLLGSAGAGQAPASVHPG 539 Query 537 AVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLV 596 AVYLHQGE+YVVDSLD Q+GIAFVHAEDPGYATFARE+TDIAVTG GERLVFGPV LGLV Sbjct 540 AVYLHQGESYVVDSLDLQEGIAFVHAEDPGYATFAREITDIAVTGAGERLVFGPVTLGLV 599 Query 597 PVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGS 656 PV VT+ VVGYLRR+LSGEV+DF+ELDMPEHTL TTA MYTIT +AL +GI+ RIPGS Sbjct 600 PVRVTHRVVGYLRRRLSGEVIDFIELDMPEHTLATTAAMYTITEEALRDNGIDGPRIPGS 659 Query 657 LHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE--GLPSVFVYDGYPGGAGFAERGFRRA 714 LHAAEHAAIGLLPLVASCDRGDIGG+STA GPE GLPSVFVYDG+PGGAGFAERGFRRA Sbjct 660 LHAAEHAAIGLLPLVASCDRGDIGGLSTAVGPEPAGLPSVFVYDGHPGGAGFAERGFRRA 719 Query 715 RTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAEL 766 TWLGATA AIEACECP GCPSCVQSPKCGNGNDPLDKAGA RVLRLVLAEL Sbjct 720 STWLGATAAAIEACECPRGCPSCVQSPKCGNGNDPLDKAGAARVLRLVLAEL 771 >gi|118465087|ref|YP_879796.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium avium 104] gi|118166374|gb|ABK67271.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium avium 104] Length=776 Score = 1256 bits (3251), Expect = 0.0, Method: Compositional matrix adjust. Identities = 651/772 (85%), Positives = 701/772 (91%), Gaps = 7/772 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 MASFGS LLAAA+AGT E+PLRHVAELPP++GRP WP WAEP+VV AFA RGI SPW Sbjct 1 MASFGSELLAAALAGTTADEQPLRHVAELPPRSGRPHDWPAWAEPEVVGAFAARGIKSPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQ AA+LA++GRHVV+ TG ASGKSLAYQL LNALATD RAR LYLSPTKALGHDQL Sbjct 61 SHQFTAADLAWSGRHVVVSTGTASGKSLAYQLPALNALATDPRARVLYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLAD----VAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHA 176 RAAHAL AA+PRL + VAPTAYDGDSP EVRRFARERSRW+FSNP+M HLS LRNHA Sbjct 121 RAAHALTAAIPRLREPGFAVAPTAYDGDSPTEVRRFARERSRWVFSNPDMIHLSTLRNHA 180 Query 177 RWAVLLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGA 236 RWAVLLR LRFVIVDECHYYRGVFGS+VAMVLRRLLRLCARY++ P VIFASATT SPGA Sbjct 181 RWAVLLRGLRFVIVDECHYYRGVFGSHVAMVLRRLLRLCARYASAPAVIFASATTDSPGA 240 Query 237 TAADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLI 296 TAA+LIG PV EVTEDGSP+GARTVALWEPALR+D++GE+GAPVRRSAG EAARVMADLI Sbjct 241 TAAELIGLPVREVTEDGSPQGARTVALWEPALRADLVGENGAPVRRSAGGEAARVMADLI 300 Query 297 VEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEG 356 EGAQTLTFVRSRRAAELTALGA+ARL +IAPELS VASYRAGYLAEDR+AL +ALAEG Sbjct 301 AEGAQTLTFVRSRRAAELTALGAQARLDEIAPELSAQVASYRAGYLAEDRTALERALAEG 360 Query 357 QLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL 416 +LRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL Sbjct 361 RLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL 420 Query 417 DTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLV 476 DTYLVH+PAALL KPVERVVIDP NP++LGPQLLCAATELPL +AEVR A EVAE LV Sbjct 421 DTYLVHNPAALLGKPVERVVIDPRNPYILGPQLLCAATELPLQEAEVRELDATEVAEGLV 480 Query 477 DDGLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPG 536 DDGLLRRRNG+YFPAPG++PHAAVD+RGA GGQ+VI+EA TGRLLGS G GQAPA+ HPG Sbjct 481 DDGLLRRRNGKYFPAPGLQPHAAVDIRGA-GGQVVILEADTGRLLGSAGAGQAPASVHPG 539 Query 537 AVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLV 596 AVYLHQGE+YVVDSLD Q+GIAFVHAEDPGYATFARE+TDIAVTG GERLVFGPV LGLV Sbjct 540 AVYLHQGESYVVDSLDLQEGIAFVHAEDPGYATFAREITDIAVTGAGERLVFGPVTLGLV 599 Query 597 PVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGS 656 PV VT+ VVGYLRR+LSGEV+DF+ELDMPEHTL TTA MYTIT +AL +GI+ RIPGS Sbjct 600 PVRVTHRVVGYLRRRLSGEVIDFIELDMPEHTLATTAAMYTITEEALRDNGIDGPRIPGS 659 Query 657 LHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE--GLPSVFVYDGYPGGAGFAERGFRRA 714 LHAAEHAAIGLLPLVASCDRGDIGG+STA GPE GLPSVFVYDG+PGGAGFAERGFRRA Sbjct 660 LHAAEHAAIGLLPLVASCDRGDIGGLSTAAGPEPAGLPSVFVYDGHPGGAGFAERGFRRA 719 Query 715 RTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAEL 766 TWLGATA AIEACECP GCPSCVQSPKCGNGNDPLDKAGA RVLRLVLAEL Sbjct 720 STWLGATAAAIEACECPRGCPSCVQSPKCGNGNDPLDKAGAARVLRLVLAEL 771 >gi|41406520|ref|NP_959356.1| hypothetical protein MAP0422c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394869|gb|AAS02739.1| hypothetical protein MAP_0422c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460801|gb|EGO39686.1| helicase/secretion neighborhood putative DEAH-box helicase [Mycobacterium avium subsp. paratuberculosis S397] Length=776 Score = 1252 bits (3240), Expect = 0.0, Method: Compositional matrix adjust. Identities = 653/772 (85%), Positives = 702/772 (91%), Gaps = 7/772 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 MASFGS LLAAA+AGT E+PLRHVAELPP+ GRP WP WAEP+VV AFA RGI SPW Sbjct 1 MASFGSELLAAALAGTAADEQPLRHVAELPPRRGRPHDWPAWAEPEVVGAFAARGIKSPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQ AA+LA++GRHVV+ TG ASGKSLAYQL LNALATD RAR LYLSPTKALGHDQL Sbjct 61 SHQFTAADLAWSGRHVVVSTGTASGKSLAYQLPALNALATDPRARVLYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLAD----VAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHA 176 RAAHAL AA+PRL + VAPTAYDGDSP EVRRFARERSRW+FSNP+M HLS LRNHA Sbjct 121 RAAHALTAAIPRLREPGFAVAPTAYDGDSPTEVRRFARERSRWVFSNPDMIHLSTLRNHA 180 Query 177 RWAVLLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGA 236 RWAVLLR LRFVIVDECHYYRGVFGS+VAMVLRRLLRLCARY++ PTVIFASATT SPGA Sbjct 181 RWAVLLRGLRFVIVDECHYYRGVFGSHVAMVLRRLLRLCARYASAPTVIFASATTDSPGA 240 Query 237 TAADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLI 296 TAA+LIG PV EVTEDGSP+GARTVALWEPALR+D++GE+GAPVRRSAGAEAARVMADLI Sbjct 241 TAAELIGLPVREVTEDGSPQGARTVALWEPALRADLVGENGAPVRRSAGAEAARVMADLI 300 Query 297 VEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEG 356 EGAQTLTFVRSRRAAELTALGA+ARL +IAP LS VASYRAGYLAEDR+AL +ALAEG Sbjct 301 AEGAQTLTFVRSRRAAELTALGAQARLDEIAPGLSAQVASYRAGYLAEDRTALERALAEG 360 Query 357 QLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL 416 +LRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL Sbjct 361 RLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL 420 Query 417 DTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLV 476 DTYLVH+PAALL KPVERVVIDP NP++LGPQLLCAATELPL +AEVR A EVAESLV Sbjct 421 DTYLVHNPAALLGKPVERVVIDPRNPYILGPQLLCAATELPLQEAEVRELDATEVAESLV 480 Query 477 DDGLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPG 536 DDGLLRRRNG+YFPAPG++PHAAVD+RGA GGQ+VI+EA TGRLLGS G GQAPA+ HPG Sbjct 481 DDGLLRRRNGKYFPAPGLQPHAAVDIRGA-GGQVVILEADTGRLLGSAGAGQAPASVHPG 539 Query 537 AVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLV 596 AVYLHQGE+YVVDSLD Q+GIAFVHAEDPGYATFARE+TDIAVTG GERLVFGPV LGLV Sbjct 540 AVYLHQGESYVVDSLDLQEGIAFVHAEDPGYATFAREITDIAVTGAGERLVFGPVTLGLV 599 Query 597 PVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGS 656 PV VT+ VVGYLRR+LSGEV+DF+ELDMPEHTL TTA MYTIT +AL +GI+ RIPGS Sbjct 600 PVRVTHRVVGYLRRRLSGEVIDFIELDMPEHTLATTAAMYTITEEALRDNGIDGPRIPGS 659 Query 657 LHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE--GLPSVFVYDGYPGGAGFAERGFRRA 714 LHAAEHAAIGLLPLVASCDRGDIGG+STA GPE GLPSVFVYDG+PGGAGFAERGFRRA Sbjct 660 LHAAEHAAIGLLPLVASCDRGDIGGLSTAVGPEPAGLPSVFVYDGHPGGAGFAERGFRRA 719 Query 715 RTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAEL 766 TWLGATA AIEACECP GCPSCVQSPKCGNGNDPLDKAGA RVLRLVLAEL Sbjct 720 STWLGATAAAIEACECPRGCPSCVQSPKCGNGNDPLDKAGAARVLRLVLAEL 771 >gi|118468463|ref|YP_890380.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium smegmatis str. MC2 155] gi|118169750|gb|ABK70646.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium smegmatis str. MC2 155] Length=776 Score = 1178 bits (3047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/769 (77%), Positives = 665/769 (87%), Gaps = 4/769 (0%) Query 4 FGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQ 63 FG LL AV GTP + PLRHVA+L P+ G+P WP WA PDVV A D GI++PWSHQ Sbjct 8 FGRELLNCAVEGTPGDDNPLRHVADLAPRTGKPVPWPAWAHPDVVRALHDHGITAPWSHQ 67 Query 64 AEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAA 123 AA+LA+ GRHVVI TG ASGKSLAYQL +L+ALA D RAR LYLSPTKALGHDQLRAA Sbjct 68 LSAAQLAHDGRHVVISTGTASGKSLAYQLPILSALADDPRARVLYLSPTKALGHDQLRAA 127 Query 124 HALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLR 183 HAL +V L DVAP YDGDS EVRRFARERSRW+FSNP+M HLS+LRNH+RWAV LR Sbjct 128 HALTESVAALRDVAPAPYDGDSATEVRRFARERSRWIFSNPDMIHLSLLRNHSRWAVFLR 187 Query 184 NLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAH---PTVIFASATTASPGATAAD 240 NLR+++VDECHYYRG+FGSNVAMVLRRLLRLC RYSA+ PTVIFASATT+SP TAA+ Sbjct 188 NLRYIVVDECHYYRGIFGSNVAMVLRRLLRLCERYSANGATPTVIFASATTSSPAETAAE 247 Query 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 LIGQ VVEVTEDGSP+GART+ALWEPAL D+ GE+GAPVRRSAG+EA RVMADL+ EGA Sbjct 248 LIGQTVVEVTEDGSPQGARTIALWEPALLPDLAGENGAPVRRSAGSEAGRVMADLVAEGA 307 Query 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 +TLTFVRSRR AELTALGARARL + AP+L + VASYRAGYLAEDR L AL++G+LRG Sbjct 308 RTLTFVRSRRGAELTALGARARLSETAPDLVEQVASYRAGYLAEDRRELEHALSDGRLRG 367 Query 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 LATTNALELG+DIAGLDAVV+AGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL Sbjct 368 LATTNALELGIDIAGLDAVVMAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 427 Query 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGL 480 VHHPAALLDKP+ERVVIDP NPH+LGPQLLCAA ELPL +AEVR W A VA+ LVDDGL Sbjct 428 VHHPAALLDKPIERVVIDPTNPHVLGPQLLCAAAELPLTEAEVRRWDAEAVAQRLVDDGL 487 Query 481 LRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYL 540 LR+R YFPAPGV PH AVD+RG+ GGQI I+EA TGR+LGS G GQA ++ HPGAVYL Sbjct 488 LRKRPAGYFPAPGVDPHPAVDIRGSTGGQIAILEADTGRMLGSAGAGQAASSVHPGAVYL 547 Query 541 HQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTV 600 HQGE+YVVDSLDF+DGIAFVHAEDPGY TFARE+TDI+VTG GER+ GPV +GLVPV+V Sbjct 548 HQGESYVVDSLDFEDGIAFVHAEDPGYTTFAREITDISVTGPGERVDHGPVTIGLVPVSV 607 Query 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAA 660 TN VVGYLRR++ GEV+DFVELDMP TL T AVM TIT +AL +GIE +PG+LHAA Sbjct 608 TNTVVGYLRRRMDGEVIDFVELDMPPRTLDTMAVMCTITPEALQDNGIEQLSVPGALHAA 667 Query 661 EHAAIGLLPLVASCDRGDIGGMSTATGP-EGLPSVFVYDGYPGGAGFAERGFRRARTWLG 719 EHA+IGLLPLVASCDRGDIGG+STA GP +GLPS+FVYDGYPGGAGFA+RG+R+ +TW G Sbjct 668 EHASIGLLPLVASCDRGDIGGVSTAVGPVDGLPSIFVYDGYPGGAGFADRGYRQLQTWWG 727 Query 720 ATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSE 768 ATA AIEACECPSGCPSCVQSPKCGNGNDPLDKAGAV+VLRLVL L++ Sbjct 728 ATAAAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVKVLRLVLGALTK 776 >gi|145221983|ref|YP_001132661.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145214469|gb|ABP43873.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum PYR-GCK] Length=781 Score = 1159 bits (2999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 589/769 (77%), Positives = 654/769 (86%), Gaps = 6/769 (0%) Query 4 FGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQ 63 FG LLA AV GT E PLRHVA+LPP+ WP WA+PDVV AF D+GI S WSHQ Sbjct 8 FGRELLACAVEGTAADEHPLRHVADLPPRRATSHPWPPWADPDVVQAFHDQGIRSLWSHQ 67 Query 64 AEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAA 123 AA+LA+ GRHVV+ TG ASGKSLAYQL + L + R+R LYLSPTKALGHDQLRAA Sbjct 68 LAAADLAHDGRHVVLSTGTASGKSLAYQLPIATELKRNPRSRVLYLSPTKALGHDQLRAA 127 Query 124 HALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLR 183 AL A+VP L DVAPT YDGDSP EVRRFARERSRW+FSNP+M HLS+LRNHARWAV LR Sbjct 128 AALTASVPGLDDVAPTPYDGDSPSEVRRFARERSRWIFSNPDMIHLSLLRNHARWAVFLR 187 Query 184 NLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYS-----AHPTVIFASATTASPGATA 238 NLR+V+VDECHYYRG+FGSNVAMVLRRLLRLCARY+ + PTV+FASATTA P TA Sbjct 188 NLRYVVVDECHYYRGIFGSNVAMVLRRLLRLCARYAPAGDVSGPTVVFASATTAQPAITA 247 Query 239 ADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVE 298 ++LIGQ V EVTEDGSP+GART+ALWEPAL D++GE+GAPVRRSAGAEAARVMADLI E Sbjct 248 SELIGQTVAEVTEDGSPQGARTIALWEPALIPDLLGENGAPVRRSAGAEAARVMADLIAE 307 Query 299 GAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQL 358 GA+TLTFVRSRR AEL ALGAR RL D AP+L+D VASYRAGYLAEDR L +ALA+G+L Sbjct 308 GARTLTFVRSRRGAELAALGARTRLADTAPDLADQVASYRAGYLAEDRRRLERALADGEL 367 Query 359 RGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDT 418 RG+ATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGR+GRRGQGALVVLIARDDPLDT Sbjct 368 RGMATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRAGRRGQGALVVLIARDDPLDT 427 Query 419 YLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDD 478 YLVHHPAALLDKP+ERVVIDP NP++LGPQLLCAATELPL +AEVR W A VA LVDD Sbjct 428 YLVHHPAALLDKPIERVVIDPANPYVLGPQLLCAATELPLTEAEVRMWDAESVAAGLVDD 487 Query 479 GLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAV 538 GLLRRR +FPAPG+ PH AVD+RG+ GGQI I+E GTGR+LGS G GQAPA+ HPGAV Sbjct 488 GLLRRRPSGFFPAPGLDPHPAVDIRGSTGGQIAILEDGTGRMLGSTGAGQAPASVHPGAV 547 Query 539 YLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPV 598 YLHQGE+YVVDSLDF+DGIAFVHAEDPGY TFAREVTDI+VTG GER GPV +GLVPV Sbjct 548 YLHQGESYVVDSLDFEDGIAFVHAEDPGYTTFAREVTDISVTGAGERSGHGPVTVGLVPV 607 Query 599 TVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLH 658 +VTN V GYLRR+L GEV+DF+ELDMP TL T A M TIT +AL +GI+ RIPG+LH Sbjct 608 SVTNTVTGYLRRRLDGEVIDFIELDMPTRTLNTMAAMCTITPEALQDAGIDPLRIPGALH 667 Query 659 AAEHAAIGLLPLVASCDRGDIGGMSTATGP-EGLPSVFVYDGYPGGAGFAERGFRRARTW 717 AAEHAAIGLLPL+ASCDRGDIGG+STA GP +GLP++FVYDGYPGGAGFA RGFR W Sbjct 668 AAEHAAIGLLPLMASCDRGDIGGVSTAVGPVDGLPTIFVYDGYPGGAGFAARGFRTLARW 727 Query 718 LGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAEL 766 ATA AIEACECPSGCPSCVQSPKCGNGNDPLDK GA+RVLRLV+ L Sbjct 728 WEATASAIEACECPSGCPSCVQSPKCGNGNDPLDKDGAIRVLRLVIGAL 776 >gi|315446277|ref|YP_004079156.1| helicase family protein with metal-binding cysteine cluster [Mycobacterium sp. Spyr1] gi|315264580|gb|ADU01322.1| helicase family protein with metal-binding cysteine cluster [Mycobacterium sp. Spyr1] Length=781 Score = 1159 bits (2998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 590/769 (77%), Positives = 652/769 (85%), Gaps = 6/769 (0%) Query 4 FGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQ 63 FG LLA AV GT E PLRHVA+LPP+ WP WA+PDVV AF D+GI S WSHQ Sbjct 8 FGRELLACAVEGTAADEHPLRHVADLPPRRATSHPWPPWADPDVVQAFHDQGIRSLWSHQ 67 Query 64 AEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAA 123 AA+LA+ GRHVV+ TG ASGKSLAYQL + L + R+R LYLSPTKALGHDQLRAA Sbjct 68 LAAADLAHDGRHVVLSTGTASGKSLAYQLPIATELKRNPRSRVLYLSPTKALGHDQLRAA 127 Query 124 HALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLR 183 AL A+VP L DVAPT YDGDSP EVRRFARERSRW+FSNP+M HLS+LRNHARWAV LR Sbjct 128 