BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3653

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|339296463|gb|AEJ48574.1|  PE-PGRS family protein [Mycobacteriu...   307    7e-82
gi|148663516|ref|YP_001285039.1|  PE-PGRS family protein [Mycobac...   303    6e-81
gi|7476156|pir||F70787  hypothetical glycine-rich protein Rv3653 ...   303    7e-81
gi|57117140|ref|YP_178002.1|  PE-PGRS family-related protein [Myc...   301    3e-80
gi|297733322|ref|ZP_06962440.1|  hypothetical protein MtubKR_1962...   299    1e-79
gi|297636329|ref|ZP_06954109.1|  hypothetical protein MtubK4_1948...   283    1e-74
gi|340628625|ref|YP_004747077.1|  PE-PGRS family protein [Mycobac...  68.9    4e-10
gi|183982971|ref|YP_001851262.1|  PE-PGRS family protein [Mycobac...  56.6    2e-06
gi|289747488|ref|ZP_06506866.1|  PE-PGRS family protein [Mycobact...  55.1    5e-06
gi|254233148|ref|ZP_04926474.1|  PE-PGRS family protein [Mycobact...  55.1    5e-06
gi|294995436|ref|ZP_06801127.1|  PE-PGRS family protein [Mycobact...  55.1    6e-06
gi|15843266|ref|NP_338303.1|  PE_PGRS family protein [Mycobacteri...  53.9    1e-05
gi|313660654|ref|ZP_07817534.1|  hypothetical protein MtubKV_1962...  51.6    6e-05
gi|121639566|ref|YP_979790.1|  PE-PGRS family protein [Mycobacter...  51.2    7e-05
gi|31794823|ref|NP_857316.1|  PE-PGRS family-related protein [Myc...  51.2    8e-05
gi|339633645|ref|YP_004725287.1|  PE-PGRS family-related protein ...  50.8    9e-05
gi|183985012|ref|YP_001853303.1|  PE-PGRS family protein [Mycobac...  50.8    1e-04
gi|289554468|ref|ZP_06443678.1|  predicted protein [Mycobacterium...  50.1    2e-04
gi|253799200|ref|YP_003032201.1|  PE-PGRS family protein [Mycobac...  50.1    2e-04
gi|183980507|ref|YP_001848798.1|  PE-PGRS family protein [Mycobac...  49.7    2e-04
gi|57116905|ref|YP_177831.1|  PE-PGRS family protein [Mycobacteri...  49.7    2e-04
gi|344219580|gb|AEN00211.1|  PE-PGRS family protein [Mycobacteriu...  49.7    2e-04
gi|148822970|ref|YP_001287724.1|  PE-PGRS family protein [Mycobac...  49.7    2e-04
gi|240173448|ref|ZP_04752106.1|  PE-PGRS family protein [Mycobact...  49.7    2e-04
gi|31792948|ref|NP_855441.1|  hypothetical protein Mb1789c [Mycob...  49.3    3e-04
gi|224990143|ref|YP_002644830.1|  PE-PGRS family protein [Mycobac...  48.9    4e-04
gi|121637668|ref|YP_977891.1|  PE-PGRS family protein wag22b [Myc...  48.5    4e-04
gi|340626769|ref|YP_004745221.1|  PE-PGRS family protein [Mycobac...  48.1    7e-04
gi|31791287|ref|NP_853780.1|  PE-PGRS family protein [Mycobacteri...  47.8    8e-04
gi|57116691|ref|YP_177692.1|  PE-PGRS family protein [Mycobacteri...  47.8    8e-04
gi|254233503|ref|ZP_04926829.1|  PE-PGRS family protein [Mycobact...  47.8    8e-04
gi|289756171|ref|ZP_06515549.1|  predicted protein [Mycobacterium...  47.8    0.001
gi|254366564|ref|ZP_04982608.1|  PE-PGRS family protein [Mycobact...  47.0    0.001
gi|15839490|ref|NP_334527.1|  PE_PGRS family protein [Mycobacteri...  47.0    0.001
gi|289760209|ref|ZP_06519587.1|  predicted protein [Mycobacterium...  47.0    0.001
gi|298527500|ref|ZP_07014909.1|  predicted protein [Mycobacterium...  46.6    0.002
gi|183984370|ref|YP_001852661.1|  PE-PGRS family protein [Mycobac...  46.6    0.002
gi|308379697|ref|ZP_07487188.2|  putative PE family protein [Myco...  46.6    0.002
gi|183984333|ref|YP_001852624.1|  PE-PGRS family protein [Mycobac...  45.1    0.005
gi|183983738|ref|YP_001852029.1|  PE-PGRS family protein [Mycobac...  44.7    0.008
gi|183982047|ref|YP_001850338.1|  PE-PGRS family protein [Mycobac...  43.9    0.013
gi|240170237|ref|ZP_04748896.1|  PE-PGRS family protein [Mycobact...  42.4    0.032
gi|289446307|ref|ZP_06436051.1|  predicted protein [Mycobacterium...  42.0    0.041
gi|183981864|ref|YP_001850155.1|  PE-PGRS family protein, PE_PGRS...  42.0    0.044
gi|339630814|ref|YP_004722456.1|  PE-PGRS family protein [Mycobac...  42.0    0.052
gi|297634379|ref|ZP_06952159.1|  PE-PGRS family protein [Mycobact...  42.0    0.052
gi|57116773|ref|YP_177750.1|  PE-PGRS family protein [Mycobacteri...  42.0    0.052
gi|294996232|ref|ZP_06801923.1|  PE-PGRS family protein [Mycobact...  42.0    0.053
gi|121636668|ref|YP_976891.1|  PE-PGRS family protein [Mycobacter...  42.0    0.053
gi|31791932|ref|NP_854425.1|  PE-PGRS family protein [Mycobacteri...  42.0    0.053


