BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3651
Length=345
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610787|ref|NP_218168.1| hypothetical protein Rv3651 [Mycoba... 694 0.0
gi|289445245|ref|ZP_06434989.1| conserved hypothetical protein [... 692 0.0
gi|240173312|ref|ZP_04751970.1| hypothetical protein MkanA1_2862... 565 4e-159
gi|254821831|ref|ZP_05226832.1| hypothetical protein MintA_17997... 556 2e-156
gi|296166707|ref|ZP_06849132.1| conserved hypothetical protein [... 555 6e-156
gi|183985110|ref|YP_001853401.1| hypothetical protein MMAR_5142 ... 554 6e-156
gi|254773483|ref|ZP_05214999.1| hypothetical protein MaviaA2_022... 553 2e-155
gi|118619395|ref|YP_907727.1| hypothetical protein MUL_4226 [Myc... 552 2e-155
gi|342862012|ref|ZP_08718656.1| hypothetical protein MCOL_24095 ... 551 6e-155
gi|41406519|ref|NP_959355.1| hypothetical protein MAP0421c [Myco... 550 1e-154
gi|118464644|ref|YP_879795.1| hypothetical protein MAV_0513 [Myc... 523 2e-146
gi|333992575|ref|YP_004525189.1| hypothetical protein JDM601_393... 465 5e-129
gi|126437750|ref|YP_001073441.1| hypothetical protein Mjls_5186 ... 427 1e-117
gi|108801763|ref|YP_641960.1| hypothetical protein Mmcs_4800 [My... 425 7e-117
gi|118472244|ref|YP_890383.1| hypothetical protein MSMEG_6163 [M... 415 4e-114
gi|120406348|ref|YP_956177.1| hypothetical protein Mvan_5400 [My... 382 7e-104
gi|315446278|ref|YP_004079157.1| hypothetical protein Mspyr1_478... 377 2e-102
gi|145221982|ref|YP_001132660.1| hypothetical protein Mflv_1390 ... 377 2e-102
gi|169630747|ref|YP_001704396.1| hypothetical protein MAB_3668 [... 175 1e-41
gi|169630746|ref|YP_001704395.1| hypothetical protein MAB_3667 [... 172 8e-41
gi|289441081|ref|ZP_06430825.1| conserved hypothetical protein [... 163 4e-38
gi|312141898|ref|YP_004009234.1| hypothetical protein REQ_46050 ... 122 1e-25
gi|325672832|ref|ZP_08152526.1| hypothetical protein HMPREF0724_... 121 2e-25
gi|226334778|ref|YP_002784450.1| hypothetical protein ROP_pKNR-0... 114 3e-23
gi|317508399|ref|ZP_07966070.1| hypothetical protein HMPREF9336_... 96.3 6e-18
gi|3818510|gb|AAC73057.1| unknown [Rhodococcus sp. X309] 73.2 6e-11
gi|229489859|ref|ZP_04383715.1| conserved hypothetical protein [... 72.8 7e-11
gi|197658944|emb|CAR47817.1| hypothetical protein [Rhodococcus s... 58.5 1e-06
gi|190015952|ref|YP_001965160.1| hypothetical protein PNSL1.057 ... 51.6 2e-04
gi|262118117|ref|YP_003275887.1| hypothetical protein Gbro_4881 ... 42.7 0.077
gi|111019417|ref|YP_702389.1| hypothetical protein RHA1_ro02426 ... 41.2 0.23
gi|111027103|ref|YP_709081.1| hypothetical protein RHA1_ro11276 ... 39.7 0.68
gi|226349877|ref|YP_002776990.1| hypothetical protein ROP_pROB02... 37.7 3.1
gi|186474026|ref|YP_001861368.1| PAS/PAC sensor hybrid histidine... 36.2 8.6
>gi|15610787|ref|NP_218168.1| hypothetical protein Rv3651 [Mycobacterium tuberculosis H37Rv]
gi|15843263|ref|NP_338300.1| hypothetical protein MT3753 [Mycobacterium tuberculosis CDC1551]
gi|31794821|ref|NP_857314.1| hypothetical protein Mb3675 [Mycobacterium bovis AF2122/97]
70 more sequence titles
Length=345
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/345 (100%), Positives = 345/345 (100%), Gaps = 0/345 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI
Sbjct 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT
Sbjct 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR
Sbjct 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL
Sbjct 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD
Sbjct 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
Query 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATDVTT 345
WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATDVTT
Sbjct 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATDVTT 345
>gi|289445245|ref|ZP_06434989.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289418203|gb|EFD15404.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=345
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/345 (99%), Positives = 345/345 (100%), Gaps = 0/345 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI
Sbjct 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT
Sbjct 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR
Sbjct 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL
Sbjct 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVI+AMTRDLANGSASHVLRLPGHDVD
Sbjct 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVINAMTRDLANGSASHVLRLPGHDVD 300
Query 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATDVTT 345
WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATDVTT
Sbjct 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATDVTT 345
>gi|240173312|ref|ZP_04751970.1| hypothetical protein MkanA1_28626 [Mycobacterium kansasii ATCC
12478]
Length=345
Score = 565 bits (1456), Expect = 4e-159, Method: Compositional matrix adjust.
Identities = 273/340 (81%), Positives = 306/340 (90%), Gaps = 0/340 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
MTHDWLLVETLGDEPAVVA+GR+LK LVPITTFLRRSP+L+AVRTAI E+LQTGQSL+SI
Sbjct 1 MTHDWLLVETLGDEPAVVAQGRQLKNLVPITTFLRRSPHLSAVRTAITESLQTGQSLSSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK DRVI TEPV+M+DGR+HGVQVW GP AEPP+RPIPGPLKWDLT GVATDT ESL
Sbjct 61 TPKSDRVICTEPVVMSDGRVHGVQVWIGPAGAEPPERPIPGPLKWDLTLGVATDTRESLI 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSGKNP+VE+TYGRAFAEDLP+REL+PNET+VLAM VK +PG+TLCS WDLTDWQG PIR
Sbjct 121 NSGKNPDVEVTYGRAFAEDLPSRELSPNETRVLAMVVKPEPGQTLCSTWDLTDWQGNPIR 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
+GF ARSALEPGP+GR+HLVARA+NWRAE K P VPVDDLAQ+IL GLAQAGVHRALVDL
Sbjct 181 LGFTARSALEPGPDGREHLVARAINWRAELKGPLVPVDDLAQKILDGLAQAGVHRALVDL 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
TWTLLKWLD+PC FYDWR + D PR+HPDDQ +I AMT++ ANG+ S VLRLPG+D D
Sbjct 241 NTWTLLKWLDEPCPFYDWRVNEPDKPRVHPDDQELIAAMTKEFANGATSGVLRLPGNDTD 300
Query 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKA 340
WVPVHVTVNRIELEP+TFAGL++LRLPT ELADAGLP A
Sbjct 301 WVPVHVTVNRIELEPETFAGLISLRLPTAAELADAGLPTA 340
>gi|254821831|ref|ZP_05226832.1| hypothetical protein MintA_17997 [Mycobacterium intracellulare
ATCC 13950]
Length=341
Score = 556 bits (1433), Expect = 2e-156, Method: Compositional matrix adjust.
Identities = 264/339 (78%), Positives = 301/339 (89%), Gaps = 0/339 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
M HDWLLVETLG +P VVA+GR+LK LVPITTFLRRSPYLAAVRTAIAE++QTGQ+LTSI
Sbjct 1 MAHDWLLVETLGGDPTVVAQGRQLKNLVPITTFLRRSPYLAAVRTAIAESVQTGQALTSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK DR+IRTEPV+M+DG +HGV VW+GP+D +PP+RPIPGPLKWDLT GVATDT ESL
Sbjct 61 TPKRDRIIRTEPVVMSDGLIHGVHVWTGPSDIDPPERPIPGPLKWDLTMGVATDTRESLI 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSGKNPEVE+T+GRAFAEDLP+RELNPNET+VLAMAVKAKPG+TLCS WDLTDW+G IR
Sbjct 121 NSGKNPEVEVTFGRAFAEDLPSRELNPNETKVLAMAVKAKPGQTLCSTWDLTDWRGKAIR 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
IGFVAR+ LEPGP+GR+HLVARA+NW++E K PAV DDLAQRIL GLAQAGVHRAL+DL
Sbjct 181 IGFVARTILEPGPDGREHLVARAINWQSELKGPAVSTDDLAQRILSGLAQAGVHRALIDL 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
WTLLKWLD+PC+FYDWR S PR+HPDDQ V+ MTR+ G S VLRLPGHD D
Sbjct 241 NNWTLLKWLDEPCTFYDWRSSETGKPRVHPDDQDVMSTMTREFGGGPTSRVLRLPGHDAD 300
Query 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPK 339
WVPVHVTVNR+ELEPDT+AGLV+LRLPTD+ELA AGLP+
Sbjct 301 WVPVHVTVNRVELEPDTYAGLVSLRLPTDDELAAAGLPQ 339
>gi|296166707|ref|ZP_06849132.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897972|gb|EFG77553.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=345
Score = 555 bits (1429), Expect = 6e-156, Method: Compositional matrix adjust.
