BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3657c
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
gi|148663519|ref|YP_001285042.1| putative alanine rich membrane ... 353 7e-96
gi|167970802|ref|ZP_02553079.1| putative conserved alanine rich ... 353 8e-96
gi|308369181|ref|ZP_07666674.1| conserved alanine rich membrane ... 352 2e-95
gi|15610793|ref|NP_218174.1| hypothetical protein Rv3657c [Mycob... 352 2e-95
gi|339296465|gb|AEJ48576.1| conserved alanine rich membrane prot... 350 5e-95
gi|340628629|ref|YP_004747081.1| hypothetical protein MCAN_36771... 349 1e-94
gi|307081837|ref|ZP_07491007.1| putative bacterial type II secre... 314 4e-84
gi|254366205|ref|ZP_04982249.1| conserved alanine rich membrane ... 246 2e-63
gi|289759811|ref|ZP_06519189.1| alanine rich membrane protein [M... 243 1e-62
gi|289747492|ref|ZP_06506870.1| alanine rich membrane protein [M... 226 2e-57
gi|306801285|ref|ZP_07437953.1| hypothetical protein TMHG_02717 ... 202 1e-50
gi|333992579|ref|YP_004525193.1| hypothetical protein JDM601_393... 184 4e-45
gi|342862008|ref|ZP_08718652.1| type II secretion system protein... 169 1e-40
gi|308232521|ref|ZP_07416349.2| hypothetical protein TMAG_00146 ... 169 1e-40
gi|183985114|ref|YP_001853405.1| hypothetical protein MMAR_5145 ... 169 2e-40
gi|118619398|ref|YP_907730.1| hypothetical protein MUL_4230 [Myc... 166 2e-39
gi|289755782|ref|ZP_06515160.1| hypothetical protein TBGG_02864 ... 164 6e-39
gi|118471127|ref|YP_890387.1| type II secretion system protein F... 155 2e-36
gi|254552768|ref|ZP_05143215.1| hypothetical protein Mtube_20352... 155 3e-36
gi|118463862|ref|YP_879791.1| type II secretion system protein F... 152 3e-35
gi|41406516|ref|NP_959352.1| hypothetical protein MAP0418 [Mycob... 150 6e-35
gi|336460806|gb|EGO39691.1| Flp pilus assembly protein TadC [Myc... 149 1e-34
gi|120406353|ref|YP_956182.1| type II secretion system protein [... 148 3e-34
gi|306778011|ref|ZP_07416348.1| conserved alanine rich membrane ... 143 1e-32
gi|325675225|ref|ZP_08154910.1| bacterial type II secretion syst... 139 2e-31
gi|312138012|ref|YP_004005348.1| type ii secretion system integr... 139 2e-31
gi|315446283|ref|YP_004079162.1| Flp pilus assembly protein TadC... 139 2e-31
gi|226363662|ref|YP_002781444.1| hypothetical protein ROP_42520 ... 139 3e-31
gi|145221978|ref|YP_001132656.1| type II secretion system protei... 138 3e-31
gi|126437754|ref|YP_001073445.1| type II secretion system protei... 138 4e-31
gi|306786565|ref|ZP_07424887.1| conserved alanine rich membrane ... 137 8e-31
gi|169627576|ref|YP_001701225.1| hypothetical protein MAB_0472 [... 135 2e-30
gi|262200535|ref|YP_003271743.1| type II secretion system F doma... 135 4e-30
gi|111021318|ref|YP_704290.1| hypothetical protein RHA1_ro04342 ... 131 4e-29
gi|296141574|ref|YP_003648817.1| type II secretion system F doma... 128 5e-28
gi|108801766|ref|YP_641963.1| type II secretion system protein [... 127 9e-28
gi|343926486|ref|ZP_08765991.1| hypothetical protein GOALK_060_0... 121 4e-26
gi|229494799|ref|ZP_04388555.1| bacterial type II secretion syst... 119 3e-25
gi|326383472|ref|ZP_08205159.1| Type II secretion system F domai... 118 3e-25
gi|226303995|ref|YP_002763953.1| hypothetical protein RER_05060 ... 116 1e-24
gi|333917959|ref|YP_004491540.1| Type II secretion system F doma... 107 9e-22
gi|254773480|ref|ZP_05214996.1| type II secretion system protein... 107 9e-22
gi|317508888|ref|ZP_07966527.1| alanine rich membrane protein [S... 103 9e-21
gi|256374433|ref|YP_003098093.1| type II secretion system protei... 101 5e-20
gi|296118089|ref|ZP_06836671.1| membrane protein [Corynebacteriu... 101 5e-20
gi|302530824|ref|ZP_07283166.1| predicted protein [Streptomyces ... 101 5e-20
gi|257057540|ref|YP_003135372.1| Flp pilus assembly protein TadC... 94.4 7e-18
gi|227832053|ref|YP_002833760.1| hypothetical protein cauri_0223... 91.3 6e-17
gi|345000557|ref|YP_004803411.1| Type II secretion system F doma... 91.3 7e-17
gi|296394989|ref|YP_003659873.1| type II secretion system F doma... 89.0 3e-16
>gi|148663519|ref|YP_001285042.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
H37Ra]
gi|289555918|ref|ZP_06445128.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
KZN 605]
gi|308379570|ref|ZP_07486790.2| conserved alanine rich membrane protein [Mycobacterium tuberculosis
SUMu010]
gi|148507671|gb|ABQ75480.1| putative conserved alanine rich membrane protein [Mycobacterium
tuberculosis H37Ra]
gi|289440550|gb|EFD23043.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
KZN 605]
gi|308356401|gb|EFP45252.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
SUMu010]
gi|328460427|gb|AEB05850.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
KZN 4207]
Length=226
Score = 353 bits (906), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 191/191 (100%), Positives = 191/191 (100%), Gaps = 0/191 (0%)
Query 1 MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS 60
MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS
Sbjct 36 MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS 95
Query 61 TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS 120
TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS
Sbjct 96 TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS 155
Query 121 AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG 180
AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG
Sbjct 156 AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG 215
Query 181 LAGDVLQFGLV 191
LAGDVLQFGLV
Sbjct 216 LAGDVLQFGLV 226
>gi|167970802|ref|ZP_02553079.1| putative conserved alanine rich membrane protein [Mycobacterium
tuberculosis H37Ra]
gi|254233153|ref|ZP_04926479.1| hypothetical protein TBCG_03579 [Mycobacterium tuberculosis C]
gi|294992923|ref|ZP_06798614.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
210]
gi|297636333|ref|ZP_06954113.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
KZN 4207]
gi|297733326|ref|ZP_06962444.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
KZN R506]
gi|313660658|ref|ZP_07817538.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
KZN V2475]
gi|124602946|gb|EAY61221.1| hypothetical protein TBCG_03579 [Mycobacterium tuberculosis C]
gi|339300064|gb|AEJ52174.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
CCDC5180]
Length=200
Score = 353 bits (905), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 191/191 (100%), Positives = 191/191 (100%), Gaps = 0/191 (0%)
Query 1 MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS 60
MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS
Sbjct 10 MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS 69
Query 61 TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS 120
TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS
Sbjct 70 TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS 129
Query 121 AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG 180
AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG
Sbjct 130 AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG 189
Query 181 LAGDVLQFGLV 191
LAGDVLQFGLV
Sbjct 190 LAGDVLQFGLV 200
>gi|308369181|ref|ZP_07666674.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
SUMu002]
gi|308372607|ref|ZP_07429253.2| conserved alanine rich membrane protein [Mycobacterium tuberculosis
SUMu004]
gi|308372696|ref|ZP_07429553.2| conserved alanine rich membrane protein [Mycobacterium tuberculosis
SUMu005]
8 more sequence titles
Length=195
Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 191/191 (100%), Positives = 191/191 (100%), Gaps = 0/191 (0%)
Query 1 MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS 60
MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS
Sbjct 5 MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS 64
Query 61 TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS 120
TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS
Sbjct 65 TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS 124
Query 121 AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG 180
AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG
Sbjct 125 AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG 184
Query 181 LAGDVLQFGLV 191
LAGDVLQFGLV
Sbjct 185 LAGDVLQFGLV 195
>gi|15610793|ref|NP_218174.1| hypothetical protein Rv3657c [Mycobacterium tuberculosis H37Rv]
gi|31794827|ref|NP_857320.1| hypothetical protein Mb3681c [Mycobacterium bovis AF2122/97]
gi|121639570|ref|YP_979794.1| putative alanine rich membrane protein [Mycobacterium bovis BCG
str. Pasteur 1173P2]
26 more sequence titles
Length=191
Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 191/191 (100%), Positives = 191/191 (100%), Gaps = 0/191 (0%)
Query 1 MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS 60
MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS
Sbjct 1 MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS 60
Query 61 TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS 120
TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS
Sbjct 61 TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS 120
Query 121 AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG 180
AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG
Sbjct 121 AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG 180
Query 181 LAGDVLQFGLV 191
LAGDVLQFGLV
Sbjct 181 LAGDVLQFGLV 191
>gi|339296465|gb|AEJ48576.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
CCDC5079]
Length=200
Score = 350 bits (898), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 190/191 (99%), Positives = 190/191 (99%), Gaps = 0/191 (0%)
Query 1 MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS 60
MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS
Sbjct 10 MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS 69
Query 61 TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS 120
TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS
Sbjct 70 TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS 129
Query 121 AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG 180
AASGAALADGIVELAVQVRHDAAQAAAAAA RAGVLIAGPLGLCFLPAFLCVGIVPLVVG
Sbjct 130 AASGAALADGIVELAVQVRHDAAQAAAAAAARAGVLIAGPLGLCFLPAFLCVGIVPLVVG 189
Query 181 LAGDVLQFGLV 191
LAGDVLQFGLV
Sbjct 190 LAGDVLQFGLV 200
>gi|340628629|ref|YP_004747081.1| hypothetical protein MCAN_36771 [Mycobacterium canettii CIPT
140010059]
gi|340006819|emb|CCC46008.1| putative conserved alanine rich membrane protein [Mycobacterium
canettii CIPT 140010059]
Length=191
Score = 349 bits (896), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 190/191 (99%), Positives = 190/191 (99%), Gaps = 0/191 (0%)
Query 1 MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS 60
MALWLGAGPSVVRARAG PPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS
Sbjct 1 MALWLGAGPSVVRARAGMPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS 60
Query 61 TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS 120
TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS
Sbjct 61 TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS 120
Query 121 AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG 180
AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG
Sbjct 121 AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG 180
Query 181 LAGDVLQFGLV 191
LAGDVLQFGLV
Sbjct 181 LAGDVLQFGLV 191
>gi|307081837|ref|ZP_07491007.1| putative bacterial type II secretion system protein F domain
protein [Mycobacterium tuberculosis SUMu011]
gi|308360501|gb|EFP49352.1| putative bacterial type II secretion system protein F domain
protein [Mycobacterium tuberculosis SUMu011]
Length=171
Score = 314 bits (804), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 171/171 (100%), Positives = 171/171 (100%), Gaps = 0/171 (0%)
Query 21 RAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRR 80
RAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRR
Sbjct 1 RAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRR 60
Query 81 AADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRH 140
AADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRH
Sbjct 61 AADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRH 120
Query 141 DAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
DAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV
Sbjct 121 DAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 171
>gi|254366205|ref|ZP_04982249.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|134151717|gb|EBA43762.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
str. Haarlem]
Length=199
Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 171/188 (91%), Positives = 173/188 (93%), Gaps = 7/188 (3%)
Query 4 WLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAA 63
W G P G PRAHRP+QGLLLGRT+VADPLAVAASLDVLAVCLAAGMAVSTAA
Sbjct 19 WYGREP-------GSRPRAHRPYQGLLLGRTNVADPLAVAASLDVLAVCLAAGMAVSTAA 71
Query 64 AATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAAS 123
AATAAVAPPRLARVLRR ADLLAL ADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAAS
Sbjct 72 AATAAVAPPRLARVLRRTADLLALRADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAAS 131
Query 124 GAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAG 183
GAALAD IVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAG
Sbjct 132 GAALADRIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAG 191
Query 184 DVLQFGLV 191
DVLQFGLV
Sbjct 192 DVLQFGLV 199
>gi|289759811|ref|ZP_06519189.1| alanine rich membrane protein [Mycobacterium tuberculosis T85]
gi|289715375|gb|EFD79387.1| alanine rich membrane protein [Mycobacterium tuberculosis T85]
Length=144
Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/132 (100%), Positives = 132/132 (100%), Gaps = 0/132 (0%)
Query 60 STAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARR 119
STAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARR
Sbjct 13 STAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARR 72