AALTASVPGLDDVAPTPYDGDSPSEVRRFARERSRWIFSNPDMIHLSLLRNHARWAVFLR 187 Query 184 NLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYS-----AHPTVIFASATTASPGATA 238 NLRFV+VDECHYYRG+FGSNVAMVLRRLLRLCARY+ + PTV+FASATTA P TA Sbjct 188 NLRFVVVDECHYYRGIFGSNVAMVLRRLLRLCARYAPAGDVSGPTVVFASATTAQPAVTA 247 Query 239 ADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVE 298 ++LIGQ V EVTEDGSP+G RT+ALWEPAL D++GE+GAPVRRSAGAEAARVMADLI E Sbjct 248 SELIGQTVAEVTEDGSPQGTRTIALWEPALIPDLLGENGAPVRRSAGAEAARVMADLIAE 307 Query 299 GAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQL 358 GA+TLTFVRSRR AEL ALGAR RL D AP+L+D VASYRAGYLAEDR L +ALA+G+L Sbjct 308 GARTLTFVRSRRGAELAALGARTRLADTAPDLADQVASYRAGYLAEDRRRLERALADGEL 367 Query 359 RGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDT 418 RG+ATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGR+GRRGQGALVVLIARDDPLDT Sbjct 368 RGMATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRAGRRGQGALVVLIARDDPLDT 427 Query 419 YLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDD 478 YLVHHPAALLDKP+ERVVIDP NP++LGPQLLCAATELPL +AEVR W A VA LVDD Sbjct 428 YLVHHPAALLDKPIERVVIDPANPYVLGPQLLCAATELPLTEAEVRMWDAESVAAGLVDD 487 Query 479 GLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAV 538 GLLRRR +FPAPG+ PH AVD+RG+ GGQI I+E GTGR+LGS G GQAPA+ HPGAV Sbjct 488 GLLRRRPSGFFPAPGLDPHPAVDIRGSTGGQIAILEDGTGRMLGSTGAGQAPASVHPGAV 547 Query 539 YLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPV 598 YLHQGE+YVVDSLDF+DGIAFVHAEDPGY TFAREVTDI+VTG GER GPV +GLVPV Sbjct 548 YLHQGESYVVDSLDFEDGIAFVHAEDPGYTTFAREVTDISVTGAGERSGHGPVTVGLVPV 607 Query 599 TVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLH 658 +VTN V GYLRR+L GEV+DFVELDMP TL T A M TIT +AL GI+ RIPG+LH Sbjct 608 SVTNTVTGYLRRRLDGEVIDFVELDMPTRTLNTMAAMCTITPEALQDVGIDPLRIPGALH 667 Query 659 AAEHAAIGLLPLVASCDRGDIGGMSTATGP-EGLPSVFVYDGYPGGAGFAERGFRRARTW 717 AAEHAAIGLLPL+ASCDRGDIGG+STA GP +GLP++FVYDGYPGGAGFA RGFR W Sbjct 668 AAEHAAIGLLPLMASCDRGDIGGVSTAVGPVDGLPTIFVYDGYPGGAGFAARGFRTLARW 727 Query 718 LGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAEL 766 ATA AIEACECPSGCPSCVQSPKCGNGNDPLDK GA+RVLRLV+ L Sbjct 728 WEATASAIEACECPSGCPSCVQSPKCGNGNDPLDKDGAIRVLRLVIGAL 776 >gi|126437749|ref|YP_001073440.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. JLS] gi|126237549|gb|ABO00950.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS] Length=775 Score = 1139 bits (2946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/772 (77%), Positives = 667/772 (87%), Gaps = 4/772 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 M+ FG LL+ AVAG E PLRHVA+LPP+ G+P WP+WA PDVV AF DRG+ +PW Sbjct 1 MSDFGRELLSCAVAGVVADEHPLRHVADLPPRPGQPESWPQWAHPDVVRAFVDRGVRTPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQ AA+LA+ GRHVV+ TG ASGKSLAYQL +L+A+A++ R RALYLSPTKALGHDQL Sbjct 61 SHQRAAADLAHDGRHVVLSTGTASGKSLAYQLPILSAMASEPRTRALYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 R A AL AVP L DVAP++YDGDSP +VRRFARERSRW+FSNP+M HLS+LRNHARWAV Sbjct 121 RTAQALTDAVPALHDVAPSSYDGDSPVDVRRFARERSRWIFSNPDMIHLSLLRNHARWAV 180 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHP---TVIFASATTASPGAT 237 LR+L+F++VDECHYYRG+FGSNVA+VLRRLLRLCARYSA P TV+FASATTA+P AT Sbjct 181 FLRHLKFIVVDECHYYRGIFGSNVALVLRRLLRLCARYSADPGGPTVVFASATTAAPSAT 240 Query 238 AADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIV 297 AA+LIGQ V EVTEDGSP+GARTVALWEPAL +D++GE+GAPVRRSAGAEAARVMADLI Sbjct 241 AAELIGQTVTEVTEDGSPQGARTVALWEPALLTDLVGENGAPVRRSAGAEAARVMADLIA 300 Query 298 EGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQ 357 EGA+TLTFVRSRR AELTALGARARL ++APEL + VASYRAGYLAEDR L +ALA+G+ Sbjct 301 EGARTLTFVRSRRGAELTALGARARLEEVAPELVEQVASYRAGYLAEDRRELERALADGR 360 Query 358 LRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLD 417 LRGLATTNALELGVDIAGLDAVVLAGFPGTV SFWQQAGRSGRRGQGAL+VL+ARDDPLD Sbjct 361 LRGLATTNALELGVDIAGLDAVVLAGFPGTVTSFWQQAGRSGRRGQGALIVLVARDDPLD 420 Query 418 TYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVD 477 TYLVHHP ALLD+P+ERVVIDP NP++L PQLLCAATELPL +EVR W A VAESLVD Sbjct 421 TYLVHHPEALLDRPIERVVIDPANPYVLAPQLLCAATELPLTHSEVRMWDAETVAESLVD 480 Query 478 DGLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGA 537 DGLLRRR YFP PG+ PH AVD+RG+ GGQI I+EA TGR+LGS GQA A+ HPGA Sbjct 481 DGLLRRRAHGYFPVPGLDPHPAVDIRGSTGGQIAILEADTGRMLGSANAGQAAASVHPGA 540 Query 538 VYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVP 597 VYLHQGE+YVVDSL F+DG+AFVHAEDPGY TFAREVTDIAVTG GER +G V +GLVP Sbjct 541 VYLHQGESYVVDSLSFEDGVAFVHAEDPGYTTFAREVTDIAVTGAGERESYGAVTVGLVP 600 Query 598 VTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSL 657 V+V+N VVGYLRR+L GEV+DFVELDMP TL T A M TIT +AL+ +GI+ R PGSL Sbjct 601 VSVSNTVVGYLRRRLDGEVIDFVELDMPTRTLDTMAAMCTITPEALLDNGIDPLRFPGSL 660 Query 658 HAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRART 716 HAAEHAAIGLLPLVASCDRGDIGG+STA GPE GLP++FVYDGYPGGAGFA RG+ + RT Sbjct 661 HAAEHAAIGLLPLVASCDRGDIGGVSTAVGPEDGLPTIFVYDGYPGGAGFAARGYGQIRT 720 Query 717 WLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSE 768 W ATA+AIEACECP GCPSCVQSPKCGNGNDPLDK GAVRVLRLVL L + Sbjct 721 WWKATADAIEACECPGGCPSCVQSPKCGNGNDPLDKVGAVRVLRLVLQALDD 772 >gi|108801762|ref|YP_641959.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119870913|ref|YP_940865.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. KMS] gi|108772181|gb|ABG10903.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119697002|gb|ABL94075.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS] Length=775 Score = 1138 bits (2943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/772 (77%), Positives = 667/772 (87%), Gaps = 4/772 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 M+ FG LL+ AVAG E PLRHVA+LP + G+P WP+WA PDVV AF DRG+ +PW Sbjct 1 MSDFGRELLSCAVAGVVADEHPLRHVADLPARPGQPESWPQWAHPDVVRAFVDRGVRTPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQ AA+LA+ GRHVV+ TG ASGKSLAYQL +L+A+A++ R RALYLSPTKALGHDQL Sbjct 61 SHQRAAADLAHDGRHVVLSTGTASGKSLAYQLPILSAMASEPRTRALYLSPTKALGHDQL 120 Query 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 R A AL AVP L DVAP++YDGDSP +VRRFARERSRW+FSNP+M HLS+LRNHARWAV Sbjct 121 RTAQALTDAVPALHDVAPSSYDGDSPVDVRRFARERSRWIFSNPDMIHLSLLRNHARWAV 180 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHP---TVIFASATTASPGAT 237 LR+L+F++VDECHYYRG+FGSNVA+VLRRLLRLCARYSA P TV+FASATTA+P AT Sbjct 181 FLRHLKFIVVDECHYYRGIFGSNVALVLRRLLRLCARYSADPGGPTVVFASATTAAPSAT 240 Query 238 AADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIV 297 AA+LIGQ V EVTEDGSP+GARTVALWEPAL +D++GE+GAPVRRSAGAEAARVMADLI Sbjct 241 AAELIGQTVTEVTEDGSPQGARTVALWEPALLTDLVGENGAPVRRSAGAEAARVMADLIA 300 Query 298 EGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQ 357 EGA+TLTFVRSRR AELTALGARARL ++APEL + VASYRAGYLAEDR L +ALA+G+ Sbjct 301 EGARTLTFVRSRRGAELTALGARARLEEVAPELVEQVASYRAGYLAEDRRELERALADGR 360 Query 358 LRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLD 417 LRGLATTNALELGVDIAGLDAVVLAGFPGTV SFWQQAGRSGRRGQGAL+VL+ARDDPLD Sbjct 361 LRGLATTNALELGVDIAGLDAVVLAGFPGTVTSFWQQAGRSGRRGQGALIVLVARDDPLD 420 Query 418 TYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVD 477 TYLVHHP ALLD+P+ERVVIDP NP++L PQLLCAATELPL D+EVR W A VAESLVD Sbjct 421 TYLVHHPEALLDRPIERVVIDPANPYVLAPQLLCAATELPLTDSEVRMWDAETVAESLVD 480 Query 478 DGLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGA 537 DGLLRRR YFP PG+ PH AVD+RG+ GGQI I+EA TGR+LGS GQA A+ HPGA Sbjct 481 DGLLRRRAHGYFPVPGLDPHPAVDIRGSTGGQIAILEADTGRMLGSANAGQAAASVHPGA 540 Query 538 VYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVP 597 VYLHQGE+YVVDSL F+DG+AFVHAEDPGY TFAREVT+IAVTG GER +G V +GLVP Sbjct 541 VYLHQGESYVVDSLSFEDGVAFVHAEDPGYTTFAREVTEIAVTGAGERESYGAVTVGLVP 600 Query 598 VTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSL 657 V+V+N VVGYLRR+L GEV+DFVELDMP TL T A M TIT +AL+ +GI+ R PGSL Sbjct 601 VSVSNTVVGYLRRRLDGEVIDFVELDMPTRTLDTMAAMCTITPEALLDNGIDPLRFPGSL 660 Query 658 HAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRART 716 HAAEHAAIGLLPLVASCDRGDIGG+STA GPE GLP++FVYDGYPGGAGFA RGF + RT Sbjct 661 HAAEHAAIGLLPLVASCDRGDIGGVSTAVGPEDGLPTIFVYDGYPGGAGFAARGFGQIRT 720 Query 717 WLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSE 768 W ATA+AIEACECP GCPSCVQSPKCGNGNDPLDK GAVRVLRLVL L + Sbjct 721 WWTATADAIEACECPGGCPSCVQSPKCGNGNDPLDKVGAVRVLRLVLRALDD 772 >gi|333992574|ref|YP_004525188.1| DEAD/DEAH box helicase [Mycobacterium sp. JDM601] gi|333488542|gb|AEF37934.1| DEAD/DEAH box helicase [Mycobacterium sp. JDM601] Length=782 Score = 1129 bits (2921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 595/776 (77%), Positives = 655/776 (85%), Gaps = 11/776 (1%) Query 3 SFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 +FG LLAAA+AG PGE PLRHVA+LP G+ WP+WA DVV AF RGI PWSH Sbjct 2 NFGGELLAAALAGIEPGEDPLRHVADLPASPGQAGAWPDWAGDDVVGAFTGRGIERPWSH 61 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 Q AAELA+ GRHVVIGTG ASGKSLAYQL V+ ALA D RARALYLSPTKALGHDQLR Sbjct 62 QLAAAELAHTGRHVVIGTGTASGKSLAYQLPVMAALAADPRARALYLSPTKALGHDQLRT 121 Query 123 AHALAAAVPRLADVAPTA----YDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARW 178 AH L AAVPRL++ A YDGDS E+RRFARERSRW+FSNP+M HLS+LRNHARW Sbjct 122 AHTLTAAVPRLSEAAAAVAPIAYDGDSSAELRRFARERSRWVFSNPDMIHLSLLRNHARW 181 Query 179 AVLLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSA----HPTVIFASATTASP 234 AV LR LRFVIVDECHYYRGVFGS+VAMVLRRLLRLCARY+A PTVIFASATTA+P Sbjct 182 AVFLRGLRFVIVDECHYYRGVFGSHVAMVLRRLLRLCARYTAPGAPGPTVIFASATTAAP 241 Query 235 GATAADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMAD 294 GA+AA LIGQPV EVT+DGSP GARTVALWEPALR D+ GE+GAPVRR+AG EAARVMAD Sbjct 242 GASAAALIGQPVAEVTQDGSPHGARTVALWEPALRGDMTGENGAPVRRAAGTEAARVMAD 301 Query 295 LIVEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALA 354 LI EGA+TLTFVRSRR AELTAL AR RL +AP L+D VASYRAGYLAEDR L +ALA Sbjct 302 LIAEGARTLTFVRSRRGAELTALAARTRLESVAPALADKVASYRAGYLAEDRRGLERALA 361 Query 355 EGQLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDD 414 +G+L GLATTNALELGVDIAGLDAVV+AGFPGTV SFWQQAGRSGRRGQ AL+VLIARDD Sbjct 362 DGELYGLATTNALELGVDIAGLDAVVIAGFPGTVTSFWQQAGRSGRRGQTALIVLIARDD 421 Query 415 PLDTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAES 474 PLD+YLVHHPAALLDKP+E+VVIDP NP++LGPQLLCAATELPL AEV GA VAE+ Sbjct 422 PLDSYLVHHPAALLDKPIEQVVIDPANPYVLGPQLLCAATELPLTVAEVAQLGAERVAEN 481 Query 475 LVDDGLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAH 534 LVDDGLLRRR+ +YFPAPG+ PH VD+RGA GGQ+VIVEA TGRLLG+V G+APA H Sbjct 482 LVDDGLLRRRSEKYFPAPGLDPHHEVDIRGAAGGQVVIVEADTGRLLGNVDAGRAPATVH 541 Query 535 PGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALG 594 GAVYLHQGE+Y+VDSLD + IAFVHAEDPGYATFARE+TDIAVTG GER FGPV+LG Sbjct 542 TGAVYLHQGESYLVDSLDTERRIAFVHAEDPGYATFAREITDIAVTGDGERAWFGPVSLG 601 Query 595 LVPVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIP 654 L+PVTVT +VGYLRR +GEVLDFVEL++P TLPTTAV+YT+T++AL GI RIP Sbjct 602 LMPVTVTRQIVGYLRRLPTGEVLDFVELELPPATLPTTAVVYTVTAEALADCGITEARIP 661 Query 655 GSLHAAEHAAIGLLPLVASCDRGDIGGMSTATGP---EGLPSVFVYDGYPGGAGFAERGF 711 G+LHAAEHAAIGLLPLVASCDRGDIGG+S A GP LPSVFVYDGYPGGAGFA+RGF Sbjct 662 GALHAAEHAAIGLLPLVASCDRGDIGGLSMALGPGSLGALPSVFVYDGYPGGAGFAQRGF 721 Query 712 RRARTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELS 767 R A TWL AT E IE CECP GCPSCVQSPKCGNGNDPLDK GAVRVLRLVL L+ Sbjct 722 RSAATWLAATVETIEGCECPHGCPSCVQSPKCGNGNDPLDKDGAVRVLRLVLDRLN 777 >gi|120406347|ref|YP_956176.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119959165|gb|ABM16170.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii PYR-1] Length=782 Score = 1129 bits (2920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 596/771 (78%), Positives = 667/771 (87%), Gaps = 7/771 (0%) Query 4 FGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQ 63 FG LLA AV GT GE PLRHVA+LPP+ R + WP WA+PDVV AF DRG+ + WSHQ Sbjct 8 FGRELLACAVDGTAAGEYPLRHVADLPPRRARAQAWPHWADPDVVRAFHDRGVEALWSHQ 67 Query 64 AEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAA 123 AAELA GRHVV+ TG ASGKSLAYQL +L AL + R+RALYLSPTKALGHDQLRAA Sbjct 68 LAAAELARDGRHVVLSTGTASGKSLAYQLPILTALKENPRSRALYLSPTKALGHDQLRAA 127 Query 124 HALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLR 183 AL AAVP LADVAPT YDGDSP EVRRFARERSRW+FSNP+M HLS+LRNHARWAV LR Sbjct 128 AALTAAVPGLADVAPTPYDGDSPTEVRRFARERSRWIFSNPDMIHLSMLRNHARWAVFLR 187 Query 184 NLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAH------PTVIFASATTASPGAT 237 +L+++++DECHYYRG+FGSNVAMVLRRLLRLCARYSA PTVIFASATTA P AT Sbjct 188 HLQYLVIDECHYYRGIFGSNVAMVLRRLLRLCARYSATGADFSGPTVIFASATTAQPAAT 247 Query 238 AADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIV 297 A++LIGQ V EVTEDGSP+GARTVALWEPAL +D++GE+GAPVRRSAGAEA+RVMADLI Sbjct 248 ASELIGQTVAEVTEDGSPQGARTVALWEPALIADLVGENGAPVRRSAGAEASRVMADLIA 307 Query 298 EGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQ 357 EGA+TLTFVRSRR AEL ALGARARL D APEL+ VASYRAGYLAEDR AL +ALAEG+ Sbjct 308 EGARTLTFVRSRRGAELAALGARARLADTAPELAQQVASYRAGYLAEDRRALERALAEGE 367 Query 358 LRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLD 417 LRG+ATTNALELG+DIAGLDAVVLAGFPGTVASFWQQAGR+GRRGQGAL+VLIARDDPLD Sbjct 368 LRGVATTNALELGMDIAGLDAVVLAGFPGTVASFWQQAGRAGRRGQGALIVLIARDDPLD 427 Query 418 TYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVD 477 TYLVHHPAALLDKP+ERVVIDP NP++LGPQLLCAATELPL DAEVR WGA VAESLVD Sbjct 428 TYLVHHPAALLDKPIERVVIDPANPYVLGPQLLCAATELPLTDAEVRMWGAEPVAESLVD 487 Query 478 DGLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGA 537 DGLLRRR +FPAPG+ PH AVD+RG+ GGQI I+EAGTGR+LGS G GQAPA+ HPGA Sbjct 488 DGLLRRRPSGFFPAPGLDPHPAVDIRGSTGGQIAILEAGTGRMLGSAGAGQAPASVHPGA 547 Query 538 VYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVP 597 VYLHQGE+YVVDSLDF+D +AFVHAEDPGY TFARE+TDI VTG GER +GPV +GLVP Sbjct 548 VYLHQGESYVVDSLDFEDAVAFVHAEDPGYTTFARELTDINVTGAGERAGYGPVTVGLVP 607 Query 598 VTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSL 657 V+V+N V GYLRR++ GEV+DFVELDMP +L T AVM TIT +AL +GI+ R+PGSL Sbjct 608 VSVSNTVTGYLRRRMDGEVIDFVELDMPTRSLETMAVMCTITPEALQDNGIDPLRLPGSL 667 Query 658 HAAEHAAIGLLPLVASCDRGDIGGMSTATGP-EGLPSVFVYDGYPGGAGFAERGFRRART 716 HAAEHAAIGLLPL+ASCDRGDIGG+STA GP +GLP++FVYDGYPGGAGFA RGFR Sbjct 668 HAAEHAAIGLLPLMASCDRGDIGGVSTAVGPVDGLPTIFVYDGYPGGAGFAARGFRTMDR 727 Query 717 WLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELS 767 W ATA AIEACECPSGCPSCVQSPKCGNGNDPLDK GA+ VLR+V+ L+ Sbjct 728 