Identities = 264/344 (77%), Positives = 301/344 (88%), Gaps = 0/344 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
M HDWLLVETLG EPAVVA+GR+LK LVPITTFLRRSPYLAAVRTAIAET++TGQSLTSI
Sbjct 1 MGHDWLLVETLGGEPAVVAQGRQLKNLVPITTFLRRSPYLAAVRTAIAETVKTGQSLTSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK DRVIRTEPV+M+DG +HGV VW+GP D +PP+RP PGPLKWDLT GVATDT ESL
Sbjct 61 TPKRDRVIRTEPVVMSDGYIHGVHVWTGPADVDPPERPTPGPLKWDLTMGVATDTRESLA 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSGKNPEVE+T+GRAFAEDLP+RELNPNET+VLAMAVKA+P +TLCS WDLTDWQG P+R
Sbjct 121 NSGKNPEVEVTFGRAFAEDLPSRELNPNETKVLAMAVKAEPDQTLCSTWDLTDWQGQPMR 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
IGFVAR+ LE GP+GRDHLVARA+NWRAE K P V DDLAQRIL GLAQAGVHRAL+DL
Sbjct 181 IGFVARTGLEAGPDGRDHLVARAINWRAELKGPEVSTDDLAQRILSGLAQAGVHRALIDL 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
K W LLKWLD+PC+FYDWR S P++HPDDQH++ +MT + A G+ S VLR+PGHD +
Sbjct 241 KNWALLKWLDEPCTFYDWRGSETGKPKVHPDDQHLVSSMTEEFARGATSRVLRMPGHDDE 300
Query 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATDVT 344
WVPVHVTVNR+E+EPD +AGLV+LRLP+DEELA AGL A D T
Sbjct 301 WVPVHVTVNRVEIEPDVYAGLVSLRLPSDEELAAAGLSGAPDPT 344
>gi|183985110|ref|YP_001853401.1| hypothetical protein MMAR_5142 [Mycobacterium marinum M]
gi|183178436|gb|ACC43546.1| conserved protein [Mycobacterium marinum M]
Length=343
Score = 554 bits (1428), Expect = 6e-156, Method: Compositional matrix adjust.
Identities = 266/343 (78%), Positives = 303/343 (89%), Gaps = 1/343 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
MTHDWLLVETLGDEPAVVA+GR+LK LVPIT FLRRSPYL+AVRTAIAE+LQTGQSLTSI
Sbjct 1 MTHDWLLVETLGDEPAVVAQGRQLKSLVPITKFLRRSPYLSAVRTAIAESLQTGQSLTSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK DRVIRTEPV+M+DGR+HGV VW+GP + EPP+RP PGPLKW+LT GVATDT ESL
Sbjct 61 TPKSDRVIRTEPVVMSDGRIHGVHVWTGPANEEPPERPTPGPLKWNLTLGVATDTRESLA 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSGKNP++E+TYGRAFAEDLP+RELNPNET+ LAM VK +PG+TLCS WDLTDW+G PIR
Sbjct 121 NSGKNPDLEVTYGRAFAEDLPSRELNPNETKFLAMVVKPEPGQTLCSTWDLTDWRGKPIR 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
IGF RSALE GP+GR+HLVARA+NWRAE K P VP+DDLA+RIL GLAQ GVHRALVDL
Sbjct 181 IGFAVRSALEEGPDGREHLVARAINWRAEQKEPVVPIDDLARRILNGLAQVGVHRALVDL 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
W+LLKWLD+PCSFYDWRRS DGPR+HPDD+ VI +MT A G+AS VLRLPG D
Sbjct 241 NNWSLLKWLDEPCSFYDWRRSEEDGPRVHPDDRPVIASMTDKFAKGAASAVLRLPGRGAD 300
Query 301 -WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATD 342
WVPVHVTVNRIELEP+TFAGL++LRLP++EELA+AGLP A +
Sbjct 301 EWVPVHVTVNRIELEPETFAGLISLRLPSEEELAEAGLPAAAE 343
>gi|254773483|ref|ZP_05214999.1| hypothetical protein MaviaA2_02230 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|336460802|gb|EGO39687.1| hypothetical protein MAPs_36220 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=345
Score = 553 bits (1424), Expect = 2e-155, Method: Compositional matrix adjust.
Identities = 264/344 (77%), Positives = 302/344 (88%), Gaps = 0/344 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
M HDWLLVETLG +P VVA+GR+LK LVPITTFLRRSPYL+AVRTAIAE++QTGQ+LTSI
Sbjct 1 MAHDWLLVETLGGDPTVVAQGRQLKNLVPITTFLRRSPYLSAVRTAIAESVQTGQALTSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK DRVIRTEPV+M+DG +HGV VW+GP+D EPP+RPIPGPLKWDLT GVATDT ESL
Sbjct 61 TPKRDRVIRTEPVVMSDGFIHGVHVWTGPSDIEPPERPIPGPLKWDLTLGVATDTRESLI 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSGKNPEVE+T+GRAFAEDLP+RELNPNET+VLAMAVKAKP +TLCS WDLTDW+G IR
Sbjct 121 NSGKNPEVEVTFGRAFAEDLPSRELNPNETKVLAMAVKAKPDQTLCSTWDLTDWRGEAIR 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
IGFVAR+ LEPGP+GR+HLVARA+NW+AE K PAV DDLAQRIL GLAQAGVHRAL+DL
Sbjct 181 IGFVARTILEPGPDGREHLVARAINWQAEQKGPAVSTDDLAQRILSGLAQAGVHRALIDL 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
WTLLKWLD+PC+FYDWR S PR+HPDD V+ AMT + + G+ S VLRL GHD D
Sbjct 241 NNWTLLKWLDEPCTFYDWRSSETGKPRVHPDDHAVMSAMTEEFSGGATSRVLRLAGHDGD 300
Query 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATDVT 344
WVPVH+TVNR+ELEPD +AGLV+LRLPT+EELA AGLP+AT T
Sbjct 301 WVPVHITVNRVELEPDAYAGLVSLRLPTEEELAAAGLPQATGGT 344
>gi|118619395|ref|YP_907727.1| hypothetical protein MUL_4226 [Mycobacterium ulcerans Agy99]
gi|118571505|gb|ABL06256.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=343
Score = 552 bits (1423), Expect = 2e-155, Method: Compositional matrix adjust.
Identities = 265/343 (78%), Positives = 302/343 (89%), Gaps = 1/343 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
MTHDWLLVETLGDEPAVVA+GR+LK LVPIT FLRRSPYL+AVRTAIAE+LQTGQSLTSI
Sbjct 1 MTHDWLLVETLGDEPAVVAQGRQLKSLVPITKFLRRSPYLSAVRTAIAESLQTGQSLTSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK DRVIRTEPV+M+DGR+HGV VW+GP + EPP+RP PGPLKW+LT GVATDT ESL
Sbjct 61 TPKSDRVIRTEPVVMSDGRIHGVHVWTGPANEEPPERPTPGPLKWNLTLGVATDTRESLA 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSGKNP++E+TYGRAFAEDLP+RELNPNET+ LAM VK +PG+TLCS WDLTDW+G PIR
Sbjct 121 NSGKNPDLEVTYGRAFAEDLPSRELNPNETKFLAMVVKPEPGQTLCSTWDLTDWRGKPIR 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
IGF SALE GP+GR+HLVARA+NWRAE K P VP+DDLA+RIL GLAQ GVHRALVDL
Sbjct 181 IGFAVHSALEEGPDGREHLVARAINWRAEQKEPVVPIDDLARRILNGLAQVGVHRALVDL 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
W+LLKWLD+PCSFYDWRRS DGPR+HPDD+ VI +MT A G+AS VLRLPG D
Sbjct 241 NNWSLLKWLDEPCSFYDWRRSEEDGPRVHPDDRPVITSMTDKFAKGAASAVLRLPGRGAD 300
Query 301 -WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATD 342
WVPVHVTVNRIELEP+TFAGL++LRLP++EELA+AGLP A +
Sbjct 301 EWVPVHVTVNRIELEPETFAGLISLRLPSEEELAEAGLPAAAE 343
>gi|342862012|ref|ZP_08718656.1| hypothetical protein MCOL_24095 [Mycobacterium colombiense CECT
3035]
gi|342130552|gb|EGT83861.1| hypothetical protein MCOL_24095 [Mycobacterium colombiense CECT
3035]
Length=345
Score = 551 bits (1420), Expect = 6e-155, Method: Compositional matrix adjust.