Query 120 SAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVV 179
SAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVV
Sbjct 73 SAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVV 132
Query 180 GLAGDVLQFGLV 191
GLAGDVLQFGLV
Sbjct 133 GLAGDVLQFGLV 144
>gi|289747492|ref|ZP_06506870.1| alanine rich membrane protein [Mycobacterium tuberculosis 02_1987]
gi|289688020|gb|EFD55508.1| alanine rich membrane protein [Mycobacterium tuberculosis 02_1987]
Length=142
Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%)
Query 71 PPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADG 130
PPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADG
Sbjct 22 PPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADG 81
Query 131 IVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGL 190
IVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGL
Sbjct 82 IVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGL 141
Query 191 V 191
V
Sbjct 142 V 142
>gi|306801285|ref|ZP_07437953.1| hypothetical protein TMHG_02717 [Mycobacterium tuberculosis SUMu008]
gi|308351910|gb|EFP40761.1| hypothetical protein TMHG_02717 [Mycobacterium tuberculosis SUMu008]
Length=107
Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/107 (99%), Positives = 107/107 (100%), Gaps = 0/107 (0%)
Query 85 LALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQ 144
+ALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQ
Sbjct 1 MALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQ 60
Query 145 AAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
AAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV
Sbjct 61 AAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 107
>gi|333992579|ref|YP_004525193.1| hypothetical protein JDM601_3939 [Mycobacterium sp. JDM601]
gi|333488547|gb|AEF37939.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=189
Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 124/191 (65%), Positives = 141/191 (74%), Gaps = 4/191 (2%)
Query 1 MALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVS 60
+A+ + A PS VRARAG P RP Q + T D LA+AA L+V A+CL AGM VS
Sbjct 3 LAMAVLAAPSTVRARAGMP----RPQQPVRHRLTPGGDALALAAGLEVFALCLTAGMPVS 58
Query 61 TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRS 120
AAAATA APP+LA VLRR ADLLALGA+P +AWS PD G D T AVLRLARRS
Sbjct 59 GAAAATARYAPPQLAEVLRRGADLLALGAEPGVAWSASPDRSAGALDPSTTAVLRLARRS 118
Query 121 AASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVG 180
ASGAALA G+V LA Q R +AA A AAAERAGVLIAGPLGLCFLPAF+C+GIVP+V G
Sbjct 119 GASGAALATGLVALAAQCRAEAAHQATAAAERAGVLIAGPLGLCFLPAFVCLGIVPVVAG 178
Query 181 LAGDVLQFGLV 191
LAGDVL+ GL+
Sbjct 179 LAGDVLRSGLL 189
>gi|342862008|ref|ZP_08718652.1| type II secretion system protein F [Mycobacterium colombiense
CECT 3035]
gi|342130548|gb|EGT83857.1| type II secretion system protein F [Mycobacterium colombiense
CECT 3035]
Length=210
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 133/188 (71%), Positives = 149/188 (80%), Gaps = 3/188 (1%)
Query 4 WLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAA 63
W+G GPS+VR+RAG P R R +G R DPLAVA+ LDVLAVCL AGMAVSTAA
Sbjct 26 WVGPGPSLVRSRAGTPARGGRRPRGRAPSRG--TDPLAVASCLDVLAVCLGAGMAVSTAA 83
Query 64 AATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAAS 123
AA A APP+LARVLRRAADLLALGADP +AWS PP P D Q DA+LRLARRSA+S
Sbjct 84 AAAAPSAPPKLARVLRRAADLLALGADPAVAWSIPPG-PRQAADPQIDALLRLARRSASS 142
Query 124 GAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAG 183
GAALA + ELA + R+DAA AA AAAERAGVLIAGPLGLCFLPAF+C+GIVP+V GLAG
Sbjct 143 GAALAGAVGELAEESRNDAAHAATAAAERAGVLIAGPLGLCFLPAFVCLGIVPVVAGLAG 202
Query 184 DVLQFGLV 191
DVLQ GL+
Sbjct 203 DVLQSGLL 210
>gi|308232521|ref|ZP_07416349.2| hypothetical protein TMAG_00146 [Mycobacterium tuberculosis SUMu001]
gi|308213541|gb|EFO72940.1| hypothetical protein TMAG_00146 [Mycobacterium tuberculosis SUMu001]
Length=143
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%)
Query 6 GAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAA 65
GAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAA
Sbjct 41 GAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAA 100
Query 66 TAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDA 108
TAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDA
Sbjct 101 TAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDA 143
>gi|183985114|ref|YP_001853405.1| hypothetical protein MMAR_5145 [Mycobacterium marinum M]
gi|183178440|gb|ACC43550.1| conserved hypothetical alanine-rich membrane protein [Mycobacterium
marinum M]
Length=200
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/154 (72%), Positives = 125/154 (82%), Gaps = 0/154 (0%)
Query 38 DPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSR 97
DPLA A+ LDV AVCLA+GMAVS AAAATA APP LARVL RAA+LL LGADP++AWS
Sbjct 47 DPLAFASCLDVFAVCLASGMAVSAAAAATARSAPPGLARVLSRAAELLMLGADPSVAWSA 106
Query 98 PPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLI 157
PP+LP + D DA+LRLARRSA SGAAL+D + ELA Q RHDA AA AAAERAGVLI
Sbjct 107 PPELPLSSVDGHVDALLRLARRSACSGAALSDAVGELAAQSRHDATHAATAAAERAGVLI 166
Query 158 AGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
AGPLGLCFLPAF+C+GIVP++ GLA VL GL+
Sbjct 167 AGPLGLCFLPAFVCLGIVPVLAGLAAKVLDSGLL 200
>gi|118619398|ref|YP_907730.1| hypothetical protein MUL_4230 [Mycobacterium ulcerans Agy99]
gi|118571508|gb|ABL06259.1| conserved hypothetical alanine-rich membrane protein [Mycobacterium
ulcerans Agy99]
Length=200
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/154 (70%), Positives = 122/154 (80%), Gaps = 0/154 (0%)
Query 38 DPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSR 97
DPLA A+ LDV A LA+GMAV AAAATA APP LARVL RAA+LL LGADP++AWS
Sbjct 47 DPLAFASCLDVFATSLASGMAVPAAAAATARSAPPGLARVLSRAAELLMLGADPSVAWSA 106
Query 98 PPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLI 157
PP+LP + D DA+LRLARRSA SGAAL+D + ELA Q RHDA AA AAAERAGVLI
Sbjct 107 PPELPLSSVDGHVDALLRLARRSACSGAALSDAVGELAAQSRHDATHAATAAAERAGVLI 166
Query 158 AGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
AGPLGLCFLPAF+C+GIVP++ GLA VL GL+
Sbjct 167 AGPLGLCFLPAFVCLGIVPVLAGLAAKVLDSGLL 200
>gi|289755782|ref|ZP_06515160.1| hypothetical protein TBGG_02864 [Mycobacterium tuberculosis EAS054]
gi|289696369|gb|EFD63798.1| hypothetical protein TBGG_02864 [Mycobacterium tuberculosis EAS054]
Length=143
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 110/113 (98%), Positives = 110/113 (98%), Gaps = 0/113 (0%)
Query 79 RRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQV 138
RR A LLALGADPNIA SRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQV
Sbjct 31 RRLAGLLALGADPNIARSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQV 90
Query 139 RHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
RHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV
Sbjct 91 RHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 143
>gi|118471127|ref|YP_890387.1| type II secretion system protein F [Mycobacterium smegmatis str.