WWEATASAIEACECPSGCPSCVQSPKCGNGNDPLDKDGAILVLRMVVRLLT 778 >gi|169627590|ref|YP_001701239.1| DEAD-box ATP dependent DNA helicase [Mycobacterium abscessus ATCC 19977] gi|169239557|emb|CAM60585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mycobacterium abscessus] Length=769 Score = 1060 bits (2740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 520/764 (69%), Positives = 611/764 (80%), Gaps = 2/764 (0%) Query 4 FGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQ 63 +G LL VAGTP GE P+RH+ ++P + WP+WA PD + AFA +G+++PWSHQ Sbjct 5 YGRELLDLIVAGTPSGETPVRHICDIPARNAEVTSWPQWAHPDAIAAFAAQGVTAPWSHQ 64 Query 64 AEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAA 123 AA LA+AGRHVV+ TG ASGKS+AYQL +L ALA++ RARALYL+PTKALGHDQLRA Sbjct 65 VAAATLAFAGRHVVVATGTASGKSVAYQLPILTALASEPRARALYLAPTKALGHDQLRAV 124 Query 124 HALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLR 183 L V V P YDGDS +E+RRFARE SRW+F+NP+M H+S+L NH RW+ LR Sbjct 125 RELITGVDNFERVQPCTYDGDSSNELRRFARESSRWIFTNPDMIHVSLLHNHTRWSAFLR 184 Query 184 NLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLIG 243 LR+++VDECHYYRGVFGSNVA++L+RLLRLC RY +HPTV+FASATTA+PGA A LIG Sbjct 185 GLRYLVVDECHYYRGVFGSNVALILQRLLRLCERYGSHPTVVFASATTANPGAAAQALIG 244 Query 244 QPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQTL 303 QPV EV DGSP G RTVALWEP L + GE+GAPVRR E +R++ADL+ EGA+TL Sbjct 245 QPVEEVVADGSPHGMRTVALWEPPLLP-ITGENGAPVRRPVSTETSRLLADLVQEGARTL 303 Query 304 TFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLAT 363 FVRSRR AE+TALGA RL ++ P L VA+YRAGYL EDR AL QAL+ G L G AT Sbjct 304 AFVRSRRGAEMTALGAAHRLSEVDPGLVSQVAAYRAGYLPEDRRALEQALSSGTLTGAAT 363 Query 364 TNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHH 423 TNALELGVDIAGLDAVV+AGFPGTVASFWQQAGRSGRRGQG+LVVL+ARDDPLDTYLVHH Sbjct 364 TNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVARDDPLDTYLVHH 423 Query 424 PAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLRR 483 P ALLDKP+E VVIDP NPH+L P LLCAATELPL + +VRS A +V LVDDGLLR+ Sbjct 424 PEALLDKPIEAVVIDPTNPHVLRPHLLCAATELPLTEDDVRSLDAGQVVSDLVDDGLLRK 483 Query 484 RNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQG 543 R G YF APG+ P+AAVD+RG+IGGQ++I+EA TGR+LG+V G+APA HPGAVYLH G Sbjct 484 RPGGYFAAPGLNPYAAVDIRGSIGGQVMILEADTGRVLGTVDTGRAPATVHPGAVYLHSG 543 Query 544 ETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTVTNH 603 ETYVVDSLDF DGIA VH + P Y+TFAR DIA+TG GER+ G + +GLVPV VT+ Sbjct 544 ETYVVDSLDFGDGIALVHNDRPDYSTFARSTIDIAITGEGERIDLGDIQIGLVPVDVTHQ 603 Query 604 VVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHA 663 V+GYLR +GE+LDFVELDMP TL T AVMYT+T +AL I+ PG+LHAAEHA Sbjct 604 VIGYLRTLTTGEILDFVELDMPSSTLSTKAVMYTVTPEALAGIDIDPLSTPGALHAAEHA 663 Query 664 AIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRARTWLGATA 722 AIGLLPLVASCDRGDIGG+STA PE GLP+VFVYDG+PGGAGFA RG+ + TWLGATA Sbjct 664 AIGLLPLVASCDRGDIGGVSTALQPETGLPTVFVYDGHPGGAGFAARGYHKLATWLGATA 723 Query 723 EAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAEL 766 +AI+ACEC +GCPSCVQSPKCGNGN PLDK AV+VLRLVL+ L Sbjct 724 DAIDACECDAGCPSCVQSPKCGNGNSPLDKRAAVKVLRLVLSRL 767 >gi|325675221|ref|ZP_08154906.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707] gi|325553927|gb|EGD23604.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707] Length=768 Score = 972 bits (2514), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/765 (67%), Positives = 597/765 (79%), Gaps = 1/765 (0%) Query 8 LLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAA 67 LL +AGTPPGE PL A+LPP+ WPEWA+P VV A GI PWSHQAEAA Sbjct 2 LLDRILAGTPPGEHPLTFTADLPPRVSSYSEWPEWADPAVVRALRAAGIPQPWSHQAEAA 61 Query 68 ELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAAHALA 127 +A AG HVV+ TG ASGKSLAYQL VL ALA +SR ALYLSPTKALG DQLRA AL Sbjct 62 SIAAAGEHVVVATGTASGKSLAYQLPVLTALAGESRGTALYLSPTKALGADQLRATAALT 121 Query 128 AAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNLRF 187 + P L + P +DGD+ E+R++AR SRW+F+NP+M HL +LR+H RW+ LLRNLR+ Sbjct 122 ESEPDLLSIHPCLFDGDTSIELRQWARANSRWIFTNPDMLHLGILRSHQRWSHLLRNLRY 181 Query 188 VIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLIGQPVV 247 V+VDECH YRGVFGSNVA+VLRRL R+ ARY AHPT + ASATTA PGA A+ LIG P Sbjct 182 VVVDECHSYRGVFGSNVALVLRRLRRIAARYGAHPTFVLASATTADPGAAASRLIGAPCA 241 Query 248 EVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQTLTFVR 307 +VTEDGSP G RT+ALWEP L + V GE+GAPVRR+AG+EA+R+MADL+VEGA+TLTFVR Sbjct 242 QVTEDGSPHGPRTIALWEPPLLASVTGENGAPVRRAAGSEASRIMADLLVEGARTLTFVR 301 Query 308 SRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLATTNAL 367 SRR AELTA+GAR L D+ P+L+D VA+YRAGYLAEDR L ALA+G+L G+ATTNAL Sbjct 302 SRRGAELTAIGARRALADVDPDLADRVAAYRAGYLAEDRRDLESALADGRLLGVATTNAL 361 Query 368 ELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHPAAL 427 ELGVDIAGLDAVV+AGFPGTVASFWQQAGRSGRRGQG+LVVL+ARDDPLDTYLVHHP+AL Sbjct 362 ELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVARDDPLDTYLVHHPSAL 421 Query 428 LDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLRRRNGR 487 LD+PVE V DP NP++LGPQLLCAA ELPL DAEV +GA EV L GL+RRR Sbjct 422 LDRPVEATVTDPTNPYVLGPQLLCAALELPLSDAEVADFGATEVLTELAAQGLIRRRAHG 481 Query 488 YFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQGETYV 547 +F PH+A+D+RG IG QI IV++ +GRLLG+V G+APA AHPGAV++HQGE++V Sbjct 482 WFVTAESDPHSALDIRGGIGAQIAIVDSESGRLLGTVDAGRAPATAHPGAVHIHQGESFV 541 Query 548 VDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTVTNHVVGY 607 VD LD +G+A VH E+P + T AREVTDIA+ E +G V + LV V VT+ VVGY Sbjct 542 VDHLDLDEGLALVHPEEPDWTTSAREVTDIAIADVAEHKRYGEVGVALVQVEVTHQVVGY 601 Query 608 LRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIGL 667 LRR SGEVLD VELDMP TL T AVMYT+T + L GI A R+PG+LHAAEHAAIGL Sbjct 602 LRRLSSGEVLDSVELDMPAQTLHTRAVMYTVTPELLEEHGIGADRVPGALHAAEHAAIGL 661 Query 668 LPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRARTWLGATAEAIE 726 LPLVA+CDRGDIGG+STA P+ GLP+VFVYDG+PGGAGFA+RG WLGAT EAI+ Sbjct 662 LPLVATCDRGDIGGVSTALHPDTGLPTVFVYDGHPGGAGFADRGHDELVRWLGATREAID 721 Query 727 ACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 ACEC +GCPSCV SPKCGNGN PLDK GAV VL +L ++ P Sbjct 722 ACECVAGCPSCVHSPKCGNGNHPLDKDGAVLVLTAILGAVTPSGP 766 >gi|312138016|ref|YP_004005352.1| dead/deah box helicase [Rhodococcus equi 103S] gi|311887355|emb|CBH46666.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S] Length=768 Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/765 (67%), Positives = 596/765 (78%), Gaps = 1/765 (0%) Query 8 LLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAA 67 LL +AGTPPGE PL A+LPP+ WPEWA+P V A GI PWSHQAEAA Sbjct 2 LLDRILAGTPPGEHPLTFTADLPPRVSSYSEWPEWADPAAVRALRAAGIPQPWSHQAEAA 61 Query 68 ELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAAHALA 127 +A AG HVV+ TG ASGKSLAYQL VL ALA +SR ALYLSPTKALG DQLRA AL Sbjct 62 SIAAAGEHVVVATGTASGKSLAYQLPVLTALAGESRGTALYLSPTKALGADQLRATAALT 121 Query 128 AAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNLRF 187 + P L + P +DGD+ E+R++AR SRW+F+NP+M HL +LR+H RW+ LLRNLR+ Sbjct 122 ESEPDLRSIHPCLFDGDTSIELRQWARANSRWIFTNPDMLHLGILRSHQRWSHLLRNLRY 181 Query 188 VIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLIGQPVV 247 V+VDECH YRGVFGSNVA+VLRRL R+ ARY AHPT + ASATTA PGA A+ LIG P Sbjct 182 VVVDECHSYRGVFGSNVALVLRRLRRIAARYGAHPTFVLASATTAEPGAAASRLIGAPCA 241 Query 248 EVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQTLTFVR 307 +VTEDGSP G RT+ALWEP L + V GE+GAPVRR+AG+EA+R+MADL+VEGA+TLTFVR Sbjct 242 QVTEDGSPHGPRTIALWEPPLLASVTGENGAPVRRAAGSEASRIMADLLVEGARTLTFVR 301 Query 308 SRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLATTNAL 367 SRR AELTA+GAR L D+ P+L+D VA+YRAGYLAEDR L ALA+G+L G+ATTNAL Sbjct 302 SRRGAELTAIGARRALADVDPDLADRVAAYRAGYLAEDRRDLESALADGRLLGVATTNAL 361 Query 368 ELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHPAAL 427 ELGVDIA LDAVV+AGFPGTVASFWQQAGRSGRRGQG+LVVL+ARDDPLDTYLVHHP+AL Sbjct 362 ELGVDIAELDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVARDDPLDTYLVHHPSAL 421 Query 428 LDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLRRRNGR 487 LD+PVE V DP NP++LGPQLLCAA ELPL DAEV +GA EV L GL+RRR Sbjct 422 LDRPVEATVTDPTNPYVLGPQLLCAALELPLSDAEVADFGATEVLTELAAQGLIRRRAHG 481 Query 488 YFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQGETYV 547 +F PH+A+D+RG IG QI IV++ +GRLLG+V G+APA AHPGAV++HQGE++V Sbjct 482 WFVTAESDPHSALDIRGGIGAQIAIVDSESGRLLGTVDAGRAPATAHPGAVHIHQGESFV 541 Query 548 VDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTVTNHVVGY 607 VD LD +G+A VH E+P + T AREVTDIA+ E +G V + LV V VT+ VVGY Sbjct 542 VDHLDLDEGLALVHPEEPDWTTSAREVTDIAIADVAEHKRYGEVGVALVQVEVTHQVVGY 601 Query 608 LRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIGL 667 LRR SGEVLD VELDMP TL T AVMYT+T + L GI A R+PG+LHAAEHAAIGL Sbjct 602 LRRLSSGEVLDSVELDMPAQTLHTRAVMYTVTPELLEEHGIGADRVPGALHAAEHAAIGL 661 Query 668 LPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRARTWLGATAEAIE 726 LPLVA+CDRGDIGG+STA P+ GLP+VFVYDG+PGGAGFA+RG WLGAT EAI+ Sbjct 662 LPLVATCDRGDIGGVSTALHPDTGLPTVFVYDGHPGGAGFADRGHDELVRWLGATREAID 721 Query 727 ACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 ACEC +GCPSCV SPKCGNGN PLDK GAVRVL +L ++ P Sbjct 722 ACECVAGCPSCVHSPKCGNGNHPLDKDGAVRVLAAILGAVTPSDP 766 >gi|229494797|ref|ZP_04388553.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229318293|gb|EEN84158.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=762 Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/761 (65%), Positives = 577/761 (76%), Gaps = 1/761 (0%) Query 8 LLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAA 67 LL VAG E+PL A+LP + WPEW P VV A A+ + SPW HQ+EAA Sbjct 2 LLDRVVAGVSGSEKPLMFTAQLPARVAEFTEWPEWVHPSVVRALAEHSVRSPWIHQSEAA 61 Query 68 ELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAAHALA 127 +LAYAG+HVV+ TG ASGKSLAYQL VL A+ATD A ALYLSPTKALG DQLRA +L Sbjct 62 DLAYAGKHVVVATGTASGKSLAYQLPVLTAMATDPLATALYLSPTKALGSDQLRAVLSLT 121 Query 128 AAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNLRF 187 L +AYDGD+ E+R +ARE SRWLF+NP+M H+S+LR H RWA RNL++ Sbjct 122 DFDVELRSTNASAYDGDTSQELRTWARENSRWLFTNPDMIHISLLRTHQRWAHFFRNLKY 181 Query 188 VIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLIGQPVV 247 VI+DECH YRGVFGSNVA+V+RRL R+ ARY A PT I ASATTA PGA A+ LIG Sbjct 182 VIIDECHSYRGVFGSNVALVIRRLRRIAARYGAEPTFILASATTADPGAAASRLIGAHCT 241 Query 248 EVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQTLTFVR 307 EVTEDGSP G RTVALWEP L + GE+G+PVRR AGAEAAR+MADL++EGA+TLTFVR Sbjct 242 EVTEDGSPHGPRTVALWEPPLLEALTGENGSPVRRPAGAEAARIMADLMIEGARTLTFVR 301 Query 308 SRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLATTNAL 367 SRR AELTA+ + L ++ P+L++ VASYRAGYLAEDR L ALA+G L G ATTNAL Sbjct 302 SRRGAELTAMATKRLLAEVDPDLAERVASYRAGYLAEDRRELEAALADGTLLGAATTNAL 361 Query 368 ELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHPAAL 427 ELGVDIAGLDAVV+AGFPGTVASFWQQAGRSGRRG+G+LVVLIARDDPLDTYLVHHP+A+ Sbjct 362 ELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGEGSLVVLIARDDPLDTYLVHHPSAV 421 Query 428 LDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLRRRNGR 487 LDKPVE V DP NP++LGPQLLCAA ELPL DAEV ++GA+EV L ++G +RRR Sbjct 422 LDKPVEATVTDPGNPYVLGPQLLCAAMELPLSDAEVDAFGALEVLTRLSEEGKIRRRKHG 481 Query 488 YFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQGETYV 547 +F PH ++D+RG IG Q+ IV+ +GR+LG+V G+APA HPGAV++HQGETYV Sbjct 482 WFVTADSNPHGSLDIRGGIGTQVAIVDGESGRMLGTVDAGRAPATVHPGAVHIHQGETYV 541 Query 548 VDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTVTNHVVGY 607 VD LD G+A VH E+P + T ARE T+I +T E +G +A+ LV V VT+ VVGY Sbjct 542 VDELDLDVGLALVHTENPDWTTSARETTEITITEQLEHKNYGDIAVALVQVEVTHQVVGY 601 Query 608 LRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIGL 667 LRR SGEVLD +ELDMP HTLPT AVMYT+T + L G+ R PGSLHAAEHAAIGL Sbjct 602 LRRLTSGEVLDSIELDMPAHTLPTRAVMYTVTPELLESIGVPPERFPGSLHAAEHAAIGL 661 Query 668 LPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRARTWLGATAEAIE 726 LPLVA CDRGDIGG+STA + GLP+VFVYDG+ GGAGFA+RG WL AT +AI Sbjct 662 LPLVAICDRGDIGGVSTAMHADTGLPTVFVYDGHAGGAGFADRGHSELSRWLTATRDAIL 721 Query 727 ACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELS 767 +CEC GCPSCV SPKCGNGNDPLDK GAV+VL V+ +S Sbjct 722 SCECAHGCPSCVYSPKCGNGNDPLDKDGAVKVLTAVIDTIS 762 >gi|111021326|ref|YP_704298.1| helicase [Rhodococcus jostii RHA1] gi|110820856|gb|ABG96140.1| possible helicase [Rhodococcus jostii RHA1] Length=787 Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/770 (66%), Positives = 584/770 (76%), Gaps = 6/770 (0%) Query 3 SFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 ++G LL + G P E PL AE+P + + WP WA P VV A + GI PW+H Sbjct 17 TYGRALLNRVLEGVPRDENPLTFAAEMPARTSQLSEWPAWAHPSVVRAMQENGIPRPWTH 76 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 QA AA+LA+ G +VV+ TG ASGKSLAYQL VL LATD RA ALYLSPTKALG DQLRA Sbjct 77 QATAADLAHHGTNVVVSTGTASGKSLAYQLPVLTTLATDPRATALYLSPTKALGADQLRA 136 Query 123 AHALAA-----AVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHAR 177 +L A L V P +DGD+P EVR +ARE SRWLF+NP+M H+S+LR H R Sbjct 137 VTSLIDSEVLDAGDDLRGVRPCMFDGDTPLEVRHWARENSRWLFTNPDMLHISLLRTHQR 196 Query 178 WAVLLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGAT 237 WA RNL +V++DECH YRGVFGSNVA+VL RL R+ ARY A P + ASATTA PGA Sbjct 197 WAHFFRNLAYVVIDECHSYRGVFGSNVALVLLRLRRIAARYGAEPVFVLASATTADPGAA 256 Query 238 AADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIV 297 A+ LIG P EV EDGSP G RTVALWEP L +V GE+G+PVRR AG+EAAR+MADL+V Sbjct 257 ASRLIGAPCAEVVEDGSPHGPRTVALWEPPLMREVTGENGSPVRRPAGSEAARIMADLMV 316 Query 298 EGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQ 357 EGA+TLTFVRSRR AELTA+ + L +I PELS VASYRAGYLAEDR L ALA+G Sbjct 317 EGARTLTFVRSRRGAELTAMATKRLLGEIDPELSSRVASYRAGYLAEDRRELETALADGT 376 Query 358 LRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLD 417 L G ATTNALELGVDIAGLDAVV+AGFPGTVASFWQQ GRSGRRG+G+LVVLIARDDPLD Sbjct 377 LLGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQGGRSGRRGEGSLVVLIARDDPLD 436 Query 418 TYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVD 477 TYLVHHP+ALLDKPVE V DP NP++LGPQLLCAA ELPL DAE ++GA++V L + Sbjct 437 TYLVHHPSALLDKPVEATVTDPSNPYVLGPQLLCAAMELPLSDAEAEAFGAIDVLGKLAE 496 Query 478 DGLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGA 537 GL+RRR +F G PH AVD+RG IG Q+ IV + +GR+LG+V G+APA AHPGA Sbjct 497 QGLIRRRAHGWFVTAGTNPHGAVDIRGGIGTQVAIVVSESGRMLGTVDTGRAPATAHPGA 556 Query 538 VYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVP 597 V++HQGE+YVVD LD G+A VHAEDP + T