Identities = 262/342 (77%), Positives = 302/342 (89%), Gaps = 0/342 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
M HDWLLVETLG +P VVA+GR+LK LVPITTFLRRSPYLAAVRTAIAE++QTGQ+LTSI
Sbjct 1 MAHDWLLVETLGGDPTVVAQGRQLKNLVPITTFLRRSPYLAAVRTAIAESVQTGQALTSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK DR+IRTEPV+M+DG +HGV VW+GP DAEPP+RPIPGPLKWDLT GVATDT ESL
Sbjct 61 TPKRDRIIRTEPVVMSDGFIHGVHVWTGPADAEPPERPIPGPLKWDLTLGVATDTRESLI 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSGKNPEVE+T+GRAFAEDLP+RELNPNET+VLAMAVKAKP +TLCS WDLTDW+G IR
Sbjct 121 NSGKNPEVEVTFGRAFAEDLPSRELNPNETKVLAMAVKAKPDQTLCSTWDLTDWRGEAIR 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
IGFVAR+ LEPGP+GR+HLVARAMNW++E K P V DDLAQRIL GLAQAGVHRAL+DL
Sbjct 181 IGFVARTILEPGPDGREHLVARAMNWQSELKGPEVSTDDLAQRILSGLAQAGVHRALIDL 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
TW+LLKWLD+PC+FYDWR S PR+HPDD ++ +MTR+ + G+ S VLR+PGH+ D
Sbjct 241 NTWSLLKWLDEPCTFYDWRSSETGTPRVHPDDHDLMSSMTREFSGGATSRVLRMPGHNGD 300
Query 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATD 342
WVPVHVTVNR+ELEPDT+AGLV+LRLPTDEELA AGL + D
Sbjct 301 WVPVHVTVNRVELEPDTYAGLVSLRLPTDEELATAGLSPSPD 342
>gi|41406519|ref|NP_959355.1| hypothetical protein MAP0421c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394868|gb|AAS02738.1| hypothetical protein MAP_0421c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=345
Score = 550 bits (1418), Expect = 1e-154, Method: Compositional matrix adjust.
Identities = 263/344 (77%), Positives = 301/344 (88%), Gaps = 0/344 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
M HDWLLVETLG +P VVA+GR+LK LVPITTFLRRSPYL+AVRTAIAE++QTGQ+LTSI
Sbjct 1 MAHDWLLVETLGGDPTVVAQGRQLKNLVPITTFLRRSPYLSAVRTAIAESVQTGQALTSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK DRVIRTEPV+M+DG +HGV VW+GP+D EPP+RPIPGPLKWDLT GVATDT ESL
Sbjct 61 TPKRDRVIRTEPVVMSDGFIHGVHVWTGPSDIEPPERPIPGPLKWDLTLGVATDTRESLI 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSGKNPEVE+T+GRAFAEDLP+RELNPNET+VLAMAVKAKP +TLCS WDLTDW+G IR
Sbjct 121 NSGKNPEVEVTFGRAFAEDLPSRELNPNETKVLAMAVKAKPDQTLCSTWDLTDWRGEAIR 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
IGFVAR+ LEPGP+ R+HLVARA+NW+AE K PAV DDLAQRIL GLAQAGVHRAL+DL
Sbjct 181 IGFVARTILEPGPDSREHLVARAINWQAEQKGPAVSTDDLAQRILSGLAQAGVHRALIDL 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
WTLLKWLD+PC+FYDWR S PR+HPDD V+ AMT + + G+ S VLRL GHD D
Sbjct 241 NNWTLLKWLDEPCTFYDWRSSETGKPRVHPDDHAVMSAMTEEFSGGATSRVLRLAGHDGD 300
Query 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATDVT 344
WVPVH+TVNR+ELEPD +AGLV+LRLPT+EELA AGLP+AT T
Sbjct 301 WVPVHITVNRVELEPDAYAGLVSLRLPTEEELAAAGLPQATGGT 344
>gi|118464644|ref|YP_879795.1| hypothetical protein MAV_0513 [Mycobacterium avium 104]
gi|118165931|gb|ABK66828.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=328
Score = 523 bits (1347), Expect = 2e-146, Method: Compositional matrix adjust.
Identities = 249/327 (77%), Positives = 287/327 (88%), Gaps = 0/327 (0%)
Query 18 VARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSITPKHDRVIRTEPVIMTD 77
+A+GR+LK LVPITTFLRRSPYL+AVRTAIAE++QT Q+LTSITPK DRVIRTEPV+M+D
Sbjct 1 MAQGRQLKNLVPITTFLRRSPYLSAVRTAIAESVQTAQALTSITPKRDRVIRTEPVVMSD 60
Query 78 GRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLTNSGKNPEVEITYGRAFA 137
G +HGV VW+GP+D EPP+RPIPGPLKWDLT GVATDT ESL NSGKNPEVE+T+GRAFA
Sbjct 61 GFIHGVHVWTGPSDIEPPERPIPGPLKWDLTLGVATDTRESLINSGKNPEVEVTFGRAFA 120
Query 138 EDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIRIGFVARSALEPGPNGRD 197
EDLP+RELNPNET+VLAMAVKAKP +TLCS WDLTDW+G IRIGFVAR+ LEPGP+GR+
Sbjct 121 EDLPSRELNPNETKVLAMAVKAKPDQTLCSTWDLTDWRGEAIRIGFVARTILEPGPDGRE 180
Query 198 HLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDLKTWTLLKWLDQPCSFYD 257
HLVARA+NW+AE K PAV DDLAQRIL GLAQAGVHRAL+DL WTLLKWLD+PC+FYD
Sbjct 181 HLVARAINWQAEQKGPAVSTDDLAQRILSGLAQAGVHRALIDLNNWTLLKWLDEPCTFYD 240
Query 258 WRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVDWVPVHVTVNRIELEPDT 317
WR S PR+HPDD V+ AMT + + G+ S VLRL GHD DWVPVH+TVNR+ELEPD
Sbjct 241 WRSSETGKPRVHPDDHAVMSAMTEEFSGGATSRVLRLAGHDGDWVPVHITVNRVELEPDA 300
Query 318 FAGLVALRLPTDEELADAGLPKATDVT 344
+AGLV+LRLPT+EELA AGLP+AT T
Sbjct 301 YAGLVSLRLPTEEELAAAGLPQATGGT 327
>gi|333992575|ref|YP_004525189.1| hypothetical protein JDM601_3936 [Mycobacterium sp. JDM601]
gi|333488544|gb|AEF37936.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=343
Score = 465 bits (1197), Expect = 5e-129, Method: Compositional matrix adjust.