MC2 155]
gi|118172414|gb|ABK73310.1| bacterial type II secretion system protein F domain [Mycobacterium
smegmatis str. MC2 155]
Length=189
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/172 (64%), Positives = 125/172 (73%), Gaps = 11/172 (6%)
Query 20 PRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLR 79
PR R G TD DPLA A++ D+ A CL AGMAVSTAAAA A AP LA+ L
Sbjct 29 PRRERAASG-----TD--DPLAAASTFDLFAACLTAGMAVSTAAAAAAHTAPTPLAQALI 81
Query 80 RAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVR 139
RA+DLLALGADP AWS + T D +A+LR+ARRSAASG ALA G+ ELA Q R
Sbjct 82 RASDLLALGADPMTAWSSGVE----TQDKNVEALLRMARRSAASGTALAHGVSELAAQSR 137
Query 140 HDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
HD A AA AAAERAGVL+AGPLGLC+LPAF+C+GIVP+VVGLAGDVL GL+
Sbjct 138 HDVAAAADAAAERAGVLVAGPLGLCYLPAFVCLGIVPVVVGLAGDVLGAGLL 189
>gi|254552768|ref|ZP_05143215.1| hypothetical protein Mtube_20352 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=135
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/109 (91%), Positives = 100/109 (92%), Gaps = 0/109 (0%)
Query 6 GAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAA 65
GAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAA
Sbjct 15 GAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAA 74
Query 66 TAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVL 114
TAAVAPPRLARVLRRAADLLALGADPNIAWSRPPD + DAVL
Sbjct 75 TAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDCRRAPTMRRLDAVL 123
>gi|118463862|ref|YP_879791.1| type II secretion system protein F [Mycobacterium avium 104]
gi|118165149|gb|ABK66046.1| bacterial type II secretion system protein F domain [Mycobacterium
avium 104]
Length=195
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 132/190 (70%), Positives = 147/190 (78%), Gaps = 0/190 (0%)
Query 2 ALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVST 61
A+ +G GPS+ R RAG P RA P + GR DPLA+A+ LDVLAVCL AGMAVS
Sbjct 6 AVLMGPGPSLTRRRAGTPARAEGPRREPGPGRGRGPDPLAIASCLDVLAVCLGAGMAVSA 65
Query 62 AAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSA 121
AAAA AP +L RVLRRAADLLALGADP +AWS PPD P G D Q DA+LRLARRSA
Sbjct 66 AAAAAVPSAPAQLGRVLRRAADLLALGADPAVAWSMPPDPPGGPADPQIDALLRLARRSA 125
Query 122 ASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGL 181
ASGAALA G+ ELA Q R DAA AAAAAERAGVLIAGPLGLCFLPAF+C+GIVP+V GL
Sbjct 126 ASGAALAGGVAELADQSRSDAAHTAAAAAERAGVLIAGPLGLCFLPAFVCLGIVPVVAGL 185
Query 182 AGDVLQFGLV 191
AGDVL+ GL+
Sbjct 186 AGDVLRSGLL 195
>gi|41406516|ref|NP_959352.1| hypothetical protein MAP0418 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394865|gb|AAS02735.1| hypothetical protein MAP_0418 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=193
Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 132/190 (70%), Positives = 147/190 (78%), Gaps = 0/190 (0%)
Query 2 ALWLGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVST 61
A+ +G GPS+ R RAG P RA P + GR DPLA+A+ LDVLAVCL AGMAVS
Sbjct 4 AVLMGPGPSLTRRRAGTPARAGGPRREPGPGRGRGPDPLAIASCLDVLAVCLGAGMAVSA 63
Query 62 AAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSA 121
AAAA AP +L RVLRRAADLLALGADP +AWS PPD P G D Q DA+LRLARRSA
Sbjct 64 AAAAAVPSAPAQLGRVLRRAADLLALGADPAVAWSMPPDPPGGPADPQIDALLRLARRSA 123
Query 122 ASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGL 181
ASGAALA G+ ELA Q R DAA AAAAAERAGVLIAGPLGLCFLPAF+C+GIVP+V GL
Sbjct 124 ASGAALAGGVAELADQSRSDAAHTAAAAAERAGVLIAGPLGLCFLPAFVCLGIVPVVAGL 183
Query 182 AGDVLQFGLV 191
AGDVL+ GL+
Sbjct 184 AGDVLRSGLL 193
>gi|336460806|gb|EGO39691.1| Flp pilus assembly protein TadC [Mycobacterium avium subsp. paratuberculosis
S397]
Length=200
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 131/187 (71%), Positives = 145/187 (78%), Gaps = 0/187 (0%)
Query 5 LGAGPSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAA 64
+G GPS+ R RAG P RA P + GR DPLA+A+ LDVLAVCL AGMAVS AAA
Sbjct 14 MGPGPSLTRRRAGTPARAGGPRREPGPGRGRGPDPLAIASCLDVLAVCLGAGMAVSAAAA 73
Query 65 ATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASG 124
A AP +L RVLRRAADLLALGADP +AWS PPD P G D Q DA+LRLARRSAASG
Sbjct 74 AAVPSAPAQLGRVLRRAADLLALGADPAVAWSMPPDPPGGPADPQIDALLRLARRSAASG 133
Query 125 AALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGD 184
AALA G+ ELA Q R DAA AAAAAERAGVLIAGPLGLCFLPAF+C+GIVP+V GLAGD
Sbjct 134 AALAGGVAELADQSRSDAAHTAAAAAERAGVLIAGPLGLCFLPAFVCLGIVPVVAGLAGD 193
Query 185 VLQFGLV 191
VL+ GL+
Sbjct 194 VLRSGLL 200
>gi|120406353|ref|YP_956182.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1]
gi|119959171|gb|ABM16176.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1]
Length=191
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/154 (66%), Positives = 120/154 (78%), Gaps = 4/154 (2%)
Query 38 DPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSR 97
D LAVAASLDVLA CL +GM V++AAAA A AP LA +LRRAADL+ALGADPN AW+
Sbjct 42 DILAVAASLDVLAACLRSGMPVASAAAAVAESAPAGLAMLLRRAADLVALGADPNRAWAN 101
Query 98 PPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLI 157
P G D DA LR+ARRSA+SG ALA G+ +LAVQ+R +A AA+A AERA VL+
Sbjct 102 PD----GVADRYVDAFLRMARRSASSGTALAQGVEDLAVQLRGEAVDAASARAERASVLM 157
Query 158 AGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
A PLG+C+LPAFLCVGIVP+V GLAG+VLQ GL+
Sbjct 158 AAPLGVCYLPAFLCVGIVPVVAGLAGEVLQSGLL 191
>gi|306778011|ref|ZP_07416348.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
SUMu001]
gi|308213686|gb|EFO73085.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
SUMu001]
Length=78
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/78 (99%), Positives = 78/78 (100%), Gaps = 0/78 (0%)
Query 114 LRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVG 173
+RLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVG
Sbjct 1 MRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVG 60
Query 174 IVPLVVGLAGDVLQFGLV 191
IVPLVVGLAGDVLQFGLV
Sbjct 61 IVPLVVGLAGDVLQFGLV 78
>gi|325675225|ref|ZP_08154910.1| bacterial type II secretion system protein F domain protein [Rhodococcus
equi ATCC 33707]
gi|325553931|gb|EGD23608.1| bacterial type II secretion system protein F domain protein [Rhodococcus
equi ATCC 33707]
Length=198
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/154 (58%), Positives = 106/154 (69%), Gaps = 6/154 (3%)
Query 38 DPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSR 97
DPLAVA + D+LA CL AG+ V A AA AA AP L LRR AD LALGADP AW
Sbjct 51 DPLAVAGTFDLLAACLKAGLPVPDAVAAVAASAPDPLGESLRRTADRLALGADPATAWDV 110
Query 98 PPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLI 157
P T+A+ R+ARRSA SGAAL+ + +LA Q R +A A AA E+AGVLI
Sbjct 111 VASEP------ATEALARMARRSARSGAALSSAMADLATQQRTEAEDRAIAAVEKAGVLI 164
Query 158 AGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
GPLGLCFLPAF+C+GIVP+V+GLAG VL+ GL+
Sbjct 165 GGPLGLCFLPAFVCLGIVPVVIGLAGRVLEGGLL 198
>gi|312138012|ref|YP_004005348.1| type ii secretion system integral membrane subunit [Rhodococcus
equi 103S]
gi|311887351|emb|CBH46662.1| putative type II secretion system integral membrane subunit [Rhodococcus
equi 103S]
Length=199
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/154 (58%), Positives = 106/154 (69%), Gaps = 6/154 (3%)
Query 38 DPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSR 97
DPLAVA + D+LA CL AG+ V A AA AA AP L LRR AD LALGADP AW
Sbjct 52 DPLAVAGTFDLLAACLKAGLPVPDAVAAVAASAPDPLGESLRRTADRLALGADPATAWDV 111
Query 98 PPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLI 157
P T+A+ R+ARRSA SGAAL+ + +LA Q R +A A AA E+AGVLI
Sbjct 112 VASEP------ATEALARMARRSARSGAALSSAMADLATQQRTEAEDRAIAAVEKAGVLI 165
Query 158 AGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
GPLGLCFLPAF+C+GIVP+V+GLAG VL+ GL+
Sbjct 166 GGPLGLCFLPAFVCLGIVPVVIGLAGRVLEGGLL 199
>gi|315446283|ref|YP_004079162.1| Flp pilus assembly protein TadC [Mycobacterium sp. Spyr1]
gi|315264586|gb|ADU01328.1| Flp pilus assembly protein TadC [Mycobacterium sp. Spyr1]
Length=197
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/161 (64%), Positives = 121/161 (76%), Gaps = 10/161 (6%)
Query 38 DPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSR 97
D L VAASLD+LA CL +GMAVSTAA A AA APP +A +L RAADLLALGADP AW+
Sbjct 40 DALTVAASLDLLAACLTSGMAVSTAAGAVAASAPPAMAALLSRAADLLALGADPARAWAN 99
Query 98 P-------PDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAA 150
P P G H ++ LR+ARRSA+SG+ALA G+ ELAVQ+R DA AA A A
Sbjct 100 PDAGERNSTQNPVGGH---LESFLRMARRSASSGSALAHGVEELAVQLRADAVDAAGARA 156
Query 151 ERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
ERA VL+AGPLGLC+LPAFLC+GIVP+V GLAGDVLQ G++
Sbjct 157 ERAAVLMAGPLGLCYLPAFLCLGIVPVVAGLAGDVLQSGVL 197
>gi|226363662|ref|YP_002781444.1| hypothetical protein ROP_42520 [Rhodococcus opacus B4]
gi|226242151|dbj|BAH52499.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=194
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/160 (57%), Positives = 110/160 (69%), Gaps = 6/160 (3%)
Query 32 GRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADP 91
G T DPLA AA+ D+LA CL AG+ V+TAA A A AP L+ LRRAADLLALGAD
Sbjct 41 GPTRREDPLATAAAFDLLAACLRAGLPVATAAQAVARSAPAPLSESLRRAADLLALGADA 100
Query 92 NIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAE 151
AW D T+++ R+ARRSAASG++LA + ELA R A+A+AE
Sbjct 101 ATAWEA------AASDPATESLARMARRSAASGSSLAGSMTELAADARTQVEHLASASAE 154
Query 152 RAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
RAGVLI+GPLGLCFLPAF+C+GI+P+VVGLA VL GL+
Sbjct 155 RAGVLISGPLGLCFLPAFICLGIIPVVVGLASRVLDGGLL 194
>gi|145221978|ref|YP_001132656.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK]
gi|145214464|gb|ABP43868.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK]
Length=197
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/161 (64%), Positives = 121/161 (76%), Gaps = 10/161 (6%)
Query 38 DPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSR 97
D L VAASLD+LA CL +GMAVSTAA A AA APP +A +L RAADLLALGADP AW+
Sbjct 40 DALTVAASLDLLAACLTSGMAVSTAAGAVAASAPPAMAALLSRAADLLALGADPARAWAN 99
Query 98 P-------PDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAA 150
P P G H ++ LR+ARRSA+SG+ALA G+ ELAVQ+R DA AA A A
Sbjct 100 PDAGERNSTQNPVGGH---LESFLRMARRSASSGSALAHGVEELAVQLRVDAVDAAGARA 156
Query 151 ERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
ERA VL+AGPLGLC+LPAFLC+GIVP+V GLAGDVLQ G++
Sbjct 157 ERAAVLMAGPLGLCYLPAFLCLGIVPVVAGLAGDVLQSGVL 197
>gi|126437754|ref|YP_001073445.1| type II secretion system protein [Mycobacterium sp. JLS]
gi|126237554|gb|ABO00955.1| type II secretion system protein [Mycobacterium sp. JLS]
Length=192
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 101/155 (66%), Positives = 117/155 (76%), Gaps = 6/155 (3%)
Query 37 ADPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWS 96
ADPLA A++ DVL CL +GMAVS+AA+A AA AP LA +L RAAD+LALGAD AWS
Sbjct 42 ADPLAAASTFDVLTACLTSGMAVSSAASAAAASAPTGLAAILARAADMLALGADAATAWS 101
Query 97 RPPDLPPGT-HDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGV 155
PGT D A++RLARRSA SG ALA G+ +LA + R DAA AA A AERAGV
Sbjct 102 -----DPGTPLDDHARALMRLARRSAESGTALAQGVADLAAESRSDAADAARATAERAGV 156
Query 156 LIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGL 190
LIA PLG+C+LPAFLC+GIVP+VVGLAGDVLQ GL
Sbjct 157 LIAAPLGVCYLPAFLCLGIVPVVVGLAGDVLQSGL 191
>gi|306786565|ref|ZP_07424887.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
SUMu003]
gi|308328848|gb|EFP17699.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
SUMu003]
Length=74