ARE T+I VT E+ FG V + LV Sbjct 557 VHIHQGESYVVDELDLDQGLALVHAEDPDWTTSARETTEITVTSVLEQKQFGDVEVALVE 616 Query 598 VTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSL 657 V VT+ V+GYLRR SGEVLD VELDMP+ TLPT AVMYT+T + LVR+G+ A R+PGSL Sbjct 617 VEVTHQVIGYLRRLPSGEVLDAVELDMPKQTLPTRAVMYTVTPELLVRAGVPAERVPGSL 676 Query 658 HAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRART 716 HAAEHAAIGLLPLVA CDRGDIGG+STA + GLP+VFVYDG+ GGAGFA+RG Sbjct 677 HAAEHAAIGLLPLVAVCDRGDIGGVSTAVHADTGLPTVFVYDGHAGGAGFADRGHAELTR 736 Query 717 WLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAEL 766 WLGAT EAIE+CEC SGCPSCV SPKCGNGNDPLDK GA+RVL VL L Sbjct 737 WLGATREAIESCECTSGCPSCVYSPKCGNGNDPLDKDGAIRVLTAVLDSL 786 >gi|226303999|ref|YP_002763957.1| ATP-dependent helicase [Rhodococcus erythropolis PR4] gi|226183114|dbj|BAH31218.1| putative ATP-dependent helicase [Rhodococcus erythropolis PR4] Length=782 Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/766 (64%), Positives = 578/766 (76%), Gaps = 1/766 (0%) Query 3 SFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 ++G LL VAG E+PL A+LP + WPEW P VV A A+ + SPW H Sbjct 17 TYGQMLLDRVVAGVSGSEKPLMFTAQLPARVAEFTEWPEWVHPSVVRALAEHSVRSPWIH 76 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 Q+EAA+LA+ G+HVV+ TG ASGKSLAYQL VL A+ATD A ALYLSPTKALG DQLRA Sbjct 77 QSEAADLAHEGKHVVVATGTASGKSLAYQLPVLTAMATDPLATALYLSPTKALGSDQLRA 136 Query 123 AHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLL 182 +L L +AYDGD+ E+R +ARE SRWLF+NP+M H+S+LR H RWA Sbjct 137 VLSLTDFDVELRSTNASAYDGDTSQELRTWARENSRWLFTNPDMIHISLLRTHQRWAHFF 196 Query 183 RNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLI 242 RNL++VI+DECH YRGVFGSNVA+V+RRL R+ ARY A PT I ASATTA PGA A+ LI Sbjct 197 RNLKYVIIDECHSYRGVFGSNVALVIRRLRRIAARYGAEPTFILASATTADPGAAASRLI 256 Query 243 GQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQT 302 G EVTEDGSP G RTVALWEP L + GE+G+PVRR AGAEAAR+MADL++EGA+T Sbjct 257 GAHCSEVTEDGSPHGPRTVALWEPPLLEALTGENGSPVRRPAGAEAARIMADLMIEGART 316 Query 303 LTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLA 362 LTFVRSRR AELTA+ + L ++ P+L++ VASYRAGYLAEDR L ALA+G L G A Sbjct 317 LTFVRSRRGAELTAMATKRLLAEVDPDLAERVASYRAGYLAEDRRELEAALADGTLLGAA 376 Query 363 TTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVH 422 TTNALELGVDIAGLDAVV+AGFPGTVASFWQQAGRSGRRG+G+LVVLIARDDPLDTYLVH Sbjct 377 TTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGEGSLVVLIARDDPLDTYLVH 436 Query 423 HPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLR 482 HP+A+LDKPVE V DP NP++LGPQLLCAA ELPL D EV ++GA+EV L ++G +R Sbjct 437 HPSAVLDKPVEATVTDPGNPYVLGPQLLCAAMELPLSDVEVDAFGALEVLTRLSEEGKIR 496 Query 483 RRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQ 542 RR +F PH ++D+RG IG Q+ IV+ +GR+LG+V G+APA HPGAV++HQ Sbjct 497 RRKHGWFVTADSNPHGSLDIRGGIGTQVAIVDGESGRMLGTVDAGRAPATVHPGAVHIHQ 556 Query 543 GETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTVTN 602 GETYVVD LD G+A VH E+P + T ARE T+I +T E +G +A+ LV V VT+ Sbjct 557 GETYVVDELDLDVGLALVHTENPDWTTSARETTEITITEQLEHKNYGDIAVALVQVEVTH 616 Query 603 HVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEH 662 VVGYLRR SGEVLD +ELDMP HTLPT AVMYT+T + L G+ R PGSLHAAEH Sbjct 617 QVVGYLRRLTSGEVLDSIELDMPAHTLPTRAVMYTVTPELLESIGVPPERFPGSLHAAEH 676 Query 663 AAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRARTWLGAT 721 AAIGLLPLVA CDRGDIGG+STA + GLP+VFVYDG+ GGAGFA+RG WL AT Sbjct 677 AAIGLLPLVAICDRGDIGGVSTAMHADTGLPTVFVYDGHAGGAGFADRGHSELSRWLTAT 736 Query 722 AEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELS 767 +AI +CEC GCPSCV SPKCGNGNDPLDK GAV+VL V+ ++ Sbjct 737 RDAILSCECAHGCPSCVYSPKCGNGNDPLDKDGAVKVLTAVIETIN 782 >gi|226363670|ref|YP_002781452.1| helicase [Rhodococcus opacus B4] gi|226242159|dbj|BAH52507.1| putative helicase [Rhodococcus opacus B4] Length=787 Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/770 (65%), Positives = 586/770 (77%), Gaps = 6/770 (0%) Query 3 SFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 ++G LL + G P E PL AE+P + + WP WA P VV A + GI+ PW+H Sbjct 17 TYGRTLLNRVLEGVPRDEDPLTFAAEMPARTSQLSEWPAWAHPSVVRAMQENGIARPWTH 76 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 QA AA+LA+ G +VV+ TG ASGKSLAYQL VL LATD RA ALYLSPTKALG DQLRA Sbjct 77 QAAAADLAHHGTNVVVSTGTASGKSLAYQLPVLTTLATDPRATALYLSPTKALGADQLRA 136 Query 123 AHALAA-----AVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHAR 177 AL A L+ P +DGD+P EVR +ARE SRWLF+NP+M H+S+LR H R Sbjct 137 VTALVDSEILDAGDDLSSACPCVFDGDTPLEVRHWARENSRWLFTNPDMLHISLLRTHQR 196 Query 178 WAVLLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGAT 237 WA RNL +V++DECH YRGVFGSNVA+VLRRL R+ ARY A P + ASATTA PGA Sbjct 197 WAHFFRNLTYVVIDECHSYRGVFGSNVALVLRRLRRIAARYGADPVFVLASATTADPGAA 256 Query 238 AADLIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIV 297 A+ LIG P E+ EDGSP G RTVALWEP L +V GE+G+PVRR AG+EAAR+MADL+V Sbjct 257 ASRLIGAPCAEIVEDGSPHGPRTVALWEPPLMREVTGENGSPVRRPAGSEAARIMADLMV 316 Query 298 EGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQ 357 EGA+TLTFVRSRR AELTA+ + L +I P+L+ VASYRAGYLAEDR L ALA+G Sbjct 317 EGARTLTFVRSRRGAELTAMATKRLLGEIDPDLASRVASYRAGYLAEDRRELETALADGT 376 Query 358 LRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLD 417 L G ATTNALELGVDIAGLDAVV+AGFPGTVASFWQQ GRSGRRG+G+LVVL+ARDDPLD Sbjct 377 LLGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQGGRSGRRGEGSLVVLVARDDPLD 436 Query 418 TYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVD 477 TYLVHHP+ALLDKPVE V DP NP++LGPQLLCAA ELPL DAE ++GA++V L + Sbjct 437 TYLVHHPSALLDKPVEATVTDPSNPYVLGPQLLCAAMELPLSDAEAEAFGALDVLAKLSE 496 Query 478 DGLLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGA 537 GL+RRR +F G PH AVD+RG IG Q+ IV + +GR+LG+V G+APA AHPGA Sbjct 497 QGLIRRRAHGWFVTAGTNPHGAVDIRGGIGTQVAIVVSESGRMLGTVDTGRAPATAHPGA 556 Query 538 VYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVP 597 V++HQGE+YVVD LD G+A VHAEDP + T ARE T+I VT E+ FG V + LV Sbjct 557 VHIHQGESYVVDELDLDQGLALVHAEDPDWTTSARETTEITVTSVLEQKQFGDVEVALVE 616 Query 598 VTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSL 657 V VT+ V+GYLRR SGE+LD VELDMP+HTLPT AVMYT+T + L+++G+ A R+PG+L Sbjct 617 VEVTHQVIGYLRRLSSGEILDAVELDMPKHTLPTRAVMYTVTPELLLQAGVPAERVPGAL 676 Query 658 HAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRART 716 HAAEHAAIGLLPLVA CDRGDIGG+STA + GLP+VFVYDG+ GGAGFA+RG Sbjct 677 HAAEHAAIGLLPLVAVCDRGDIGGVSTALHADTGLPTVFVYDGHAGGAGFADRGHAELTR 736 Query 717 WLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAEL 766 WLGAT EAI +CEC SGCPSCV SPKCGNGNDPLDK GA+RVL VL L Sbjct 737 WLGATREAIRSCECTSGCPSCVYSPKCGNGNDPLDKDGAIRVLGAVLDTL 786 >gi|343926493|ref|ZP_08765998.1| putative ATP-dependent helicase [Gordonia alkanivorans NBRC 16433] gi|343763731|dbj|GAA12924.1| putative ATP-dependent helicase [Gordonia alkanivorans NBRC 16433] Length=775 Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/764 (60%), Positives = 570/764 (75%), Gaps = 3/764 (0%) Query 2 ASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWS 61 ++FG+ LLA ++AGT P E PL H++ +P + WPEW ++DA+AD GI W+ Sbjct 4 STFGTDLLARSLAGTDPDESPLTHLSVIPSRPASFAEWPEWVPTALLDAYADNGIERVWT 63 Query 62 HQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLR 121 HQA AA+ A+ G HV I TG ASGKSL+YQ+ +L+ L + + ALYL+PTKALG DQ+R Sbjct 64 HQARAADEAFRGNHVAICTGTASGKSLSYQMPILSTLLNEKNSTALYLAPTKALGADQIR 123 Query 122 AAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVL 181 A ++ A P + P AYDGD+ E+R++AR SRW+F+NP+M H+ +L +HARW Sbjct 124 AVSSIIAGRPEFGHLQPCAYDGDTDPEIRQWARVHSRWIFTNPDMLHIGILSHHARWRQF 183 Query 182 LRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADL 241 R+LRF++VDECH+YRGVFGS+ A+V+RRLLR+ A+PTVI ASAT A P L Sbjct 184 FRHLRFIVVDECHHYRGVFGSHTALVMRRLLRIARAAGANPTVIGASATVAQPAEALGRL 243 Query 242 IGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQ 301 IG+P V VTED SPRG RTVALWEP V GE+GAPVRRSAGAE+AR++AD +VEGA+ Sbjct 244 IGEPAVAVTEDSSPRGERTVALWEPDFLPAVTGENGAPVRRSAGAESARLLADFVVEGAR 303 Query 302 TLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGL 361 TL F RSRR ELTAL AR L APEL + +YRAGYLA+DR L +A+++G+L G+ Sbjct 304 TLCFARSRRGVELTALSARNLLSQSAPELESRIGAYRAGYLADDRRKLEKAISDGELLGV 363 Query 362 ATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQG--ALVVLIARDDPLDTY 419 ATTNALELGVDI+GLDAV+++G+PGTVASFWQQAGR+GR+ + +LVVL+ARDDPLDT+ Sbjct 364 ATTNALELGVDISGLDAVIVSGYPGTVASFWQQAGRAGRQRESGDSLVVLVARDDPLDTF 423 Query 420 LVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDG 479 LVHHP +LL KPVE V DP NP++LGP LLCAA E PL D E+ +W A VAE L +G Sbjct 424 LVHHPDSLLGKPVEATVTDPANPYILGPHLLCAAAEKPLSDTEIDAWDARPVAEDLATEG 483 Query 480 LLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVY 539 LLRRR ++ A GV+PHA +D+RG IGGQ++IV+ T ++LG+V G+A + HPGAV+ Sbjct 484 LLRRRKSGWYVAAGVEPHAEIDIRGGIGGQVLIVDTTTSQVLGTVDTGRAMSTVHPGAVH 543 Query 540 LHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVT 599 +HQGETY+VD LD DG+A H EDP + T ARE TDI++T E FGP+ + V V Sbjct 544 IHQGETYLVDELDLDDGLALAHPEDPDWTTSARETTDISITSVIESREFGPLTVAFVEVD 603 Query 600 VTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHA 659 VT+ VVGYLR +GEVLD VELDMPE TL T AVMYT+T + L +GI+ TR+PGSLHA Sbjct 604 VTHQVVGYLRTLRTGEVLDAVELDMPEQTLHTRAVMYTLTPEVLAEAGIDDTRLPGSLHA 663 Query 660 AEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRARTWL 718 AEHA IGLLPLVA+CDR DIGG+ST P+ GLP+VFVYDGY GGAGFAERG TW+ Sbjct 664 AEHATIGLLPLVATCDRWDIGGVSTDLHPDTGLPTVFVYDGYMGGAGFAERGHSAFLTWI 723 Query 719 GATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLV 762 AT +A+ +C C SGCPSCVQSPKCGNGNDPLDK GAV VL L+ Sbjct 724 NATRDAVASCGCESGCPSCVQSPKCGNGNDPLDKDGAVTVLELL 767 >gi|296141550|ref|YP_003648793.1| hypothetical protein Tpau_3881 [Tsukamurella paurometabola DSM 20162] gi|296029684|gb|ADG80454.1| Protein of unknown function DUF1998 [Tsukamurella paurometabola DSM 20162] Length=795 Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/767 (62%), Positives = 567/767 (74%), Gaps = 1/767 (0%) Query 3 SFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 +FG LL AGT P L HVA++P + WP+W ++ D F + G+ PW H Sbjct 28 TFGRELLHRIQAGTGPAGDGLTHVADIPSRRAEFAQWPQWLPSNIRDGFIESGVERPWRH 87 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 Q EAAE A+AGRHVVI TG ASGKSLAYQL VL LATD RA LYLSPTKALG DQ A Sbjct 88 QIEAAEHAHAGRHVVISTGTASGKSLAYQLPVLAGLATDPRATVLYLSPTKALGTDQHAA 147 Query 123 AHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLL 182 A L + L DV+P YDGD+ E+RR+AR SRW+F+NP+M H+ +L HA+WA L Sbjct 148 ALRLTSMFDGLGDVSPAMYDGDTSQEMRRWARSDSRWVFTNPDMIHVGMLPRHAKWARFL 207 Query 183 RNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLI 242 R LR+V+VDECH+YRGVFGS+ A+VLRRLLR+ A+Y A PTVI ASATT+ P A+ LI Sbjct 208 RGLRYVVVDECHHYRGVFGSHTALVLRRLLRVAAKYGAEPTVICASATTSDPAGAASRLI 267 Query 243 GQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQT 302 G V V D SP G RTV LWEP L D+ GE+GAPVRR A EAAR+MADL+VEGA+T Sbjct 268 GSDCVAVETDSSPHGPRTVVLWEPPLIPDLEGENGAPVRRQATTEAARMMADLVVEGART 327 Query 303 LTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLA 362 L FVRSRR+AE AL R L + PEL+ VA+YRAGYLAEDR AL + L +G+L +A Sbjct 328 LAFVRSRRSAETVALSTRRMLAEATPELASRVAAYRAGYLAEDRRALERGLNDGELLAVA 387 Query 363 TTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVH 422 TTNALELGVDIAGLDAV++AGFPGTVASFWQQAGRSGRRGQG+L++LIARDDPLDTYLVH Sbjct 388 TTNALELGVDIAGLDAVLMAGFPGTVASFWQQAGRSGRRGQGSLILLIARDDPLDTYLVH 447 Query 423 HPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLR 482 HP +LL +PVE + DP NP++LGPQLLCAA ELPL EV + GAV+V L DGLLR Sbjct 448 HPESLLGRPVEATITDPWNPYVLGPQLLCAAGELPLTREEVTALGAVDVVGRLTADGLLR 507 Query 483 RRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQ 542 R YF A G+ PHA V++RG G +++IVE TGRLLG+V +A + + GAV++HQ Sbjct 508 ERPAGYFLAAGIDPHARVNIRGGAGSEVLIVEELTGRLLGTVDFNRALSTVYEGAVHVHQ 567 Query 543 GETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTVTN 602 GE+YVVD LD +G+A VHAE+P + T ARE +D+ VTG + G V V V VT+ Sbjct 568 GESYVVDELDLDEGLAMVHAEEPEWTTSAREDSDVRVTGVHQTEELGAVTARFVSVEVTS 627 Query 603 HVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEH 662 VVGYLR +GEVLD VELD+PE +L T A + TI DAL+ +G+ PG+LHAAEH Sbjct 628 QVVGYLRTLRTGEVLDAVELDLPETSLATQAALITIEPDALLAAGLAPEHWPGALHAAEH 687 Query 663 AAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRARTWLGAT 721 AAIGLLPLVASCDR DIGG+STA + GLPS+FVYDGYPGGAGFAERG+ TWL AT Sbjct 688 AAIGLLPLVASCDRWDIGGLSTAQHEDTGLPSIFVYDGYPGGAGFAERGYEAIATWLLAT 747 Query 722 AEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSE 768 +A+ ACECP+GCPSCVQSPKCGNGNDPLDKAGA+ VL LVLA L++ Sbjct 748 RDAVAACECPAGCPSCVQSPKCGNGNDPLDKAGAIVVLDLVLAALAQ 794 >gi|262200586|ref|YP_003271794.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247] gi|262083933|gb|ACY19901.