>gi|339296463|gb|AEJ48574.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5079]
Length=300

 Score =  307 bits (786),  Expect = 7e-82, Method: Compositional matrix adjust.
 Identities = 195/195 (100%), Positives = 195/195 (100%), Gaps = 0/195 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF  60
            LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF
Sbjct  106  LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF  165

Query  61   GNGGAGGAGGSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS  120
            GNGGAGGAGGSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS
Sbjct  166  GNGGAGGAGGSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS  225

Query  121  DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG  180
            DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG
Sbjct  226  DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG  285

Query  181  TGGLLLGQDGMTGLT  195
            TGGLLLGQDGMTGLT
Sbjct  286  TGGLLLGQDGMTGLT  300


>gi|148663516|ref|YP_001285039.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|148507668|gb|ABQ75477.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
Length=242

 Score =  303 bits (777),  Expect = 6e-81, Method: Compositional matrix adjust.
 Identities = 195/195 (100%), Positives = 195/195 (100%), Gaps = 0/195 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF  60
            LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF
Sbjct  48   LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF  107

Query  61   GNGGAGGAGGSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS  120
            GNGGAGGAGGSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS
Sbjct  108  GNGGAGGAGGSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS  167

Query  121  DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG  180
            DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG
Sbjct  168  DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG  227

Query  181  TGGLLLGQDGMTGLT  195
            TGGLLLGQDGMTGLT
Sbjct  228  TGGLLLGQDGMTGLT  242


>gi|7476156|pir||F70787 hypothetical glycine-rich protein Rv3653 - Mycobacterium tuberculosis 
(strain H37RV)
Length=245

 Score =  303 bits (777),  Expect = 7e-81, Method: Compositional matrix adjust.
 Identities = 195/195 (100%), Positives = 195/195 (100%), Gaps = 0/195 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF  60
            LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF
Sbjct  51   LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF  110

Query  61   GNGGAGGAGGSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS  120
            GNGGAGGAGGSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS
Sbjct  111  GNGGAGGAGGSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS  170

Query  121  DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG  180
            DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG
Sbjct  171  DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG  230

Query  181  TGGLLLGQDGMTGLT  195
            TGGLLLGQDGMTGLT
Sbjct  231  TGGLLLGQDGMTGLT  245


>gi|57117140|ref|YP_178002.1| PE-PGRS family-related protein [Mycobacterium tuberculosis H37Rv]
 gi|148824856|ref|YP_001289610.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|253800694|ref|YP_003033695.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 6 more sequence titles
 
gi|289763830|ref|ZP_06523208.1| PE-PGRS family protein [Mycobacterium tuberculosis GM 1503]
 gi|41352820|emb|CAE55627.1| PE-PGRS FAMILY-RELATED PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148723383|gb|ABR08008.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|253322197|gb|ACT26800.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289711336|gb|EFD75352.1| PE-PGRS family protein [Mycobacterium tuberculosis GM 1503]
 gi|344221488|gb|AEN02119.1| PE-PGRS family-related protein [Mycobacterium tuberculosis CTRI-2]
Length=195