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/74 (100%), Positives = 74/74 (100%), Gaps = 0/74 (0%)
Query 118 RRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPL 177
RRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPL
Sbjct 1 RRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPL 60
Query 178 VVGLAGDVLQFGLV 191
VVGLAGDVLQFGLV
Sbjct 61 VVGLAGDVLQFGLV 74
>gi|169627576|ref|YP_001701225.1| hypothetical protein MAB_0472 [Mycobacterium abscessus ATCC 19977]
gi|169239543|emb|CAM60571.1| Conserved hypothetical membrane protein [Mycobacterium abscessus]
Length=194
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/186 (54%), Positives = 120/186 (65%), Gaps = 10/186 (5%)
Query 9 PSVVRARAGRPPRAHRPHQGLLLGRTDVADPL-AVAASLDVLAVCLAAGMAVSTAAAATA 67
P +RARA P HR R D+ L +A SLD+ VCL +GM V+TAA A
Sbjct 16 PGALRARARMSP--HRLPASF--ERDDIEKGLLGMAFSLDMFGVCLRSGMPVATAALVVA 71
Query 68 AVAPPRLARVLRRAADLLALGADPNIAW--SRPPDLPPGTHDAQTDAVLRLARRSAASGA 125
A AP LAR+LRRA ++LALGA + AW + PD PG Q A+ RLARRSA SG
Sbjct 72 AAAPVELARILRRAGEMLALGAPASTAWMDAGSPD-DPGYE--QRQALTRLARRSADSGV 128
Query 126 ALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDV 185
+ADGI LAVQ R DA +A A AERAGVLI PLGLCFLP+F+C+GIVP+V+GLA DV
Sbjct 129 VMADGIASLAVQCRRDALDSAVATAERAGVLIGAPLGLCFLPSFICLGIVPVVMGLARDV 188
Query 186 LQFGLV 191
G++
Sbjct 189 FHSGVL 194
>gi|262200535|ref|YP_003271743.1| type II secretion system F domain-containing protein [Gordonia
bronchialis DSM 43247]
gi|262083882|gb|ACY19850.1| Type II secretion system F domain protein [Gordonia bronchialis
DSM 43247]
Length=202
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/180 (53%), Positives = 113/180 (63%), Gaps = 2/180 (1%)
Query 9 PSVVRARAGRPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAATAA 68
P + R PP A L R+D DP AVAA+ D+ AVCL AG+ V TAAA AA
Sbjct 20 PRWLLYRVVDPPPAPTREPRWLGVRSDSDDPFAVAAAFDLFAVCLRAGLPVGTAAATVAA 79
Query 69 VAPPRLARVLRRAADLLALGADPNIAWS--RPPDLPPGTHDAQTDAVLRLARRSAASGAA 126
AP LA L ADLL LGADP+ AWS D P DA+ +ARRSA +G++
Sbjct 80 SAPASLAGPLTEVADLLGLGADPDTAWSVLTASDTPVVGAQPHLDALASMARRSARAGSS 139
Query 127 LADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVL 186
LA G+ ELA + R A A AAAERAGV I+GPLGLCFLPAF+C+GIVP+V+GLA VL
Sbjct 140 LAAGLAELADETRRQAHDTATAAAERAGVAISGPLGLCFLPAFVCLGIVPVVIGLASTVL 199
>gi|111021318|ref|YP_704290.1| hypothetical protein RHA1_ro04342 [Rhodococcus jostii RHA1]
gi|110820848|gb|ABG96132.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=196
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/154 (58%), Positives = 109/154 (71%), Gaps = 6/154 (3%)
Query 38 DPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSR 97
DPLA+AA+ D+LA CL AG+ V+TAA A + AP L+ LRRAADLL+LGAD AW
Sbjct 49 DPLAIAATFDLLAACLRAGLPVATAAQAVSRTAPAPLSESLRRAADLLSLGADAATAWEA 108
Query 98 PPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLI 157
D T+++ R+ARRSAASG++LA + ELA R AAAAAERAGVLI
Sbjct 109 ------AASDPATESLARMARRSAASGSSLAGSMTELAADGRIQVEHLAAAAAERAGVLI 162
Query 158 AGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
+GPLGLCFLPAF+C+GI+P+VVGLA VL GL+
Sbjct 163 SGPLGLCFLPAFICLGIIPVVVGLASRVLDGGLL 196
>gi|296141574|ref|YP_003648817.1| type II secretion system F domain-containing protein [Tsukamurella
paurometabola DSM 20162]
gi|296029708|gb|ADG80478.1| Type II secretion system F domain protein [Tsukamurella paurometabola
DSM 20162]
Length=197
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/154 (55%), Positives = 106/154 (69%), Gaps = 6/154 (3%)
Query 38 DPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSR 97
DP AA+ D+ AVCL AGM + AA A A+ A P LA VL RAA++LALG+DP+ AW
Sbjct 50 DPFEGAAAYDLFAVCLRAGMPTADAARAVASTAAPALAAVLGRAAEMLALGSDPDTAWRT 109
Query 98 PPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLI 157
D DAQ A+ R+ RRSA +G++ A G+ +LA R A A AA ERAGV++
Sbjct 110 ESD------DAQVIALTRMLRRSARAGSSPAVGLADLARTERAQAEDRAVAAGERAGVMV 163
Query 158 AGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
AGPLGLCFLPAF+C+GIVP+V+GLAG VL GL+
Sbjct 164 AGPLGLCFLPAFVCLGIVPVVMGLAGTVLGEGLL 197
>gi|108801766|ref|YP_641963.1| type II secretion system protein [Mycobacterium sp. MCS]
gi|119870917|ref|YP_940869.1| type II secretion system protein [Mycobacterium sp. KMS]
gi|108772185|gb|ABG10907.1| type II secretion system protein [Mycobacterium sp. MCS]
gi|119697006|gb|ABL94079.1| type II secretion system protein [Mycobacterium sp. KMS]
Length=192
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 103/155 (67%), Positives = 119/155 (77%), Gaps = 6/155 (3%)
Query 37 ADPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWS 96
ADPLA A++ DVLA CL +GMAVS+AA+A AA APP LA +L RAAD+LALGAD AWS
Sbjct 42 ADPLAAASTFDVLAACLTSGMAVSSAASAAAASAPPGLAAILARAADMLALGADAATAWS 101
Query 97 RPPDLPPGT-HDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGV 155
PGT D A++RLARRSA SG ALA G+ +LA + R DAA AA A AERAGV
Sbjct 102 -----DPGTPLDDHARALMRLARRSAESGTALAQGVADLAAESRSDAADAARATAERAGV 156
Query 156 LIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGL 190
LIA PLG+C+LPAFLC+GIVP+VVGLAGDVLQ GL
Sbjct 157 LIAAPLGVCYLPAFLCLGIVPVVVGLAGDVLQSGL 191
>gi|343926486|ref|ZP_08765991.1| hypothetical protein GOALK_060_01500 [Gordonia alkanivorans NBRC
16433]
gi|343763724|dbj|GAA12917.1| hypothetical protein GOALK_060_01500 [Gordonia alkanivorans NBRC
16433]
Length=204
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/152 (58%), Positives = 104/152 (69%), Gaps = 3/152 (1%)
Query 38 DPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWS- 96
DP AVA++ D+ AVCL AG+ V AAA A APP LAR L R ADLL LGADP+ AW+
Sbjct 50 DPFAVASAFDLFAVCLRAGLPVGVAAAVVAGRAPPSLARPLARVADLLQLGADPDTAWAA 109
Query 97 --RPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAG 154