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM 43247] Length=775 Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/764 (60%), Positives = 571/764 (75%), Gaps = 3/764 (0%) Query 2 ASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWS 61 +++G+ LL ++AG+ P+ H+ +P WPEW P ++DAF GI PW+ Sbjct 4 STYGTELLRRSLAGSDSESSPITHIEVIPSAPPSFDDWPEWLPPALIDAFGADGIQRPWT 63 Query 62 HQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLR 121 HQ AA A G HVVI TG ASGKSLAYQ+ +L L TD + ALYLSPTKALG DQ+R Sbjct 64 HQVSAACAARRGEHVVICTGTASGKSLAYQMPILTELLTDPHSTALYLSPTKALGADQIR 123 Query 122 AAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVL 181 + AL A + + P AYDGD+ E+R++AR SRW+F+NP+M H+ +L HARW Sbjct 124 SVSALIAGREEYSHLQPCAYDGDTDPEIRQWARAHSRWIFTNPDMLHIGILSGHARWRQF 183 Query 182 LRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADL 241 R+LR++++DECH+YRGVFG++ ++V+RRLLR+ A TVI ASAT A P + + L Sbjct 184 FRHLRYIVIDECHHYRGVFGAHTSLVMRRLLRIARAAGAEVTVIAASATVADPAESLSRL 243 Query 242 IGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQ 301 IG+P V VT+DGSPRG RTVALWEP V GE+GAPVRRSAG+E+AR++AD +VEGA+ Sbjct 244 IGEPAVAVTQDGSPRGERTVALWEPDFLPAVTGENGAPVRRSAGSESARLLADFVVEGAR 303 Query 302 TLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGL 361 TL F RSRR ELTALGA L + AP+L D VA+YRAGYLAEDR L QA+ +G L G+ Sbjct 304 TLCFARSRRGVELTALGAARLLAESAPQLVDRVAAYRAGYLAEDRRRLEQAINDGSLVGV 363 Query 362 ATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQG--ALVVLIARDDPLDTY 419 ATTNALELGVDI+GLDAV+++G+PGTVASFWQQAGR+GR+ + +LVVL+ARDDPLDTY Sbjct 364 ATTNALELGVDISGLDAVIVSGYPGTVASFWQQAGRAGRQRESGDSLVVLVARDDPLDTY 423 Query 420 LVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDG 479 LVHHPAALL KPVE V DP NP++LGP LLCAA E+PL D E+ +WGA EVA L DG Sbjct 424 LVHHPAALLGKPVEATVFDPGNPYVLGPHLLCAAAEIPLSDKEIDAWGASEVAAELAADG 483 Query 480 LLRRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVY 539 LLRRR ++ PGV+PHA +D+RG IGGQ++IV+ T +LLG+V G+AP HPGAV+ Sbjct 484 LLRRRKAGWYVTPGVEPHADIDIRGGIGGQVLIVDTTTSQLLGTVDSGRAPGTVHPGAVH 543 Query 540 LHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVT 599 +HQG TY++D LD DG+A H E+P + T AR++TD+++ E V+GP+ + LV V Sbjct 544 IHQGRTYLIDELDLDDGLALAHPEEPDWTTSARDITDVSIIRVIESEVYGPLTVALVEVD 603 Query 600 VTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHA 659 VT+ VVGYLR SGEVLD VELDMP TL T AVMYT+T ++L +GI+ATR+PGSLHA Sbjct 604 VTHQVVGYLRTLYSGEVLDAVELDMPRQTLHTRAVMYTLTPESLESAGIDATRLPGSLHA 663 Query 660 AEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRARTWL 718 AEHAAIGLLPLVA+CDR DIGG+ST P+ GLP+VFVYDGY GGAGFA+RG+ TW+ Sbjct 664 AEHAAIGLLPLVATCDRADIGGLSTDLHPDTGLPTVFVYDGYLGGAGFADRGYGAFATWI 723 Query 719 GATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLV 762 AT A+ CEC SGCPSCVQSPKCGNGN+PLDK+GAV VL L+ Sbjct 724 EATRAAVAGCECDSGCPSCVQSPKCGNGNEPLDKSGAVAVLELL 767 >gi|326383467|ref|ZP_08205154.1| DEAD/DEAH box helicase domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197873|gb|EGD55060.1| DEAD/DEAH box helicase domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length=770 Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/761 (59%), Positives = 562/761 (74%), Gaps = 1/761 (0%) Query 3 SFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 S+G LL +AGT PL H+ + ++ WP+W P V DAF +RG+ PW H Sbjct 5 SYGGELLTRTLAGTSDDPGPLTHMTVIGSRSAEVTEWPDWVHPAVRDAFVERGVRRPWRH 64 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 Q EAA LA + RHV + TG ASGKSLAYQL VL A D + ALYLSPTKALG DQLR+ Sbjct 65 QTEAASLAASSRHVCVCTGTASGKSLAYQLPVLTTFADDHNSTALYLSPTKALGTDQLRS 124 Query 123 AHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLL 182 L A P A + P +YDGD+ E+R++AR SRW+F+NP+M + + H RW Sbjct 125 VAQLIAGRPEFAHLQPCSYDGDTDSELRQWARMHSRWIFTNPDMLQIGITSTHPRWRAFF 184 Query 183 RNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLI 242 LR+++VDECH+YRGVFGS+ A+VL+R LR+ +Y A P VI ASAT ++P + LI Sbjct 185 AKLRYIVVDECHHYRGVFGSHTALVLQRTLRIARKYGADPVVIGASATVSNPAQALSRLI 244 Query 243 GQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQT 302 G+ VV VTED SP G RTVA+WEP +V GE+ APVRRSAG+EAAR++AD ++EGA+T Sbjct 245 GEDVVAVTEDASPHGERTVAMWEPGFLDEVTGENDAPVRRSAGSEAARLLADFVIEGART 304 Query 303 LTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLA 362 L FVRSRR E+TA+ AR L D AP+L D VA+YRAGYLA+DR L QA+++G+L G+A Sbjct 305 LCFVRSRRGVEVTAVRARQILADAAPDLVDRVAAYRAGYLADDRRRLEQAISDGELLGVA 364 Query 363 TTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVH 422 TTNALELGVDI+GLDAVV+AG+PGTVASFWQQAGR+GRRG+G++VV+IARDDPLDTYLVH Sbjct 365 TTNALELGVDISGLDAVVVAGYPGTVASFWQQAGRAGRRGEGSIVVMIARDDPLDTYLVH 424 Query 423 HPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLR 482 HP ALL++ VE V DP NP +LGP +LCAATE PL + EV ++ A EV L G L+ Sbjct 425 HPEALLERAVEATVTDPTNPFVLGPHMLCAATEFPLTEEEVAAFSAGEVVAELTAAGKLK 484 Query 483 RRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQ 542 RR ++ APG+ PH +D+RG IGGQ++IV+A T RLLG+V +A + +PGAVYLHQ Sbjct 485 RRKAGWYAAPGLDPHGDIDIRGGIGGQVLIVDATTSRLLGTVDTARAMTSVYPGAVYLHQ 544 Query 543 GETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTVTN 602 GE++VVD LD DG+A H E+P + T AREV+D+ + T +R FGP+ + V V VTN Sbjct 545 GESFVVDELDLDDGLALTHPEEPDWTTSAREVSDVTIIETHDRRTFGPLTVASVSVEVTN 604 Query 603 HVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEH 662 VVGYLR+ LSGE+LD V LD+PEHTL T AVMYT+T +A++ +GI + PG+LHAAEH Sbjct 605 QVVGYLRKALSGEILDSVPLDLPEHTLTTRAVMYTLTQEAMIDAGIALDKFPGALHAAEH 664 Query 663 AAIGLLPLVASCDRGDIGGMSTATGP-EGLPSVFVYDGYPGGAGFAERGFRRARTWLGAT 721 AAIG+L LVA+CDR DIGG+STA P GLP+VFVYDG+PGGAGFA+RG+ W+ AT Sbjct 665 AAIGMLGLVATCDRWDIGGLSTAMHPGTGLPTVFVYDGFPGGAGFADRGYEAFTDWISAT 724 Query 722 AEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLV 762 EA+ +C C SGCPSCVQSPKCGNGN+PLDK A+++LRL+ Sbjct 725 DEAVSSCGCTSGCPSCVQSPKCGNGNEPLDKEHAIKLLRLI 765 >gi|54022329|ref|YP_116571.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] gi|54013837|dbj|BAD55207.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] Length=796 Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/774 (62%), Positives = 560/774 (73%), Gaps = 11/774 (1%) Query 4 FGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQ 63 +G LL G P +R L H +LP + WP W PDV+ A GI +PW+HQ Sbjct 13 YGRSLLNRVQRGGP--DRRLTHAVDLPARPAETTEWPAWVHPDVIAALDTYGIGAPWTHQ 70 Query 64 AEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAA 123 AELA G+HVV+ TG ASGKSL YQL VL AL D RA ALYL+PTKALG DQLRA Sbjct 71 TRTAELAAGGQHVVVSTGTASGKSLGYQLPVLTALREDPRATALYLAPTKALGADQLRAL 130 Query 124 HALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLR 183 L P L +V P YDGD+P E+R++ R+ +RW+F+NP+M H+ +LR+H RWA + R Sbjct 131 GELTHEGP-LREVHPATYDGDTPAEIRQWVRDNARWIFTNPDMLHVGMLRSHQRWARVFR 189 Query 184 NLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLIG 243 LR+V+VDECH YRGVFGS+VA+VLRRL R+ A Y A P + SATTA P A A+ LIG Sbjct 190 RLRYVVVDECHAYRGVFGSHVALVLRRLRRVAAHYGADPVFVLCSATTADPAAAASRLIG 249 Query 244 QPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQTL 303 P V VTEDGSPRGARTVALWEP L + GE+GAPVRRSA EAAR+MADL+VEGA+TL Sbjct 250 APCVAVTEDGSPRGARTVALWEPPLTA-ATGENGAPVRRSATIEAARIMADLVVEGARTL 308 Query 304 TFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLAT 363 TFVRSRR+AEL A AR L ++ P L++ VA+YRAGYLAEDR L AL++G+L G AT Sbjct 309 TFVRSRRSAELAAREARGLLGEVDPRLAERVAAYRAGYLAEDRRELEAALSDGRLLGAAT 368 Query 364 TNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHH 423 TNALELGVDIAGLDAVV++GFPGTVASFWQQAGR+GRR QG+LV+L+A DDPLDTYLVHH Sbjct 369 TNALELGVDIAGLDAVVISGFPGTVASFWQQAGRAGRRSQGSLVLLVATDDPLDTYLVHH 428 Query 424 PAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLRR 483 P ALLDKPVE + DP NP++LGPQLLCAA ELPL DAE GA V L G +RR Sbjct 429 PDALLDKPVEATITDPTNPYVLGPQLLCAAAELPLTDAEAEELGATRVLADLAAQGRIRR 488 Query 484 R------NGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGA 537 R GR+ PH VDVRG IG + IV+ TGRLLG+ G+APA HPGA Sbjct 489 RVAPRTGAGRWHITAHTHPHDDVDVRGGIGAPVAIVDGETGRLLGTADAGRAPATLHPGA 548 Query 538 VYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVP 597 V+LHQGET+VVD LD DG+AFVHA DPG+ T AR++T + V G V Sbjct 549 VHLHQGETFVVDELDLTDGVAFVHAGDPGWTTSARKLTSLTVESVLAERHHGGVTSAFAQ 608 Query 598 VTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSL 657 V VT+ V+GYLR +GEV+D VELD+P TLPT AV YT+T D L +GI+A RIPG+L Sbjct 609 VCVTSQVIGYLRTLPTGEVMDLVELDLPAQTLPTKAVFYTVTPDLLAEAGIDARRIPGAL 668 Query 658 HAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRART 716 HAAEHAAIGLLPLVA+CDR DIGG+STA P+ GLP+VFVYDG PGGAGFAERGF + R Sbjct 669 HAAEHAAIGLLPLVATCDRWDIGGVSTAEHPDTGLPTVFVYDGQPGGAGFAERGFAQLRR 728 Query 717 WLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEES 770 WL AT AIE+C C +GCPSCVQSPKCGNGN+PLDK GA R+LR VL L S Sbjct 729 WLAATLAAIESCRCATGCPSCVQSPKCGNGNNPLDKDGAARLLRAVLGALDRTS 782 >gi|319948999|ref|ZP_08023099.1| hypothetical protein ES5_06352 [Dietzia cinnamea P4] gi|319437340|gb|EFV92360.1| hypothetical protein ES5_06352 [Dietzia cinnamea P4] Length=777 Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/773 (59%), Positives = 550/773 (72%), Gaps = 6/773 (0%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 M ++G LL + P G PL H A+LP + R WP WA P +VD RG+ PW Sbjct 1 MTTYGRELLGHLLDQLPAGPSPLTHAADLPAREARYADWPTWAHPGLVDELRARGVDRPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 +HQ AE A+AGRHVV+ TG ASGKSL YQL L+ALA D A LYL+PTKALG DQL Sbjct 61 AHQVATAEHAHAGRHVVVATGTASGKSLGYQLPALSALAEDPNACVLYLAPTKALGQDQL 120 Query 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 + +L +VP L+ VAP +YDGD+P + R F RE SRW+ +NP+M HLS+L +W Sbjct 121 SSVISLVDSVPGLSHVAPASYDGDTPSDARPFIRENSRWIVTNPDMLHLSMLGRARQWTR 180 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 +LR LRFV+VDECH YRGVFGSNVA+VLRRL RL A PT + ASATT+ GA A Sbjct 181 ILRGLRFVVVDECHSYRGVFGSNVALVLRRLDRLARALGAAPTFVLASATTSDAGAAATT 240 Query 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 L+G+ VEVT+D SP+G RTVALWEP L V GEHGAPVRR A EA+ +MA L+ EGA Sbjct 241 LVGRECVEVTDDASPQGGRTVALWEPPLMEGVAGEHGAPVRRPAPVEASALMASLVAEGA 300 Query 301 QTLTFVRSRRAAELTALGARARLVD----IAPELSDTVASYRAGYLAEDRSALHQALAEG 356 +TLTFVRSR AE TAL AR RL EL+ VA+YRAGYLA+DR L + LAEG Sbjct 301 RTLTFVRSRAGAESTALRARERLASEYGARGIELAGRVAAYRAGYLADDRRELERGLAEG 360 Query 357 QLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPL 416 +L G+A+T+ALELGVDI+GLDAVV AGFPGT+ASFWQQAGR+GRRGQGALV+L+ARDDPL Sbjct 361 ELVGVASTSALELGVDISGLDAVVSAGFPGTIASFWQQAGRAGRRGQGALVMLVARDDPL 420 Query 417 DTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLV 476 DTYLVHHP ALL +PVE V DP NP LL QL CA +E P+ E R+WGA EV E L Sbjct 421 DTYLVHHPEALLGRPVEATVTDPRNPVLLAGQLRCAVSERPMSHEEARAWGATEVLEDLA 480 Query 477 DDGLLRRRNGRYFPAPGV-KPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHP 535 GL+RRR ++PA PHA VD+RG G ++VIV+A GR+LG++ +A + HP Sbjct 481 ARGLVRRRPAGWYPAADDHTPHAEVDIRGTGGAEVVIVDAVDGRMLGTIDSVRARSQVHP 540 Query 536 GAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGL 595 GA+YLHQGE+++VD LD +G+A H E P + T ARE I + T E + GPV L L Sbjct 541 GALYLHQGESFIVDELDLDEGLALCHPEVPEWTTSAREQVSIDLISTLETVPAGPVTLSL 600 Query 596 VPVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPG 655 V VT V GY RR GE+LD LD+PE TL T AV+YT+T L +G+E PG Sbjct 601 ADVEVTTRVTGYQRRLRGGEILDVPPLDLPETTLATRAVVYTLTPQLLRVAGLEEADWPG 660 Query 656 SLHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRA 714 +LHAAEHAAIGLLPLVA+CDR DIGG+STA P+ GLP+VFVYDGY GGAGFAERGFRRA Sbjct 661 ALHAAEHAAIGLLPLVATCDRWDIGGVSTALHPDTGLPTVFVYDGYAGGAGFAERGFRRA 720 Query 715 RTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELS 767 +WL AT +AI ACEC SGCPSC+QSPKCGNGNDPL K GA+ +L V+ +L+ Sbjct 721 TSWLRATLDAIRACECESGCPSCIQSPKCGNGNDPLSKPGAIALLTEVVGQLA 773 >gi|331694284|ref|YP_004330523.1| helicase/secretion neighborhood putative DEAH-box helicase [Pseudonocardia dioxanivorans CB1190] gi|326948973|gb|AEA22670.1| helicase/secretion neighborhood putative DEAH-box helicase [Pseudonocardia dioxanivorans CB1190] Length=783 Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/770 (61%), Positives = 552/770 (72%), Gaps = 13/770 (1%) Query 5 GSHLLAAAVAGTPPGE--RPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 G LLA +AG+ G+ PLRH +LP + GRP WP W VVDA GI PW+H Sbjct 17 GDRLLARVLAGSDVGDVVSPLRHSVQLPARPGRPAAWPGWVPAVVVDALRAHGIDRPWTH 76 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 Q E AELA+AGR VV+ TG ASGKSL YQL VL D RA ALYLSPTKAL DQLRA Sbjct 77 QVEGAELAHAGRDVVVATGTASGKSLVYQLPVLTRFVADRRATALYLSPTKALAADQLRA 136 Query 123 AHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLL 182 AL + DV T DGD+P E R +AR +RW++SNP+M H S+L HA WA L Sbjct 137 LEAL-----DVPDVRATTVDGDTPAEERDWARRNARWIYSNPDMLHRSILPRHASWATFL 191 Query 183 RNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLI 242 R L +V+VDECH YRGVFGS+VA++LRRLLR+ ARY A PT++ ASAT A PG A L Sbjct 192 RRLSYVVVDECHTYRGVFGSHVALLLRRLLRVAARYGARPTIVLASATVADPGPFATVLT 251 Query 243 GQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQT 302 G+ V VT+DGSPR ARTVALWEP L ++ GE+ APVRR+AG EAAR++ADL+VEGA+T Sbjct 252 GRDVAAVTDDGSPRSARTVALWEPPLLPELSGENAAPVRRAAGTEAARMLADLVVEGART 311 Query 303 LTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLA 362 L FVRSRR AELTA+GAR L + APEL V SYR+GYL E+R L ALA G+L G+A Sbjct 312 LAFVRSRRGAELTAMGARRLLAEAAPELVGRVESYRSGYLPEERRELEAALAGGRLLGVA 371 Query 363 TTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVH 422 +TNALELG+DIAGLDAVV+AGFPGT ASFWQQAGR+GR + ALVVL+ARDDP+DTYLVH Sbjct 372 STNALELGMDIAGLDAVVVAGFPGTRASFWQQAGRAGRAAEEALVVLVARDDPMDTYLVH 431 Query 423 HPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAE----SLVDD 478 HP ALL PVER V+DP NP++L P L CAA ELPL A++ A AE +LVDD Sbjct 432 HPDALLGAPVERCVLDPANPYVLAPHLACAAAELPLTAADLDGVFAGTPAEAVLDALVDD 491 Query 479 GLLRRR-NGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGA 537 G+LRRR G ++P+ P ++VD+RG+ GQI +VEAGTGR+LG+V G APA AHPGA Sbjct 492 GVLRRRPTGWFWPSASEWPASSVDIRGSGLGQIALVEAGTGRMLGTVDAGSAPATAHPGA 551 Query 538 VYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVP 597 VYLH+GE+YVVDSLD G+A VH ++P + T AR D+ + R GPV + Sbjct 552 VYLHRGESYVVDSLDLDAGLALVHPDNPDWRTDARSTADVEIVAELCRSEHGPVGVSYGE 611 Query 598 VTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSL 657 VT VVGY RR L G VL+ V LDMPE TL T AV YTI AL +GI RIPG+L Sbjct 612 TRVTTQVVGYQRRALDGRVLETVPLDMPEQTLDTRAVWYTIDDAALADAGIVPARIPGAL 671 Query 658 HAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRART 716 HAAEHAAIGLLPL A CDR DIGGMSTA P+ GLP+VFV+DG+PGGAG AERG + Sbjct 672 HAAEHAAIGLLPLFAICDRWDIGGMSTALHPQTGLPTVFVHDGHPGGAGLAERGHGVMQR 731 Query 717 WLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAEL 766 WL AT AI CEC +GCPSCVQSPKCGNGN+PLDKAGAV VL LVL L Sbjct 732 WLAATRAAIAECECRTGCPSCVQSPKCGNGNNPLDKAGAVVVLDLVLGAL 781 >gi|325002267|ref|ZP_08123379.1| helicase family protein with metal-binding cysteine cluster [Pseudonocardia sp. P1] Length=825 Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/758 (61%), Positives = 553/758 (73%), Gaps = 14/758 (1%) Query 18 PGERPLRHVAELPPQAGRPRGWPEWAEPDVV-DAFADRGISSPWSHQAEAAELAYAGRHV 76 PG+ PLRHV +PP+ GR GWP+W PDV+ +A RG+ PW+HQAE AEL AG V Sbjct 70 PGD-PLRHVVRIPPRPGRSTGWPDWT-PDVLRSGWAGRGVDRPWAHQAEGAELVRAGADV 127 Query 77 VIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAAHALAAAVPRLADV 136 V+ TG ASGKSL YQL VL L D RA ALYL+PTKAL DQLRA +A + Sbjct 128 VVATGTASGKSLVYQLPVLTRLVEDPRATALYLAPTKALAADQLRALDDIAPD-----GI 182 Query 137 APTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNLRFVIVDECHYY 196 P ++DGD+P E R + R RW+FSNP+M H S+L H RW+ LR L FV+VDECH Y Sbjct 183 RPASFDGDTPMEERDWIRRHCRWMFSNPDMVHRSLLPRHGRWSTFLRRLEFVVVDECHTY 242 Query 197 RGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLIGQPVVEVTEDGSPR 256 RGVFGS+VA++LRRLLR+ ARY AHPTV+ ASAT A P A+ L G+ VV VTEDGSP Sbjct 243 RGVFGSHVALLLRRLLRVAARYGAHPTVVLASATVARPAEFASRLTGRDVVAVTEDGSPH 302 Query 257 GARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQTLTFVRSRRAAELTA 316 RTVA WEP L +++ G++GAPVRRSAG EAAR++ADL++E A+TL FVRSRRAAELTA Sbjct 303 AGRTVAFWEPPLLAEITGDNGAPVRRSAGGEAARMLADLVLEDARTLAFVRSRRAAELTA 362 Query 317 LGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLATTNALELGVDIAGL 376 LGAR ++ D+APEL D VA+YR GYL E+R AL AL G+L G+ATTNALELGVDI+GL Sbjct 363 LGARRQVADVAPELGDRVAAYRGGYLPEERRALEAALMTGELLGVATTNALELGVDISGL 422 Query 377 DAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHPAALLDKPVERVV 436 DAVV+AGFPGT ASFWQQAGR+GR ALVVL+ARDDPLDTYLVHHP L+ PVE V Sbjct 423 DAVVVAGFPGTRASFWQQAGRAGRAADEALVVLVARDDPLDTYLVHHPQTLIGAPVESCV 482 Query 437 IDPVNPHLLGPQLLCAATELPL--DDAEVRSWG--AVEVAESLVDDGLLRRR-NGRYFPA 491 ++PVNP++L PQL CAA ELPL DD + G AVEV ++LV++G+LRRR +G ++P Sbjct 483 LNPVNPYVLAPQLACAAAELPLTTDDVDGIFGGAPAVEVLDALVEEGVLRRRPHGWFWPD 542 Query 492 PGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQGETYVVDSL 551 G P A VD+RG+ GQ+ IVEA TGR+LG+V G AP HPGAV+LH+GE+YVVD L Sbjct 543 TGDAPAAQVDIRGSGLGQVAIVEAATGRMLGTVDGGSAPGTVHPGAVHLHRGESYVVDEL 602 Query 552 DFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTVTNHVVGYLRRQ 611 D G+A VH E+P + T A+ V+D+ V E +GPV + TVT+ VVGY RR Sbjct 603 DLDGGVALVHPEEPDWRTEAQSVSDVTVLEVLESRRYGPVGVCFGATTVTSQVVGYRRRT 662 Query 612 LSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIGLLPLV 671 G VLD LD+P +L T +V YTI DAL +GI+ R+PG+LHAAEHAAIGLLPL Sbjct 663 PDGTVLDQTPLDLPAQSLDTRSVWYTIEPDALADAGIDEARLPGALHAAEHAAIGLLPLF 722 Query 672 ASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRARTWLGATAEAIEACEC 730 A CDR DIGG+STA P+ GLP+VFV+DG+PGGAG AERG WL AT A+ CEC Sbjct 723 AICDRWDIGGLSTALHPDTGLPTVFVHDGHPGGAGLAERGHAVLARWLTATRSAVRDCEC 782 Query 731 PSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSE 768 +GCPSCVQSPKCGNGN+PLDK GAV+VL LVL L E Sbjct 783 RTGCPSCVQSPKCGNGNNPLDKTGAVQVLDLVLEALGE 820 >gi|333917963|ref|YP_004491544.1| putative ATP-dependent helicase [Amycolicicoccus subflavus DQS3-9A1] gi|333480184|gb|AEF38744.1| Putative ATP-dependent helicase [Amycolicicoccus subflavus DQS3-9A1] Length=816 Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/765 (57%), Positives = 535/765 (70%), Gaps = 12/765 (1%) Query 8 LLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAA 67 L A+A+ G+P +P ++ WPEW + D G+ P+SHQ AA Sbjct 42 LSASAIGGSPA------FTTVIPARSAEYVAWPEWVYEPLRDELVFSGVVQPYSHQIRAA 95 Query 68 ELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAAHALA 127 +LA+ G +VV+ TG ASGKSLAYQL +L ALA A ALYLSPTKALG DQL+ A L Sbjct 96 DLAHRGTNVVVATGTASGKSLAYQLPILTALAESPSATALYLSPTKALGADQLKNASRLT 155 Query 128 AAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNLRF 187 AV L+ P YDGD+P ++R + R +RW+ +NP+M H+ +L H RW+ R L++ Sbjct 156 NAVAGLSTAHPYLYDGDTPTDIRPWIRNHARWVCTNPDMLHIGILPGHERWSRFFRGLKY 215 Query 188 VIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLIGQPVV 247 V++DECH+YRGVFGS VA V+RRL R+ RY A PT I ASAT+A+PGA A LIG Sbjct 216 VVIDECHHYRGVFGSGVAWVIRRLRRIAKRYGATPTFILASATSANPGAAATRLIGARCA 275 Query 248 EVTEDGSPRGARTVALWEPAL--RSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQTLTF 305 EVTEDGSP G+RTVALWEP SD + E RRSA EAA + A LI EGA+TLTF Sbjct 276 EVTEDGSPHGSRTVALWEPGYLPDSDDLPER---TRRSATTEAAGLTAALIREGARTLTF 332 Query 306 VRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLATTN 365 VRSR AE A+ R L + +L++ V +YRAGYLAEDR + LAEG L G+ TTN Sbjct 333 VRSRAGAEFAAVTVRRILEESGTDLANRVTAYRAGYLAEDRRRIEAELAEGALLGVTTTN 392 Query 366 ALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHPA 425 ALELGVDIAGLDAVV+AGFPGT ASFWQQAGR+GRRGQGA+V+L+ARDDPLD+YLVH+P Sbjct 393 ALELGVDIAGLDAVVIAGFPGTRASFWQQAGRAGRRGQGAVVILVARDDPLDSYLVHNPE 452 Query 426 ALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLRRRN 485 +LL KPVE V DP NP++ P LLCAA+E PL D E LV +GLLRRR Sbjct 453 SLLGKPVEATVTDPDNPYVQRPHLLCAASEHPLSDEEADRADVSATLGELVSEGLLRRRP 512 Query 486 GRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQGET 545 +F APG+ PH V +RG GQI I E+ TG LLG+V G+AP+ HPGAV+LHQG+T Sbjct 513 HGWFIAPGLNPHEEVSIRGGTAGQIAIAESTTGELLGTVDAGRAPSTVHPGAVHLHQGDT 572 Query 546 YVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTVTNHVV 605 YVV+ L+ Q+G+A V +DPG++T +R V+DI +TG R V+G + LGL V VT+ VV Sbjct 573 YVVEELELQEGLALVRRDDPGWSTTSRSVSDIRITGIRTRAVYGDITLGLADVEVTSQVV 632 Query 606 GYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAI 665 YLRR SGE+LD VELDMP TL T AVM+TI+ + L + +PGSLHAAEHAAI Sbjct 633 SYLRRLPSGEILDTVELDMPPSTLHTVAVMWTISPERLDAEMVSEPDMPGSLHAAEHAAI 692 Query 666 GLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRARTWLGATAEA 724 GLLPLVA+ DRGDIGG+STA + GLP++F+YDG+PGGAG AERG R WL AT + Sbjct 693 GLLPLVATADRGDIGGVSTALHADTGLPTIFIYDGHPGGAGIAERGHSAIRQWLTATVDV 752 Query 725 IEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEE 769 IE C C +GCP+CVQSPKCGNGNDPLDKAGAVRVLR VL +L EE Sbjct 753 IERCSCSTGCPACVQSPKCGNGNDPLDKAGAVRVLRTVLTDLPEE 797 >gi|257057534|ref|YP_003135366.1| helicase family protein with metal-binding cysteine cluster [Saccharomonospora viridis DSM 43017] gi|256587406|gb|ACU98539.1| helicase family protein with metal-binding cysteine cluster [Saccharomonospora viridis DSM 43017] Length=798 Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/767 (59%), Positives = 538/767 (71%), Gaps = 16/767 (2%) Query 8 LLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAA 67 LL AG P P+ HVA LP R WPEW V D + GI PW+HQAEAA Sbjct 12 LLHRTTAGIPEDLSPVTHVANLPAAEPRHTEWPEWVPDRVRDVLRNSGIDRPWAHQAEAA 71 Query 68 ELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAAHALA 127 LA+ +VV+ TG ASGKSL YQL L+ L TD +A LYLSPTKAL DQLRA + Sbjct 72 SLAWDRHNVVVATGTASGKSLTYQLPALSTLVTDGKATVLYLSPTKALATDQLRAVSDM- 130 Query 128 AAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNLRF 187 + V P YDGD+P R + R+ +RW+F+NP+M H VL H RWA R L + Sbjct 131 ----DIEGVRPATYDGDTPRGERPWVRDHARWVFTNPDMLHRGVLPAHPRWARFFRGLTY 186 Query 188 VIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLIGQPVV 247 V+VDECH YRGVFGS+VA++LRRL R+ Y A PT I SATTA P A LIGQ V Sbjct 187 VVVDECHAYRGVFGSHVALLLRRLRRIARHYGAEPTFILTSATTAEPAEFATRLIGQDCV 246 Query 248 EVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQTLTFVR 307 VTED SPRGARTVALWEP L ++ GE+ APVRRSAGAEAAR++A+L++EGA+TL FVR Sbjct 247 AVTEDTSPRGARTVALWEPPLLPELTGENDAPVRRSAGAEAARILAELVIEGARTLAFVR 306 Query 308 SRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLATTNAL 367 SRR AELTALGAR L ++APEL D VA+YRAGYL E+R L AL EG+L G+ATTNAL Sbjct 307 SRRGAELTALGARRILAEVAPELVDKVAAYRAGYLPEERRELESALLEGRLLGVATTNAL 366 Query 368 ELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHPAAL 427 ELGVDI+GLDAVVLAG+PGT+ASFWQQ+GR+GR G ALVV +ARDDPLDTYL HHP AL Sbjct 367 ELGVDISGLDAVVLAGYPGTLASFWQQSGRAGRAGADALVVFVARDDPLDTYLAHHPEAL 426 Query 428 LDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVE---VAESLVDDGLLRRR 484 L++PVE V+DP NP++L P L CAA E L ++ +GA E V + LV + +LRRR Sbjct 427 LERPVESAVLDPTNPYVLAPHLACAAAESALKSTDLDLFGATEARAVLDDLVAEKVLRRR 486 Query 485 NGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQGE 544 ++ +PH VD+RG+ Q+ +VEA T RLLG+V A + HPGAVYLH+GE Sbjct 487 PSGWYWTAREQPHHEVDIRGSGAEQVAVVEADTSRLLGTVDAVSACSTVHPGAVYLHRGE 546 Query 545 TYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTVTNHV 604 YVVD LD + G+AFVHAEDP + T AR+V DI + +R V V + L V VT+ V Sbjct 547 PYVVDELDLEHGVAFVHAEDPEWNTSARDVVDIEILDVVKRHVHDGVTVNLGHVAVTSRV 606 Query 605 VGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALV-------RSGIEATRIPGSL 657 VGYLRR SGEVLD + LD+PE L T AV YTI+ + L +G+E R+PG+L Sbjct 607 VGYLRRLPSGEVLDHIPLDLPEQVLHTRAVWYTISEELLCGPRRRPGITGVEPARVPGAL 666 Query 658 HAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRART 716 HAAEHAAIGLLPL A+CDR DIGG+STA + G +VFV+DG+PGGAGFA+RGF Sbjct 667 HAAEHAAIGLLPLFATCDRWDIGGVSTAVHADTGEATVFVHDGHPGGAGFADRGFAAFVP 726 Query 717 WLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVL 763 WL AT EA+ +CECP+GCPSCVQSPKCGNGN+PLDKAGAV VL +VL Sbjct 727 WLTATREAVLSCECPAGCPSCVQSPKCGNGNEPLDKAGAVAVLDIVL 773 >gi|134096986|ref|YP_001102647.1| DEAD/DEAH box helicase-like [Saccharopolyspora erythraea NRRL 2338] gi|291006268|ref|ZP_06564241.1| DEAD/DEAH box helicase-like protein [Saccharopolyspora erythraea NRRL 2338] gi|133909609|emb|CAL99721.1| DEAD/DEAH box helicase-like [Saccharopolyspora erythraea NRRL 2338] Length=790 Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/768 (57%), Positives = 537/768 (70%), Gaps = 15/768 (1%) Query 5 GSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQA 64 G HLL +AG P E PLRHV LP ++ R WP W +VVDA+A RG+ PW HQ Sbjct 9 GRHLLDRVLAGVPSAESPLRHVKHLPERSARTAEWPSWVPAEVVDAYAARGVREPWVHQV 68 Query 65 EAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAAH 124 E A+ +G+HVV+ TG ASGKS+ YQL VL+ L D A ALYLSPTKALG DQLRA Sbjct 69 EGADAVRSGQHVVVATGTASGKSMVYQLPVLSRLLEDRTATALYLSPTKALGADQLRAVE 128 Query 125 ALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRN 184 L L + YDGD+P R + R RW+F+NP+M HL VL H+RWA R+ Sbjct 129 ELG-----LGGIRAAGYDGDTPKVDRDWVRAYGRWVFTNPDMLHLGVLPAHSRWARFFRS 183 Query 185 LRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLIGQ 244 LR+V+VDECH YRGVFGS+VA++LRRL R+ Y A P + ASAT + PG L G Sbjct 184 LRYVVVDECHTYRGVFGSHVALLLRRLRRIAHHYGADPVFVLASATVSDPGDLGERLTGA 243 Query 245 PVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQTLT 304 +T+DGSPRGARTVALWEP L +VIGE+GAPVRRSAG+E AR+M +L++E A+TL Sbjct 244 RCRAITDDGSPRGARTVALWEPPLLEEVIGENGAPVRRSAGSETARIMTELVIEDARTLA 303 Query 305 FVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLATT 364 F+RSRR E+ AL A+ L ++ L D V +YR GYL EDR AL +AL G LR +ATT Sbjct 304 FIRSRRGVEVAALSAQRALAEVDSSLPDRVKAYRGGYLPEDRRALERALLAGDLRAVATT 363 Query 365 NALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHP 424 NALELGVDIAGLDAV++AG+PGT+ASFWQQAGR+GR G+GALVV +ARDDPLDTYLVHHP Sbjct 364 NALELGVDIAGLDAVIVAGYPGTLASFWQQAGRAGRDGEGALVVFVARDDPLDTYLVHHP 423 Query 425 AALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWG---AVEVAESLVDDGLL 481 A+L++PVE V+DP NP++L P L CAA+ELPL + ++G A E +L DG+L Sbjct 424 PAVLERPVEATVLDPANPYVLEPHLACAASELPLKEECFDAFGGAPAAEAVHALTADGVL 483 Query 482 RRRNGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLH 541 RRR ++ +PH +V++RG+ G Q+ +VE +GR+LG+V A A HPGAVYLH Sbjct 484 RRRPHGWYWTERERPHRSVELRGSGGSQVAVVEGDSGRMLGTVDPDSACATVHPGAVYLH 543 Query 542 QGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGP-VALGLVPVTV 600 QGE++VVD LD +A VHAE P + T ARE DI+V T E GP VA+ L V V Sbjct 544 QGESFVVDELDLNTDLALVHAESPDWTTSARESVDISVLRTVEHRQVGPDVAVCLGDVEV 603 Query 601 TNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRS-----GIEATRIPG 655 T+ VVGYLR SG VLD V LD+P L T AV YTI+ + L S G++ RIPG Sbjct 604 TSQVVGYLRTLPSGRVLDQVPLDLPARKLVTRAVWYTISPELLCGSAPGGAGLDPARIPG 663 Query 656 SLHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRA 714 +LHAAEHAAIGLLPL A+CDR DIGG+STA + G +VFV+DG+PGGAGFA+RGF Sbjct 664 ALHAAEHAAIGLLPLFATCDRWDIGGVSTAMHADTGEATVFVHDGHPGGAGFADRGFAAL 723 Query 715 RTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLV 762 WL AT EAI +CECP+GCPSCVQSPKCGNGN+PLDKAGAV VL V Sbjct 724 FPWLAATREAIASCECPAGCPSCVQSPKCGNGNEPLDKAGAVAVLDAV 771 >gi|256374438|ref|YP_003098098.1| DEAD/DEAH box helicase domain-containing protein [Actinosynnema mirum DSM 43827] gi|255918741|gb|ACU34252.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] Length=807 Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/772 (59%), Positives = 546/772 (71%), Gaps = 15/772 (1%) Query 1 MASFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPW 60 MA+ G LL +AG P GE PL H ELP Q R WP WA P+VV A +RG+ +PW Sbjct 1 MANQGRRLLDRVLAGVPLGEAPLTHAEELPGQDAREVPWPSWAAPEVVSALVERGVPAPW 60 Query 61 SHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQL 120 SHQA+AAELA++GR VV+ TG ASGKSLAYQL VL+AL + RA ALYLSPTKALG DQ+ Sbjct 61 SHQAQAAELAWSGRDVVVATGTASGKSLAYQLPVLSALVAEGRATALYLSPTKALGADQI 120 Query 121 RAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 RA LA R A ++DGD+ + R + R + W+FSNP+M H VL NHARW Sbjct 121 RAVEELAVPGVRAA-----SFDGDTAMDERDWVRAHANWVFSNPDMLHRGVLPNHARWIR 175 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 R L +V+VDECH YRGVFGS+VA++LRRL R+ RY A P + ASAT A P A+A Sbjct 176 FFRGLAYVVVDECHAYRGVFGSHVALLLRRLRRVARRYGADPVFVLASATVAEPAASAER 235 Query 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 L+G+P V EDGSPR R VALWEP L S++ GE+GAPVRRSAGAE AR++ADL+VEGA Sbjct 236 LVGKPCAAVVEDGSPRAGRVVALWEPPLLSELEGENGAPVRRSAGAETARILADLVVEGA 295 Query 301 QTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRG 360 ++L FVRSR AELTA+GAR L ++ PEL VA+YR GYL E+R AL +ALA G L G Sbjct 296 RSLAFVRSRVGAELTAMGARRVLAEVDPELPGRVAAYRGGYLPEERRALERALASGDLLG 355 Query 361 LATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYL 420 +ATTNALELGVDIAGLDAVV+AGFPGT+ASFWQQAGR+GR G +LVV +ARDDPLDTYL Sbjct 356 VATTNALELGVDIAGLDAVVVAGFPGTLASFWQQAGRAGRSGGDSLVVFVARDDPLDTYL 415 Query 421 VHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSW--GAVEVAESLVDD 478 HHP A+L +PVE V+DP NP++L P L CAA ELPL + + + GA EV + LV D Sbjct 416 AHHPEAVLRRPVEATVLDPSNPYVLAPHLACAAAELPLTEECLAGFGEGAREVVDGLVAD 475 Query 479 GLLRRR-NGRYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGA 537 +LRRR NG ++ +P VD+RG+ G Q+V+VE TGR+LG+V A H GA Sbjct 476 RVLRRRPNGGWYWTARERPQGQVDIRGSGGEQVVVVEGDTGRVLGTVDPAAAHWTVHEGA 535 Query 538 VYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVP 597 VYLHQGE+YVVDSLD + GIA V AE P ++T AR+ DI V + F V + L Sbjct 536 VYLHQGESYVVDSLDLEAGIALVRAERPDWSTTARDTKDIVVVRVEQERRFAGVRVCLGE 595 Query 598 VTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRS-----GIEATR 652 V VT+ VV YLR+ SG+V+D V LD+P L T AV Y + D+L+ S G+ Sbjct 596 VEVTSQVVSYLRKLPSGQVVDQVPLDLPAQVLRTRAVWYAV-DDSLLGSAPGGAGLAPAT 654 Query 653 IPGSLHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGF 711 +PG+LHAAEHAAIGLLPL A+CDR DIGG+STA + G +VFV+DG+PGGAGFA+RGF Sbjct 655 VPGALHAAEHAAIGLLPLFATCDRWDIGGVSTALHQDTGEATVFVHDGHPGGAGFADRGF 714 Query 712 RRARTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVL 763 WL A EAI +C CP+GCPSCVQSPKCGNGNDPLDKAG VL +VL Sbjct 715 AAVVPWLAAAREAISSCACPAGCPSCVQSPKCGNGNDPLDKAGGAAVLDVVL 766 >gi|344045229|gb|EGV40902.1| DEAD/DEAH box helicase [Corynebacterium glutamicum S9114] Length=785 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/776 (55%), Positives = 531/776 (69%), Gaps = 23/776 (2%) Query 3 SFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 SFG L AA+ E L H+ LP + WP W + DA +RGI+ +SH Sbjct 4 SFGEEL--AAIVSKRYSESTLTHMVTLPASKAKYVDWPSWVPASLRDALVNRGINKLFSH 61 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 QA+ A LA+ G+HVV+ TG +SGKSL YQL +L+AL TD A ALYL+PTKALG DQL + Sbjct 62 QAQTAHLAWNGQHVVVATGTSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLTS 121 Query 123 AHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLL 182 L +P + P YDGD+P E R R+ SR++F+NP+M H S+L NH RWA LL Sbjct 122 TSTLLRDIPDFHPINPAPYDGDTPSEARSGIRDLSRFVFTNPDMVHASILANHPRWARLL 181 Query 183 RNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLI 242 R+L+F+++DECH YRGVFG+NV+MVLRRLLRL A Y +HPTVI ASAT++ P A+ L+ Sbjct 182 RHLKFIVIDECHAYRGVFGANVSMVLRRLLRLAAFYGSHPTVILASATSSDPEIHASRLL 241 Query 243 GQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQT 302 G PV VTEDG+P G RTV LWEP GE+GAPVRR+A EAA +MA LI EGA+T Sbjct 242 GAPVKAVTEDGAPTGERTVLLWEPGFIEGAEGENGAPVRRAASTEAANIMATLISEGART 301 Query 303 LTFVRSRRAAELTALGARARLVDIA-PELSDTVASYRAGYLAEDRSALHQALAEGQLRGL 361 LTFVRSRR AE+ AL A+ L + P+ + VASYRAGYLAEDR L + L +G L G+ Sbjct 302 LTFVRSRRQAEIVALRAQEELSTLGRPDFARRVASYRAGYLAEDRRRLERLLDDGTLLGV 361 Query 362 ATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLV 421 A+TNALELG+D+ GLDAVV AGFPGTVASFWQQAGR+GRRGQG+LVVL+ARD+P+DTYLV Sbjct 362 ASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSLVVLVARDEPMDTYLV 421 Query 422 HHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLL 481 HHPAALL+KPVE V DP NPH++ + CAA E PL + EV ++GA +V E L +GLL Sbjct 422 HHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEVEVAAFGAQKVVEKLEIEGLL 481 Query 482 RRRNGRYFPAPGVKP-------------HAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQ 528 R+R +F KP H V +RG G + +IV+ GRLLG++ + Sbjct 482 RKRPRGWFAVE--KPMSEDPDALSPDSAHQQVSLRGGSGSEFMIVDISDGRLLGTIDSAK 539 Query 529 APAAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTG-ERLV 587 A + HPGAVYLHQGE++V+D LD ++ +A E P Y T+AR TDI +T E V Sbjct 540 AMSQTHPGAVYLHQGESFVIDELDLEENLALARPELPDYTTYARSDTDIRITSAPLEDEV 599 Query 588 F---GPVALGLVPVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALV 644 F G + + V V VT+ V GY+ R G LD L +P L T AV YTI AL Sbjct 600 FDAGGGLWVANVEVQVTDRVTGYVTRLSDGTTLDATPLYLPPQILQTRAVAYTIDPLALE 659 Query 645 RSGIEATRIPGSLHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGG 703 GI AT IPG+LHAAEHAAIG+LPL+A+CDR DIGG+STA + G P+VFVYDG GG Sbjct 660 AMGIPATDIPGALHAAEHAAIGMLPLLATCDRWDIGGVSTALHADTGYPTVFVYDGMDGG 719 Query 704 AGFAERGFRRARTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVL 759 AGFA+ GFRR W+ AT E + +C C SGCPSCVQSPKCGNGN+PLDKAGA+++L Sbjct 720 AGFADTGFRRFAQWIDATFEVVRSCSCESGCPSCVQSPKCGNGNNPLDKAGAIKLL 775 >gi|289571886|ref|ZP_06452113.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289545640|gb|EFD49288.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length=405 Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/405 (99%), Positives = 405/405 (100%), Gaps = 0/405 (0%) Query 367 LELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHPAA 426 +ELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHPAA Sbjct 1 MELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHPAA 60 Query 427 LLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLRRRNG 486 LLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLRRRNG Sbjct 61 LLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLRRRNG 120 Query 487 RYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQGETY 546 RYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQGETY Sbjct 121 RYFPAPGVKPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQGETY 180 Query 547 VVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTVTNHVVG 606 VVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTVTNHVVG Sbjct 181 VVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGLVPVTVTNHVVG 240 Query 607 YLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIG 666 YLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIG Sbjct 241 YLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIG 300 Query 667 LLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGATAEAIE 726 LLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGATAEAIE Sbjct 301 LLPLVASCDRGDIGGMSTATGPEGLPSVFVYDGYPGGAGFAERGFRRARTWLGATAEAIE 360 Query 727 ACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 771 ACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP Sbjct 361 ACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSEESP 405 >gi|62389204|ref|YP_224606.1| DEAD/DEAH box helicase [Corynebacterium glutamicum ATCC 13032] gi|41324537|emb|CAF18877.1| DEAD/DEAH box helicase [Corynebacterium glutamicum ATCC 13032] Length=798 Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/776 (55%), Positives = 530/776 (69%), Gaps = 23/776 (2%) Query 3 SFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 SFG L AA+ E L H+ LP + WP W + DA +RGI+ +SH Sbjct 17 SFGEEL--AAIVSKRYSESTLTHMVTLPASKAKYVDWPSWVPASLRDALVNRGINKLFSH 74 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 Q + A LA+ G+HVV+ TG +SGKSL YQL +L+AL TD A ALYL+PTKALG DQL + Sbjct 75 QEQTAHLAWNGQHVVVATGTSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLTS 134 Query 123 AHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLL 182 L +P + P YDGD+P E R R+ SR++F+NP+M H S+L NH RWA LL Sbjct 135 TSTLLRDIPDFHPINPAPYDGDTPSEARSGIRDLSRFVFTNPDMVHASMLANHPRWARLL 194 Query 183 RNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLI 242 R+L+F+++DECH YRGVFG+NV+MVLRRLLR+ A Y +HPTVI ASAT++ P A+ L+ Sbjct 195 RHLKFIVIDECHAYRGVFGANVSMVLRRLLRIAAFYGSHPTVILASATSSDPEIHASRLL 254 Query 243 GQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQT 302 G PV VTEDG+P G RTV LWEP GE+GAPVRR+A EAA +MA LI EGA+T Sbjct 255 GAPVKAVTEDGAPTGERTVLLWEPGFIEGAEGENGAPVRRAASTEAANIMATLISEGART 314 Query 303 LTFVRSRRAAELTALGARARLVDIA-PELSDTVASYRAGYLAEDRSALHQALAEGQLRGL 361 LTFVRSRR AE+ AL A+ L + P+ + VASYRAGYLAEDR L + L +G L G+ Sbjct 315 LTFVRSRRQAEIVALRAQEELSTLGRPDFARRVASYRAGYLAEDRRRLERLLDDGTLLGV 374 Query 362 ATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLV 421 A+TNALELG+D+ GLDAVV AGFPGTVASFWQQAGR+GRRGQG+LVVL+ARD+P+DTYLV Sbjct 375 ASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSLVVLVARDEPMDTYLV 434 Query 422 HHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLL 481 HHPAALL+KPVE V DP NPH++ + CAA E PL +AEV ++GA +V E L +GLL Sbjct 435 HHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEAEVAAFGAQKVVEKLEIEGLL 494 Query 482 RRRNGRYFPAPGVKP-------------HAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQ 528 R+R +F KP H V +RG G + +IV+ GRLLG++ + Sbjct 495 RKRPRGWFAVE--KPMSEDPDELSPDSAHQQVSLRGGSGSEFMIVDITDGRLLGTIDSAK 552 Query 529 APAAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTG-ERLV 587 A + HPGAVYLHQGE++V+D LD ++ +A E P Y T+AR TDI +T E V Sbjct 553 AMSQTHPGAVYLHQGESFVIDELDLEENLALARPELPDYTTYARSDTDIRITSAPLEDEV 612 Query 588 F---GPVALGLVPVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALV 644 F G + + V V VT+ V GY+ R G LD L +P L T AV YTI AL Sbjct 613 FDAGGGLWVANVEVQVTDRVTGYVTRLSDGTTLDATPLYLPPQILQTRAVAYTIDPLALE 672 Query 645 RSGIEATRIPGSLHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGG 703 GI A IPG+LHAAEHAAIG+LPL+A+CDR DIGG+STA + G P+VFVYDG GG Sbjct 673 AMGIPAADIPGALHAAEHAAIGMLPLLATCDRWDIGGVSTALHADTGYPTVFVYDGMDGG 732 Query 704 AGFAERGFRRARTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVL 759 AGFA+ GFRR W+ AT E + +C C SGCPSCVQSPKCGNGN+PLDKAGA+++L Sbjct 733 AGFADTGFRRFAQWIEATFEVVRSCSCESGCPSCVQSPKCGNGNNPLDKAGAIKLL 788 >gi|145294438|ref|YP_001137259.1| hypothetical protein cgR_0393 [Corynebacterium glutamicum R] gi|140844358|dbj|BAF53357.1| hypothetical protein [Corynebacterium glutamicum R] Length=785 Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/776 (55%), Positives = 530/776 (69%), Gaps = 23/776 (2%) Query 3 SFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 SFG L AA+ E L H+ LP + WP W + DA +RGI+ +SH Sbjct 4 SFGEEL--AAIVSKRYSESTLTHMVTLPASKAKYVDWPSWVPASLRDALVNRGINKLFSH 61 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 Q + A LA+ G+HVV+ TG +SGKSL YQL +L+AL TD A ALYL+PTKALG DQL + Sbjct 62 QEQTAHLAWNGQHVVVATGTSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLTS 121 Query 123 AHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLL 182 L +P + P YDGD+P E R R+ SR++F+NP+M H S+L NH+RWA LL Sbjct 122 TSTLLRDIPDFHPINPAPYDGDTPSEARSGIRDLSRFVFTNPDMVHASMLANHSRWARLL 181 Query 183 RNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLI 242 R+L+F+++DECH YRGVFG+NV+MVLRRLLRL A Y +HPTVI ASAT++ P A+ L+ Sbjct 182 RHLKFIVIDECHAYRGVFGANVSMVLRRLLRLAAFYGSHPTVILASATSSDPEIHASRLL 241 Query 243 GQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQT 302 G PV VTEDG+P G RTV LWEP GE+GAPVRR+A EAA +MA LI EGA+T Sbjct 242 GAPVKAVTEDGAPTGERTVLLWEPGFIEGAEGENGAPVRRAASTEAANIMATLISEGART 301 Query 303 LTFVRSRRAAELTALGARARLVDIA-PELSDTVASYRAGYLAEDRSALHQALAEGQLRGL 361 LTFVRSRR AE+ AL A+ L + P+ + VASYRAGYLAEDR L + L +G L G+ Sbjct 302 LTFVRSRRQAEIVALRAQEELSTLGRPDFARRVASYRAGYLAEDRRRLERLLDDGTLLGV 361 Query 362 ATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLV 421 A+TNALELG+D+ GLDAVV AGFPGTVASFWQQAGR+GRRGQG+LVVL+ARD+P+DTYLV Sbjct 362 ASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSLVVLVARDEPMDTYLV 421 Query 422 HHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLL 481 HHPAALL+KPVE V DP NPH++ + CAA E PL + EV ++GA +V E L +GLL Sbjct 422 HHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEVEVAAFGAQKVVEKLEIEGLL 481 Query 482 RRRNGRYFPAPGVKP-------------HAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQ 528 R+R +F KP H V +RG G + +IV+ GRLLG++ + Sbjct 482 RKRPRGWFAVE--KPMSEDPDELIPDSAHQQVSLRGGSGSEFMIVDISDGRLLGTIDSAK 539 Query 529 APAAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTG-ERLV 587 A + HPGAVYLHQGE++V+D LD ++ +A E P Y T+AR TDI +T E V Sbjct 540 AMSQTHPGAVYLHQGESFVIDELDLEENLALARPELPDYTTYARSDTDIRITSAPLEDEV 599 Query 588 F---GPVALGLVPVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALV 644 F G + + V V VT+ V GY+ R G LD L +P L T AV YTI AL Sbjct 600 FDAGGGLWVANVEVQVTDRVTGYVTRLSDGTTLDATPLYLPPQILQTRAVAYTIDPLALE 659 Query 645 RSGIEATRIPGSLHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGG 703 GI A IPG+LHAAEHAAIG+LPL+A+CDR DIGG+STA + G P+VFVYDG GG Sbjct 660 AMGIPAADIPGALHAAEHAAIGMLPLLATCDRWDIGGVSTALHADTGYPTVFVYDGMDGG 719 Query 704 AGFAERGFRRARTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVL 759 AGFA+ GFRR W+ AT E + +C C SGCPSCVQSPKCGNGN+PLDKAGA+++L Sbjct 720 AGFADTGFRRFAQWIEATFEVVRSCSCESGCPSCVQSPKCGNGNNPLDKAGAIKLL 775 >gi|259506077|ref|ZP_05748979.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium efficiens YS-314] gi|259166365|gb|EEW50919.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium efficiens YS-314] Length=866 Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/786 (55%), Positives = 532/786 (68%), Gaps = 23/786 (2%) Query 3 SFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 SFG L P E L H+ LP ++ R WP W + + RG+ ++H Sbjct 82 SFGEDLSRIITRRHP--ESTLTHMVTLPARSARFTPWPRWVPAGLREQLGHRGVDKLYAH 139 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 QAE AELA+AG HVV+ TG +SGKSL YQL +L LATD A ALYL+PTKALG DQL A Sbjct 140 QAETAELAWAGHHVVVATGTSSGKSLGYQLPILATLATDPTACALYLTPTKALGSDQLNA 199 Query 123 AHALAAAVPRLAD--VAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAV 180 L A P LA + P YDGD+P E R RE SR++FSNP+M H S+L NHARWA Sbjct 200 TTELIRATPELAGAGIHPAPYDGDTPTEARSGIRELSRFVFSNPDMVHASLLANHARWAR 259 Query 181 LLRNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAAD 240 +LR+LRF++VDECH YRGVFG+ +++VLRRLLR+ A Y +HPTVI ASAT+ P A+ Sbjct 260 VLRHLRFIVVDECHAYRGVFGAGISLVLRRLLRIAAHYGSHPTVILASATSTDPAIHASR 319 Query 241 LIGQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGA 300 LIG PV VT+DG+P G RTV LWEP GE+GAPVRR+A EAA +M LI EGA Sbjct 320 LIGAPVRAVTDDGAPTGERTVMLWEPGFIEGAEGENGAPVRRAASTEAAHLMGTLIAEGA 379 Query 301 QTLTFVRSRRAAELTALGARARLVDIA-PELSDTVASYRAGYLAEDRSALHQALAEGQLR 359 +TLTFVRSRR AE+ AL + L + P+ VA YRAGYLAEDR L + L +G L Sbjct 380 RTLTFVRSRRQAEIVALRTQEELSLLGRPDFGARVAPYRAGYLAEDRRRLERMLDDGTLL 439 Query 360 GLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTY 419 G+ATTNALELG+D+ GLDAVV AGFPGT+ASFWQQAGR+GRRGQG+LV+L+ARD+P+DTY Sbjct 440 GVATTNALELGIDVGGLDAVVTAGFPGTIASFWQQAGRAGRRGQGSLVILVARDEPMDTY 499 Query 420 LVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDG 479 LVHHP ALL KPVE V DP NPH+L + CAA E PL +AEV ++GA +V E L D+G Sbjct 500 LVHHPDALLKKPVEAAVFDPTNPHILRGHVYCAAAEQPLTEAEVEAFGAQDVVEQLTDEG 559 Query 480 LLRRRNGRYFPA----------PGVKP---HAAVDVRGAIGGQIVIVEAGTGRLLGSVGV 526 LRRR +F A + P H V++RG G + +IV+ GRLLG++ Sbjct 560 FLRRRPRGWFAAHRPTGDLQDGQELTPDTAHQTVNLRGGSGSEFMIVDISDGRLLGTIDA 619 Query 527 GQAPAAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGT-GER 585 +A + HPGAVYLHQGE +V+D LD ++ +A E+P Y TFAR TDI +TG+ GE Sbjct 620 ARAMSQVHPGAVYLHQGEHFVIDELDIEEQLALARPENPEYTTFARSDTDIRITGSPGED 679 Query 586 LVFGP---VALGLVPVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDA 642 VF P + + V V VT+ V GY+ + G LD L +P L T AV YTI A Sbjct 680 EVFNPGGGLWVANVAVEVTDRVTGYVTKLPDGTTLDATPLYLPPQQLNTRAVAYTIDPLA 739 Query 643 LVRSGIEATRIPGSLHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYP 701 L GI IPG+LHAAEHAAIG+LPL+A+CDR DIGG+STA P+ G P+VFVYDG Sbjct 740 LSAMGIAPADIPGALHAAEHAAIGMLPLLATCDRWDIGGVSTALHPDTGYPTVFVYDGME 799 Query 702 GGAGFAERGFRRARTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRL 761 GGAGFA+ GFRR W+ AT EA+ +C C SGCPSCVQSPKCGNGN+PLDKAGA+++L Sbjct 800 GGAGFADCGFRRFGEWIEATFEAVRSCSCESGCPSCVQSPKCGNGNNPLDKAGAIKLLGA 859 Query 762 VLAELS 767 ++ L Sbjct 860 IVTLLQ 865 >gi|19551557|ref|NP_599559.1| helicase [Corynebacterium glutamicum ATCC 13032] gi|21323071|dbj|BAB97700.1| Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [Corynebacterium glutamicum ATCC 13032] Length=785 Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/776 (55%), Positives = 530/776 (69%), Gaps = 23/776 (2%) Query 3 SFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 SFG L AA+ E L H+ LP + WP W + DA +RGI+ +SH Sbjct 4 SFGEEL--AAIVSKRYSESTLTHMVTLPASKAKYVDWPSWVPASLRDALVNRGINKLFSH 61 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 Q + A LA+ G+HVV+ TG +SGKSL YQL +L+AL TD A ALYL+PTKALG DQL + Sbjct 62 QEQTAHLAWNGQHVVVATGTSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLTS 121 Query 123 AHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLL 182 L +P + P YDGD+P E R R+ SR++F+NP+M H S+L NH RWA LL Sbjct 122 TSTLLRDIPDFHPINPAPYDGDTPSEARSGIRDLSRFVFTNPDMVHASMLANHPRWARLL 181 Query 183 RNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLI 242 R+L+F+++DECH YRGVFG+NV+MVLRRLLR+ A Y +HPTVI ASAT++ P A+ L+ Sbjct 182 RHLKFIVIDECHAYRGVFGANVSMVLRRLLRIAAFYGSHPTVILASATSSDPEIHASRLL 241 Query 243 GQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQT 302 G PV VTEDG+P G RTV LWEP GE+GAPVRR+A EAA +MA LI EGA+T Sbjct 242 GAPVKAVTEDGAPTGERTVLLWEPGFIEGAEGENGAPVRRAASTEAANIMATLISEGART 301 Query 303 LTFVRSRRAAELTALGARARLVDIA-PELSDTVASYRAGYLAEDRSALHQALAEGQLRGL 361 LTFVRSRR AE+ AL A+ L + P+ + VASYRAGYLAEDR L + L +G L G+ Sbjct 302 LTFVRSRRQAEIVALRAQEELSTLGRPDFARRVASYRAGYLAEDRRRLERLLDDGTLLGV 361 Query 362 ATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLV 421 A+TNALELG+D+ GLDAVV AGFPGTVASFWQQAGR+GRRGQG+LVVL+ARD+P+DTYLV Sbjct 362 ASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSLVVLVARDEPMDTYLV 421 Query 422 HHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLL 481 HHPAALL+KPVE V DP NPH++ + CAA E PL +AEV ++GA +V E L +GLL Sbjct 422 HHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEAEVAAFGAQKVVEKLEIEGLL 481 Query 482 RRRNGRYFPAPGVKP-------------HAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQ 528 R+R +F KP H V +RG G + +IV+ GRLLG++ + Sbjct 482 RKRPRGWFAVE--KPMSEDPDELSPDSAHQQVSLRGGSGSEFMIVDITDGRLLGTIDSAK 539 Query 529 APAAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTG-ERLV 587 A + HPGAVYLHQGE++V+D LD ++ +A E P Y T+AR TDI +T E V Sbjct 540 AMSQTHPGAVYLHQGESFVIDELDLEENLALARPELPDYTTYARSDTDIRITSAPLEDEV 599 Query 588 F---GPVALGLVPVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALV 644 F G + + V V VT+ V GY+ R G LD L +P L T AV YTI AL Sbjct 600 FDAGGGLWVANVEVQVTDRVTGYVTRLSDGTTLDATPLYLPPQILQTRAVAYTIDPLALE 659 Query 645 RSGIEATRIPGSLHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGG 703 GI A IPG+LHAAEHAAIG+LPL+A+CDR DIGG+STA + G P+VFVYDG GG Sbjct 660 AMGIPAADIPGALHAAEHAAIGMLPLLATCDRWDIGGVSTALHADTGYPTVFVYDGMDGG 719 Query 704 AGFAERGFRRARTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVL 759 AGFA+ GFRR W+ AT E + +C C SGCPSCVQSPKCGNGN+PLDKAGA+++L Sbjct 720 AGFADTGFRRFAQWIEATFEVVRSCSCESGCPSCVQSPKCGNGNNPLDKAGAIKLL 775 >gi|237786537|ref|YP_002907242.