Identities = 232/344 (68%), Positives = 270/344 (79%), Gaps = 1/344 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
M HDWLLVETLG EPAVVA+GR++K LVPIT FLRRSP+LAA+RTAIAET++TGQSL SI
Sbjct 1 MAHDWLLVETLGGEPAVVAQGRQVKNLVPITQFLRRSPHLAAIRTAIAETMRTGQSLVSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPKHDRVIRTEPV+M+DGR+HGV VWSGP D EPP+RP PGPLKWDLT GVATDT ESL
Sbjct 61 TPKHDRVIRTEPVVMSDGRVHGVHVWSGPADVEPPERPTPGPLKWDLTLGVATDTEESLA 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSGK+P VE T+GRAFAE+LP R+ NPNE +VLA+A++A+P KT+CS WD+TD++G IR
Sbjct 121 NSGKDPTVEATHGRAFAEELPTRDFNPNENKVLALAIRAEPDKTICSSWDVTDFRGDTIR 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
+GFVAR+ E G R+HLVAR MNWR + D LAQ+IL GLAQ GVHRA+VDL
Sbjct 181 VGFVARTGWESGLGRREHLVARGMNWRGQLDGTVHRPDFLAQQILHGLAQPGVHRAMVDL 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
W LLKWLD PC FYDW R D PR+HPDD+ + MT D G A+ VLRL D
Sbjct 241 IDWRLLKWLDDPCPFYDW-RGTVDAPRVHPDDEARVARMTTDFTAGPATGVLRLRQSDGG 299
Query 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATDVT 344
W PVHVTVNRIELE T+AGL+ALRLPTD ELA+AGL D +
Sbjct 300 WAPVHVTVNRIELEAGTYAGLIALRLPTDGELAEAGLDPPADAS 343
>gi|126437750|ref|YP_001073441.1| hypothetical protein Mjls_5186 [Mycobacterium sp. JLS]
gi|126237550|gb|ABO00951.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=360
Score = 427 bits (1098), Expect = 1e-117, Method: Compositional matrix adjust.
Identities = 214/342 (63%), Positives = 263/342 (77%), Gaps = 6/342 (1%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
M+HDWLLVETLG EP VVA+GR +K+VPI+ FLRR+PYL AV+TAIAET++ GQ L+SI
Sbjct 17 MSHDWLLVETLGSEPVVVAQGRRAEKMVPISAFLRRNPYLMAVQTAIAETVRAGQGLSSI 76
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK+DRVIRTE V M+DGR+HGV VW GP + EPP+RP+PGPLKWDLT G+AT T +SL
Sbjct 77 TPKNDRVIRTEVVQMSDGRIHGVHVWIGPPNLEPPERPLPGPLKWDLTTGIATATTQSLA 136
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSG++P+ E T+GRA AEDLP R+LNP+ET+VL+MAV+ +PG+T CS WD+TD QG PI
Sbjct 137 NSGRDPDAEDTHGRALAEDLPMRDLNPSETKVLSMAVRPEPGQTFCSTWDVTDHQGAPIA 196
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPA-VPVDDLAQRILIGLAQAGVHRALVD 239
+GF AR+ LE NG + LV RAMNWRAE + P P D LAQRIL GL+Q G+HRALVD
Sbjct 197 VGFSARALLEAQDNGAERLVCRAMNWRAEREGPEHPPPDHLAQRILDGLSQTGLHRALVD 256
Query 240 LKTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDV 299
L W LLKWLD P FYDWR + +HPDD + M +LA+ + + V+RL D
Sbjct 257 LDNWKLLKWLDPPAPFYDWRAN-----EVHPDDDAHLARMITELADQATTAVMRLRTADG 311
Query 300 DWVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKAT 341
DW PVHVT+NRIELEP+TFAGL ++RLPTDEEL +A L T
Sbjct 312 DWAPVHVTINRIELEPETFAGLASVRLPTDEELREARLAPTT 353
>gi|108801763|ref|YP_641960.1| hypothetical protein Mmcs_4800 [Mycobacterium sp. MCS]
gi|119870914|ref|YP_940866.1| hypothetical protein Mkms_4886 [Mycobacterium sp. KMS]
gi|108772182|gb|ABG10904.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119697003|gb|ABL94076.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=360
Score = 425 bits (1092), Expect = 7e-117, Method: Compositional matrix adjust.
Identities = 213/342 (63%), Positives = 262/342 (77%), Gaps = 6/342 (1%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
M+HDWLLVETLG EP VVA+GR +K+VPI+ FLRR+P+L AV+TAIAET++ GQ L+SI
Sbjct 17 MSHDWLLVETLGSEPVVVAQGRRAEKMVPISAFLRRNPHLMAVQTAIAETVRAGQGLSSI 76
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK+DRVIRTE V M+DGR+HGV VW GP + EPP+RP+PGPLKWDLT G+AT T +SL
Sbjct 77 TPKNDRVIRTEVVQMSDGRIHGVHVWIGPPNLEPPERPLPGPLKWDLTTGIATATTQSLA 136
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSG++P+ E T+GRA AEDLP R+LNP+ET+VL+MAV+ +PG+T CS WD+TD QG PI
Sbjct 137 NSGRDPDAEDTHGRALAEDLPTRDLNPSETKVLSMAVRPEPGQTFCSTWDVTDHQGAPIA 196
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPA-VPVDDLAQRILIGLAQAGVHRALVD 239
+GF AR+ LE NG + LV RAMNWRAE + P P D LAQRIL GL+Q G+HRALVD
Sbjct 197 VGFSARALLEAQDNGAERLVCRAMNWRAEREGPEHPPPDHLAQRILDGLSQTGLHRALVD 256
Query 240 LKTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDV 299
L W LLKWLD P FYDWR + +HPDD + M +LA+ + + V+RL D
Sbjct 257 LDNWKLLKWLDPPAPFYDWRAN-----EVHPDDDAHLARMITELADQATTAVMRLRTADG 311
Query 300 DWVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKAT 341
DW PVHVT+NRIELEP+TFAGL +RLPTDEEL +A L T
Sbjct 312 DWAPVHVTINRIELEPETFAGLATVRLPTDEELREARLSPTT 353
>gi|118472244|ref|YP_890383.1| hypothetical protein MSMEG_6163 [Mycobacterium smegmatis str.
MC2 155]
gi|118173531|gb|ABK74427.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=338
Score = 415 bits (1067), Expect = 4e-114, Method: Compositional matrix adjust.
Identities = 202/338 (60%), Positives = 253/338 (75%), Gaps = 2/338 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
MTHDWLLVETLG EPAVVARG + K L+PI+ FLRR+P L A+++AI ET++ GQ L+SI
Sbjct 1 MTHDWLLVETLGSEPAVVARGSQTKNLIPISVFLRRNPNLMAIQSAIGETVRAGQGLSSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK RVIRTE V MTDG +HGV VW GP +AEPP+R IPGPL WDLT GVATDTPES+
Sbjct 61 TPKTKRVIRTEVVRMTDGCIHGVHVWVGPANAEPPERLIPGPLVWDLTTGVATDTPESIF 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
NSG +P VE T GR FA+DLP R+LNP+E +VL++ + +PG T+C+ WD+TD++G P+
Sbjct 121 NSGMDPAVEATDGRTFADDLPTRDLNPSEAKVLSLVINPQPGTTICTTWDVTDFRGEPVT 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
+GFV+R+ +E GP+GRD V RAMNWR+E A VP D LAQRIL GLA+ VHRALVDL
Sbjct 181 VGFVSRTMVETGPDGRDRTVCRAMNWRSERDAAEVPADYLAQRILDGLARPDVHRALVDL 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
K W LLKWLD+P F DWR R+HPDD ++ M + A G + VLR+
Sbjct 241 KNWKLLKWLDEPAPFIDWRNREGGASRIHPDDTAHMERMAAEFATGFTTAVLRMRTSGGG 300
Query 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEEL--ADAG 336
W VH+T+NR+ELEP T+AGL+ALRLP+D E+ AD+G
Sbjct 301 WQSVHMTINRVELEPGTYAGLLALRLPSDAEIVGADSG 338
>gi|120406348|ref|YP_956177.1| hypothetical protein Mvan_5400 [Mycobacterium vanbaalenii PYR-1]
gi|119959166|gb|ABM16171.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=360
Score = 382 bits (980), Expect = 7e-104, Method: Compositional matrix adjust.