 Score =  301 bits (771),  Expect = 3e-80, Method: Compositional matrix adjust.
 Identities = 194/195 (99%), Positives = 195/195 (100%), Gaps = 0/195 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF  60
            +LNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF
Sbjct  1    MLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF  60

Query  61   GNGGAGGAGGSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS  120
            GNGGAGGAGGSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS
Sbjct  61   GNGGAGGAGGSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS  120

Query  121  DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG  180
            DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG
Sbjct  121  DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG  180

Query  181  TGGLLLGQDGMTGLT  195
            TGGLLLGQDGMTGLT
Sbjct  181  TGGLLLGQDGMTGLT  195


>gi|297733322|ref|ZP_06962440.1| hypothetical protein MtubKR_19620 [Mycobacterium tuberculosis 
KZN R506]
Length=195

 Score =  299 bits (766),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 193/195 (99%), Positives = 194/195 (99%), Gaps = 0/195 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF  60
            +LNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF
Sbjct  1    MLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLF  60

Query  61   GNGGAGGAGGSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS  120
            GNGGAGGAGGSATAG AGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS
Sbjct  61   GNGGAGGAGGSATAGXAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGS  120

Query  121  DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG  180
            DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG
Sbjct  121  DTAGHGGTGGAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGG  180

Query  181  TGGLLLGQDGMTGLT  195
            TGGLLLGQDGMTGLT
Sbjct  181  TGGLLLGQDGMTGLT  195


>gi|297636329|ref|ZP_06954109.1| hypothetical protein MtubK4_19485 [Mycobacterium tuberculosis 
KZN 4207]
Length=186

 Score =  283 bits (723),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 185/186 (99%), Positives = 186/186 (100%), Gaps = 0/186 (0%)

Query  10   LGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLFGNGGAGGAG  69
            +GRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLFGNGGAGGAG
Sbjct  1    MGRPLVGNGANGAPGTGANGGDGGILFGSGGAGGSGAAGMAGGNGGAAGLFGNGGAGGAG  60

Query  70   GSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGSDTAGHGGTG  129
            GSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGSDTAGHGGTG
Sbjct  61   GSATAGAAGAGGNGGAGGLLFGTAGAGGNGGLSLGLGVAGGAGGAGGSGGSDTAGHGGTG  120

Query  130  GAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGGTGGLLLGQD  189
            GAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGGTGGLLLGQD
Sbjct  121  GAGGLLFGAGEDGTTPGGNGGAGGVAGLFGDGGNGGNAGVGTPAGNVGAGGTGGLLLGQD  180

Query  190  GMTGLT  195
            GMTGLT
Sbjct  181  GMTGLT  186


>gi|340628625|ref|YP_004747077.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|340006815|emb|CCC46004.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=901

 Score = 68.9 bits (167),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 33/36 (92%), Positives = 35/36 (98%), Gaps = 0/36 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36
            LLNAPTQALLGRPL+GNGANGAPG+GANGGDG ILF
Sbjct  204  LLNAPTQALLGRPLIGNGANGAPGSGANGGDGWILF  239


 Score = 50.8 bits (120),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 23/28 (83%), Positives = 27/28 (97%), Gaps = 0/28 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANG  29
            +NAPTQAL+GRPL+GNG NGAPGTGA+G
Sbjct  578  INAPTQALVGRPLIGNGVNGAPGTGADG  605


>gi|183982971|ref|YP_001851262.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183176297|gb|ACC41407.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=675

 Score = 56.6 bits (135),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 27/29 (94%), Positives = 29/29 (100%), Gaps = 0/29 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGANG  29
            L+NAPTQALLGRPL+GNGANGAPGTGANG
Sbjct  108  LVNAPTQALLGRPLIGNGANGAPGTGANG  136


>gi|289747488|ref|ZP_06506866.1| PE-PGRS family protein [Mycobacterium tuberculosis 02_1987]
 gi|289688016|gb|EFD55504.1| PE-PGRS family protein [Mycobacterium tuberculosis 02_1987]
Length=209

 Score = 55.1 bits (131),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 36/36 (100%), Positives = 36/36 (100%), Gaps = 0/36 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36
            LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF
Sbjct  106  LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  141


>gi|254233148|ref|ZP_04926474.1| PE-PGRS family protein [Mycobacterium tuberculosis C]
 gi|124602941|gb|EAY61216.1| PE-PGRS family protein [Mycobacterium tuberculosis C]
Length=221