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385] gi|237759449|gb|ACR18699.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385] Length=813 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/795 (55%), Positives = 521/795 (66%), Gaps = 39/795 (4%) Query 3 SFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 SFG LL + A P E + H LP + GR WP W D D D+GI+ PW H Sbjct 9 SFGDELLESIRATFPRSE--ILHTETLPARKGRHGEWPSWLPLDFHDHLVDQGIARPWVH 66 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 Q A + G V+ TG +SGKSL YQ+ +L LA + A ALYL+PTKAL +DQL Sbjct 67 QVRVANALWEGHDTVVATGTSSGKSLGYQMPILTTLAEEKNATALYLTPTKALANDQLAH 126 Query 123 AHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLL 182 + V L V+ YDGD+P E RR R+ +W+F+NP+M LSVL HARW LL Sbjct 127 VAGMTREVGSLRGVSIGGYDGDTPPEARRAIRDSVQWVFTNPDMMQLSVLGAHARWGRLL 186 Query 183 RNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLI 242 RNLR+++VDECH YRG+FG++V++ LRRL RL Y A P + ASAT + P A+ L Sbjct 187 RNLRYIVVDECHAYRGMFGAHVSLFLRRLDRLARAYGASPVFVMASATASRPAVHASRLC 246 Query 243 GQ---PVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEG 299 G VEVT+D SP G RTV LWEP+ D+ GEHGAPVR+ A EAA VMA+L+ +G Sbjct 247 GHDADDFVEVTDDASPAGERTVVLWEPSFLPDMEGEHGAPVRKPATQEAADVMANLVAQG 306 Query 300 AQTLTFVRSRRAAELTALGARARLVDIA-PELSDTVASYRAGYLAEDRSALHQALAEGQL 358 A+TLTFVRSRR+AE A A L + PE + +A+YRAGYLAEDR L L G+L Sbjct 307 ARTLTFVRSRRSAETVAARASEALGRLGRPEDAARIAAYRAGYLAEDRRKLEHDLDNGKL 366 Query 359 RGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDT 418 G+ATTNALELGVDI GLD+VV G+PGT+ASFWQQAGR+GRRGQG+LV LIARD+P+DT Sbjct 367 LGVATTNALELGVDIGGLDSVVACGYPGTIASFWQQAGRAGRRGQGSLVTLIARDEPMDT 426 Query 419 YLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDD 478 YLVHHP LL PVE+ V +P NP+++ P L CAA E PL D E+ WGA AE L D Sbjct 427 YLVHHPEVLLGSPVEQTVFNPHNPYVMVPHLYCAAVERPLTDEEIDQWGAWSSAEYLRDA 486 Query 479 GLLRRRNGRYFPA----------------------------PGVKP---HAAVDVRGAIG 507 GLLRRR +F P + P H+ V +RG G Sbjct 487 GLLRRRQRGWFAVERPIEAMGAPDDAENRGVEAAGLGALLPPDISPVNAHSVVSIRGDDG 546 Query 508 GQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGY 567 G + IVE TGRL+G + G+A + H GAVYLHQG++YVVD L DG+A VH E P + Sbjct 547 GDVAIVEGDTGRLVGMIDQGRAMSQTHTGAVYLHQGDSYVVDDLSVDDGLALVHREAPAW 606 Query 568 ATFAREVTDIAVTGTGERLVFGP-VALGLVPVTVTNHVVGYLRRQLSGEVLDFVELDMPE 626 T+ARE TDI+V T G V L V V VT+ VV Y+RR SGEVLD V LD+PE Sbjct 607 TTWARENTDISVLSTLSSHELGDGVWLAFVEVEVTHQVVDYMRRMPSGEVLDVVSLDLPE 666 Query 627 HTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEHAAIGLLPLVASCDRGDIGGMSTAT 686 TL TTAV YT+ L R G+E PGSLHAAEHAAIG+LPL+A+CDR DIGG+STA Sbjct 667 QTLTTTAVAYTVEPSTLRRWGVEERDWPGSLHAAEHAAIGMLPLIATCDRWDIGGVSTAL 726 Query 687 GPE-GLPSVFVYDGYPGGAGFAERGFRRARTWLGATAEAIEACECPSGCPSCVQSPKCGN 745 + GLP+VFVYDGYPGGAGFAE G+RR W+ ATAEA+ CEC +GCPSCVQSPKCGN Sbjct 727 HQDTGLPTVFVYDGYPGGAGFAECGYRRFHEWITATAEAVAHCECENGCPSCVQSPKCGN 786 Query 746 GNDPLDKAGAVRVLR 760 GN+PLDKAGAVRVLR Sbjct 787 GNEPLDKAGAVRVLR 801 >gi|25026861|ref|NP_736915.1| hypothetical protein CE0305 [Corynebacterium efficiens YS-314] gi|23492141|dbj|BAC17115.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length=898 Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/769 (56%), Positives = 527/769 (69%), Gaps = 21/769 (2%) Query 20 ERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAAELAYAGRHVVIG 79 E L H+ LP ++ R WP W + + RG+ ++HQAE AELA+AG HVV+ Sbjct 129 ESTLTHMVTLPARSARFTPWPRWVPAGLREQLGHRGVDKLYAHQAETAELAWAGHHVVVA 188 Query 80 TGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAAHALAAAVPRLAD--VA 137 TG +SGKSL YQL +L LATD A ALYL+PTKALG DQL A L A P LA + Sbjct 189 TGTSSGKSLGYQLPILATLATDPTACALYLTPTKALGSDQLNATTELIRATPELAGAGIH 248 Query 138 PTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNLRFVIVDECHYYR 197 P YDGD+P E R RE SR++FSNP+M H S+L NHARWA +LR+LRF++VDECH YR Sbjct 249 PAPYDGDTPTEARSGIRELSRFVFSNPDMVHASLLANHARWARVLRHLRFIVVDECHAYR 308 Query 198 GVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLIGQPVVEVTEDGSPRG 257 GVFG+ +++VLRRLLR+ A Y +HPTVI ASAT+ P A+ LIG PV VT+DG+P G Sbjct 309 GVFGAGISLVLRRLLRIAAHYGSHPTVILASATSTDPAIHASRLIGAPVRAVTDDGAPTG 368 Query 258 ARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQTLTFVRSRRAAELTAL 317 RTV LWEP GE+GAPVRR+A EAA +M LI EGA+TLTFVRSRR AE+ AL Sbjct 369 ERTVMLWEPGFIEGAEGENGAPVRRAASTEAAHLMGTLIAEGARTLTFVRSRRQAEIVAL 428 Query 318 GARARLVDIA-PELSDTVASYRAGYLAEDRSALHQALAEGQLRGLATTNALELGVDIAGL 376 + L + P+ VA YRAGYLAEDR L + L +G L G+ATTNALELG+D+ GL Sbjct 429 RTQEELSLLGRPDFGARVAPYRAGYLAEDRRRLERMLDDGTLLGVATTNALELGIDVGGL 488 Query 377 DAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHPAALLDKPVERVV 436 DAVV AGFPGT+ASFWQQAGR+GRRGQG+LV+L+ARD+P+DTYLVHHP ALL KPVE V Sbjct 489 DAVVTAGFPGTIASFWQQAGRAGRRGQGSLVILVARDEPMDTYLVHHPDALLKKPVEAAV 548 Query 437 IDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLRRRNGRYFPA----- 491 DP NPH+L + CAA E PL +AEV ++GA +V E L D+G LRRR +F A Sbjct 549 FDPTNPHILRGHVYCAAAEQPLTEAEVEAFGAQDVVEQLTDEGFLRRRPRGWFAAHRPTG 608 Query 492 -----PGVKP---HAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQG 543 + P H V++RG G + +IV+ GRLLG++ +A + HPGAVYLHQG Sbjct 609 DLQDGQELTPDTAHQTVNLRGGSGSEFMIVDISDGRLLGTIDAARAMSQVHPGAVYLHQG 668 Query 544 ETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGT-GERLVFGP---VALGLVPVT 599 E +V+D LD ++ +A E+P Y TFAR TDI +TG+ GE VF P + + V V Sbjct 669 EHFVIDELDIEEQLALARPENPEYTTFARSDTDIRITGSPGEDEVFNPGGGLWVANVAVE 728 Query 600 VTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHA 659 VT+ V GY+ + G LD L +P L T AV YTI AL GI IPG+LHA Sbjct 729 VTDRVTGYVTKLPDGTTLDATPLYLPPQQLNTRAVAYTIDPLALSAMGIAPADIPGALHA 788 Query 660 AEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRARTWL 718 AEHAAIG+LPL+A+CDR DIGG+STA P+ G P+VFVYDG GGAGFA+ GFRR W+ Sbjct 789 AEHAAIGMLPLLATCDRWDIGGVSTALHPDTGYPTVFVYDGMEGGAGFADCGFRRFGEWI 848 Query 719 GATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELS 767 AT EA+ +C C SGCPSCVQSPKCGNGN+PLDKAGA+++L ++ L Sbjct 849 EATFEAVRSCSCESGCPSCVQSPKCGNGNNPLDKAGAIKLLGAIVTLLQ 897 >gi|38232940|ref|NP_938707.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199198|emb|CAE48824.1| Putative ATP-dependent RNA helicase, DeaD/DeaH box family [Corynebacterium diphtheriae] Length=778 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/758 (55%), Positives = 526/758 (70%), Gaps = 13/758 (1%) Query 9 LAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAAE 68 LA +VA P H+ +PP++ WP W P++ RGI+ +SHQA+AA+ Sbjct 16 LAESVAQRYPNST-CTHIENIPPRSAHYLPWPAWTAPELQRELERRGIAQLYSHQAQAAD 74 Query 69 LAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAAHALAA 128 LA+ G +VV+ TG +SGKSL+Y L +L+A++ D +A ALYL+PTKALG DQL +L Sbjct 75 LAWTGTNVVVATGTSSGKSLSYLLPILSAMSQDPQACALYLTPTKALGSDQLAHVMSLVG 134 Query 129 AVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNLRFV 188 V L V P YDGD+P + R RE+SR++FSNP+M H +L NH RWA R+LRF+ Sbjct 135 NVDTLTGVHPAPYDGDTPTDARAGIREQSRFVFSNPDMLHTGILPNHQRWARFFRHLRFI 194 Query 189 IVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLIGQPVVE 248 ++DECH YRGVFG+ VA+V+RRLLRL ARY + PTV+ ASAT+ P A A+ LIGQPVV Sbjct 195 VIDECHSYRGVFGAGVALVIRRLLRLAARYGSTPTVMLASATSNDPAAHASTLIGQPVVA 254 Query 249 VTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQTLTFVRS 308 VTEDG+P GARTV LWEP GE+GAP+RR+A E+A +MA LI GA+TLTFVRS Sbjct 255 VTEDGAPTGARTVMLWEPGFVDGAEGENGAPIRRAASTESAGIMATLIAAGARTLTFVRS 314 Query 309 RRAAELTALGARARLVDIA-PELSDTVASYRAGYLAEDRSALHQALAEGQLRGLATTNAL 367 RR AE+ AL L + + VA+YRAGYLAEDR AL + L +G L G+A+TNAL Sbjct 315 RRQAEVVALRCAEELACHGRHDFASRVAAYRAGYLAEDRRALERKLDDGTLLGVASTNAL 374 Query 368 ELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHPAAL 427 ELG+D+ GLDAVV AG+PGTVASFWQQAGR+GRRGQG+LV L+ARDDP+DTYLVHHP AL Sbjct 375 ELGIDVGGLDAVVTAGYPGTVASFWQQAGRAGRRGQGSLVTLVARDDPMDTYLVHHPEAL 434 Query 428 LDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLLRRRNGR 487 L +P+E++V DP NPH+L L CAA E PL +AE+ + A EVA+ L DG LR R Sbjct 435 LGRPMEKIVFDPHNPHILSGHLYCAAAESPLTEAEIDALNAREVAQQLAHDGYLRHRPTG 494 Query 488 YFPA--PGVKP-HAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQGE 544 +F PG P H+ V +RG+ G + IV+ GRLLG++ +A + HPGAVYLHQGE Sbjct 495 WFAVEQPGQPPAHSLVSLRGS-GHHVAIVDRSDGRLLGTIDSARAASQVHPGAVYLHQGE 553 Query 545 TYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGPVALGL--VPVTVTN 602 T+V++ LD D +A + P Y TFAR TDI + G +++ L + + V VT+ Sbjct 554 TFVIEELD--DQVALAVPDQPDYQTFARSTTDIRIVGEVDKVCNPAPGLWVSNLVVEVTD 611 Query 603 HVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEATRIPGSLHAAEH 662 VVGY + G VL V L MP TL T AV YT+ D LV + T +PG+LHAAEH Sbjct 612 RVVGYTMKASDGSVLAMVPLQMPPQTLVTRAVAYTV--DPLVLDSLGITDVPGALHAAEH 669 Query 663 AAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAERGFRRARTWLGAT 721 AAIGLLPL+A+CDR DIGG+STA P+ GLP+VFVYDG+PGGAGFA+ G+ R W+ T Sbjct 670 AAIGLLPLIATCDRWDIGGVSTAEHPDTGLPTVFVYDGHPGGAGFADCGYERFPEWVATT 729 Query 722 AEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVL 759 EAI +C+C SGCPSCVQSPKCGNGNDPL K GA+ +L Sbjct 730 FEAIRSCQCESGCPSCVQSPKCGNGNDPLSKEGAIALL 767 >gi|213966014|ref|ZP_03394203.1| dead/deah box helicase [Corynebacterium amycolatum SK46] gi|213951309|gb|EEB62702.1| dead/deah box helicase [Corynebacterium amycolatum SK46] Length=780 Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/779 (55%), Positives = 532/779 (69%), Gaps = 18/779 (2%) Query 3 SFGSHLLAAAVAGTPPGERPLRHVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSH 62 SFG LL + P + H+A+LP +AG WPEW + + DRGI + W+H Sbjct 5 SFGRELLGPVIRAHPRAT--VTHIADLPARAGVTAPWPEWVPGWLKEVLVDRGIENLWTH 62 Query 63 QAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRA 122 QA A LA G H V+ TG ASGKSL Y L VL L+ A ALYLSPTKALG DQL Sbjct 63 QAATANLAREGVHCVVATGTASGKSLGYLLPVLTELSATPAATALYLSPTKALGADQLDT 122 Query 123 AHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLL 182 A A+A P + YDGD+P + RR R+ +RW+F+NP+M H+SVL NH RW +L Sbjct 123 ARAMA---PVSLSSLISLYDGDTPQDARRAIRDHARWVFTNPDMLHVSVLGNHVRWTRML 179 Query 183 RNLRFVIVDECHYYRGVFGSNVAMVLRRLLRLCARYSAHPTVIFASATTASPGATAADLI 242 RNLR+++VDECH YRGVFG+NVA +LRRLLRL Y A PTVIFASATT P A LI Sbjct 180 RNLRYIVVDECHAYRGVFGANVAQILRRLLRLSREYGASPTVIFASATTNDPADQARRLI 239 Query 243 GQPVVEVTEDGSPRGARTVALWEPALRSDVIGEHGAPVRRSAGAEAARVMADLIVEGAQT 302 G+PV VTEDG+P G RT+ALWEP L D+ GE+GAPVRR A EAA +MADL+VEGA+T Sbjct 240 GEPVEAVTEDGAPVGERTIALWEPGLLPDLQGENGAPVRRPAPTEAADIMADLLVEGART 299 Query 303 LTFVRSRRAAELTALGARARLVD-IAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGL 361 LTF RSR +AE ALG R RL ++++ + SYRAGYLAE+R + + L +G L G+ Sbjct 300 LTFTRSRSSAEKVALGVRERLEKRRRSDIAERIESYRAGYLAEERRDIERMLDDGTLLGV 359 Query 362 ATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLV 421 ATTNALELG+D+ GLDAVV AGFPGTVASFWQQAGR+GRRGQGALVVL+ARDDP+DTYLV Sbjct 360 ATTNALELGIDVGGLDAVVQAGFPGTVASFWQQAGRAGRRGQGALVVLVARDDPMDTYLV 419 Query 422 HHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDDAEVRSWGAVEVAESLVDDGLL 481 H+P+ALL +PVE+ V DP NPH++ L CAA E P+ +++++WG + VAE +V G L Sbjct 420 HNPSALLGRPVEKTVFDPRNPHVVWSHLYCAAVEKPVTTSQLQAWGTLPVAEDMVSAGWL 479 Query 482 RRRNGR-----YFPA-----PGV-KPHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAP 530 R+R Y+P P + H AV+VRG G ++ IV+ GRLLG++ +G+A Sbjct 480 RKRTWEGQEPVYYPTDRDEGPRIATAHDAVNVRGGDGQEVAIVDQTDGRLLGTIDLGRAM 539 Query 531 AAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGERLVFGP 590 H GAVYLH+GE+Y+VD LDF +A VH E P Y+T +R T I + + + Sbjct 540 QQVHDGAVYLHRGESYLVDQLDFDSLVALVHPEQPRYSTSSRMDTTIRILDVDDMRHYQG 599 Query 591 VALGLVPVTVTNHVVGYLRRQLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEA 650 + + V V + V YLRR +GE+LD VELD P L T AV YT+ L G+ + Sbjct 600 LQVASCQVEVFHQVTSYLRRLDTGEILDSVELDYPPQRLVTRAVAYTMPESTLRSWGVGS 659 Query 651 TRIPGSLHAAEHAAIGLLPLVASCDRGDIGGMSTATGPE-GLPSVFVYDGYPGGAGFAER 709 PG+LHAAEHAAIG+LPL+A+CDR DIGG+ST + P+VFVYDG+PGGAGFA+R Sbjct 660 DIAPGALHAAEHAAIGMLPLIATCDRWDIGGVSTVMHADTQQPTVFVYDGHPGGAGFADR 719 Query 710 GFRRARTWLGATAEAIEACECPSGCPSCVQSPKCGNGNDPLDKAGAVRVLRLVLAELSE 768 G+ W+ AT +A+ ACEC SGCPSC+QSPKCGNGNDPLDKAGA++VL V L++ Sbjct 720 GYEAFAQWVRATRDAVAACECESGCPSCIQSPKCGNGNDPLDKAGAIKVLSGVSRALND 778 Lambda K H 0.319 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1847749671852 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40