Identities = 195/344 (57%), Positives = 242/344 (71%), Gaps = 0/344 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
MTHDWLLVETLG EP VVA G K LVP+ T+LRRSP+L A++TAI ET++ G L+SI
Sbjct 1 MTHDWLLVETLGTEPVVVAHGAYTKNLVPVATYLRRSPHLMAIQTAIGETVRGGGGLSSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK+DRVIRTE V M+DGR+HGVQVW G D PP+RP+ GPL WDLT G ATDT ESL
Sbjct 61 TPKNDRVIRTEVVQMSDGRIHGVQVWVGAPDESPPERPLVGPLLWDLTAGTATDTTESLR 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
G +P + T+GRAFA+DLP R+LNPNE +VL+M +K + G TLC+ WD+TD++G PI
Sbjct 121 VGGWDPANQSTHGRAFADDLPRRDLNPNEAEVLSMVIKPEAGVTLCNTWDVTDYRGQPIT 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
+GFVARS E +G + L+ RAMNWR+ + ++ D L QRI+ GL Q GV+RALVD
Sbjct 181 VGFVARSLPEALEDGGERLICRAMNWRSVREGASLQHDLLGQRIVDGLRQPGVYRALVDP 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
+ WTLLKWLD+P F D + +HP D HV+ AM A G AS VLRL GH+
Sbjct 241 RNWTLLKWLDEPVPFLDRHANRESEQAIHPQDMHVMSAMADQFATGVASGVLRLVGHNGG 300
Query 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGLPKATDVT 344
W PVHVTVNR++L +AGL +LR PT EL AGL A + T
Sbjct 301 WTPVHVTVNRVKLGKGVYAGLASLRKPTPAELTAAGLDCAPEST 344
>gi|315446278|ref|YP_004079157.1| hypothetical protein Mspyr1_47820 [Mycobacterium sp. Spyr1]
gi|315264581|gb|ADU01323.1| hypothetical protein Mspyr1_47820 [Mycobacterium sp. Spyr1]
Length=360
Score = 377 bits (967), Expect = 2e-102, Method: Compositional matrix adjust.
Identities = 192/337 (57%), Positives = 239/337 (71%), Gaps = 0/337 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
MTHDW+LVETLG EP VVA G K L+PI TFLRR+P+L A++TAIAET++ LTSI
Sbjct 1 MTHDWMLVETLGTEPVVVAHGDHTKDLIPIGTFLRRNPHLMAIQTAIAETVRAATGLTSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK+DRVIRTE V M+DGR+HGVQ+W G D P+RP+ GPL WDL G ATDT ESL
Sbjct 61 TPKNDRVIRTEVVQMSDGRIHGVQLWLGAPDETAPERPLVGPLLWDLEAGTATDTTESLQ 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
G +P + GRAFA+DLP R+LNPNET+V++M ++ +PG T+C+ WD+TD++G I
Sbjct 121 VGGWDPARQARRGRAFADDLPRRDLNPNETEVISMVIRPEPGTTICNTWDVTDYRGEAIT 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
+GFVARS E G +GR+ L+ RAMNWR+ + + D LAQRIL GLA GVHRALVD
Sbjct 181 VGFVARSLPEVGDDGRERLICRAMNWRSVREGAGIQHDVLAQRILDGLAVPGVHRALVDP 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
K WTLLKWLD P F++WR +HP D +DAM + A+G+ + VLRL G+
Sbjct 241 KHWTLLKWLDDPVPFFNWRAGGLRSDVVHPQDMPELDAMATEFADGATARVLRLAGNQGG 300
Query 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGL 337
WVPVHVT+NR+ L AGL LRLPT ELADA L
Sbjct 301 WVPVHVTINRVPLGKGIDAGLATLRLPTPAELADARL 337
>gi|145221982|ref|YP_001132660.1| hypothetical protein Mflv_1390 [Mycobacterium gilvum PYR-GCK]
gi|145214468|gb|ABP43872.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=360
Score = 377 bits (967), Expect = 2e-102, Method: Compositional matrix adjust.
Identities = 192/337 (57%), Positives = 239/337 (71%), Gaps = 0/337 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
MTHDW+LVETLG EP VVA G K L+PI TFLRR+P+L A++TAIAET++ LTSI
Sbjct 1 MTHDWMLVETLGTEPVVVAHGDHTKDLIPIGTFLRRNPHLMAIQTAIAETVRAATGLTSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TPK+DRVIRTE V M+DGR+HGVQ+W G D P+RP+ GPL WDL G ATDT ESL
Sbjct 61 TPKNDRVIRTEVVQMSDGRIHGVQLWLGAPDETAPERPLVGPLLWDLEAGTATDTTESLQ 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
G +P + GRAFA+DLP R+LNPNET+V++M ++ +PG T+C+ WD+TD++G I
Sbjct 121 VGGWDPARQARRGRAFADDLPRRDLNPNETEVISMVIRPEPGTTICNTWDVTDYRGEAIT 180
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
+GFVARS E G +GR+ L+ RAMNWR+ + + D LAQRIL GLA GVHRALVD
Sbjct 181 VGFVARSLPEVGDDGRERLICRAMNWRSVREGAGIQHDVLAQRILDGLAVPGVHRALVDP 240
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
K WTLLKWLD P F++WR +HP D +DAM + A+G+ + VLRL G+
Sbjct 241 KHWTLLKWLDDPVPFFNWRAGGLRSDVVHPQDMPELDAMATEFADGATARVLRLAGNQGG 300
Query 301 WVPVHVTVNRIELEPDTFAGLVALRLPTDEELADAGL 337
WVPVHVT+NR+ L AGL LRLPT ELADA L
Sbjct 301 WVPVHVTINRVPLGRGIDAGLATLRLPTPAELADARL 337
>gi|169630747|ref|YP_001704396.1| hypothetical protein MAB_3668 [Mycobacterium abscessus ATCC 19977]
gi|169242714|emb|CAM63742.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=332
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/324 (35%), Positives = 170/324 (53%), Gaps = 2/324 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
M+ DW+L+ETLGDEP V+A G + + L P+ + LRR+ + + AIA+ +TG+ +
Sbjct 1 MSRDWMLLETLGDEPTVIAIGSQARNLAPLESVLRRNRHRPLIEAAIADCRRTGEVTAAF 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLT 120
TP DRV+ P+ M +HGV VW GP D +PP RP+ G DL + T T E
Sbjct 61 TPARDRVVHVHPISMDKANIHGVHVWFGPVDVDPPPRPLAGACLGDLDTSLTTLTAEYFE 120
Query 121 NSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
G +P+ + +A AE L +P T+++A V + T C D QG ++
Sbjct 121 VMGFDPQNR-SERQAIAEGLAPVLPSPRNTELMAHVVNPELDSTFCGTCLAADHQGNTLQ 179
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDL 240
+ + R++ E P G + R + R E + PA P LAQ+IL +A GVHR L+++
Sbjct 180 VHYAGRASKETDPAGAVARINRIICTRVENR-PAEPRVGLAQQILEAVATPGVHRLLMNV 238
Query 241 KTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGHDVD 300
T+ +LKW+D+P WR + +HPDD+ M +L GS + VLR+
Sbjct 239 DTFAVLKWIDEPYPDLAWRYNPDRPETIHPDDEASARRMRDELRAGSTTGVLRVRAISGG 298
Query 301 WVPVHVTVNRIELEPDTFAGLVAL 324
W+ + + + L + FA LV L
Sbjct 299 WLRLRASATKFALRDNAFAALVTL 322
>gi|169630746|ref|YP_001704395.1| hypothetical protein MAB_3667 [Mycobacterium abscessus ATCC 19977]
gi|169242713|emb|CAM63741.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=324
Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 108/328 (33%), Positives = 160/328 (49%), Gaps = 9/328 (2%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