+ D +A+ LARRSA +G++LA G+ ELA VR A A AAAERAG
Sbjct 110 LLEDSSEAKRSADDHLEALAALARRSARAGSSLAGGLAELADDVRRRAHDDALAAAERAG 169
Query 155 VLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVL 186
V I+GPLGLCFLPAF+C+GIVP+VVGLA VL
Sbjct 170 VAISGPLGLCFLPAFICLGIVPVVVGLASTVL 201
>gi|229494799|ref|ZP_04388555.1| bacterial type II secretion system protein F domain protein [Rhodococcus
erythropolis SK121]
gi|229318295|gb|EEN84160.1| bacterial type II secretion system protein F domain protein [Rhodococcus
erythropolis SK121]
Length=189
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/157 (60%), Positives = 112/157 (72%), Gaps = 6/157 (3%)
Query 35 DVADPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIA 94
D DPLAVAASLD+L CL AG+ VS A A A+ AP +A LRR ADLLALGADP+ A
Sbjct 39 DKPDPLAVAASLDLLGACLRAGLPVSAAITAMASTAPKPMADSLRRVADLLALGADPDAA 98
Query 95 WSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAG 154
WS D T+A+ R+ARRSA SG++L+ + ELA + R DA AAAAAERAG
Sbjct 99 WSE------AALDPDTEALARMARRSARSGSSLSSSMAELAERSRGDAEDLAAAAAERAG 152
Query 155 VLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
VLI+GPLGLCFLPAF+ +GIVP+V+GLA VL GL+
Sbjct 153 VLISGPLGLCFLPAFIALGIVPVVIGLATTVLGNGLL 189
>gi|326383472|ref|ZP_08205159.1| Type II secretion system F domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326197878|gb|EGD55065.1| Type II secretion system F domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
Length=188
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/150 (54%), Positives = 98/150 (66%), Gaps = 7/150 (4%)
Query 38 DPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSR 97
DP VAA D LAVCL AG+ ++TAAA A APP L RAADLLALGADP+ AW+
Sbjct 42 DPFDVAAGYDTLAVCLRAGLPLATAAAVAAETAPPELRSSFTRAADLLALGADPDQAWA- 100
Query 98 PPDLPPGTHDAQTDAVLR-LARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVL 156
P D+ A L L R++ +G+ALAD + A R A A+ AAERAGV
Sbjct 101 -----PVDADSVDFAELAALISRASRAGSALADSVGGFADATRRRAENASLEAAERAGVK 155
Query 157 IAGPLGLCFLPAFLCVGIVPLVVGLAGDVL 186
I+GPLGLCFLPAF+C+GIVP+V+GLA +L
Sbjct 156 ISGPLGLCFLPAFVCLGIVPVVIGLASSLL 185
>gi|226303995|ref|YP_002763953.1| hypothetical protein RER_05060 [Rhodococcus erythropolis PR4]
gi|226183110|dbj|BAH31214.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=194
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/157 (58%), Positives = 110/157 (71%), Gaps = 6/157 (3%)
Query 35 DVADPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIA 94
D DPLAVAASLD+L CL AG+ VS A A A+ AP +A L R ADLL LGADP+ A
Sbjct 44 DKPDPLAVAASLDLLGACLRAGLPVSAAITAMASTAPKPMADTLSRVADLLTLGADPDAA 103
Query 95 WSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAG 154
WS D T+A+ R+ARRSA SG++L+ + ELA + R DA AAAAAERAG
Sbjct 104 WSE------AALDPDTEALARMARRSARSGSSLSSSMAELAERSRGDAEDLAAAAAERAG 157
Query 155 VLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
VLI+GPLGLCFLPAF+ +GIVP+V+GLA VL GL+
Sbjct 158 VLISGPLGLCFLPAFIALGIVPVVIGLATTVLGNGLL 194
>gi|333917959|ref|YP_004491540.1| Type II secretion system F domain-containing protein [Amycolicicoccus
subflavus DQS3-9A1]
gi|333480180|gb|AEF38740.1| Type II secretion system F domain protein [Amycolicicoccus subflavus
DQS3-9A1]
Length=205
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/136 (46%), Positives = 88/136 (65%), Gaps = 6/136 (4%)
Query 52 CLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTD 111
CL AG++ + AA A A ++A R ++LL+LG D AW+ P +TD
Sbjct 72 CLRAGLSPAGAAGAVATTQQGQVAAFFGRISNLLSLGVDEETAWTSAEGNP------ETD 125
Query 112 AVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLC 171
A +R A+RSA +G LA+ + ELA ++R +A +A A+RAGVLIAGPLGLCFLP+F+C
Sbjct 126 AFIRAAQRSARAGTPLAEAVSELAAELRQNAKDKSAEKAQRAGVLIAGPLGLCFLPSFMC 185
Query 172 VGIVPLVVGLAGDVLQ 187
+GI P+V+GLA + Q
Sbjct 186 LGIAPVVLGLAYQLAQ 201
>gi|254773480|ref|ZP_05214996.1| type II secretion system protein F [Mycobacterium avium subsp.
avium ATCC 25291]
Length=119
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 92/119 (78%), Positives = 101/119 (85%), Gaps = 0/119 (0%)
Query 73 RLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIV 132
+L RVLRRAADLLALGADP +AWS PPD P G D Q DA+LRLARRSAASGAALA G+
Sbjct 1 QLGRVLRRAADLLALGADPAVAWSMPPDPPGGPADPQIDALLRLARRSAASGAALAGGVA 60
Query 133 ELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFGLV 191
ELA Q R DAA AAAAAERAGVLIAGPLGLCFLPAF+C+GIVP+V GLAGDVL+ GL+
Sbjct 61 ELADQSRSDAAHTAAAAAERAGVLIAGPLGLCFLPAFVCLGIVPVVAGLAGDVLRSGLL 119
>gi|317508888|ref|ZP_07966527.1| alanine rich membrane protein [Segniliparus rugosus ATCC BAA-974]
gi|316252849|gb|EFV12280.1| alanine rich membrane protein [Segniliparus rugosus ATCC BAA-974]
Length=97
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/103 (54%), Positives = 71/103 (69%), Gaps = 6/103 (5%)
Query 87 LGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAA 146
+GA+P AW+ +LP T A+ R+A+RSA SG ALADG+VELA R +A A
Sbjct 1 MGAEPQTAWAEAEELP------ATAALARMAKRSARSGTALADGLVELATTERAEALDRA 54
Query 147 AAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQFG 189
A A RAGVL+AGPLGLCFLPAFLC+G++P+++GL V G
Sbjct 55 TAGAGRAGVLLAGPLGLCFLPAFLCLGVIPVIIGLGSGVFGDG 97
>gi|256374433|ref|YP_003098093.1| type II secretion system protein [Actinosynnema mirum DSM 43827]
gi|255918736|gb|ACU34247.1| type II secretion system protein [Actinosynnema mirum DSM 43827]
Length=185
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/145 (48%), Positives = 91/145 (63%), Gaps = 6/145 (4%)
Query 38 DPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSR 97
DPLA+A + D+ A L +G+ V +A A PP A L + DLLALGADP AW
Sbjct 42 DPLALAETWDLFAAALRSGLPVPSALHAVLPGTPPGPAERLGQVRDLLALGADPATAWD- 100