 Score = 55.1 bits (131),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 36/36 (100%), Positives = 36/36 (100%), Gaps = 0/36 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36
            LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF
Sbjct  106  LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  141


>gi|294995436|ref|ZP_06801127.1| PE-PGRS family protein [Mycobacterium tuberculosis 210]
 gi|339300062|gb|AEJ52172.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5180]
Length=306

 Score = 55.1 bits (131),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 36/36 (100%), Positives = 36/36 (100%), Gaps = 0/36 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36
            LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF
Sbjct  106  LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  141


>gi|15843266|ref|NP_338303.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|13883624|gb|AAK48117.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
Length=248

 Score = 53.9 bits (128),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 36/36 (100%), Positives = 36/36 (100%), Gaps = 0/36 (0%)

Query  1   LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36
           LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF
Sbjct  48  LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  83


>gi|313660654|ref|ZP_07817534.1| hypothetical protein MtubKV_19620 [Mycobacterium tuberculosis 
KZN V2475]
Length=195

 Score = 51.6 bits (122),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 35/36 (98%), Positives = 36/36 (100%), Gaps = 0/36 (0%)

Query  1   LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36
           +LNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF
Sbjct  1   MLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36


>gi|121639566|ref|YP_979790.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224992063|ref|YP_002646752.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121495214|emb|CAL73700.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224775178|dbj|BAH27984.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341603587|emb|CCC66268.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=231

 Score = 51.2 bits (121),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 35/36 (98%), Positives = 36/36 (100%), Gaps = 0/36 (0%)

Query  1   LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36
           +LNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF
Sbjct  1   MLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36


>gi|31794823|ref|NP_857316.1| PE-PGRS family-related protein [Mycobacterium bovis AF2122/97]
 gi|31620420|emb|CAD95863.1| PE-PGRS FAMILY-RELATED PROTEIN [Mycobacterium bovis AF2122/97]
Length=237

 Score = 51.2 bits (121),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 35/36 (98%), Positives = 36/36 (100%), Gaps = 0/36 (0%)

Query  1   LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36
           +LNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF
Sbjct  1   MLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36


>gi|339633645|ref|YP_004725287.1| PE-PGRS family-related protein [Mycobacterium africanum GM041182]
 gi|339333001|emb|CCC28729.1| PE-PGRS family-related protein [Mycobacterium africanum GM041182]
Length=182

 Score = 50.8 bits (120),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 35/36 (98%), Positives = 36/36 (100%), Gaps = 0/36 (0%)

Query  1   LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36
           +LNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF
Sbjct  1   MLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36


>gi|183985012|ref|YP_001853303.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183178338|gb|ACC43448.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=1451

 Score = 50.8 bits (120),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 32/36 (89%), Positives = 35/36 (98%), Gaps = 0/36 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36
            L+NAPTQALLGRPL+GNGANGAPGTG NGGDGG+LF
Sbjct  104  LVNAPTQALLGRPLIGNGANGAPGTGQNGGDGGLLF  139


>gi|289554468|ref|ZP_06443678.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|289439100|gb|EFD21593.1| predicted protein [Mycobacterium tuberculosis KZN 605]
Length=954

 Score = 50.1 bits (118),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/34 (77%), Positives = 28/34 (83%), Gaps = 0/34 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGGDGGIL  35
            +NAP  A  GRPL+GNGANGAPGTGANGGD G L
Sbjct  142  INAPVLAATGRPLIGNGANGAPGTGANGGDAGWL  175


>gi|253799200|ref|YP_003032201.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|253320703|gb|ACT25306.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|328458955|gb|AEB04378.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207]
Length=950

 Score = 50.1 bits (118),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/34 (77%), Positives = 28/34 (83%), Gaps = 0/34 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGGDGGIL  35
            +NAP  A  GRPL+GNGANGAPGTGANGGD G L
Sbjct  138  INAPVLAATGRPLIGNGANGAPGTGANGGDAGWL  171


>gi|183980507|ref|YP_001848798.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183173833|gb|ACC38943.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=675

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 30/35 (86%), Positives = 34/35 (98%), Gaps = 0/35 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36
            +NAPTQALLGRPL+GNGAN APG+GANGGDGGIL+
Sbjct  103  INAPTQALLGRPLIGNGANAAPGSGANGGDGGILY  137