M +WLL+ETLGDEP V+A G + + +VP++TFLRR+ L +R I + ++LT
Sbjct 1 MAREWLLLETLGDEPTVIASGSQPRNMVPLSTFLRRNRNLGLLRRVITAATKANKALTIG 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGV---ATDTPE 117
P D VI PV M DGR+HGV +W+G T G + + GV +
Sbjct 61 PPDSDSVIDVRPVAMPDGRVHGVWLWTGSTAPHTVPPAEGGAVVLNADTGVLRISDGAAL 120
Query 118 SLTNSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGT 177
++ + P EI+ + P NP ET VL + V A G T + W D G
Sbjct 121 AMGIAADEPHDEISMPELYRYLSP----NPGETDVLGLIVTATEGMTYSATWPGVDSDGK 176
Query 178 PIRIGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRAL 237
P F +R LEP +G + RA+N R AP VP+ L Q++L ++ G +RAL
Sbjct 177 PTLCHFASRLVLEPNGDGVPERLGRAINLRVGQPAPPVPL--LEQQVLEAASEPGAYRAL 234
Query 238 VDLKTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLRLPGH 297
V + + LLKW+D P + W ++HPDD+ ++ M + G+ V+R H
Sbjct 235 VMIASRKLLKWIDPPAPEWHWEFDPLGRAKVHPDDEANLNFMIDNSVFGATEAVIRFRCH 294
Query 298 DVDWVPVHVTVNRIELEPDTFAGLVALR 325
D W +H + L + L+ LR
Sbjct 295 DDSWESLHCATQVVRLNENATVALITLR 322
>gi|289441081|ref|ZP_06430825.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289571888|ref|ZP_06452115.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289748165|ref|ZP_06507543.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289755777|ref|ZP_06515155.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289414000|gb|EFD11240.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289545642|gb|EFD49290.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289688752|gb|EFD56181.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289696364|gb|EFD63793.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=116
Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/90 (93%), Positives = 85/90 (95%), Gaps = 0/90 (0%)
Query 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI
Sbjct 1 MTHDWLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSI 60
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPT 90
TPKHDRVIRTEPVIMTDGRM + V +G T
Sbjct 61 TPKHDRVIRTEPVIMTDGRMLPLLVVNGLT 90
>gi|312141898|ref|YP_004009234.1| hypothetical protein REQ_46050 [Rhodococcus equi 103S]
gi|311891237|emb|CBH50556.1| hypothetical protein REQ_46050 [Rhodococcus equi 103S]
Length=344
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/348 (30%), Positives = 159/348 (46%), Gaps = 21/348 (6%)
Query 1 MTHDWLLVETLGD-EPAVVARGRELKKLVPITTFLR-----RSPYLAAVRTAIAETLQT- 53
MT +WLL++T G EPA++ G K V + + R+ L +R+ + E +
Sbjct 1 MTPEWLLIDTFGGAEPALIGLGSTPKPFVALDRHFKTRRGQRNRSLDDIRSTVLEVMADP 60
Query 54 -GQSLTSITPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVA 112
+ + T D I P++ ++GR+HG+ +W G E P R G ++LT G A
Sbjct 61 HDRPIDRTTDDGDHRIVAVPLLNSEGRLHGIHLWRGGVSDELPRRDPVGAWHFNLTAGTA 120
Query 113 TDTPESLTNSGKNPE---VEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIW 169
+ + + G PE E AF + N +E Q LA V+++PG ++W
Sbjct 121 SGSEDLFDLYGVAPEDRRSEAALSGAFNRLV----TNHDEGQALAKIVQSEPGTEHQAVW 176
Query 170 DLTDWQGTPIRIGFVARSALE-PGPNGRDHLVARAMNWR---AETKAPAVPVDDLAQRIL 225
+ G F R E P P+ ++ R + AE + A P L R+L
Sbjct 177 KVRRDDGVERAAHFSCRMLDERPEPDAPRVVILRGVTHDIGPAEHVSSAPPPVILEHRVL 236
Query 226 IGLAQAGVHRALVDLKTWTLLKWLDQPCSFYDWRRSAAD-GPRLHPDDQHVIDAMTRDLA 284
+ G + A VDLK TL+KW +QP W + + P +HPDD + AM +DLA
Sbjct 237 DAVLAPGHYHAYVDLKRLTLIKWRNQPMPGIAWGNAVGEPKPAIHPDDLPLARAMAKDLA 296
Query 285 NGSASHVLRLPGHDVDWVPVHVTVNRIELEPDTFAGLVAL-RLPTDEE 331
+ V+R G D W P+H++V + + T GLV + PT E
Sbjct 297 HRKVEGVIRCRGLDGAWKPLHLSVALMAFDESTHGGLVTVTEAPTGHE 344
>gi|325672832|ref|ZP_08152526.1| hypothetical protein HMPREF0724_10307 [Rhodococcus equi ATCC
33707]
gi|325556085|gb|EGD25753.1| hypothetical protein HMPREF0724_10307 [Rhodococcus equi ATCC
33707]
Length=380
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/340 (30%), Positives = 156/340 (46%), Gaps = 20/340 (5%)
Query 1 MTHDWLLVETLGD-EPAVVARGRELKKLVPITTFLR-----RSPYLAAVRTAIAETLQT- 53
MT +WLL++T G EPA++ G K V + + R+ L +R+ + E +
Sbjct 37 MTPEWLLIDTFGGAEPALIGLGSTPKPFVALDRHFKTRRGQRNRSLDDIRSTVLEVMADP 96
Query 54 -GQSLTSITPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVA 112
+ + T D I P++ ++GR+HG+ +W G E P R G ++LT G A
Sbjct 97 HDRPIDRTTDDGDHRIVAVPLLNSEGRLHGIHLWRGGVSDELPRRDPVGAWHFNLTAGTA 156
Query 113 TDTPESLTNSGKNPE---VEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIW 169
+ + + G PE E AF + N +E Q LA V+++PG ++W
Sbjct 157 SGSEDLFDLYGVAPEDRRSEAALSGAFNRLV----TNHDEGQALAKIVQSEPGTEHQAVW 212
Query 170 DLTDWQGTPIRIGFVARSALE-PGPNGRDHLVARAMNWR---AETKAPAVPVDDLAQRIL 225
+ G F R E P P+ ++ R + AE + A P L R+L
Sbjct 213 KVRRDDGVERAAHFSCRMLDERPEPDAPRVVILRGVTHDIGPAEHVSSAPPPVILEHRVL 272
Query 226 IGLAQAGVHRALVDLKTWTLLKWLDQPCSFYDWRRSAAD-GPRLHPDDQHVIDAMTRDLA 284
+ G + A VDLK TL+KW +QP W + + P +HPDD + AM +DLA
Sbjct 273 DAVLAPGHYHAYVDLKRLTLIKWRNQPMPGIAWGNAVGEPKPAIHPDDLPLARAMAKDLA 332
Query 285 NGSASHVLRLPGHDVDWVPVHVTVNRIELEPDTFAGLVAL 324
+ V+R G D W P+H++V + + T GLV +
Sbjct 333 HRKVEGVIRCRGLDGAWKPLHLSVALMAFDESTHGGLVTV 372
>gi|226334778|ref|YP_002784450.1| hypothetical protein ROP_pKNR-00060 [Rhodococcus opacus B4]
gi|226245998|dbj|BAH56098.1| hypothetical protein [Rhodococcus opacus B4]
Length=334
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/331 (28%), Positives = 144/331 (44%), Gaps = 8/331 (2%)
Query 1 MTHDWLLVETLGDE-PAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTS 59
M WLLV T G P++V +GR K VP+ ++ A +AI E + +
Sbjct 1 MATKWLLVSTFGGAVPSIVGQGRTPKPFVPLEQVIKSRRSFADATSAITEVMAHPTKIDR 60
Query 60 ITPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESL 119
++ R + +P+ +GR+H + +W G + + R G ++LT + + +
Sbjct 61 LSSDGLRRVIADPLCTFEGRLHAIYLWVGSAEEKVAQRDPAGAWYFNLTDFKVSGSDDLF 120
Query 120 TNSGKNPEVEITYGRAFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPI 179
G PE + A A + +E LA VK+ PG ++W + G
Sbjct 121 DLYGVAPENRRSEA-AMAGAFDRLDTGVDEGHALAKIVKSTPGMEHQAVWTVKRDDGARR 179
Query 180 RIGFVARSALE-PGPNG-RDHLVARAMNWR---AETKAPAVPVDDLAQRILIGLAQAGVH 234
F R+ E P PN R ++ R + A+ A P L R+L + G +
Sbjct 180 AAHFSCRAVEERPDPNSDRKVVILRGVTHDIGPADDVPTAPPPVILEHRVLDAKLKPGEY 239
Query 235 RALVDLKTWTLLKWLDQPCSFYDWRRSAAD-GPRLHPDDQHVIDAMTRDLANGSASHVLR 293
A VD K +LLKW P W + P +HPDD V ++ DLA GS S V+R
Sbjct 240 LAYVDHKKLSLLKWRGNPMPGIAWEGGVGEPTPAMHPDDVEVARRLSADLARGSTSGVIR 299
Query 294 LPGHDVDWVPVHVTVNRIELEPDTFAGLVAL 324
G D +W P+H+ V+ + + T LV +
Sbjct 300 FRGLDGEWKPLHLEVSLMAFDQHTMGALVTV 330
>gi|317508399|ref|ZP_07966070.1| hypothetical protein HMPREF9336_02442 [Segniliparus rugosus ATCC
BAA-974]
gi|316253307|gb|EFV12706.1| hypothetical protein HMPREF9336_02442 [Segniliparus rugosus ATCC
BAA-974]
Length=345
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/317 (28%), Positives = 144/317 (46%), Gaps = 21/317 (6%)
Query 4 DWLLVETLGDEPAVVARGR-ELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSITP 62
+WLLV+TLG P+VV GR ++ L +TT L R+ L + A+ + +
Sbjct 6 EWLLVDTLGSAPSVVCVGRRQMAGLPELTTVLSRNASLRDLLAALGGIGDHVGEVRLVRG 65
Query 63 KHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVATDTPESLTNS 122
+ + + PV + DG++HG QVW G +PP RP+ G WD+ + + + ES
Sbjct 66 RKGQQLHIRPVALPDGQVHGAQVWIGKQGEQPPPRPLAGAWWWDVAKAESVEDEESF--- 122
Query 123 GKNPEVEITYGR--AFAEDLPARELNPNETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIR 180
+ Y R A A DL +E+ L + KPG+ SIW +R
Sbjct 123 -RTRAFPGGYRRHKAIAADLRMLVDPLDESTGLGFVLSGKPGEAYDSIWTHQSADAEYVR 181
Query 181 IGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRIL-IGLAQAGVHRAL-V 238
I F A +++ +G H+ N + ++ P + R++ + + G H AL +
Sbjct 182 IRFSAHISVD--ADGGRHVRGVDTNVDIDPRSWQHPRPTMIARVVSLATRRKGEHCALML 239
Query 239 DLKTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDL------ANGSASHVL 292
D + +TL +W + P + A P+LHP+D+ V+ ++ L +G VL
Sbjct 240 DPEAFTLWRWWNDPPLWL----GDAYQPQLHPEDRPVLLSLLAGLRGRADPGSGRNRAVL 295
Query 293 RLPGHDVDWVPVHVTVN 309
RL G +W+ V +
Sbjct 296 RLMGAGGEWLEAEVEAD 312
>gi|3818510|gb|AAC73057.1| unknown [Rhodococcus sp. X309]
Length=329
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/329 (28%), Positives = 139/329 (43%), Gaps = 56/329 (17%)
Query 3 HDWLLVETLGDEPAVVARGRELK-----KLVPITTFLRRSPYLAAVRTAIAETLQTGQSL 57
++W L+ETLG P VV+ G +K K + + +R P + VR++ + + +L
Sbjct 2 NEWHLIETLGKSPTVVSVGGNVKNWATTKRLSPSADVRIDPIIEQVRSSGTKIVLP--AL 59
Query 58 TSITPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEP-PDRPIPGPLKWDLTRGVATDTP 116
S K I PV+ G++H VQ+W G +A P P R + G W L R V T
Sbjct 60 DSARDKRSYRIECLPVVGPTGQVHAVQLWIGDPEAPPTPPRIVSG-FSWLLDRFVIAQTL 118
Query 117 ESLTNSGKNPEVEI-------TYGRAF----AEDLPARELNPNETQVL--AMAVKAKPGK 163
E+ SG PE + Y +A +E + A LNP + Q M+V G+
Sbjct 119 EAALMSGVKPEDHVPERTPAEYYAKAIKFDDSEAMLAAGLNPVDDQTFDADMSVLHADGR 178
Query 164 TLCSIWDLTDWQGTPIRIGFVARSALEPGPNGRDHLVARAMNWR--AETKAPAVPVDDLA 221
+ R AR +E G G L W +T P P LA
Sbjct 179 VM--------------RWHMWARGCVEEGERGLRLL------WHDVTDTTPPRRPT--LA 216
Query 222 QRILIGLAQ----AGVHRALVDLKTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVID 277
+ +GL + +G++ A+ +T L WL +P + WR +H DD+H++
Sbjct 217 E---LGLQESVKDSGIYTAVFCTQTAVLALWLPEPAPWVKWRDIPGANQVIHADDRHLLS 273
Query 278 AMTRDLANGSAS--HVL-RLPGHDVDWVP 303
+ GS HV+ RL + DW P
Sbjct 274 SAQDKFNLGSTDPVHVVARLRTENDDWRP 302
>gi|229489859|ref|ZP_04383715.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229323209|gb|EEN88974.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=329
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 90/329 (28%), Positives = 138/329 (42%), Gaps = 56/329 (17%)
Query 3 HDWLLVETLGDEPAVVARGRELK-----KLVPITTFLRRSPYLAAVRTAIAETLQTGQSL 57
++W L+ETLG P VV+ G +K K + + +R P + VR++ + + +L
Sbjct 2 NEWHLIETLGKSPTVVSVGGNVKNWATTKRLSPSADVRIDPIIEQVRSSGTKIVLP--AL 59
Query 58 TSITPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEP-PDRPIPGPLKWDLTRGVATDTP 116
S + I PV+ G++H VQ+W G D P P R + G W L R V T
Sbjct 60 DSARDQRSYRIECLPVVGPTGKVHAVQLWIGDPDVSPAPPRIVSG-FSWLLDRFVIAQTL 118
Query 117 ESLTNSGKNPEVEI-------TYGRAF----AEDLPARELNPNETQVL--AMAVKAKPGK 163
E+ SG PE + Y +A +E + A LNP + Q M+V G+
Sbjct 119 EAALMSGVKPEDHVPERTPAEYYAKAIKFDDSEAMLAAGLNPVDDQTFDADMSVLHADGR 178
Query 164 TLCSIWDLTDWQGTPIRIGFVARSALEPGPNGRDHLVARAMNWR--AETKAPAVPVDDLA 221
+ R AR +E G G L W +T P P LA
Sbjct 179 VM--------------RWHMWARGCVEEGERGLRLL------WHDVTDTTPPRRPT--LA 216
Query 222 QRILIGLAQ----AGVHRALVDLKTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVID 277
+ +GL + +G++ A+ +T L WL +P + WR +H DD+H++
Sbjct 217 E---LGLQESVKDSGIYTAVFCTQTAVLALWLPEPAPWVKWRDIPGANQVIHADDRHLLS 273
Query 278 AMTRDLANGSAS--HVL-RLPGHDVDWVP 303
+ GS HV+ RL + DW P
Sbjct 274 SAQDKFNLGSTDPVHVVARLRTENDDWRP 302
>gi|197658944|emb|CAR47817.1| hypothetical protein [Rhodococcus sp. PY11]
Length=331
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/325 (26%), Positives = 144/325 (45%), Gaps = 31/325 (9%)
Query 5 WLLVETLGDEPA-VVARGRELKKLVPITTFLRRSPYLAA---VRTAIAETLQTGQSLTSI 60
W L+ETL + A +VA G E K ++ RRS AA V I +T + +
Sbjct 4 WHLIETLTEGVATLVASGDETKNMIST----RRSISPAADILVEPIIEHVRKTREPFERV 59
Query 61 --TPKHDRVIRTE--PVIMTDGRMHGVQVWSG-PTDAEPPDRPIPGPLKWDLTRGVATDT 115
+ + +R R P+I G +HG+ +W G P + P R G W T + T
Sbjct 60 LHSKRLNRAWRFYAWPIIGPFGDVHGIHMWVGDPKEKMTPRRLTSGVF-WSTTDWLIYQT 118
Query 116 PESLTNSGKNPEVEITYGRAFAEDLPARELN-PNETQVLAMAVKAKPGKTLCSIWDLTDW 174
ES SG E + A + D R ++ E + L + + KPG L + + +
Sbjct 119 WESAAMSGTLLEDWVP--TALSSDYINRAIHMEKEQEFLEITLAPKPGMVLSTWFSVRHD 176