Query 98 PPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLI 157
P T + R ARR+A SGAALAD + +LA ++R AA A + A+RA VL+
Sbjct 101 -----PALDHPATAPLARSARRTARSGAALADQVADLAARLRASAADDAESRAQRAAVLV 155
Query 158 AGPLGLCFLPAFLCVGIVPLVVGLA 182
AGPL LCFLPAFLC+G+ P+++G+A
Sbjct 156 AGPLSLCFLPAFLCLGVAPVLIGIA 180
>gi|296118089|ref|ZP_06836671.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
gi|295968975|gb|EFG82218.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
Length=208
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/177 (37%), Positives = 94/177 (54%), Gaps = 11/177 (6%)
Query 15 RAGRPPRAHRPH-----QGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAATAAV 69
RAG A P + LL ++ DPL +A +++ C+ AG+++ A +A + V
Sbjct 38 RAGPEETAENPSAVFSVKKLLPKQSVSVDPLVIAGDIELFVACVRAGLSIQQATSAVSVV 97
Query 70 APPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALAD 129
A ++ LLALG +P AW +P G + + RL S SGAA+A
Sbjct 98 AEEPTVTYWKQVNSLLALGVEPERAWVHMQPVP-GLQE-----LARLVMMSEHSGAAIAS 151
Query 130 GIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVL 186
G L +R DA +A A AERAGV I+ PL LCFLPAF+ +G+VP+V+ L +L
Sbjct 152 GCQRLVDTLRADATSSAIAKAERAGVFISLPLALCFLPAFIILGLVPVVISLGAQLL 208
>gi|302530824|ref|ZP_07283166.1| predicted protein [Streptomyces sp. AA4]
gi|302439719|gb|EFL11535.1| predicted protein [Streptomyces sp. AA4]
Length=231
Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/151 (48%), Positives = 92/151 (61%), Gaps = 6/151 (3%)
Query 35 DVADPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIA 94
DV++ L A++LD+LA CL AGM V TA AA A APP L A+LLALG+D A
Sbjct 83 DVSERLRSASTLDLLAACLRAGMPVPTALAAVAPGAPPDTENALHATANLLALGSDAAPA 142
Query 95 WSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAG 154
W+ P PG + A R+A SGAALA +LA +VR A AERAG
Sbjct 143 WA-PLRARPGFAELAVAAT-----RTARSGAALASTADDLARRVRDGLGVEAEERAERAG 196
Query 155 VLIAGPLGLCFLPAFLCVGIVPLVVGLAGDV 185
V +A P+GLCFLPAF +G++P+V+GLAG +
Sbjct 197 VALAMPVGLCFLPAFFALGVLPVVLGLAGRI 227
>gi|257057540|ref|YP_003135372.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM
43017]
gi|256587412|gb|ACU98545.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM
43017]
Length=212
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/136 (48%), Positives = 84/136 (62%), Gaps = 6/136 (4%)
Query 47 DVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTH 106
D+L CL AG+ V TA + A VA +A VLR + LALGA AW + P
Sbjct 76 DLLGACLIAGLPVPTAVSTVADVATGPVAEVLRSTGNALALGASAESAWQHARNHP---- 131
Query 107 DAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFL 166
T + R A R+A+SG+ALA LA ++R+ A A A+RA VL+AGPLGLCFL
Sbjct 132 --DTAELARAACRTASSGSALAAQAFALAERIRNAATDRVEARAQRASVLVAGPLGLCFL 189
Query 167 PAFLCVGIVPLVVGLA 182
PAFLC+G++P+V+GLA
Sbjct 190 PAFLCLGVIPVVLGLA 205
>gi|227832053|ref|YP_002833760.1| hypothetical protein cauri_0223 [Corynebacterium aurimucosum
ATCC 700975]
gi|262184093|ref|ZP_06043514.1| hypothetical protein CaurA7_08886 [Corynebacterium aurimucosum
ATCC 700975]
gi|227453069|gb|ACP31822.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
Length=185
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/179 (37%), Positives = 93/179 (52%), Gaps = 16/179 (8%)
Query 9 PSVVRARAG-RPPRAHRPHQGLLLGRTDVADPLAVAASLDVLAVCLAAGMAVSTAAAATA 67
PS A++G R PR P G PL A+ L++ A CL AG++ +A A A
Sbjct 22 PSGRIAQSGSRTPRPKTPRDG----PAAEYGPLDAASDLELFAACLEAGLSTRSAVLAVA 77
Query 68 AVAPPRLARVLRRAADLLALGADPNIAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAAL 127
+P AA L+ +G N AWS P + ++RL + S SGAA+
Sbjct 78 EASPQ-----WSEAAALIGVGVPMNTAWSALASQP------HLEELVRLTQLSGESGAAM 126
Query 128 ADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVL 186
A G L Q+R +A+ A A AERAGV IA PL +CFLPAFL +G++P+++ L +
Sbjct 127 ATGCHRLVAQLRAEASAQATARAERAGVFIAAPLAVCFLPAFLVLGLIPVLISLGQQLF 185
>gi|345000557|ref|YP_004803411.1| Type II secretion system F domain-containing protein [Streptomyces
sp. SirexAA-E]
gi|344316183|gb|AEN10871.1| Type II secretion system F domain protein [Streptomyces sp. SirexAA-E]
Length=272
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/153 (44%), Positives = 92/153 (61%), Gaps = 12/153 (7%)
Query 40 LAVAASL----DVLAVCLAAGMAVSTAAAATA-AVAPPRLARVLRRAADLLALGADPNIA 94
LAV A L D+LA CL+AG AA A ++ P R++R AA++ LG +P+ A
Sbjct 125 LAVTAQLPLVADLLAACLSAGAGPRDAAEAVGESLGGPVGDRLVRTAAEI-RLGGEPSEA 183
Query 95 WSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAG 154
W R ++P A R R+ A+GA AD + +A ++R + A AA A A+RAG
Sbjct 184 WGRFGEIPGAARLA------RCLERAGATGAPAADPVSRVADEMRAERASAAVARAQRAG 237
Query 155 VLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQ 187
VLI P+GLCFLPAFL VG+ P+V+GLA +LQ
Sbjct 238 VLITAPVGLCFLPAFLAVGVAPVVIGLATGLLQ 270
>gi|296394989|ref|YP_003659873.1| type II secretion system F domain-containing protein [Segniliparus
rotundus DSM 44985]
gi|296182136|gb|ADG99042.1| Type II secretion system F domain protein [Segniliparus rotundus
DSM 44985]
Length=192
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/155 (51%), Positives = 96/155 (62%), Gaps = 6/155 (3%)
Query 33 RTDVADPLAVAASLDVLAVCLAAGMAVSTAAAATAAVAPPRLARVLRRAADLLALGADPN 92
RT D L +AAS D+LAV L AG+ S A A A AP LA L +AA LLALGA P
Sbjct 41 RTARLDQLGLAASYDLLAVSLRAGLPTSVAMRAVAQSAPEPLAGALAKAASLLALGAGPR 100
Query 93 IAWSRPPDLPPGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAER 152
AW L T + R+A RSA SG ALA+G+ ELA R +A AAA A R
Sbjct 101 TAWEEAAAL------EVTAPLARMAIRSARSGTALAEGLGELASGARAEALDQAAAEASR 154
Query 153 AGVLIAGPLGLCFLPAFLCVGIVPLVVGLAGDVLQ 187
A VL+AGPLGLCFLPAF C+G++P++VGL V++
Sbjct 155 AAVLLAGPLGLCFLPAFFCLGVMPVIVGLGSGVMR 189
Lambda K H
0.323 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 189364005308
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40