>gi|57116905|ref|YP_177831.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
 gi|61249984|sp|P0A686.1|WA22_MYCTU RecName: Full=WAG22 antigen; Flags: Precursor
 gi|61249985|sp|P0A687.1|WA22_MYCBO RecName: Full=WAG22 antigen; Flags: Precursor
 gi|38684054|emb|CAE55417.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
Length=914

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/34 (77%), Positives = 28/34 (83%), Gaps = 0/34 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGGDGGIL  35
            +NAP  A  GRPL+GNGANGAPGTGANGGD G L
Sbjct  102  INAPVLAATGRPLIGNGANGAPGTGANGGDAGWL  135


>gi|344219580|gb|AEN00211.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=914

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/34 (77%), Positives = 28/34 (83%), Gaps = 0/34 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGGDGGIL  35
            +NAP  A  GRPL+GNGANGAPGTGANGGD G L
Sbjct  102  INAPVLAATGRPLIGNGANGAPGTGANGGDAGWL  135


>gi|148822970|ref|YP_001287724.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|148721497|gb|ABR06122.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
Length=911

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/34 (77%), Positives = 28/34 (83%), Gaps = 0/34 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGGDGGIL  35
            +NAP  A  GRPL+GNGANGAPGTGANGGD G L
Sbjct  102  INAPVLAATGRPLIGNGANGAPGTGANGGDAGWL  135


>gi|240173448|ref|ZP_04752106.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=304

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 32/36 (89%), Positives = 35/36 (98%), Gaps = 0/36 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36
            L+NAPTQA+ GRPL+GNGANGAPGTGANGGDGGILF
Sbjct  104  LVNAPTQAVFGRPLIGNGANGAPGTGANGGDGGILF  139


>gi|31792948|ref|NP_855441.1| hypothetical protein Mb1789c [Mycobacterium bovis AF2122/97]
 gi|31618539|emb|CAD94491.1| PE-PGRS FAMILY PROTEIN WAG22B [SECOND PART] [Mycobacterium bovis 
AF2122/97]
Length=820

 Score = 49.3 bits (116),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 26/34 (77%), Positives = 28/34 (83%), Gaps = 0/34 (0%)

Query  2   LNAPTQALLGRPLVGNGANGAPGTGANGGDGGIL  35
           +NAP  A  GRPL+GNGANGAPGTGANGGD G L
Sbjct  8   INAPVLAATGRPLIGNGANGAPGTGANGGDAGWL  41


>gi|224990143|ref|YP_002644830.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|224773256|dbj|BAH26062.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341601686|emb|CCC64359.1| PE-PGRS family protein wag22b [second part] [Mycobacterium bovis 
BCG str. Moreau RDJ]
Length=803

 Score = 48.9 bits (115),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 26/34 (77%), Positives = 28/34 (83%), Gaps = 0/34 (0%)

Query  2   LNAPTQALLGRPLVGNGANGAPGTGANGGDGGIL  35
           +NAP  A  GRPL+GNGANGAPGTGANGGD G L
Sbjct  8   INAPVLAATGRPLIGNGANGAPGTGANGGDAGWL  41


>gi|121637668|ref|YP_977891.1| PE-PGRS family protein wag22b [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|121493315|emb|CAL71786.1| PE-PGRS family protein wag22b [second part] [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
Length=802

 Score = 48.5 bits (114),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 26/34 (77%), Positives = 28/34 (83%), Gaps = 0/34 (0%)

Query  2   LNAPTQALLGRPLVGNGANGAPGTGANGGDGGIL  35
           +NAP  A  GRPL+GNGANGAPGTGANGGD G L
Sbjct  8   INAPVLAATGRPLIGNGANGAPGTGANGGDAGWL  41


>gi|340626769|ref|YP_004745221.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|340004959|emb|CCC44107.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=914

 Score = 48.1 bits (113),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 25/34 (74%), Positives = 27/34 (80%), Gaps = 0/34 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGGDGGIL  35
            +NAP  A  GRPL+ NGANGAPGTGANGGD G L
Sbjct  102  INAPVLAATGRPLIANGANGAPGTGANGGDAGWL  135