Query 175 QGTPIRIGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILI-GLAQAGV 233
G ++ + R P +G+ V + ++ P++P LA+ L GL + V
Sbjct 177 HGHAMQWQVILR----PTADGKG--VRVLYHDFSDAYPPSMPT--LAELGLTEGLDGSKV 228
Query 234 HRALVDLKTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANGSASHVLR 293
H AL + + +++ W+ + + +W+ + GP +HP D + A + ++ G A + +
Sbjct 229 HVALFEARRGSIVLWIGRAPEWLEWQYAHLTGPVVHPADLPTLQASAKRISLGEAPYTVD 288
Query 294 LP----GHDVDWVPVHVTVNRIELE 314
L G D +WV VT+ +L+
Sbjct 289 LVQLHRGQD-EWVKSSVTMRPFQLK 312
>gi|190015952|ref|YP_001965160.1| hypothetical protein PNSL1.057 [Rhodococcus sp. NS1]
gi|114796792|gb|ABI79385.1| hypothetical protein PNSL1.057 [Rhodococcus sp. NS1]
Length=332
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/327 (24%), Positives = 135/327 (42%), Gaps = 35/327 (10%)
Query 5 WLLVETLGDEPA-VVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQSLTSITPK 63
W ++ETL + A +VA G E K + I+T SP + I E ++ +
Sbjct 4 WHVIETLTEGVATLVASGNEAKGM--ISTRRSISPTADILVEPIIEHVRRTRE------P 55
Query 64 HDRVIRTE-----------PVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLTRGVA 112
DRV+ ++ P+I G +HG+Q+W G +R + W T +
Sbjct 56 FDRVLHSKRANRAWRFYAWPIIGPFGDVHGIQMWVGDPKEPIAERRLTSGTVWSTTEWLI 115
Query 113 TDTPESLTNSGKNPEVEITYGRAFAEDLPARELN-PNETQVLAMAVKAKPGKTLCSIWDL 171
T ES SG + + A + D R ++ E + L + + KP L + + +
Sbjct 116 YQTWESGAMSGTRLDDWVP--TALSSDYINRAIHMEKEQEFLEVVLTPKPDMALSTWFSV 173
Query 172 TDWQGTPIRIGFVARSALEPGPNGRDHLVARAMNWRAETKAPAVPVDDLAQRILI-GLAQ 230
G ++ V R P V + ++ P+ P LA+ L GL
Sbjct 174 RHDDGHAMQWQVVLR------PTADGTAVRVLYHDFSDAYPPSTPT--LAELGLTEGLDG 225
Query 231 AGVHRALVDLKTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRDLANG---S 287
+ VH AL + + + W+ + + +W+ + GP +HPDD + + + G S
Sbjct 226 SRVHVALFEARRGAIALWIGRAPKWVEWQYAHLTGPVVHPDDLPALQDSAKRINAGEVPS 285
Query 288 ASHVLRLPGHDVDWVPVHVTVNRIELE 314
+++L + +WV VT+ +LE
Sbjct 286 TVDLVQLHRGNTEWVKCSVTMRPFQLE 312
>gi|262118117|ref|YP_003275887.1| hypothetical protein Gbro_4881 [Gordonia bronchialis DSM 43247]
gi|262088027|gb|ACY23994.1| hypothetical protein Gbro_4881 [Gordonia bronchialis DSM 43247]
Length=334
Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 96/260 (37%), Gaps = 41/260 (15%)
Query 31 TTFLRRSPYLAAVRTAIAETLQTGQSLT-SITPKHDRVIRTEPVIMTDGR--MHGVQVWS 87
T+ RR+P + + + + + G ++ + P R +R V +T R ++GVQ W
Sbjct 31 TSLKRRAPAIVPIEDLVRDVVTHGSTIERTYRPASGRPVRVIVVPITSPRESVYGVQFWC 90
Query 88 GPTDAEPPDRPIPGPLKWDLTRGVATDTPESLTNSGKNPEV--EITYGRA---------F 136
G D PP R + WDL R ES SG+ + E+ R F
Sbjct 91 GSEDDIPPPRRRITGVFWDLQRRTVVQPWESTWMSGREDDYHEEVPLARVLQLGTRYDQF 150
Query 137 AEDLPARELNP---NETQVLAMAVKAKPGKTLCSIWDLTDWQGTPIRIGFVARSALEPGP 193
AE L +P + Q V K GK +C WQ + I P
Sbjct 151 AETLQLL-FDPKTGQKAQTHVTVVHHKSGKRMC-------WQVNIVAI----------PP 192
Query 194 NGRDHLVARAMNWRAETKAPAVPVDDLAQRILIGLAQAGVHRALVDLKTWTLLKWLDQPC 253
+G L W T A L Q + A GV+ A++ T+ +L P
Sbjct 193 HGTKVL------WEDVTDARPPETPTLHQLGMEEAAARGVNVAVIAPSVGTIAVFLTPPP 246
Query 254 SFYDWRRSAADGPRLHPDDQ 273
+ W +HPDDQ
Sbjct 247 KWMPWDYHRPGTRVIHPDDQ 266
>gi|111019417|ref|YP_702389.1| hypothetical protein RHA1_ro02426 [Rhodococcus jostii RHA1]
gi|110818947|gb|ABG94231.1| hypothetical protein RHA1_ro02426 [Rhodococcus jostii RHA1]
Length=311
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/108 (30%), Positives = 52/108 (49%), Gaps = 6/108 (5%)
Query 5 WLLVETLGDEPAVVARGRELKKLVPITTFLRRSPYLAAVRTAIAETLQTGQ----SLTSI 60
W+LVE LGD P V+A G + ++ P+ + R L V AI +GQ +L
Sbjct 10 WILVEILGDAPTVIAEGIKQRQCRPLGN-VYRGRMLTLVAGAIDTVKSSGQPVQVTLGET 68
Query 61 TPKHDRVIRTEPVIMTDGRMHGVQVWSGPTDAEPPDRPIPGPLKWDLT 108
D V+ +PV+ G + VQ+++G D+ P +W+L+
Sbjct 69 VGDIDLVV-GKPVLGPGGDVLAVQIFTGRADSPVPQPHRAAGWEWNLS 115
>gi|111027103|ref|YP_709081.1| hypothetical protein RHA1_ro11276 [Rhodococcus jostii RHA1]
gi|110825642|gb|ABH00923.1| hypothetical protein RHA1_ro11276 [Rhodococcus jostii RHA1]
Length=361
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/107 (33%), Positives = 51/107 (48%), Gaps = 15/107 (14%)
Query 12 GDEPAVVARG---RELKKLVPITTFLRRSPYLAAVRTAIA------ETLQTGQSLTSITP 62
GDE VVA G R+ +K+ + R+ L +RT IA ET + G+ ++ P
Sbjct 28 GDEHLVVAEGPKHRDWRKIGNVFREPARTAVLGLIRTCIADRELKIETFE-GKVADALGP 86
Query 63 KHDRVIRTEPVIMTDGRMH-GVQVWSGPTDAEPPDRPIPGPLKWDLT 108
V P++ D + VQ+WSG PPDRP G +W L+
Sbjct 87 ----VAAAHPILTPDKSVVVAVQIWSGDPKKNPPDRPNVGAWEWVLS 129
>gi|226349877|ref|YP_002776990.1| hypothetical protein ROP_pROB02-00460 [Rhodococcus opacus B4]
gi|226245792|dbj|BAH47059.1| hypothetical protein [Rhodococcus opacus B4]
Length=361
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/102 (31%), Positives = 47/102 (47%), Gaps = 5/102 (4%)
Query 12 GDEPAVVARGRELKKLVPITTFLR---RSPYLAAVRTAIAET-LQTGQSLTSITPKHDRV 67
GDE VVA G ++++ I +R R+ L +R IA+ L+ + V
Sbjct 28 GDEHHVVAEGAKIREWRNINNVVRGPARTAVLGLIRQCIADRDLRIEPFDGKVADALGPV 87
Query 68 IRTEPVIMTDGRMH-GVQVWSGPTDAEPPDRPIPGPLKWDLT 108
P++ D + VQVW+G PPDRP G +W L+
Sbjct 88 GAAHPILTPDKSVVVAVQVWTGDPKKNPPDRPNVGAWEWVLS 129
>gi|186474026|ref|YP_001861368.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
STM815]
gi|184196358|gb|ACC74322.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
STM815]
Length=869
Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/65 (33%), Positives = 31/65 (48%), Gaps = 0/65 (0%)
Query 223 RILIGLAQAGVHRALVDLKTWTLLKWLDQPCSFYDWRRSAADGPRLHPDDQHVIDAMTRD 282
R+ + + A +H VDL +WTL + + A R+HPDD+ V+D R
Sbjct 380 RLTVAMQAAEIHIVAVDLTSWTLSFEMGGEPRVGETLTYEAALSRIHPDDRPVLDGYVRQ 439
Query 283 LANGS 287
LA G
Sbjct 440 LATGG 444
Lambda K H
0.318 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 632983597940
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40