>gi|31791287|ref|NP_853780.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97]
 gi|121636022|ref|YP_976245.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148659872|ref|YP_001281395.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 25 more sequence titles
 
gi|224988495|ref|YP_002643182.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254549043|ref|ZP_05139490.1| PE-PGRS family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289445639|ref|ZP_06435383.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289572689|ref|ZP_06452916.1| PE-PGRS family protein [Mycobacterium tuberculosis K85]
 gi|294992952|ref|ZP_06798643.1| PE-PGRS family protein [Mycobacterium tuberculosis 210]
 gi|297632582|ref|ZP_06950362.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297729556|ref|ZP_06958674.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN R506]
 gi|306782725|ref|ZP_07421047.1| hypothetical protein TMCG_02317 [Mycobacterium tuberculosis SUMu003]
 gi|313656883|ref|ZP_07813763.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN V2475]
 gi|339630193|ref|YP_004721835.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|340625144|ref|YP_004743596.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|31616872|emb|CAD92974.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121491669|emb|CAL70127.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148504024|gb|ABQ71833.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|224771608|dbj|BAH24414.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289418597|gb|EFD15798.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289537120|gb|EFD41698.1| PE-PGRS family protein [Mycobacterium tuberculosis K85]
 gi|308332432|gb|EFP21283.1| hypothetical protein TMCG_02317 [Mycobacterium tuberculosis SUMu003]
 gi|326905868|gb|EGE52801.1| PE-PGRS family protein [Mycobacterium tuberculosis W-148]
 gi|339293174|gb|AEJ45285.1| putative PE family protein [Mycobacterium tuberculosis CCDC5079]
 gi|339296822|gb|AEJ48932.1| putative PE family protein [Mycobacterium tuberculosis CCDC5180]
 gi|339329549|emb|CCC25184.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|340003334|emb|CCC42453.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|341600038|emb|CCC62706.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
 gi|344217927|gb|AEM98557.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=496

 Score = 47.8 bits (112),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 20/28 (72%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGAN  28
            ++NAPTQALLGRP++GNGANG P TG +
Sbjct  111  VVNAPTQALLGRPIIGNGANGLPNTGQD  138


>gi|57116691|ref|YP_177692.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
 gi|7476118|pir||H70839 hypothetical glycine-rich protein Rv0109 - Mycobacterium tuberculosis 
(strain H37RV)
 gi|41352732|emb|CAE55242.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
Length=496

 Score = 47.8 bits (112),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 20/28 (72%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGAN  28
            ++NAPTQALLGRP++GNGANG P TG +
Sbjct  111  VVNAPTQALLGRPIIGNGANGLPNTGQD  138


>gi|254233503|ref|ZP_04926829.1| PE-PGRS family protein [Mycobacterium tuberculosis C]
 gi|124603296|gb|EAY61571.1| PE-PGRS family protein [Mycobacterium tuberculosis C]
Length=433

 Score = 47.8 bits (112),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 20/28 (72%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGAN  28
            ++NAPTQALLGRP++GNGANG P TG +
Sbjct  111  VVNAPTQALLGRPIIGNGANGLPNTGQD  138


>gi|289756171|ref|ZP_06515549.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289696758|gb|EFD64187.1| predicted protein [Mycobacterium tuberculosis EAS054]
Length=496

 Score = 47.8 bits (112),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 20/28 (72%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGAN  28
            ++NAPTQALLGRP++GNGANG P TG +
Sbjct  111  VVNAPTQALLGRPIIGNGANGLPNTGQD  138


>gi|254366564|ref|ZP_04982608.1| PE-PGRS family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134152076|gb|EBA44121.1| PE-PGRS family protein [Mycobacterium tuberculosis str. Haarlem]
Length=533

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 20/28 (72%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGAN  28
            ++NAPTQALLGRP++GNGANG P TG +
Sbjct  148  VVNAPTQALLGRPIIGNGANGLPNTGQD  175


>gi|15839490|ref|NP_334527.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|148821301|ref|YP_001286055.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|253797027|ref|YP_003030028.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 8 more sequence titles
 
gi|289552360|ref|ZP_06441570.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|289747876|ref|ZP_06507254.1| predicted protein [Mycobacterium tuberculosis 02_1987]
 gi|13879597|gb|AAK44341.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|148719828|gb|ABR04453.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|253318530|gb|ACT23133.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289436992|gb|EFD19485.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|289688404|gb|EFD55892.1| predicted protein [Mycobacterium tuberculosis 02_1987]
 gi|328456816|gb|AEB02239.1| hypothetical protein TBSG_00110 [Mycobacterium tuberculosis KZN 
4207]
Length=533

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 20/28 (72%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGAN  28
            ++NAPTQALLGRP++GNGANG P TG +
Sbjct  148  VVNAPTQALLGRPIIGNGANGLPNTGQD  175


>gi|289760209|ref|ZP_06519587.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289715773|gb|EFD79785.1| predicted protein [Mycobacterium tuberculosis T85]
Length=420

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 20/28 (72%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  1   LLNAPTQALLGRPLVGNGANGAPGTGAN  28
           ++NAPTQALLGRP++GNGANG P TG +
Sbjct  35  VVNAPTQALLGRPIIGNGANGLPNTGQD  62


>gi|298527500|ref|ZP_07014909.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298497294|gb|EFI32588.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
Length=337

 Score = 46.6 bits (109),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 20/28 (72%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGAN  28
            ++NAPTQALLGRP++GNGANG P TG +
Sbjct  148  VVNAPTQALLGRPIIGNGANGLPNTGQD  175


>gi|183984370|ref|YP_001852661.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183177696|gb|ACC42806.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=910

 Score = 46.6 bits (109),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/29 (73%), Positives = 25/29 (87%), Gaps = 0/29 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGG  30
            +NAP Q+L GRPL+GNGANG PGTGA+G 
Sbjct  105  INAPVQSLTGRPLIGNGANGTPGTGADGA  133


>gi|308379697|ref|ZP_07487188.2| putative PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308356165|gb|EFP45016.1| putative PE family protein [Mycobacterium tuberculosis SUMu010]
Length=419

 Score = 46.6 bits (109),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 20/28 (72%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGAN  28
            ++NAPTQALLGRP++GNGANG P TG +
Sbjct  148  VVNAPTQALLGRPIIGNGANGLPNTGQD  175


>gi|183984333|ref|YP_001852624.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183177659|gb|ACC42769.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=521

 Score = 45.1 bits (105),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 18/23 (79%), Positives = 22/23 (96%), Gaps = 0/23 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAP  23
            ++NAPTQAL+GRPL+GNG NGAP
Sbjct  102  IVNAPTQALIGRPLIGNGTNGAP  124


>gi|183983738|ref|YP_001852029.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183177064|gb|ACC42174.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=860

 Score = 44.7 bits (104),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 18/23 (79%), Positives = 22/23 (96%), Gaps = 0/23 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAP  23
            L+NAPTQALL RPL+G+G+NGAP
Sbjct  104  LINAPTQALLARPLIGDGSNGAP  126


>gi|183982047|ref|YP_001850338.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183175373|gb|ACC40483.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=1289

 Score = 43.9 bits (102),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 19/23 (83%), Positives = 22/23 (96%), Gaps = 0/23 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAP  23
            L+N PTQALLGRPL+GNGA+GAP
Sbjct  104  LINGPTQALLGRPLIGNGASGAP  126


>gi|240170237|ref|ZP_04748896.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=500

 Score = 42.4 bits (98),  Expect = 0.032, Method: Compositional matrix adjust.
 Identities = 16/23 (70%), Positives = 20/23 (87%), Gaps = 0/23 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAP  23
            ++N PT+ L GRPL+GNGANGAP
Sbjct  102  VINEPTEYLFGRPLIGNGANGAP  124


>gi|289446307|ref|ZP_06436051.1| predicted protein [Mycobacterium tuberculosis CPHL_A]
 gi|289419265|gb|EFD16466.1| predicted protein [Mycobacterium tuberculosis CPHL_A]
Length=563

 Score = 42.0 bits (97),  Expect = 0.041, Method: Compositional matrix adjust.
 Identities = 22/28 (79%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANG  29
            +NA + AL GRPL+GNGANGAPGTGANG
Sbjct  185  VNAQSVALTGRPLIGNGANGAPGTGANG  212


>gi|183981864|ref|YP_001850155.1| PE-PGRS family protein, PE_PGRS [Mycobacterium marinum M]
 gi|183175190|gb|ACC40300.1| PE-PGRS family protein, PE_PGRS [Mycobacterium marinum M]
Length=861

 Score = 42.0 bits (97),  Expect = 0.044, Method: Compositional matrix adjust.
 Identities = 21/29 (73%), Positives = 24/29 (83%), Gaps = 0/29 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGG  30
            +N P  AL GRPL+GNGANGAPGTGA+G 
Sbjct  106  INEPALALTGRPLIGNGANGAPGTGADGA  134


 Score = 38.9 bits (89),  Expect = 0.45, Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 23/28 (83%), Gaps = 0/28 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANG  29
            +NAPTQAL GRPL+GNG  GA GTGA G
Sbjct  493  INAPTQALTGRPLIGNGTPGAAGTGAIG  520


>gi|339630814|ref|YP_004722456.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|339330170|emb|CCC25828.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=843

 Score = 42.0 bits (97),  Expect = 0.052, Method: Compositional matrix adjust.
 Identities = 22/29 (76%), Positives = 25/29 (87%), Gaps = 0/29 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGG  30
            +NA + AL GRPL+GNGANGAPGTGANG 
Sbjct  113  VNAQSVALTGRPLIGNGANGAPGTGANGA  141


 Score = 37.0 bits (84),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 19/29 (66%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGG  30
            +NAPTQ L GRPL+GNG  GA G+GA G 
Sbjct  477  INAPTQTLTGRPLIGNGTPGAVGSGATGA  505


>gi|297634379|ref|ZP_06952159.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207]
Length=354

 Score = 42.0 bits (97),  Expect = 0.052, Method: Compositional matrix adjust.
 Identities = 30/36 (84%), Positives = 33/36 (92%), Gaps = 0/36 (0%)

Query  1    LLNAPTQALLGRPLVGNGANGAPGTGANGGDGGILF  36
            ++NAP  ALLGRPL+GNGANGAPGTGANGGDGGIL 
Sbjct  104  VINAPALALLGRPLIGNGANGAPGTGANGGDGGILI  139


>gi|57116773|ref|YP_177750.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
 gi|7441228|pir||E70824 hypothetical glycine-rich protein Rv0746 - Mycobacterium tuberculosis 
(strain H37RV)
 gi|38490225|emb|CAE55316.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
Length=783

 Score = 42.0 bits (97),  Expect = 0.052, Method: Compositional matrix adjust.
 Identities = 22/29 (76%), Positives = 25/29 (87%), Gaps = 0/29 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGG  30
            +NA + AL GRPL+GNGANGAPGTGANG 
Sbjct  113  VNAQSVALTGRPLIGNGANGAPGTGANGA  141


 Score = 37.0 bits (84),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 19/29 (66%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGG  30
            +NAPTQ L GRPL+GNG  GA G+GA G 
Sbjct  463  INAPTQTLTGRPLIGNGTPGAVGSGATGA  491


>gi|294996232|ref|ZP_06801923.1| PE-PGRS family protein [Mycobacterium tuberculosis 210]
Length=784

 Score = 42.0 bits (97),  Expect = 0.053, Method: Compositional matrix adjust.
 Identities = 22/29 (76%), Positives = 25/29 (87%), Gaps = 0/29 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGG  30
            +NA + AL GRPL+GNGANGAPGTGANG 
Sbjct  113  VNAQSVALTGRPLIGNGANGAPGTGANGA  141


 Score = 37.0 bits (84),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 19/29 (66%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGG  30
            +NAPTQ L GRPL+GNG  GA G+GA G 
Sbjct  418  INAPTQTLTGRPLIGNGTPGAVGSGATGA  446


>gi|121636668|ref|YP_976891.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989140|ref|YP_002643827.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121492315|emb|CAL70782.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224772253|dbj|BAH25059.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341600684|emb|CCC63354.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=797

 Score = 42.0 bits (97),  Expect = 0.053, Method: Compositional matrix adjust.
 Identities = 22/29 (76%), Positives = 25/29 (87%), Gaps = 0/29 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGG  30
            +NA + AL GRPL+GNGANGAPGTGANG 
Sbjct  113  VNAQSVALTGRPLIGNGANGAPGTGANGA  141


 Score = 37.0 bits (84),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 19/29 (66%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGG  30
            +NAPTQ L GRPL+GNG  GA G+GA G 
Sbjct  447  INAPTQTLTGRPLIGNGTPGAVGSGATGA  475


>gi|31791932|ref|NP_854425.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97]
 gi|31617519|emb|CAD93629.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=797

 Score = 42.0 bits (97),  Expect = 0.053, Method: Compositional matrix adjust.
 Identities = 22/29 (76%), Positives = 25/29 (87%), Gaps = 0/29 (0%)

Query  2    LNAPTQALLGRPLVGNGANGAPGTGANGG  30
            +NA + AL GRPL+GNGANGAPGTGANG 
Sbjct  113  VNAQSVALTGRPLIGNGANGAPGTGANGA  141



Lambda     K      H
   0.308    0.143    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 202202242956


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40